Multiple sequence alignment - TraesCS2A01G588000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G588000 chr2A 100.000 6690 0 0 1 6690 777515897 777522586 0.000000e+00 12355.0
1 TraesCS2A01G588000 chr2A 88.379 327 29 4 1867 2192 777517596 777517914 1.050000e-102 385.0
2 TraesCS2A01G588000 chr2A 88.379 327 29 4 1700 2018 777517763 777518088 1.050000e-102 385.0
3 TraesCS2A01G588000 chr2D 90.805 4448 241 78 1917 6269 635230723 635226349 0.000000e+00 5794.0
4 TraesCS2A01G588000 chr2D 90.528 1478 97 19 561 2018 635231902 635230448 0.000000e+00 1914.0
5 TraesCS2A01G588000 chr2D 88.095 546 50 8 2 541 635232422 635231886 9.460000e-178 634.0
6 TraesCS2A01G588000 chr2B 94.080 2669 124 11 1917 4560 779343319 779340660 0.000000e+00 4023.0
7 TraesCS2A01G588000 chr2B 89.352 2038 140 36 31 2018 779345041 779343031 0.000000e+00 2490.0
8 TraesCS2A01G588000 chr2B 80.481 1414 170 57 5307 6632 779339874 779338479 0.000000e+00 985.0
9 TraesCS2A01G588000 chr2B 90.075 665 42 7 4582 5241 779340565 779339920 0.000000e+00 841.0
10 TraesCS2A01G588000 chr2B 87.379 103 12 1 2091 2192 779343319 779343217 4.240000e-22 117.0
11 TraesCS2A01G588000 chr2B 92.727 55 3 1 6148 6202 779338265 779338212 2.000000e-10 78.7
12 TraesCS2A01G588000 chr2B 97.222 36 1 0 6475 6510 26145875 26145840 2.010000e-05 62.1
13 TraesCS2A01G588000 chr2B 100.000 33 0 0 6475 6507 184675721 184675753 2.010000e-05 62.1
14 TraesCS2A01G588000 chr3D 82.018 228 36 5 1315 1541 9100644 9100867 8.860000e-44 189.0
15 TraesCS2A01G588000 chr7B 100.000 33 0 0 6475 6507 42787338 42787370 2.010000e-05 62.1
16 TraesCS2A01G588000 chr7B 97.222 36 1 0 6475 6510 747439990 747439955 2.010000e-05 62.1
17 TraesCS2A01G588000 chr6B 100.000 33 0 0 6475 6507 679379106 679379138 2.010000e-05 62.1
18 TraesCS2A01G588000 chr3B 97.222 36 1 0 6475 6510 467059036 467059001 2.010000e-05 62.1
19 TraesCS2A01G588000 chr7D 96.970 33 1 0 6475 6507 7305695 7305727 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G588000 chr2A 777515897 777522586 6689 False 12355.000000 12355 100.000000 1 6690 1 chr2A.!!$F1 6689
1 TraesCS2A01G588000 chr2D 635226349 635232422 6073 True 2780.666667 5794 89.809333 2 6269 3 chr2D.!!$R1 6267
2 TraesCS2A01G588000 chr2B 779338212 779345041 6829 True 1422.450000 4023 89.015667 31 6632 6 chr2B.!!$R2 6601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 252 0.035176 CCGGGTTCGTTTCCCAACTA 59.965 55.000 0.00 0.0 44.81 2.24 F
761 774 0.796312 TCCGACGAATTTTCAGCTGC 59.204 50.000 9.47 0.0 0.00 5.25 F
2375 2439 0.179097 GGCCAGCGAAAGACTAGGAG 60.179 60.000 0.00 0.0 0.00 3.69 F
2574 2638 0.839946 AGTTCAAGTGGCTCTGGTGT 59.160 50.000 0.00 0.0 0.00 4.16 F
2662 2726 1.153667 GAGAGCTGAGGAGTTGGCG 60.154 63.158 0.00 0.0 0.00 5.69 F
4455 4532 0.400213 TCGGAATGCTGGAAACCACT 59.600 50.000 0.00 0.0 0.00 4.00 F
4757 4916 0.169009 GAAAATCTGCACTGCCCGAC 59.831 55.000 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1526 1563 0.044855 AGCAGTCCCTTACCTCCCAT 59.955 55.000 0.00 0.0 0.00 4.00 R
2527 2591 0.105760 TTCCACCAGGCACCAAATGT 60.106 50.000 0.00 0.0 33.74 2.71 R
4193 4262 0.394352 CAACAGTGGCCATACTCCCC 60.394 60.000 9.72 0.0 0.00 4.81 R
4437 4514 1.247567 AAGTGGTTTCCAGCATTCCG 58.752 50.000 0.00 0.0 32.34 4.30 R
4529 4606 1.300620 CGGACACGGCAGTCAAAGA 60.301 57.895 8.99 0.0 40.29 2.52 R
5420 5629 0.035458 AAGGACACACTGCCAGTAGC 59.965 55.000 0.00 0.0 44.14 3.58 R
5714 5923 0.106167 TCCCTGCTGTAGGTAGCGAT 60.106 55.000 10.99 0.0 46.61 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 80 9.585099 TTATTTGCTCCAAATGTAATGTTGATC 57.415 29.630 12.14 0.00 42.91 2.92
95 102 3.920412 TCGCGATGATAGGATCAAAATCG 59.080 43.478 3.71 3.36 43.50 3.34
120 127 3.969287 ACTCAAGAGCTGCATCACTTA 57.031 42.857 1.02 0.00 0.00 2.24
125 132 5.494724 TCAAGAGCTGCATCACTTATTTCT 58.505 37.500 1.02 0.00 0.00 2.52
177 185 0.472471 ACATCGTGGTGTGGAAACCT 59.528 50.000 0.00 0.00 41.16 3.50
216 224 1.000506 GACGACACCCATGCCGTATAT 59.999 52.381 0.00 0.00 35.22 0.86
222 230 3.210227 CACCCATGCCGTATATCACAAA 58.790 45.455 0.00 0.00 0.00 2.83
244 252 0.035176 CCGGGTTCGTTTCCCAACTA 59.965 55.000 0.00 0.00 44.81 2.24
252 261 4.635833 TCGTTTCCCAACTACCAAAAAC 57.364 40.909 0.00 0.00 0.00 2.43
273 283 6.743575 AACACTATGAATCTTTACACTGCC 57.256 37.500 0.00 0.00 0.00 4.85
292 302 2.356135 CCCCAACAGTCCTACAATTCG 58.644 52.381 0.00 0.00 0.00 3.34
337 347 3.248363 CACTTCGTTTGCAGAACATCTCA 59.752 43.478 10.82 0.00 0.00 3.27
475 485 7.548075 GCCAAGTAAAACTGTAGAGCTACAATA 59.452 37.037 11.14 1.46 44.47 1.90
478 488 9.517609 AAGTAAAACTGTAGAGCTACAATATCG 57.482 33.333 11.14 2.84 44.47 2.92
535 545 8.715088 CGCTGTGTAGTATGTAGTATGTATGTA 58.285 37.037 0.00 0.00 0.00 2.29
549 559 7.763356 AGTATGTATGTATCCAGATTCGTAGC 58.237 38.462 0.00 0.00 0.00 3.58
550 560 5.386958 TGTATGTATCCAGATTCGTAGCC 57.613 43.478 0.00 0.00 0.00 3.93
556 566 1.822990 TCCAGATTCGTAGCCGTTTCT 59.177 47.619 0.00 0.00 35.01 2.52
571 581 4.495844 GCCGTTTCTCTGTGTATAATTGGC 60.496 45.833 0.00 0.00 0.00 4.52
575 586 5.387113 TTCTCTGTGTATAATTGGCCCAT 57.613 39.130 0.00 0.00 0.00 4.00
576 587 4.973168 TCTCTGTGTATAATTGGCCCATC 58.027 43.478 0.00 0.00 0.00 3.51
594 605 1.829096 CGCATGCATCCATTCCCCA 60.829 57.895 19.57 0.00 0.00 4.96
601 612 1.966295 GCATCCATTCCCCACCATTGT 60.966 52.381 0.00 0.00 0.00 2.71
608 619 5.103301 TCCATTCCCCACCATTGTTGTATAT 60.103 40.000 0.00 0.00 0.00 0.86
612 623 4.418526 TCCCCACCATTGTTGTATATCCAT 59.581 41.667 0.00 0.00 0.00 3.41
652 665 7.506114 ACACAGTGTAGGTTATTTCTCTGAAA 58.494 34.615 3.69 0.00 0.00 2.69
761 774 0.796312 TCCGACGAATTTTCAGCTGC 59.204 50.000 9.47 0.00 0.00 5.25
817 832 9.490379 ACTCTGTTTCTACTGTATTCGAATTTT 57.510 29.630 17.19 0.00 0.00 1.82
859 888 1.068741 ACGATGGGAGAAGGCGTATTC 59.931 52.381 0.00 0.00 32.94 1.75
880 910 1.471684 CTCGTGTACGTTAAGCCCTCT 59.528 52.381 0.00 0.00 40.80 3.69
890 920 2.082140 TAAGCCCTCTATGAAGCGGA 57.918 50.000 0.00 0.00 28.03 5.54
980 1011 2.835895 GGAGACCTCCCGCTCTCC 60.836 72.222 4.72 2.01 44.59 3.71
981 1012 2.835895 GAGACCTCCCGCTCTCCC 60.836 72.222 0.00 0.00 0.00 4.30
1100 1134 3.257561 CCTCTCGCGCATTCCACG 61.258 66.667 8.75 0.00 0.00 4.94
1147 1184 2.202756 CCTCGCGAACCCTAGCAC 60.203 66.667 11.33 0.00 0.00 4.40
1455 1492 2.959372 CGGGAGATATGCGGCGTA 59.041 61.111 9.37 3.65 0.00 4.42
1503 1540 2.135933 GTGTTCGACCAAGTGAAGAGG 58.864 52.381 0.00 0.00 0.00 3.69
1524 1561 4.166888 GCCGAGGAGATGCCAGCA 62.167 66.667 0.00 0.00 40.02 4.41
1526 1563 2.429767 CCGAGGAGATGCCAGCAGA 61.430 63.158 0.00 0.00 40.02 4.26
1527 1564 1.747145 CGAGGAGATGCCAGCAGAT 59.253 57.895 0.00 0.00 40.02 2.90
1528 1565 0.600518 CGAGGAGATGCCAGCAGATG 60.601 60.000 0.00 0.00 40.02 2.90
1544 1581 0.470341 GATGGGAGGTAAGGGACTGC 59.530 60.000 0.00 0.00 40.86 4.40
1553 1590 2.351455 GTAAGGGACTGCTTCAGCTTC 58.649 52.381 0.00 0.00 40.86 3.86
1555 1592 0.990374 AGGGACTGCTTCAGCTTCAT 59.010 50.000 0.00 0.00 42.66 2.57
1561 1598 2.295349 ACTGCTTCAGCTTCATTGTTGG 59.705 45.455 0.00 0.00 42.66 3.77
1562 1599 1.000060 TGCTTCAGCTTCATTGTTGGC 60.000 47.619 0.00 0.00 42.66 4.52
1566 1603 0.245539 CAGCTTCATTGTTGGCTGGG 59.754 55.000 15.11 0.00 45.59 4.45
1588 1625 5.763204 GGGAATGGAATCGAGCTAAAATGTA 59.237 40.000 0.00 0.00 0.00 2.29
1589 1626 6.073003 GGGAATGGAATCGAGCTAAAATGTAG 60.073 42.308 0.00 0.00 0.00 2.74
1590 1627 5.931441 ATGGAATCGAGCTAAAATGTAGC 57.069 39.130 0.00 0.00 40.67 3.58
1636 1676 7.105588 ACATTTTCTTTGCATAAAATCTCCCC 58.894 34.615 10.36 0.00 34.01 4.81
1663 1703 5.139727 TCCATTTCATCAGACACAAAACCT 58.860 37.500 0.00 0.00 0.00 3.50
1669 1709 5.441500 TCATCAGACACAAAACCTACCAAA 58.558 37.500 0.00 0.00 0.00 3.28
1670 1710 5.888724 TCATCAGACACAAAACCTACCAAAA 59.111 36.000 0.00 0.00 0.00 2.44
1672 1712 5.010933 TCAGACACAAAACCTACCAAAACA 58.989 37.500 0.00 0.00 0.00 2.83
1726 1773 6.629128 ACACTGAAACACAACATTGATGAAA 58.371 32.000 0.43 0.00 0.00 2.69
1727 1774 7.267128 ACACTGAAACACAACATTGATGAAAT 58.733 30.769 0.43 0.00 0.00 2.17
1755 1802 4.038042 TCGAATCAGTGTAGCTCATAAGGG 59.962 45.833 0.00 0.00 0.00 3.95
1903 1950 6.088483 CACAACATTGTTGAATTCGAATCAGG 59.912 38.462 30.84 4.67 39.91 3.86
1944 2003 4.261736 CACAAGGTTTGTTTGTGCAATG 57.738 40.909 5.32 0.00 45.97 2.82
1945 2004 3.931468 CACAAGGTTTGTTTGTGCAATGA 59.069 39.130 5.32 0.00 45.97 2.57
1975 2034 6.486320 CACTTTGGGGCTAAAATTTTGAATGT 59.514 34.615 13.76 3.18 0.00 2.71
1983 2042 6.398095 GCTAAAATTTTGAATGTAGTGCCCT 58.602 36.000 13.76 0.00 0.00 5.19
1984 2043 6.311200 GCTAAAATTTTGAATGTAGTGCCCTG 59.689 38.462 13.76 0.00 0.00 4.45
1985 2044 5.806654 AAATTTTGAATGTAGTGCCCTGT 57.193 34.783 0.00 0.00 0.00 4.00
1986 2045 5.806654 AATTTTGAATGTAGTGCCCTGTT 57.193 34.783 0.00 0.00 0.00 3.16
1987 2046 5.806654 ATTTTGAATGTAGTGCCCTGTTT 57.193 34.783 0.00 0.00 0.00 2.83
1988 2047 4.582701 TTTGAATGTAGTGCCCTGTTTG 57.417 40.909 0.00 0.00 0.00 2.93
1989 2048 2.513753 TGAATGTAGTGCCCTGTTTGG 58.486 47.619 0.00 0.00 0.00 3.28
1990 2049 2.107378 TGAATGTAGTGCCCTGTTTGGA 59.893 45.455 0.00 0.00 38.35 3.53
1991 2050 2.200373 ATGTAGTGCCCTGTTTGGAC 57.800 50.000 0.00 0.00 38.35 4.02
1992 2051 1.136828 TGTAGTGCCCTGTTTGGACT 58.863 50.000 0.00 0.00 38.35 3.85
1993 2052 2.331166 TGTAGTGCCCTGTTTGGACTA 58.669 47.619 0.00 0.00 38.35 2.59
1994 2053 2.910319 TGTAGTGCCCTGTTTGGACTAT 59.090 45.455 0.00 0.00 38.35 2.12
1995 2054 4.098155 TGTAGTGCCCTGTTTGGACTATA 58.902 43.478 0.00 0.00 38.35 1.31
1996 2055 3.629142 AGTGCCCTGTTTGGACTATAC 57.371 47.619 0.00 0.00 38.35 1.47
1997 2056 2.238898 AGTGCCCTGTTTGGACTATACC 59.761 50.000 0.00 0.00 38.35 2.73
1998 2057 1.562475 TGCCCTGTTTGGACTATACCC 59.438 52.381 0.00 0.00 38.35 3.69
1999 2058 1.562475 GCCCTGTTTGGACTATACCCA 59.438 52.381 0.00 0.00 38.35 4.51
2000 2059 2.421529 GCCCTGTTTGGACTATACCCAG 60.422 54.545 0.00 0.00 38.35 4.45
2001 2060 2.844348 CCCTGTTTGGACTATACCCAGT 59.156 50.000 0.00 0.00 38.35 4.00
2002 2061 3.265995 CCCTGTTTGGACTATACCCAGTT 59.734 47.826 0.00 0.00 38.35 3.16
2003 2062 4.472108 CCCTGTTTGGACTATACCCAGTTA 59.528 45.833 0.00 0.00 38.35 2.24
2004 2063 5.132144 CCCTGTTTGGACTATACCCAGTTAT 59.868 44.000 0.00 0.00 38.35 1.89
2005 2064 6.055588 CCTGTTTGGACTATACCCAGTTATG 58.944 44.000 0.00 0.00 38.35 1.90
2006 2065 5.433526 TGTTTGGACTATACCCAGTTATGC 58.566 41.667 0.00 0.00 34.77 3.14
2007 2066 5.045505 TGTTTGGACTATACCCAGTTATGCA 60.046 40.000 0.00 0.00 34.77 3.96
2008 2067 5.702065 TTGGACTATACCCAGTTATGCAA 57.298 39.130 0.00 0.00 34.77 4.08
2009 2068 5.702065 TGGACTATACCCAGTTATGCAAA 57.298 39.130 0.00 0.00 0.00 3.68
2010 2069 6.260700 TGGACTATACCCAGTTATGCAAAT 57.739 37.500 0.00 0.00 0.00 2.32
2011 2070 6.296026 TGGACTATACCCAGTTATGCAAATC 58.704 40.000 0.00 0.00 0.00 2.17
2012 2071 6.126623 TGGACTATACCCAGTTATGCAAATCA 60.127 38.462 0.00 0.00 0.00 2.57
2013 2072 6.428159 GGACTATACCCAGTTATGCAAATCAG 59.572 42.308 0.00 0.00 0.00 2.90
2014 2073 5.765182 ACTATACCCAGTTATGCAAATCAGC 59.235 40.000 0.00 0.00 0.00 4.26
2015 2074 3.091633 ACCCAGTTATGCAAATCAGCT 57.908 42.857 0.00 0.00 34.99 4.24
2016 2075 3.434309 ACCCAGTTATGCAAATCAGCTT 58.566 40.909 0.00 0.00 34.99 3.74
2017 2076 3.194116 ACCCAGTTATGCAAATCAGCTTG 59.806 43.478 0.00 0.00 34.99 4.01
2018 2077 3.444742 CCCAGTTATGCAAATCAGCTTGA 59.555 43.478 0.00 0.00 34.99 3.02
2019 2078 4.098960 CCCAGTTATGCAAATCAGCTTGAT 59.901 41.667 0.00 0.00 39.09 2.57
2020 2079 5.041287 CCAGTTATGCAAATCAGCTTGATG 58.959 41.667 0.00 0.00 37.15 3.07
2021 2080 5.163591 CCAGTTATGCAAATCAGCTTGATGA 60.164 40.000 0.00 0.00 37.15 2.92
2022 2081 6.327154 CAGTTATGCAAATCAGCTTGATGAA 58.673 36.000 0.00 0.00 37.15 2.57
2023 2082 6.252869 CAGTTATGCAAATCAGCTTGATGAAC 59.747 38.462 0.00 0.00 37.15 3.18
2024 2083 4.794278 ATGCAAATCAGCTTGATGAACA 57.206 36.364 0.00 0.00 37.15 3.18
2025 2084 4.587584 TGCAAATCAGCTTGATGAACAA 57.412 36.364 0.00 0.00 37.15 2.83
2026 2085 5.142061 TGCAAATCAGCTTGATGAACAAT 57.858 34.783 0.00 0.00 37.15 2.71
2027 2086 5.543714 TGCAAATCAGCTTGATGAACAATT 58.456 33.333 0.00 0.00 37.15 2.32
2028 2087 5.992829 TGCAAATCAGCTTGATGAACAATTT 59.007 32.000 0.00 0.00 37.15 1.82
2029 2088 6.483974 TGCAAATCAGCTTGATGAACAATTTT 59.516 30.769 0.00 0.00 37.15 1.82
2030 2089 7.013529 GCAAATCAGCTTGATGAACAATTTTC 58.986 34.615 0.00 0.00 37.15 2.29
2031 2090 7.095355 GCAAATCAGCTTGATGAACAATTTTCT 60.095 33.333 0.00 0.00 37.15 2.52
2032 2091 9.414295 CAAATCAGCTTGATGAACAATTTTCTA 57.586 29.630 0.00 0.00 37.15 2.10
2045 2104 9.967451 TGAACAATTTTCTATATGTAGGGAACA 57.033 29.630 0.00 0.00 43.86 3.18
2060 2119 8.415950 TGTAGGGAACATTGAAACATAACATT 57.584 30.769 0.00 0.00 31.43 2.71
2061 2120 8.519526 TGTAGGGAACATTGAAACATAACATTC 58.480 33.333 0.00 0.00 31.43 2.67
2062 2121 7.781324 AGGGAACATTGAAACATAACATTCT 57.219 32.000 0.00 0.00 0.00 2.40
2063 2122 8.193953 AGGGAACATTGAAACATAACATTCTT 57.806 30.769 0.00 0.00 0.00 2.52
2064 2123 8.090214 AGGGAACATTGAAACATAACATTCTTG 58.910 33.333 0.00 0.00 0.00 3.02
2065 2124 8.087750 GGGAACATTGAAACATAACATTCTTGA 58.912 33.333 0.00 0.00 0.00 3.02
2066 2125 9.474920 GGAACATTGAAACATAACATTCTTGAA 57.525 29.630 0.00 0.00 0.00 2.69
2072 2131 9.958234 TTGAAACATAACATTCTTGAATTCGAA 57.042 25.926 0.00 0.00 0.00 3.71
2076 2135 9.778993 AACATAACATTCTTGAATTCGAATCAG 57.221 29.630 11.83 8.21 0.00 2.90
2077 2136 8.950210 ACATAACATTCTTGAATTCGAATCAGT 58.050 29.630 11.83 0.00 0.00 3.41
2078 2137 9.218359 CATAACATTCTTGAATTCGAATCAGTG 57.782 33.333 11.83 6.60 0.00 3.66
2079 2138 6.808008 ACATTCTTGAATTCGAATCAGTGT 57.192 33.333 11.83 7.17 0.00 3.55
2080 2139 7.905604 ACATTCTTGAATTCGAATCAGTGTA 57.094 32.000 11.83 0.00 0.00 2.90
2081 2140 7.968246 ACATTCTTGAATTCGAATCAGTGTAG 58.032 34.615 11.83 6.03 0.00 2.74
2082 2141 7.604164 ACATTCTTGAATTCGAATCAGTGTAGT 59.396 33.333 11.83 2.31 0.00 2.73
2083 2142 7.962964 TTCTTGAATTCGAATCAGTGTAGTT 57.037 32.000 11.83 0.00 0.00 2.24
2084 2143 7.962964 TCTTGAATTCGAATCAGTGTAGTTT 57.037 32.000 11.83 0.00 0.00 2.66
2085 2144 8.018677 TCTTGAATTCGAATCAGTGTAGTTTC 57.981 34.615 11.83 2.60 0.00 2.78
2086 2145 7.655732 TCTTGAATTCGAATCAGTGTAGTTTCA 59.344 33.333 11.83 5.31 0.00 2.69
2087 2146 7.351414 TGAATTCGAATCAGTGTAGTTTCAG 57.649 36.000 11.83 0.00 0.00 3.02
2088 2147 5.786401 ATTCGAATCAGTGTAGTTTCAGC 57.214 39.130 4.39 0.00 0.00 4.26
2089 2148 4.521130 TCGAATCAGTGTAGTTTCAGCT 57.479 40.909 0.00 0.00 0.00 4.24
2090 2149 4.883083 TCGAATCAGTGTAGTTTCAGCTT 58.117 39.130 0.00 0.00 0.00 3.74
2091 2150 4.686091 TCGAATCAGTGTAGTTTCAGCTTG 59.314 41.667 0.00 0.00 0.00 4.01
2092 2151 4.449068 CGAATCAGTGTAGTTTCAGCTTGT 59.551 41.667 0.00 0.00 0.00 3.16
2093 2152 5.633601 CGAATCAGTGTAGTTTCAGCTTGTA 59.366 40.000 0.00 0.00 0.00 2.41
2094 2153 6.183360 CGAATCAGTGTAGTTTCAGCTTGTAG 60.183 42.308 0.00 0.00 0.00 2.74
2095 2154 4.307432 TCAGTGTAGTTTCAGCTTGTAGC 58.693 43.478 0.00 0.00 42.84 3.58
2109 2168 5.629079 GCTTGTAGCTCATAAGGTTTGTT 57.371 39.130 0.00 0.00 38.45 2.83
2110 2169 6.013842 GCTTGTAGCTCATAAGGTTTGTTT 57.986 37.500 0.00 0.00 38.45 2.83
2111 2170 5.858581 GCTTGTAGCTCATAAGGTTTGTTTG 59.141 40.000 0.00 0.00 38.45 2.93
2112 2171 6.515035 GCTTGTAGCTCATAAGGTTTGTTTGT 60.515 38.462 0.00 0.00 38.45 2.83
2113 2172 6.312399 TGTAGCTCATAAGGTTTGTTTGTG 57.688 37.500 0.00 0.00 34.40 3.33
2114 2173 4.243007 AGCTCATAAGGTTTGTTTGTGC 57.757 40.909 0.00 0.00 0.00 4.57
2115 2174 3.636300 AGCTCATAAGGTTTGTTTGTGCA 59.364 39.130 0.00 0.00 31.24 4.57
2116 2175 4.099266 AGCTCATAAGGTTTGTTTGTGCAA 59.901 37.500 0.00 0.00 31.24 4.08
2117 2176 4.990426 GCTCATAAGGTTTGTTTGTGCAAT 59.010 37.500 0.00 0.00 0.00 3.56
2118 2177 6.015519 AGCTCATAAGGTTTGTTTGTGCAATA 60.016 34.615 0.00 0.00 31.24 1.90
2119 2178 6.644592 GCTCATAAGGTTTGTTTGTGCAATAA 59.355 34.615 0.00 0.00 0.00 1.40
2120 2179 7.359181 GCTCATAAGGTTTGTTTGTGCAATAAC 60.359 37.037 0.00 0.00 0.00 1.89
2121 2180 7.492524 TCATAAGGTTTGTTTGTGCAATAACA 58.507 30.769 10.01 10.01 32.76 2.41
2122 2181 7.436673 TCATAAGGTTTGTTTGTGCAATAACAC 59.563 33.333 12.87 4.88 41.10 3.32
2131 2190 4.039151 TGTGCAATAACACACACTTTGG 57.961 40.909 0.00 0.00 45.36 3.28
2132 2191 3.181482 TGTGCAATAACACACACTTTGGG 60.181 43.478 0.00 0.00 45.36 4.12
2133 2192 2.363680 TGCAATAACACACACTTTGGGG 59.636 45.455 0.00 0.00 29.81 4.96
2134 2193 2.866065 GCAATAACACACACTTTGGGGC 60.866 50.000 0.00 0.00 29.81 5.80
2135 2194 2.627699 CAATAACACACACTTTGGGGCT 59.372 45.455 0.00 0.00 29.81 5.19
2136 2195 3.799432 ATAACACACACTTTGGGGCTA 57.201 42.857 0.00 0.00 29.81 3.93
2137 2196 2.445682 AACACACACTTTGGGGCTAA 57.554 45.000 0.00 0.00 29.81 3.09
2138 2197 2.445682 ACACACACTTTGGGGCTAAA 57.554 45.000 0.00 0.00 29.81 1.85
2139 2198 2.741145 ACACACACTTTGGGGCTAAAA 58.259 42.857 0.00 0.00 29.81 1.52
2140 2199 3.304829 ACACACACTTTGGGGCTAAAAT 58.695 40.909 0.00 0.00 29.81 1.82
2141 2200 3.709141 ACACACACTTTGGGGCTAAAATT 59.291 39.130 0.00 0.00 29.81 1.82
2142 2201 4.163268 ACACACACTTTGGGGCTAAAATTT 59.837 37.500 0.00 0.00 29.81 1.82
2143 2202 5.122519 CACACACTTTGGGGCTAAAATTTT 58.877 37.500 8.75 8.75 0.00 1.82
2144 2203 5.007528 CACACACTTTGGGGCTAAAATTTTG 59.992 40.000 13.76 5.05 0.00 2.44
2145 2204 5.104735 ACACACTTTGGGGCTAAAATTTTGA 60.105 36.000 13.76 0.00 0.00 2.69
2146 2205 5.819901 CACACTTTGGGGCTAAAATTTTGAA 59.180 36.000 13.76 0.00 0.00 2.69
2147 2206 6.486320 CACACTTTGGGGCTAAAATTTTGAAT 59.514 34.615 13.76 0.00 0.00 2.57
2148 2207 6.486320 ACACTTTGGGGCTAAAATTTTGAATG 59.514 34.615 13.76 2.81 0.00 2.67
2149 2208 6.486320 CACTTTGGGGCTAAAATTTTGAATGT 59.514 34.615 13.76 3.18 0.00 2.71
2150 2209 7.659390 CACTTTGGGGCTAAAATTTTGAATGTA 59.341 33.333 13.76 0.00 0.00 2.29
2151 2210 7.877612 ACTTTGGGGCTAAAATTTTGAATGTAG 59.122 33.333 13.76 2.95 0.00 2.74
2152 2211 6.926630 TGGGGCTAAAATTTTGAATGTAGT 57.073 33.333 13.76 0.00 0.00 2.73
2153 2212 6.696411 TGGGGCTAAAATTTTGAATGTAGTG 58.304 36.000 13.76 0.00 0.00 2.74
2154 2213 5.580691 GGGGCTAAAATTTTGAATGTAGTGC 59.419 40.000 13.76 4.13 0.00 4.40
2155 2214 5.580691 GGGCTAAAATTTTGAATGTAGTGCC 59.419 40.000 13.76 11.20 0.00 5.01
2156 2215 5.580691 GGCTAAAATTTTGAATGTAGTGCCC 59.419 40.000 13.76 0.00 0.00 5.36
2157 2216 6.398095 GCTAAAATTTTGAATGTAGTGCCCT 58.602 36.000 13.76 0.00 0.00 5.19
2255 2319 1.834263 GTTCATCCTCCTGCAGGTACT 59.166 52.381 31.58 12.75 43.95 2.73
2320 2384 8.621286 ACAGAACTTGTAAAAATGATCGAGTTT 58.379 29.630 0.00 0.00 38.56 2.66
2375 2439 0.179097 GGCCAGCGAAAGACTAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
2434 2498 5.303078 GCTAGAATCCCTGTTGAGAGATACA 59.697 44.000 0.00 0.00 0.00 2.29
2470 2534 2.590092 GCAGGCGGGGTTGATAGT 59.410 61.111 0.00 0.00 0.00 2.12
2521 2585 3.181505 TGTGTGTTGGTGTTAAAGCTTCG 60.182 43.478 0.00 0.00 0.00 3.79
2527 2591 2.423892 TGGTGTTAAAGCTTCGCACAAA 59.576 40.909 21.39 11.57 0.00 2.83
2560 2624 4.136796 CTGGTGGAATTGTTCTGAGTTCA 58.863 43.478 0.00 0.00 0.00 3.18
2574 2638 0.839946 AGTTCAAGTGGCTCTGGTGT 59.160 50.000 0.00 0.00 0.00 4.16
2599 2663 3.395941 CCTACTTTATGGAGCCAAGGGAT 59.604 47.826 0.00 0.00 0.00 3.85
2602 2666 1.225373 TTATGGAGCCAAGGGATGCT 58.775 50.000 0.00 0.00 41.42 3.79
2635 2699 6.876789 TGAACAACACTGAAGTAAAACTCTCA 59.123 34.615 0.00 0.00 0.00 3.27
2638 2702 5.871396 ACACTGAAGTAAAACTCTCAGGA 57.129 39.130 16.43 0.00 37.52 3.86
2662 2726 1.153667 GAGAGCTGAGGAGTTGGCG 60.154 63.158 0.00 0.00 0.00 5.69
2703 2767 2.366916 CAAGAATAGCAGAGTCCCGGAT 59.633 50.000 0.73 0.00 0.00 4.18
2818 2882 2.238084 TCAGTGACAGGGATAGCAGT 57.762 50.000 0.00 0.00 0.00 4.40
2837 2901 2.233922 AGTAGTGAATCGGACCCAAGTG 59.766 50.000 0.00 0.00 0.00 3.16
2915 2979 5.546499 TCCCTTGGTACTGTAGAAGAATTGT 59.454 40.000 7.70 0.00 0.00 2.71
3007 3074 3.921119 TTGGACATGCATGTGAAGAAC 57.079 42.857 35.92 19.74 41.95 3.01
3008 3075 2.861274 TGGACATGCATGTGAAGAACA 58.139 42.857 35.92 19.95 41.95 3.18
3043 3110 2.100989 GTGATCTCCGGACCTAACACT 58.899 52.381 0.00 0.00 0.00 3.55
3077 3144 3.451178 TGCTACTATGAAGACCTTGGGAC 59.549 47.826 0.00 0.00 0.00 4.46
3344 3411 5.082059 GCACAAGTTGTATCAACAGATTCG 58.918 41.667 8.49 0.00 36.83 3.34
3435 3502 9.050601 GCATTTTGAAGTATCTTGCTAGTAGAT 57.949 33.333 0.00 12.28 36.39 1.98
3446 3513 6.113411 TCTTGCTAGTAGATTAAACTTGGCC 58.887 40.000 0.00 0.00 0.00 5.36
3449 3516 4.874396 GCTAGTAGATTAAACTTGGCCGTT 59.126 41.667 0.00 0.00 0.00 4.44
3485 3552 4.046938 TGCTGATCTAAGCCGTCTTAAG 57.953 45.455 2.82 0.00 42.83 1.85
3531 3598 4.449131 TGCTGCAATGGAATTTTGTTTGA 58.551 34.783 0.00 0.00 31.22 2.69
3698 3765 4.659115 AGGAACGCCAAGGTTTACTTTAT 58.341 39.130 0.00 0.00 37.29 1.40
4144 4213 3.184581 AGCGACGATGAAAACAAGAGTTC 59.815 43.478 0.00 0.00 36.84 3.01
4154 4223 7.815840 TGAAAACAAGAGTTCATATGTTCCA 57.184 32.000 1.90 0.00 36.84 3.53
4184 4253 3.412386 AGACAAAGTGTATGTGGAAGGC 58.588 45.455 0.00 0.00 0.00 4.35
4193 4262 3.732849 GTGGAAGGCCTGGGAGGG 61.733 72.222 5.69 0.00 35.37 4.30
4356 4425 1.606668 CACAAGGAAAGGTGCGCTTTA 59.393 47.619 9.73 0.00 0.00 1.85
4426 4495 5.001237 TCATCATTTAGCTTGCAACATGG 57.999 39.130 0.00 0.00 0.00 3.66
4432 4509 5.521906 TTTAGCTTGCAACATGGTAAACA 57.478 34.783 14.14 0.00 36.92 2.83
4434 4511 6.825944 TTAGCTTGCAACATGGTAAACATA 57.174 33.333 0.00 0.00 37.84 2.29
4437 4514 6.332630 AGCTTGCAACATGGTAAACATATTC 58.667 36.000 0.00 0.00 37.84 1.75
4439 4516 5.242069 TGCAACATGGTAAACATATTCGG 57.758 39.130 0.00 0.00 37.84 4.30
4444 4521 6.072112 ACATGGTAAACATATTCGGAATGC 57.928 37.500 13.37 0.00 37.84 3.56
4453 4530 2.214376 ATTCGGAATGCTGGAAACCA 57.786 45.000 1.68 0.00 0.00 3.67
4454 4531 1.243902 TTCGGAATGCTGGAAACCAC 58.756 50.000 0.00 0.00 0.00 4.16
4455 4532 0.400213 TCGGAATGCTGGAAACCACT 59.600 50.000 0.00 0.00 0.00 4.00
4456 4533 1.202879 TCGGAATGCTGGAAACCACTT 60.203 47.619 0.00 0.00 0.00 3.16
4457 4534 2.039216 TCGGAATGCTGGAAACCACTTA 59.961 45.455 0.00 0.00 0.00 2.24
4467 4544 5.627040 GCTGGAAACCACTTATAGTGTAGCT 60.627 44.000 6.13 0.00 44.50 3.32
4468 4545 6.368779 TGGAAACCACTTATAGTGTAGCTT 57.631 37.500 0.00 0.00 44.50 3.74
4469 4546 6.775708 TGGAAACCACTTATAGTGTAGCTTT 58.224 36.000 0.00 0.00 44.50 3.51
4476 4553 7.883311 ACCACTTATAGTGTAGCTTTTGACATT 59.117 33.333 0.00 0.00 44.50 2.71
4477 4554 8.177663 CCACTTATAGTGTAGCTTTTGACATTG 58.822 37.037 0.00 0.00 44.50 2.82
4478 4555 8.721478 CACTTATAGTGTAGCTTTTGACATTGT 58.279 33.333 0.00 0.00 41.19 2.71
4480 4557 9.760660 CTTATAGTGTAGCTTTTGACATTGTTC 57.239 33.333 0.00 0.00 0.00 3.18
4482 4559 6.639632 AGTGTAGCTTTTGACATTGTTCAT 57.360 33.333 0.00 0.00 0.00 2.57
4484 4561 7.584987 AGTGTAGCTTTTGACATTGTTCATAC 58.415 34.615 0.00 0.00 0.00 2.39
4485 4562 7.228507 AGTGTAGCTTTTGACATTGTTCATACA 59.771 33.333 0.00 0.00 0.00 2.29
4512 4589 7.681939 ATATTTCGTCAACATAACTGTGGTT 57.318 32.000 0.00 0.00 35.22 3.67
4517 4594 4.153475 CGTCAACATAACTGTGGTTAAGGG 59.847 45.833 0.00 0.00 40.69 3.95
4529 4606 1.272480 GGTTAAGGGCCAATGGTGTCT 60.272 52.381 6.18 0.00 0.00 3.41
4540 4617 2.191128 ATGGTGTCTCTTTGACTGCC 57.809 50.000 0.00 0.00 45.54 4.85
4564 4720 6.074516 CCGTGTCCGTGATAAAATGTAGTATG 60.075 42.308 0.00 0.00 0.00 2.39
4620 4779 5.894393 TCTAGGTTCTCAGACCCTATTCAAG 59.106 44.000 0.00 0.00 40.73 3.02
4633 4792 5.305644 ACCCTATTCAAGTATCTGTAGGCTG 59.694 44.000 0.00 0.00 0.00 4.85
4669 4828 4.079970 AGGTCTCGTTAACACTCATCAGA 58.920 43.478 6.39 0.00 0.00 3.27
4718 4877 8.839343 CATAGAAACATGGTGTATTCAATGCTA 58.161 33.333 0.00 0.00 0.00 3.49
4729 4888 7.277098 GGTGTATTCAATGCTAGTTCGTTCTAA 59.723 37.037 0.00 0.00 0.00 2.10
4748 4907 5.060506 TCTAACCGTTTCAGAAAATCTGCA 58.939 37.500 0.00 0.00 43.95 4.41
4757 4916 0.169009 GAAAATCTGCACTGCCCGAC 59.831 55.000 0.00 0.00 0.00 4.79
4808 4968 1.275573 AGGACGGACTCAACTTTAGGC 59.724 52.381 0.00 0.00 0.00 3.93
4820 4980 7.512992 ACTCAACTTTAGGCTTGCATATATCT 58.487 34.615 0.00 0.00 0.00 1.98
5097 5258 2.470821 CGGCTTTAGTTCGGGTAGATG 58.529 52.381 0.00 0.00 0.00 2.90
5098 5259 2.210961 GGCTTTAGTTCGGGTAGATGC 58.789 52.381 0.00 0.00 0.00 3.91
5099 5260 2.419574 GGCTTTAGTTCGGGTAGATGCA 60.420 50.000 0.00 0.00 0.00 3.96
5100 5261 2.866762 GCTTTAGTTCGGGTAGATGCAG 59.133 50.000 0.00 0.00 0.00 4.41
5101 5262 2.596904 TTAGTTCGGGTAGATGCAGC 57.403 50.000 0.00 0.00 0.00 5.25
5102 5263 0.384309 TAGTTCGGGTAGATGCAGCG 59.616 55.000 0.00 0.00 0.00 5.18
5103 5264 2.202878 TTCGGGTAGATGCAGCGC 60.203 61.111 0.00 0.00 0.00 5.92
5104 5265 3.012859 TTCGGGTAGATGCAGCGCA 62.013 57.895 11.47 5.73 44.86 6.09
5244 5407 2.224079 CAGCGTATGATTGGTGTATGGC 59.776 50.000 0.00 0.00 0.00 4.40
5262 5425 7.228507 GTGTATGGCCAACATTGTCTATTATCA 59.771 37.037 10.96 0.00 41.03 2.15
5263 5426 6.639632 ATGGCCAACATTGTCTATTATCAC 57.360 37.500 10.96 0.00 35.97 3.06
5264 5427 4.574421 TGGCCAACATTGTCTATTATCACG 59.426 41.667 0.61 0.00 0.00 4.35
5268 5440 6.183360 GCCAACATTGTCTATTATCACGTTGA 60.183 38.462 0.00 0.00 34.57 3.18
5271 5443 9.773328 CAACATTGTCTATTATCACGTTGATTT 57.227 29.630 5.94 0.00 38.26 2.17
5287 5459 3.509442 TGATTTTTCAATCCTGCCCTGT 58.491 40.909 0.00 0.00 38.50 4.00
5288 5460 4.671831 TGATTTTTCAATCCTGCCCTGTA 58.328 39.130 0.00 0.00 38.50 2.74
5302 5474 2.420687 GCCCTGTAATGTTCTCCCTCAG 60.421 54.545 0.00 0.00 0.00 3.35
5303 5475 2.840651 CCCTGTAATGTTCTCCCTCAGT 59.159 50.000 0.00 0.00 0.00 3.41
5316 5488 5.871834 TCTCCCTCAGTATAAGCTAGACTC 58.128 45.833 0.00 0.00 0.00 3.36
5334 5506 3.321950 ACTCTATTATTCAGCAGGCCCT 58.678 45.455 0.00 0.00 0.00 5.19
5335 5507 3.072184 ACTCTATTATTCAGCAGGCCCTG 59.928 47.826 6.32 6.32 34.12 4.45
5347 5550 0.995024 AGGCCCTGTAATGTTCTGCT 59.005 50.000 0.00 0.00 0.00 4.24
5353 5556 5.183228 GCCCTGTAATGTTCTGCTAAGTTA 58.817 41.667 0.00 0.00 0.00 2.24
5360 5563 9.891828 TGTAATGTTCTGCTAAGTTAATGTTTG 57.108 29.630 0.00 0.00 0.00 2.93
5363 5566 7.561021 TGTTCTGCTAAGTTAATGTTTGACA 57.439 32.000 0.00 0.00 0.00 3.58
5368 5571 9.890629 TCTGCTAAGTTAATGTTTGACATCTAT 57.109 29.630 0.00 0.00 37.97 1.98
5373 5576 7.630242 AGTTAATGTTTGACATCTATGGTGG 57.370 36.000 0.00 0.00 37.97 4.61
5374 5577 4.989279 AATGTTTGACATCTATGGTGGC 57.011 40.909 0.00 0.00 37.97 5.01
5392 5601 2.436646 ATTTGGCAGGGACGAGCG 60.437 61.111 0.00 0.00 35.23 5.03
5434 5643 3.121030 GCGGCTACTGGCAGTGTG 61.121 66.667 29.65 21.47 44.01 3.82
5524 5733 2.584418 CACGAGCTGGAGATGGCG 60.584 66.667 1.44 0.00 0.00 5.69
5532 5741 1.786049 CTGGAGATGGCGATCGACGA 61.786 60.000 21.57 7.50 45.77 4.20
5542 5751 3.356639 GATCGACGAGTGCAGGCCA 62.357 63.158 5.01 0.00 0.00 5.36
5554 5763 1.832912 CAGGCCATACCAGGTCCTC 59.167 63.158 5.01 0.00 43.14 3.71
5602 5811 3.482783 GTGAAGGAGTGCGCGCTC 61.483 66.667 36.79 36.79 34.89 5.03
5706 5915 5.748630 TCGAGTGAATGAAGATACAAATCGG 59.251 40.000 0.00 0.00 37.19 4.18
5714 5923 1.078072 ATACAAATCGGTGGCGGCA 60.078 52.632 7.97 7.97 0.00 5.69
5715 5924 0.465460 ATACAAATCGGTGGCGGCAT 60.465 50.000 17.19 0.00 0.00 4.40
5764 5995 4.111198 CAGCTCTACATCACAGATCACAC 58.889 47.826 0.00 0.00 0.00 3.82
5793 6035 2.364324 AGTTCTCCTGCGTGTTGTAGAA 59.636 45.455 0.00 0.00 30.84 2.10
5822 6064 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
5828 6070 2.031245 ACACACACACACACAAACACAG 60.031 45.455 0.00 0.00 0.00 3.66
5829 6071 2.031245 CACACACACACACAAACACAGT 60.031 45.455 0.00 0.00 0.00 3.55
5842 6084 5.354234 CACAAACACAGTAGAGTTGGAACTT 59.646 40.000 0.00 0.00 39.88 2.66
5880 6130 8.593492 AAAGAAAATAATGCAACAGAGTTTCC 57.407 30.769 0.00 0.00 0.00 3.13
5882 6132 6.494835 AGAAAATAATGCAACAGAGTTTCCCT 59.505 34.615 0.00 0.00 0.00 4.20
5883 6133 5.649782 AATAATGCAACAGAGTTTCCCTG 57.350 39.130 0.00 0.00 37.64 4.45
5884 6134 1.915141 ATGCAACAGAGTTTCCCTGG 58.085 50.000 0.00 0.00 36.03 4.45
5885 6135 0.823356 TGCAACAGAGTTTCCCTGGC 60.823 55.000 0.00 0.00 36.03 4.85
5887 6137 0.895559 CAACAGAGTTTCCCTGGCCC 60.896 60.000 0.00 0.00 36.03 5.80
5889 6139 1.001641 CAGAGTTTCCCTGGCCCTG 60.002 63.158 0.00 0.00 0.00 4.45
5891 6141 1.068352 AGAGTTTCCCTGGCCCTGTT 61.068 55.000 0.00 0.00 0.00 3.16
5893 6143 1.074889 GAGTTTCCCTGGCCCTGTTTA 59.925 52.381 0.00 0.00 0.00 2.01
5894 6144 1.203013 AGTTTCCCTGGCCCTGTTTAC 60.203 52.381 0.00 0.00 0.00 2.01
5895 6145 0.854218 TTTCCCTGGCCCTGTTTACA 59.146 50.000 0.00 0.00 0.00 2.41
5907 6185 3.605634 CCTGTTTACAATCCATCCACGA 58.394 45.455 0.00 0.00 0.00 4.35
5946 6225 0.893270 CGGCCTGGTGACATTGGAAA 60.893 55.000 0.00 0.00 41.51 3.13
5955 6237 5.450453 TGGTGACATTGGAAAAAGAGGTTA 58.550 37.500 0.00 0.00 33.40 2.85
5968 6250 1.957765 GAGGTTAGAGGGACACGGGC 61.958 65.000 0.00 0.00 0.00 6.13
5969 6251 1.988406 GGTTAGAGGGACACGGGCT 60.988 63.158 0.00 0.00 0.00 5.19
6040 6323 5.306937 TGGTTGATTCTGGTGGATATACGAT 59.693 40.000 0.00 0.00 0.00 3.73
6061 6344 1.079888 CGCCATTCAAGTTTGCCCC 60.080 57.895 0.00 0.00 0.00 5.80
6062 6345 1.079888 GCCATTCAAGTTTGCCCCG 60.080 57.895 0.00 0.00 0.00 5.73
6109 6392 0.774276 TTGGTGGGTAGGTTCATGCA 59.226 50.000 0.00 0.00 0.00 3.96
6188 6476 2.159043 GCCGAGGTCTCATCTTTCATCA 60.159 50.000 0.00 0.00 0.00 3.07
6193 6481 5.063186 CGAGGTCTCATCTTTCATCAGTTTG 59.937 44.000 0.00 0.00 0.00 2.93
6194 6482 5.874093 AGGTCTCATCTTTCATCAGTTTGT 58.126 37.500 0.00 0.00 0.00 2.83
6195 6483 6.302269 AGGTCTCATCTTTCATCAGTTTGTT 58.698 36.000 0.00 0.00 0.00 2.83
6220 6519 3.577805 ATACCAGGGGCTATGTTTCAC 57.422 47.619 0.00 0.00 0.00 3.18
6226 6525 2.026822 AGGGGCTATGTTTCACTCACAG 60.027 50.000 0.00 0.00 0.00 3.66
6227 6526 1.740025 GGGCTATGTTTCACTCACAGC 59.260 52.381 0.00 0.00 0.00 4.40
6228 6527 2.616510 GGGCTATGTTTCACTCACAGCT 60.617 50.000 0.00 0.00 0.00 4.24
6262 6575 4.469657 TGCACAGGAACAAAGAGGTAAAT 58.530 39.130 0.00 0.00 0.00 1.40
6269 6582 6.486657 CAGGAACAAAGAGGTAAATTCACTCA 59.513 38.462 6.73 0.00 33.76 3.41
6272 6585 7.308049 GGAACAAAGAGGTAAATTCACTCACTC 60.308 40.741 6.73 0.00 33.76 3.51
6283 6596 1.068588 TCACTCACTCAAGGTCAACGG 59.931 52.381 0.00 0.00 0.00 4.44
6287 6600 2.429930 CTCAAGGTCAACGGCCCA 59.570 61.111 0.00 0.00 0.00 5.36
6303 6616 1.666553 CCAGCGCGTAACCAGTTGA 60.667 57.895 8.43 0.00 0.00 3.18
6320 6637 5.107182 CCAGTTGATTCTATGATGCTAAGCG 60.107 44.000 0.00 0.00 0.00 4.68
6326 6643 4.757799 TCTATGATGCTAAGCGAGAGAC 57.242 45.455 0.00 0.00 0.00 3.36
6355 6672 2.515523 ATGCTCCACGGCTGATGC 60.516 61.111 0.00 0.00 38.76 3.91
6360 6677 0.811616 CTCCACGGCTGATGCTAACC 60.812 60.000 0.00 0.00 39.59 2.85
6365 6699 2.228822 CACGGCTGATGCTAACCTTTTT 59.771 45.455 0.00 0.00 39.59 1.94
6397 6731 7.568349 ACTACAATACACATCCAATGTCAGAT 58.432 34.615 0.00 0.00 42.70 2.90
6439 6773 1.293179 CCTCAGGCACGTCACATGA 59.707 57.895 0.00 2.85 0.00 3.07
6442 6776 0.321346 TCAGGCACGTCACATGACAT 59.679 50.000 12.32 0.00 44.99 3.06
6459 6793 6.016024 ACATGACATACTTGCTGACATTTGTT 60.016 34.615 0.00 0.00 28.79 2.83
6463 6797 7.042797 ACATACTTGCTGACATTTGTTTTCT 57.957 32.000 0.00 0.00 0.00 2.52
6466 6800 9.630098 CATACTTGCTGACATTTGTTTTCTTAT 57.370 29.630 0.00 0.00 0.00 1.73
6496 6830 8.725256 AGACTACTCCCTCTGTACAGAAATATA 58.275 37.037 25.14 13.23 36.94 0.86
6499 6833 9.575868 CTACTCCCTCTGTACAGAAATATAAGA 57.424 37.037 25.14 12.92 36.94 2.10
6501 6835 8.062536 ACTCCCTCTGTACAGAAATATAAGAGT 58.937 37.037 25.14 21.68 36.94 3.24
6502 6836 8.239038 TCCCTCTGTACAGAAATATAAGAGTG 57.761 38.462 25.14 9.70 36.94 3.51
6503 6837 7.839705 TCCCTCTGTACAGAAATATAAGAGTGT 59.160 37.037 25.14 0.00 36.94 3.55
6505 6839 9.877178 CCTCTGTACAGAAATATAAGAGTGTTT 57.123 33.333 25.14 0.00 36.94 2.83
6536 6870 7.629157 TGTTTAGAGATTGAGAGAGAGAGAGA 58.371 38.462 0.00 0.00 0.00 3.10
6539 6873 8.547481 TTAGAGATTGAGAGAGAGAGAGAGTA 57.453 38.462 0.00 0.00 0.00 2.59
6540 6874 7.437713 AGAGATTGAGAGAGAGAGAGAGTAA 57.562 40.000 0.00 0.00 0.00 2.24
6541 6875 7.861629 AGAGATTGAGAGAGAGAGAGAGTAAA 58.138 38.462 0.00 0.00 0.00 2.01
6545 6881 3.275999 AGAGAGAGAGAGAGTAAACGGC 58.724 50.000 0.00 0.00 0.00 5.68
6547 6883 3.013921 AGAGAGAGAGAGTAAACGGCAG 58.986 50.000 0.00 0.00 0.00 4.85
6552 6888 2.987821 GAGAGAGTAAACGGCAGTGTTC 59.012 50.000 0.00 0.00 0.00 3.18
6578 6914 9.690434 CACTTTAGAACACGATAAATCTTAAGC 57.310 33.333 0.00 0.00 33.89 3.09
6579 6915 9.431887 ACTTTAGAACACGATAAATCTTAAGCA 57.568 29.630 0.00 0.00 33.89 3.91
6589 6928 8.499162 ACGATAAATCTTAAGCAGCATCATAAC 58.501 33.333 0.00 0.00 0.00 1.89
6613 6952 2.542766 ATATTTGTTTCTGCGTGGCG 57.457 45.000 0.00 0.00 0.00 5.69
6618 6957 1.014044 TGTTTCTGCGTGGCGATCTC 61.014 55.000 0.00 0.00 0.00 2.75
6621 6960 0.382158 TTCTGCGTGGCGATCTCTAG 59.618 55.000 0.00 0.00 0.00 2.43
6625 6964 0.100682 GCGTGGCGATCTCTAGACAA 59.899 55.000 0.00 0.00 0.00 3.18
6633 7146 4.096682 GGCGATCTCTAGACAACACTTACT 59.903 45.833 0.00 0.00 0.00 2.24
6635 7148 6.183360 GGCGATCTCTAGACAACACTTACTAA 60.183 42.308 0.00 0.00 0.00 2.24
6686 7199 9.866655 AATAATAATAGTTCTTGATTGGCCTGA 57.133 29.630 3.32 0.00 0.00 3.86
6688 7201 5.441718 AATAGTTCTTGATTGGCCTGAGA 57.558 39.130 3.32 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 63 4.271590 TCGCGATCAACATTACATTTGG 57.728 40.909 3.71 0.00 0.00 3.28
62 68 4.923281 CCTATCATCGCGATCAACATTACA 59.077 41.667 20.85 0.00 35.39 2.41
74 80 3.675225 ACGATTTTGATCCTATCATCGCG 59.325 43.478 0.00 0.00 40.85 5.87
95 102 4.453819 AGTGATGCAGCTCTTGAGTTTTAC 59.546 41.667 2.53 0.00 0.00 2.01
120 127 4.162040 CAGAATAGACCCCTGCAGAAAT 57.838 45.455 17.39 0.00 0.00 2.17
153 161 2.356913 CACACCACGATGTCGGCA 60.357 61.111 7.38 0.00 44.95 5.69
177 185 1.219124 GAGATGGAACTGCGCCTCA 59.781 57.895 4.18 0.00 0.00 3.86
216 224 4.128139 CGAACCCGGTGTTTGTGA 57.872 55.556 0.00 0.00 37.29 3.58
222 230 2.111669 GGGAAACGAACCCGGTGT 59.888 61.111 0.00 0.00 40.78 4.16
244 252 9.131791 AGTGTAAAGATTCATAGTGTTTTTGGT 57.868 29.630 0.00 0.00 0.00 3.67
252 261 4.576463 GGGGCAGTGTAAAGATTCATAGTG 59.424 45.833 0.00 0.00 0.00 2.74
273 283 3.328382 TCGAATTGTAGGACTGTTGGG 57.672 47.619 0.00 0.00 0.00 4.12
292 302 6.640907 GTGTGAAATGAGTATGGTTTTGGTTC 59.359 38.462 0.00 0.00 0.00 3.62
337 347 1.292546 AGCTCCTTCCCTAGGTAAGCT 59.707 52.381 8.58 10.79 45.02 3.74
361 371 2.432628 GTCGACAGGACCTTGCCG 60.433 66.667 11.55 0.00 39.90 5.69
397 407 1.004918 CTTCCCTTCGGCGAACACT 60.005 57.895 19.83 0.00 0.00 3.55
535 545 2.431057 AGAAACGGCTACGAATCTGGAT 59.569 45.455 0.00 0.00 44.60 3.41
537 547 2.159226 AGAGAAACGGCTACGAATCTGG 60.159 50.000 0.00 0.00 44.60 3.86
549 559 4.035208 GGCCAATTATACACAGAGAAACGG 59.965 45.833 0.00 0.00 0.00 4.44
550 560 4.035208 GGGCCAATTATACACAGAGAAACG 59.965 45.833 4.39 0.00 0.00 3.60
556 566 3.738982 CGATGGGCCAATTATACACAGA 58.261 45.455 11.89 0.00 0.00 3.41
571 581 0.242825 GAATGGATGCATGCGATGGG 59.757 55.000 14.09 0.00 0.00 4.00
575 586 1.529010 GGGGAATGGATGCATGCGA 60.529 57.895 14.09 2.48 0.00 5.10
576 587 1.829096 TGGGGAATGGATGCATGCG 60.829 57.895 14.09 0.00 0.00 4.73
594 605 7.296856 TGAATGGATGGATATACAACAATGGT 58.703 34.615 0.00 0.00 28.99 3.55
627 638 6.665992 TCAGAGAAATAACCTACACTGTGT 57.334 37.500 18.51 18.51 0.00 3.72
699 712 9.775854 AGAATAATTCACATTCCTCTCATACTG 57.224 33.333 0.00 0.00 33.67 2.74
700 713 9.775854 CAGAATAATTCACATTCCTCTCATACT 57.224 33.333 0.00 0.00 33.67 2.12
701 714 8.502387 GCAGAATAATTCACATTCCTCTCATAC 58.498 37.037 0.00 0.00 33.67 2.39
702 715 8.435187 AGCAGAATAATTCACATTCCTCTCATA 58.565 33.333 0.00 0.00 33.67 2.15
703 716 7.288560 AGCAGAATAATTCACATTCCTCTCAT 58.711 34.615 0.00 0.00 33.67 2.90
742 755 0.796312 GCAGCTGAAAATTCGTCGGA 59.204 50.000 20.43 0.00 0.00 4.55
817 832 2.047844 GCACGCCTGAGCTTCTGA 60.048 61.111 0.00 0.00 36.60 3.27
822 837 2.027625 GTTTACGCACGCCTGAGCT 61.028 57.895 0.00 0.00 36.60 4.09
859 888 0.529378 AGGGCTTAACGTACACGAGG 59.471 55.000 9.04 0.00 43.02 4.63
880 910 2.757868 CAAAACCCCATTCCGCTTCATA 59.242 45.455 0.00 0.00 0.00 2.15
890 920 3.106827 CAGCCTTATCCAAAACCCCATT 58.893 45.455 0.00 0.00 0.00 3.16
978 1009 2.727392 CGCCGGAATGGTAGTGGGA 61.727 63.158 5.05 0.00 41.21 4.37
980 1011 2.203015 CCGCCGGAATGGTAGTGG 60.203 66.667 5.05 0.00 41.21 4.00
981 1012 2.895372 GCCGCCGGAATGGTAGTG 60.895 66.667 7.68 0.00 41.21 2.74
1024 1058 1.449778 GGCGGAGGTAGAGGTTTGC 60.450 63.158 0.00 0.00 0.00 3.68
1051 1085 1.697982 GGAAACTGTACAGGGGAGTGT 59.302 52.381 26.12 0.92 34.21 3.55
1197 1234 2.125552 CATTCCAGCGCGGACTCA 60.126 61.111 18.39 6.98 46.36 3.41
1356 1393 4.460683 AAATCCAGCGGCGCCGTA 62.461 61.111 45.02 29.62 42.09 4.02
1503 1540 4.959596 GGCATCTCCTCGGCGAGC 62.960 72.222 30.55 18.92 0.00 5.03
1523 1560 1.765314 CAGTCCCTTACCTCCCATCTG 59.235 57.143 0.00 0.00 0.00 2.90
1524 1561 1.972207 GCAGTCCCTTACCTCCCATCT 60.972 57.143 0.00 0.00 0.00 2.90
1526 1563 0.044855 AGCAGTCCCTTACCTCCCAT 59.955 55.000 0.00 0.00 0.00 4.00
1527 1564 0.178873 AAGCAGTCCCTTACCTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
1528 1565 0.542333 GAAGCAGTCCCTTACCTCCC 59.458 60.000 0.00 0.00 0.00 4.30
1531 1568 0.615850 GCTGAAGCAGTCCCTTACCT 59.384 55.000 0.00 0.00 41.59 3.08
1532 1569 0.615850 AGCTGAAGCAGTCCCTTACC 59.384 55.000 4.90 0.00 45.16 2.85
1533 1570 2.289694 TGAAGCTGAAGCAGTCCCTTAC 60.290 50.000 4.90 0.00 45.16 2.34
1534 1571 1.977854 TGAAGCTGAAGCAGTCCCTTA 59.022 47.619 4.90 0.00 45.16 2.69
1536 1573 0.990374 ATGAAGCTGAAGCAGTCCCT 59.010 50.000 4.90 0.00 45.16 4.20
1553 1590 1.559368 TCCATTCCCAGCCAACAATG 58.441 50.000 0.00 0.00 0.00 2.82
1555 1592 2.178580 GATTCCATTCCCAGCCAACAA 58.821 47.619 0.00 0.00 0.00 2.83
1561 1598 0.179034 AGCTCGATTCCATTCCCAGC 60.179 55.000 0.00 0.00 0.00 4.85
1562 1599 3.475566 TTAGCTCGATTCCATTCCCAG 57.524 47.619 0.00 0.00 0.00 4.45
1566 1603 6.017934 TGCTACATTTTAGCTCGATTCCATTC 60.018 38.462 0.00 0.00 40.95 2.67
1588 1625 4.081406 TGCATTTCTACCAAATCACTGCT 58.919 39.130 0.00 0.00 0.00 4.24
1589 1626 4.439305 TGCATTTCTACCAAATCACTGC 57.561 40.909 0.00 0.00 0.00 4.40
1590 1627 5.771469 TGTTGCATTTCTACCAAATCACTG 58.229 37.500 0.00 0.00 0.00 3.66
1636 1676 3.073678 TGTGTCTGATGAAATGGAACCG 58.926 45.455 0.00 0.00 0.00 4.44
1663 1703 4.131596 GCTGAACCTACTGTGTTTTGGTA 58.868 43.478 0.00 0.00 0.00 3.25
1669 1709 0.105964 TGCGCTGAACCTACTGTGTT 59.894 50.000 9.73 0.00 0.00 3.32
1670 1710 0.105964 TTGCGCTGAACCTACTGTGT 59.894 50.000 9.73 0.00 0.00 3.72
1672 1712 1.512926 CTTTGCGCTGAACCTACTGT 58.487 50.000 9.73 0.00 0.00 3.55
1726 1773 4.158579 TGAGCTACACTGATTCGAACTCAT 59.841 41.667 0.00 0.00 0.00 2.90
1727 1774 3.506067 TGAGCTACACTGATTCGAACTCA 59.494 43.478 0.00 2.44 0.00 3.41
1728 1775 4.098055 TGAGCTACACTGATTCGAACTC 57.902 45.455 0.00 0.00 0.00 3.01
1729 1776 4.727507 ATGAGCTACACTGATTCGAACT 57.272 40.909 0.00 0.00 0.00 3.01
1730 1777 5.460419 CCTTATGAGCTACACTGATTCGAAC 59.540 44.000 0.00 0.00 0.00 3.95
1755 1802 2.791004 GCATGTCACTTGCACAAAGAAC 59.209 45.455 10.72 0.00 39.90 3.01
1796 1843 2.827921 GTCCAAACAGGGATCTGCATTT 59.172 45.455 0.00 0.00 44.59 2.32
1830 1877 3.206034 TGTTCATCAAGCTGATTTGCG 57.794 42.857 0.00 0.00 34.28 4.85
1925 1984 3.931468 TGTCATTGCACAAACAAACCTTG 59.069 39.130 0.00 0.00 32.27 3.61
1944 2003 1.975660 TTAGCCCCAAAGTGTGTGTC 58.024 50.000 0.00 0.00 0.00 3.67
1945 2004 2.445682 TTTAGCCCCAAAGTGTGTGT 57.554 45.000 0.00 0.00 0.00 3.72
1952 2011 7.877612 ACTACATTCAAAATTTTAGCCCCAAAG 59.122 33.333 2.44 0.00 0.00 2.77
1983 2042 5.045505 TGCATAACTGGGTATAGTCCAAACA 60.046 40.000 0.00 0.00 33.36 2.83
1984 2043 5.433526 TGCATAACTGGGTATAGTCCAAAC 58.566 41.667 0.00 0.00 33.36 2.93
1985 2044 5.702065 TGCATAACTGGGTATAGTCCAAA 57.298 39.130 0.00 0.00 33.36 3.28
1986 2045 5.702065 TTGCATAACTGGGTATAGTCCAA 57.298 39.130 0.00 0.00 33.36 3.53
1987 2046 5.702065 TTTGCATAACTGGGTATAGTCCA 57.298 39.130 0.00 0.00 0.00 4.02
1988 2047 6.296026 TGATTTGCATAACTGGGTATAGTCC 58.704 40.000 0.00 0.00 0.00 3.85
1989 2048 6.073003 GCTGATTTGCATAACTGGGTATAGTC 60.073 42.308 0.00 0.00 0.00 2.59
1990 2049 5.765182 GCTGATTTGCATAACTGGGTATAGT 59.235 40.000 0.00 0.00 0.00 2.12
1991 2050 6.000219 AGCTGATTTGCATAACTGGGTATAG 59.000 40.000 0.00 0.00 34.99 1.31
1992 2051 5.940617 AGCTGATTTGCATAACTGGGTATA 58.059 37.500 0.00 0.00 34.99 1.47
1993 2052 4.796606 AGCTGATTTGCATAACTGGGTAT 58.203 39.130 0.00 0.00 34.99 2.73
1994 2053 4.235079 AGCTGATTTGCATAACTGGGTA 57.765 40.909 0.00 0.00 34.99 3.69
1995 2054 3.091633 AGCTGATTTGCATAACTGGGT 57.908 42.857 0.00 0.00 34.99 4.51
1996 2055 3.444742 TCAAGCTGATTTGCATAACTGGG 59.555 43.478 0.00 0.00 34.99 4.45
1997 2056 4.707030 TCAAGCTGATTTGCATAACTGG 57.293 40.909 0.00 0.00 34.99 4.00
1998 2057 5.886992 TCATCAAGCTGATTTGCATAACTG 58.113 37.500 0.00 0.00 34.28 3.16
1999 2058 6.071784 TGTTCATCAAGCTGATTTGCATAACT 60.072 34.615 0.00 0.00 34.28 2.24
2000 2059 6.094719 TGTTCATCAAGCTGATTTGCATAAC 58.905 36.000 0.00 0.00 34.28 1.89
2001 2060 6.270156 TGTTCATCAAGCTGATTTGCATAA 57.730 33.333 0.00 0.00 34.28 1.90
2002 2061 5.900865 TGTTCATCAAGCTGATTTGCATA 57.099 34.783 0.00 0.00 34.28 3.14
2003 2062 4.794278 TGTTCATCAAGCTGATTTGCAT 57.206 36.364 0.00 0.00 34.28 3.96
2004 2063 4.587584 TTGTTCATCAAGCTGATTTGCA 57.412 36.364 0.00 0.00 34.28 4.08
2005 2064 6.476243 AAATTGTTCATCAAGCTGATTTGC 57.524 33.333 0.00 0.00 39.55 3.68
2006 2065 8.306680 AGAAAATTGTTCATCAAGCTGATTTG 57.693 30.769 0.00 0.00 39.55 2.32
2019 2078 9.967451 TGTTCCCTACATATAGAAAATTGTTCA 57.033 29.630 0.00 0.00 0.00 3.18
2027 2086 9.967451 TGTTTCAATGTTCCCTACATATAGAAA 57.033 29.630 0.00 0.00 46.75 2.52
2032 2091 9.693739 TGTTATGTTTCAATGTTCCCTACATAT 57.306 29.630 0.00 0.00 46.75 1.78
2033 2092 9.693739 ATGTTATGTTTCAATGTTCCCTACATA 57.306 29.630 0.00 0.00 46.75 2.29
2035 2094 8.415950 AATGTTATGTTTCAATGTTCCCTACA 57.584 30.769 0.00 0.00 41.97 2.74
2036 2095 8.739972 AGAATGTTATGTTTCAATGTTCCCTAC 58.260 33.333 0.00 0.00 0.00 3.18
2037 2096 8.877864 AGAATGTTATGTTTCAATGTTCCCTA 57.122 30.769 0.00 0.00 0.00 3.53
2038 2097 7.781324 AGAATGTTATGTTTCAATGTTCCCT 57.219 32.000 0.00 0.00 0.00 4.20
2039 2098 8.087750 TCAAGAATGTTATGTTTCAATGTTCCC 58.912 33.333 0.00 0.00 0.00 3.97
2040 2099 9.474920 TTCAAGAATGTTATGTTTCAATGTTCC 57.525 29.630 0.00 0.00 0.00 3.62
2046 2105 9.958234 TTCGAATTCAAGAATGTTATGTTTCAA 57.042 25.926 6.22 0.00 0.00 2.69
2050 2109 9.778993 CTGATTCGAATTCAAGAATGTTATGTT 57.221 29.630 12.81 0.00 37.23 2.71
2051 2110 8.950210 ACTGATTCGAATTCAAGAATGTTATGT 58.050 29.630 12.81 0.43 37.23 2.29
2052 2111 9.218359 CACTGATTCGAATTCAAGAATGTTATG 57.782 33.333 12.81 0.62 37.23 1.90
2053 2112 8.950210 ACACTGATTCGAATTCAAGAATGTTAT 58.050 29.630 12.81 0.00 37.23 1.89
2054 2113 8.322906 ACACTGATTCGAATTCAAGAATGTTA 57.677 30.769 12.81 1.12 37.23 2.41
2055 2114 7.206981 ACACTGATTCGAATTCAAGAATGTT 57.793 32.000 12.81 0.00 37.23 2.71
2056 2115 6.808008 ACACTGATTCGAATTCAAGAATGT 57.192 33.333 12.81 8.87 37.23 2.71
2057 2116 7.968246 ACTACACTGATTCGAATTCAAGAATG 58.032 34.615 12.81 8.33 37.23 2.67
2058 2117 8.553459 AACTACACTGATTCGAATTCAAGAAT 57.447 30.769 12.81 7.22 39.52 2.40
2059 2118 7.962964 AACTACACTGATTCGAATTCAAGAA 57.037 32.000 12.81 2.31 0.00 2.52
2060 2119 7.655732 TGAAACTACACTGATTCGAATTCAAGA 59.344 33.333 12.81 0.00 0.00 3.02
2061 2120 7.796838 TGAAACTACACTGATTCGAATTCAAG 58.203 34.615 12.81 12.53 0.00 3.02
2062 2121 7.571244 GCTGAAACTACACTGATTCGAATTCAA 60.571 37.037 12.81 0.68 0.00 2.69
2063 2122 6.128553 GCTGAAACTACACTGATTCGAATTCA 60.129 38.462 12.81 10.52 0.00 2.57
2064 2123 6.091441 AGCTGAAACTACACTGATTCGAATTC 59.909 38.462 12.81 6.39 0.00 2.17
2065 2124 5.934625 AGCTGAAACTACACTGATTCGAATT 59.065 36.000 12.81 0.00 0.00 2.17
2066 2125 5.482908 AGCTGAAACTACACTGATTCGAAT 58.517 37.500 11.20 11.20 0.00 3.34
2067 2126 4.883083 AGCTGAAACTACACTGATTCGAA 58.117 39.130 0.00 0.00 0.00 3.71
2068 2127 4.521130 AGCTGAAACTACACTGATTCGA 57.479 40.909 0.00 0.00 0.00 3.71
2069 2128 4.449068 ACAAGCTGAAACTACACTGATTCG 59.551 41.667 0.00 0.00 0.00 3.34
2070 2129 5.931441 ACAAGCTGAAACTACACTGATTC 57.069 39.130 0.00 0.00 0.00 2.52
2071 2130 5.409826 GCTACAAGCTGAAACTACACTGATT 59.590 40.000 0.00 0.00 38.45 2.57
2072 2131 4.932200 GCTACAAGCTGAAACTACACTGAT 59.068 41.667 0.00 0.00 38.45 2.90
2073 2132 4.307432 GCTACAAGCTGAAACTACACTGA 58.693 43.478 0.00 0.00 38.45 3.41
2074 2133 4.653806 GCTACAAGCTGAAACTACACTG 57.346 45.455 0.00 0.00 38.45 3.66
2087 2146 5.629079 AACAAACCTTATGAGCTACAAGC 57.371 39.130 0.00 0.00 42.84 4.01
2088 2147 6.857964 CACAAACAAACCTTATGAGCTACAAG 59.142 38.462 0.00 0.00 0.00 3.16
2089 2148 6.734137 CACAAACAAACCTTATGAGCTACAA 58.266 36.000 0.00 0.00 0.00 2.41
2090 2149 5.278266 GCACAAACAAACCTTATGAGCTACA 60.278 40.000 0.00 0.00 0.00 2.74
2091 2150 5.154222 GCACAAACAAACCTTATGAGCTAC 58.846 41.667 0.00 0.00 0.00 3.58
2092 2151 4.824537 TGCACAAACAAACCTTATGAGCTA 59.175 37.500 0.00 0.00 0.00 3.32
2093 2152 3.636300 TGCACAAACAAACCTTATGAGCT 59.364 39.130 0.00 0.00 0.00 4.09
2094 2153 3.976169 TGCACAAACAAACCTTATGAGC 58.024 40.909 0.00 0.00 0.00 4.26
2095 2154 7.651304 TGTTATTGCACAAACAAACCTTATGAG 59.349 33.333 9.94 0.00 32.86 2.90
2096 2155 7.436673 GTGTTATTGCACAAACAAACCTTATGA 59.563 33.333 13.18 0.00 37.35 2.15
2097 2156 7.223582 TGTGTTATTGCACAAACAAACCTTATG 59.776 33.333 13.18 0.00 45.17 1.90
2098 2157 7.268586 TGTGTTATTGCACAAACAAACCTTAT 58.731 30.769 13.18 0.00 45.17 1.73
2099 2158 6.631016 TGTGTTATTGCACAAACAAACCTTA 58.369 32.000 13.18 0.00 45.17 2.69
2100 2159 5.482908 TGTGTTATTGCACAAACAAACCTT 58.517 33.333 13.18 0.00 45.17 3.50
2101 2160 5.078411 TGTGTTATTGCACAAACAAACCT 57.922 34.783 13.18 0.00 45.17 3.50
2110 2169 3.181482 CCCAAAGTGTGTGTTATTGCACA 60.181 43.478 0.00 0.00 45.85 4.57
2111 2170 3.380142 CCCAAAGTGTGTGTTATTGCAC 58.620 45.455 0.00 0.00 39.65 4.57
2112 2171 2.363680 CCCCAAAGTGTGTGTTATTGCA 59.636 45.455 0.00 0.00 0.00 4.08
2113 2172 2.866065 GCCCCAAAGTGTGTGTTATTGC 60.866 50.000 0.00 0.00 0.00 3.56
2114 2173 2.627699 AGCCCCAAAGTGTGTGTTATTG 59.372 45.455 0.00 0.00 0.00 1.90
2115 2174 2.957474 AGCCCCAAAGTGTGTGTTATT 58.043 42.857 0.00 0.00 0.00 1.40
2116 2175 2.675658 AGCCCCAAAGTGTGTGTTAT 57.324 45.000 0.00 0.00 0.00 1.89
2117 2176 3.579534 TTAGCCCCAAAGTGTGTGTTA 57.420 42.857 0.00 0.00 0.00 2.41
2118 2177 2.445682 TTAGCCCCAAAGTGTGTGTT 57.554 45.000 0.00 0.00 0.00 3.32
2119 2178 2.445682 TTTAGCCCCAAAGTGTGTGT 57.554 45.000 0.00 0.00 0.00 3.72
2120 2179 4.335400 AATTTTAGCCCCAAAGTGTGTG 57.665 40.909 0.00 0.00 0.00 3.82
2121 2180 5.104735 TCAAAATTTTAGCCCCAAAGTGTGT 60.105 36.000 2.44 0.00 0.00 3.72
2122 2181 5.363939 TCAAAATTTTAGCCCCAAAGTGTG 58.636 37.500 2.44 0.00 0.00 3.82
2123 2182 5.622346 TCAAAATTTTAGCCCCAAAGTGT 57.378 34.783 2.44 0.00 0.00 3.55
2124 2183 6.486320 ACATTCAAAATTTTAGCCCCAAAGTG 59.514 34.615 2.44 0.00 0.00 3.16
2125 2184 6.600388 ACATTCAAAATTTTAGCCCCAAAGT 58.400 32.000 2.44 0.00 0.00 2.66
2126 2185 7.877612 ACTACATTCAAAATTTTAGCCCCAAAG 59.122 33.333 2.44 0.00 0.00 2.77
2127 2186 7.659390 CACTACATTCAAAATTTTAGCCCCAAA 59.341 33.333 2.44 0.00 0.00 3.28
2128 2187 7.158021 CACTACATTCAAAATTTTAGCCCCAA 58.842 34.615 2.44 0.00 0.00 4.12
2129 2188 6.696411 CACTACATTCAAAATTTTAGCCCCA 58.304 36.000 2.44 0.00 0.00 4.96
2130 2189 5.580691 GCACTACATTCAAAATTTTAGCCCC 59.419 40.000 2.44 0.00 0.00 5.80
2131 2190 5.580691 GGCACTACATTCAAAATTTTAGCCC 59.419 40.000 2.44 0.00 0.00 5.19
2132 2191 5.580691 GGGCACTACATTCAAAATTTTAGCC 59.419 40.000 2.44 6.16 35.29 3.93
2133 2192 6.311200 CAGGGCACTACATTCAAAATTTTAGC 59.689 38.462 2.44 0.00 0.00 3.09
2134 2193 7.378181 ACAGGGCACTACATTCAAAATTTTAG 58.622 34.615 2.44 0.00 0.00 1.85
2135 2194 7.296628 ACAGGGCACTACATTCAAAATTTTA 57.703 32.000 2.44 0.00 0.00 1.52
2136 2195 6.173427 ACAGGGCACTACATTCAAAATTTT 57.827 33.333 0.00 0.00 0.00 1.82
2137 2196 5.806654 ACAGGGCACTACATTCAAAATTT 57.193 34.783 0.00 0.00 0.00 1.82
2138 2197 5.806654 AACAGGGCACTACATTCAAAATT 57.193 34.783 0.00 0.00 0.00 1.82
2139 2198 5.511202 CCAAACAGGGCACTACATTCAAAAT 60.511 40.000 0.00 0.00 0.00 1.82
2140 2199 4.202202 CCAAACAGGGCACTACATTCAAAA 60.202 41.667 0.00 0.00 0.00 2.44
2141 2200 3.320541 CCAAACAGGGCACTACATTCAAA 59.679 43.478 0.00 0.00 0.00 2.69
2142 2201 2.890311 CCAAACAGGGCACTACATTCAA 59.110 45.455 0.00 0.00 0.00 2.69
2143 2202 2.107378 TCCAAACAGGGCACTACATTCA 59.893 45.455 0.00 0.00 38.24 2.57
2144 2203 2.488153 GTCCAAACAGGGCACTACATTC 59.512 50.000 0.00 0.00 43.39 2.67
2145 2204 2.514803 GTCCAAACAGGGCACTACATT 58.485 47.619 0.00 0.00 43.39 2.71
2146 2205 2.200373 GTCCAAACAGGGCACTACAT 57.800 50.000 0.00 0.00 43.39 2.29
2147 2206 3.717842 GTCCAAACAGGGCACTACA 57.282 52.632 0.00 0.00 43.39 2.74
2255 2319 5.066913 TGCAGTATATCCAGAAGAGAGGA 57.933 43.478 0.00 0.00 38.50 3.71
2320 2384 2.909006 AGAGAGATTGGAGTCAAGGCAA 59.091 45.455 0.00 0.00 36.19 4.52
2394 2458 5.781210 TTCTAGCATCTCGACATTCATCT 57.219 39.130 0.00 0.00 0.00 2.90
2434 2498 2.290896 TGCCTGGAAAATCTTCACGGAT 60.291 45.455 0.00 0.00 32.75 4.18
2463 2527 4.081642 GCTTAGTGACCACAGGACTATCAA 60.082 45.833 2.78 0.00 0.00 2.57
2470 2534 1.292223 GCGCTTAGTGACCACAGGA 59.708 57.895 0.00 0.00 0.00 3.86
2521 2585 1.219646 CAGGCACCAAATGTTTGTGC 58.780 50.000 17.12 17.12 40.80 4.57
2527 2591 0.105760 TTCCACCAGGCACCAAATGT 60.106 50.000 0.00 0.00 33.74 2.71
2560 2624 1.056700 AGGTCACACCAGAGCCACTT 61.057 55.000 0.00 0.00 41.95 3.16
2574 2638 3.199946 CCTTGGCTCCATAAAGTAGGTCA 59.800 47.826 0.00 0.00 0.00 4.02
2602 2666 2.984562 TCAGTGTTGTTCAGCTTGACA 58.015 42.857 0.00 0.00 0.00 3.58
2635 2699 1.852309 TCCTCAGCTCTCTCATCTCCT 59.148 52.381 0.00 0.00 0.00 3.69
2638 2702 3.025978 CAACTCCTCAGCTCTCTCATCT 58.974 50.000 0.00 0.00 0.00 2.90
2662 2726 6.412214 TCTTGAAGTTAGTAAGCCCAATACC 58.588 40.000 0.00 0.00 0.00 2.73
2703 2767 3.293337 CCCATCAAATGCCTGATCTTCA 58.707 45.455 0.00 0.00 33.66 3.02
2755 2819 3.584406 TCCATAGGGCATATGAACCTCTG 59.416 47.826 19.92 18.45 43.54 3.35
2818 2882 1.553248 CCACTTGGGTCCGATTCACTA 59.447 52.381 0.00 0.00 0.00 2.74
2837 2901 7.023575 CCTTCAATAAATACTGAATATGCGCC 58.976 38.462 4.18 0.00 31.40 6.53
2868 2932 3.565307 TGTTCAAGGAGCAAAGGATGTT 58.435 40.909 0.00 0.00 0.00 2.71
2915 2979 2.564771 CACTTCAGTTGCTTCAGTGGA 58.435 47.619 0.00 0.00 32.74 4.02
3007 3074 7.309177 CGGAGATCACAACTATCCTAGTATTG 58.691 42.308 0.00 0.00 38.26 1.90
3008 3075 6.434652 CCGGAGATCACAACTATCCTAGTATT 59.565 42.308 0.00 0.00 38.26 1.89
3077 3144 3.376546 GCTTTTGACATAAGAGAGGCCAG 59.623 47.826 5.01 0.00 0.00 4.85
3344 3411 5.975939 GCCAATCTCATCAATAAGAACAAGC 59.024 40.000 0.00 0.00 0.00 4.01
3435 3502 2.366533 TGTCACAACGGCCAAGTTTAA 58.633 42.857 2.24 0.00 30.96 1.52
3446 3513 2.487762 AGCATAATGGGTTGTCACAACG 59.512 45.455 14.55 0.02 0.00 4.10
3449 3516 3.431673 TCAGCATAATGGGTTGTCACA 57.568 42.857 0.00 0.00 0.00 3.58
3485 3552 3.873361 TCTCAAATCGATCATCAACAGCC 59.127 43.478 0.00 0.00 0.00 4.85
3531 3598 6.710744 ACTCGATATGTTGGTTTCAGAGTTTT 59.289 34.615 0.00 0.00 33.27 2.43
4154 4223 6.239008 CCACATACACTTTGTCTCCAATTTGT 60.239 38.462 0.00 0.00 33.12 2.83
4193 4262 0.394352 CAACAGTGGCCATACTCCCC 60.394 60.000 9.72 0.00 0.00 4.81
4413 4482 5.920193 ATATGTTTACCATGTTGCAAGCT 57.080 34.783 0.00 0.00 34.86 3.74
4416 4485 5.416013 TCCGAATATGTTTACCATGTTGCAA 59.584 36.000 0.00 0.00 35.29 4.08
4426 4495 6.371809 TTCCAGCATTCCGAATATGTTTAC 57.628 37.500 0.00 0.00 0.00 2.01
4432 4509 3.632145 GTGGTTTCCAGCATTCCGAATAT 59.368 43.478 0.00 0.00 32.34 1.28
4434 4511 1.818674 GTGGTTTCCAGCATTCCGAAT 59.181 47.619 0.00 0.00 32.34 3.34
4437 4514 1.247567 AAGTGGTTTCCAGCATTCCG 58.752 50.000 0.00 0.00 32.34 4.30
4439 4516 6.124088 CACTATAAGTGGTTTCCAGCATTC 57.876 41.667 0.00 0.00 42.35 2.67
4453 4530 8.848474 ACAATGTCAAAAGCTACACTATAAGT 57.152 30.769 0.00 0.00 0.00 2.24
4454 4531 9.760660 GAACAATGTCAAAAGCTACACTATAAG 57.239 33.333 0.00 0.00 0.00 1.73
4455 4532 9.278978 TGAACAATGTCAAAAGCTACACTATAA 57.721 29.630 0.00 0.00 0.00 0.98
4456 4533 8.840833 TGAACAATGTCAAAAGCTACACTATA 57.159 30.769 0.00 0.00 0.00 1.31
4457 4534 7.744087 TGAACAATGTCAAAAGCTACACTAT 57.256 32.000 0.00 0.00 0.00 2.12
4484 4561 9.650371 CCACAGTTATGTTGACGAAATATATTG 57.350 33.333 0.00 0.00 37.65 1.90
4485 4562 9.391006 ACCACAGTTATGTTGACGAAATATATT 57.609 29.630 0.00 0.00 37.65 1.28
4512 4589 1.668826 AGAGACACCATTGGCCCTTA 58.331 50.000 0.00 0.00 0.00 2.69
4517 4594 2.997485 GTCAAAGAGACACCATTGGC 57.003 50.000 1.54 0.00 46.77 4.52
4529 4606 1.300620 CGGACACGGCAGTCAAAGA 60.301 57.895 8.99 0.00 40.29 2.52
4564 4720 9.727627 GTGAGAACCTCATCAAAATATCATTTC 57.272 33.333 0.00 0.00 42.73 2.17
4578 4734 2.194859 AGATGCCAGTGAGAACCTCAT 58.805 47.619 0.00 0.00 42.73 2.90
4620 4779 2.766828 ACCCAACTCAGCCTACAGATAC 59.233 50.000 0.00 0.00 0.00 2.24
4633 4792 2.701107 GAGACCTGCTTTACCCAACTC 58.299 52.381 0.00 0.00 0.00 3.01
4669 4828 2.165167 CAACAGCACATGATGGGACTT 58.835 47.619 0.00 0.00 35.42 3.01
4718 4877 4.311816 TCTGAAACGGTTAGAACGAACT 57.688 40.909 0.00 0.00 34.93 3.01
4808 4968 7.388776 TCGATGGAAAGGAAAGATATATGCAAG 59.611 37.037 0.00 0.00 0.00 4.01
4820 4980 2.107552 ACCCAACTCGATGGAAAGGAAA 59.892 45.455 6.63 0.00 43.54 3.13
5098 5259 3.420606 CTCCACACTGCTGCGCTG 61.421 66.667 9.73 10.04 0.00 5.18
5101 5262 2.962827 CTTGCTCCACACTGCTGCG 61.963 63.158 0.00 0.00 0.00 5.18
5102 5263 2.952245 CTTGCTCCACACTGCTGC 59.048 61.111 0.00 0.00 0.00 5.25
5103 5264 0.321034 TAGCTTGCTCCACACTGCTG 60.321 55.000 0.00 0.00 38.38 4.41
5104 5265 0.036577 CTAGCTTGCTCCACACTGCT 60.037 55.000 0.00 0.00 40.27 4.24
5244 5407 7.302350 TCAACGTGATAATAGACAATGTTGG 57.698 36.000 0.00 0.00 36.37 3.77
5262 5425 3.306019 GGGCAGGATTGAAAAATCAACGT 60.306 43.478 1.28 0.00 31.89 3.99
5263 5426 3.056607 AGGGCAGGATTGAAAAATCAACG 60.057 43.478 1.28 0.00 31.89 4.10
5264 5427 4.248058 CAGGGCAGGATTGAAAAATCAAC 58.752 43.478 1.28 0.00 31.89 3.18
5268 5440 5.484998 ACATTACAGGGCAGGATTGAAAAAT 59.515 36.000 0.00 0.00 0.00 1.82
5271 5443 4.046286 ACATTACAGGGCAGGATTGAAA 57.954 40.909 0.00 0.00 0.00 2.69
5279 5451 1.561542 AGGGAGAACATTACAGGGCAG 59.438 52.381 0.00 0.00 0.00 4.85
5287 5459 8.225416 TCTAGCTTATACTGAGGGAGAACATTA 58.775 37.037 0.00 0.00 0.00 1.90
5288 5460 7.014808 GTCTAGCTTATACTGAGGGAGAACATT 59.985 40.741 0.00 0.00 0.00 2.71
5316 5488 3.498774 ACAGGGCCTGCTGAATAATAG 57.501 47.619 33.04 5.44 34.37 1.73
5334 5506 9.891828 CAAACATTAACTTAGCAGAACATTACA 57.108 29.630 0.00 0.00 0.00 2.41
5347 5550 9.173021 CCACCATAGATGTCAAACATTAACTTA 57.827 33.333 0.00 0.00 39.27 2.24
5353 5556 4.343231 TGCCACCATAGATGTCAAACATT 58.657 39.130 0.00 0.00 39.27 2.71
5360 5563 2.035066 GCCAAATGCCACCATAGATGTC 59.965 50.000 0.00 0.00 0.00 3.06
5363 5566 2.313317 CTGCCAAATGCCACCATAGAT 58.687 47.619 0.00 0.00 40.16 1.98
5368 5571 2.604079 CCCTGCCAAATGCCACCA 60.604 61.111 0.00 0.00 40.16 4.17
5373 5576 3.056313 GCTCGTCCCTGCCAAATGC 62.056 63.158 0.00 0.00 41.77 3.56
5374 5577 2.753966 CGCTCGTCCCTGCCAAATG 61.754 63.158 0.00 0.00 0.00 2.32
5413 5622 2.510238 CTGCCAGTAGCCGCAGTC 60.510 66.667 0.91 0.00 45.97 3.51
5416 5625 3.625897 ACACTGCCAGTAGCCGCA 61.626 61.111 0.00 0.00 42.71 5.69
5420 5629 0.035458 AAGGACACACTGCCAGTAGC 59.965 55.000 0.00 0.00 44.14 3.58
5421 5630 2.146342 CAAAGGACACACTGCCAGTAG 58.854 52.381 0.00 0.00 0.00 2.57
5422 5631 1.813862 GCAAAGGACACACTGCCAGTA 60.814 52.381 0.00 0.00 0.00 2.74
5425 5634 3.840437 GCAAAGGACACACTGCCA 58.160 55.556 0.00 0.00 0.00 4.92
5431 5640 4.966787 GCCGGGGCAAAGGACACA 62.967 66.667 2.18 0.00 41.49 3.72
5497 5706 3.444805 AGCTCGTGAGACGCCTCC 61.445 66.667 0.00 0.00 42.21 4.30
5524 5733 2.583593 GGCCTGCACTCGTCGATC 60.584 66.667 0.00 0.00 0.00 3.69
5532 5741 1.915078 GACCTGGTATGGCCTGCACT 61.915 60.000 3.32 0.00 38.35 4.40
5542 5751 2.572104 GACCACAAAGAGGACCTGGTAT 59.428 50.000 0.00 0.00 35.29 2.73
5554 5763 1.580942 CATGCCGTGGACCACAAAG 59.419 57.895 24.18 12.92 33.40 2.77
5665 5874 2.125673 ATGTAGGCGACGGTGCAC 60.126 61.111 8.80 8.80 36.28 4.57
5714 5923 0.106167 TCCCTGCTGTAGGTAGCGAT 60.106 55.000 10.99 0.00 46.61 4.58
5715 5924 1.035932 GTCCCTGCTGTAGGTAGCGA 61.036 60.000 10.99 0.00 46.61 4.93
5736 5965 1.133216 TGTGATGTAGAGCTGACGAGC 59.867 52.381 0.00 0.00 46.64 5.03
5737 5966 2.680339 TCTGTGATGTAGAGCTGACGAG 59.320 50.000 0.00 0.00 0.00 4.18
5738 5967 2.711542 TCTGTGATGTAGAGCTGACGA 58.288 47.619 0.00 0.00 0.00 4.20
5741 5970 4.019174 TGTGATCTGTGATGTAGAGCTGA 58.981 43.478 0.00 0.00 32.09 4.26
5747 5976 4.990426 TGTTGTGTGTGATCTGTGATGTAG 59.010 41.667 0.00 0.00 0.00 2.74
5764 5995 1.143305 CGCAGGAGAACTCTGTTGTG 58.857 55.000 1.86 2.43 34.89 3.33
5798 6040 2.816672 TGTGTGTGTGTGTGTGTGATTT 59.183 40.909 0.00 0.00 0.00 2.17
5799 6041 2.161410 GTGTGTGTGTGTGTGTGTGATT 59.839 45.455 0.00 0.00 0.00 2.57
5801 6043 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
5802 6044 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5822 6064 5.353394 TGAAGTTCCAACTCTACTGTGTT 57.647 39.130 0.00 0.00 38.57 3.32
5828 6070 7.820044 CTTCTGTATGAAGTTCCAACTCTAC 57.180 40.000 0.00 0.00 45.26 2.59
5864 6114 2.242043 CCAGGGAAACTCTGTTGCATT 58.758 47.619 0.00 0.00 0.00 3.56
5866 6116 0.823356 GCCAGGGAAACTCTGTTGCA 60.823 55.000 0.00 0.00 0.00 4.08
5880 6130 1.272425 TGGATTGTAAACAGGGCCAGG 60.272 52.381 6.18 0.00 0.00 4.45
5882 6132 2.622977 GGATGGATTGTAAACAGGGCCA 60.623 50.000 6.18 0.00 0.00 5.36
5883 6133 2.031870 GGATGGATTGTAAACAGGGCC 58.968 52.381 0.00 0.00 0.00 5.80
5884 6134 2.427095 GTGGATGGATTGTAAACAGGGC 59.573 50.000 0.00 0.00 0.00 5.19
5885 6135 2.682856 CGTGGATGGATTGTAAACAGGG 59.317 50.000 0.00 0.00 0.00 4.45
5887 6137 3.623060 CCTCGTGGATGGATTGTAAACAG 59.377 47.826 0.00 0.00 34.57 3.16
5889 6139 3.374058 CACCTCGTGGATGGATTGTAAAC 59.626 47.826 11.17 0.00 37.04 2.01
5891 6141 3.260475 CACCTCGTGGATGGATTGTAA 57.740 47.619 11.17 0.00 37.04 2.41
5893 6143 3.861341 CACCTCGTGGATGGATTGT 57.139 52.632 11.17 0.00 37.04 2.71
5907 6185 2.460669 GGCTCAATTCCATTTCCACCT 58.539 47.619 0.00 0.00 0.00 4.00
5913 6191 0.324645 AGGCCGGCTCAATTCCATTT 60.325 50.000 28.56 0.00 0.00 2.32
5914 6192 1.039233 CAGGCCGGCTCAATTCCATT 61.039 55.000 28.56 0.00 0.00 3.16
5915 6193 1.454479 CAGGCCGGCTCAATTCCAT 60.454 57.895 28.56 0.00 0.00 3.41
5946 6225 1.900486 CCGTGTCCCTCTAACCTCTTT 59.100 52.381 0.00 0.00 0.00 2.52
5955 6237 3.314331 CACAGCCCGTGTCCCTCT 61.314 66.667 0.00 0.00 41.03 3.69
5988 6270 4.167892 AGTGCCCATTACATTAATCCCTGA 59.832 41.667 0.00 0.00 0.00 3.86
6040 6323 1.006337 GCAAACTTGAATGGCGCCA 60.006 52.632 34.80 34.80 0.00 5.69
6061 6344 5.702622 TCTAGTTCGATTTTGATTCTGCG 57.297 39.130 0.00 0.00 0.00 5.18
6062 6345 5.906285 GCATCTAGTTCGATTTTGATTCTGC 59.094 40.000 0.00 0.00 0.00 4.26
6109 6392 1.374343 CCAGAGAAGCGCATGTGCAT 61.374 55.000 31.29 21.51 42.21 3.96
6148 6436 2.345341 GGCATACAAAAAGAATGCGTGC 59.655 45.455 0.00 0.00 45.50 5.34
6153 6441 4.396166 AGACCTCGGCATACAAAAAGAATG 59.604 41.667 0.00 0.00 0.00 2.67
6188 6476 4.538891 AGCCCCTGGTATAGTAAACAAACT 59.461 41.667 0.00 0.00 0.00 2.66
6193 6481 5.820404 ACATAGCCCCTGGTATAGTAAAC 57.180 43.478 0.00 0.00 33.51 2.01
6194 6482 6.387513 TGAAACATAGCCCCTGGTATAGTAAA 59.612 38.462 0.00 0.00 33.51 2.01
6195 6483 5.906495 TGAAACATAGCCCCTGGTATAGTAA 59.094 40.000 0.00 0.00 33.51 2.24
6201 6489 2.504175 GAGTGAAACATAGCCCCTGGTA 59.496 50.000 0.00 0.00 41.43 3.25
6226 6525 2.045634 TGCAGCCCTCACATGAGC 60.046 61.111 0.00 0.00 40.75 4.26
6227 6526 1.002990 TGTGCAGCCCTCACATGAG 60.003 57.895 0.00 1.63 39.29 2.90
6228 6527 1.002990 CTGTGCAGCCCTCACATGA 60.003 57.895 0.00 0.00 42.74 3.07
6238 6548 0.595095 CCTCTTTGTTCCTGTGCAGC 59.405 55.000 0.00 0.00 0.00 5.25
6262 6575 2.483013 CCGTTGACCTTGAGTGAGTGAA 60.483 50.000 0.00 0.00 0.00 3.18
6269 6582 2.397413 CTGGGCCGTTGACCTTGAGT 62.397 60.000 0.00 0.00 0.00 3.41
6272 6585 3.365265 GCTGGGCCGTTGACCTTG 61.365 66.667 0.00 0.00 0.00 3.61
6287 6600 1.076332 GAATCAACTGGTTACGCGCT 58.924 50.000 5.73 0.00 0.00 5.92
6292 6605 8.662781 TTAGCATCATAGAATCAACTGGTTAC 57.337 34.615 0.00 0.00 0.00 2.50
6303 6616 5.242615 TGTCTCTCGCTTAGCATCATAGAAT 59.757 40.000 4.70 0.00 0.00 2.40
6320 6637 5.163774 GGAGCATCATTTTCAAGTGTCTCTC 60.164 44.000 0.00 0.00 36.25 3.20
6326 6643 3.495193 CGTGGAGCATCATTTTCAAGTG 58.505 45.455 0.00 0.00 36.25 3.16
6365 6699 9.689976 CATTGGATGTGTATTGTAGTTGAAAAA 57.310 29.630 0.00 0.00 0.00 1.94
6368 6702 7.663493 TGACATTGGATGTGTATTGTAGTTGAA 59.337 33.333 0.00 0.00 45.03 2.69
6373 6707 8.442632 AATCTGACATTGGATGTGTATTGTAG 57.557 34.615 0.00 0.00 45.03 2.74
6381 6715 8.048534 ACTCTAAAAATCTGACATTGGATGTG 57.951 34.615 0.00 0.00 45.03 3.21
6397 6731 6.153756 GGCGCCAGATTTTTAACTCTAAAAA 58.846 36.000 24.80 5.52 46.09 1.94
6434 6768 5.474532 ACAAATGTCAGCAAGTATGTCATGT 59.525 36.000 0.00 0.00 0.00 3.21
6439 6773 7.042797 AGAAAACAAATGTCAGCAAGTATGT 57.957 32.000 0.00 0.00 0.00 2.29
6466 6800 7.687383 TCTGTACAGAGGGAGTAGTCTAATA 57.313 40.000 21.74 0.00 32.82 0.98
6468 6802 6.384342 TTCTGTACAGAGGGAGTAGTCTAA 57.616 41.667 23.97 3.46 38.88 2.10
6469 6803 6.384342 TTTCTGTACAGAGGGAGTAGTCTA 57.616 41.667 23.97 3.66 38.88 2.59
6471 6805 7.826918 ATATTTCTGTACAGAGGGAGTAGTC 57.173 40.000 23.97 0.00 38.88 2.59
6472 6806 9.357161 CTTATATTTCTGTACAGAGGGAGTAGT 57.643 37.037 23.97 9.08 38.88 2.73
6473 6807 9.575868 TCTTATATTTCTGTACAGAGGGAGTAG 57.424 37.037 23.97 17.75 38.88 2.57
6474 6808 9.575868 CTCTTATATTTCTGTACAGAGGGAGTA 57.424 37.037 23.97 12.17 38.88 2.59
6475 6809 8.062536 ACTCTTATATTTCTGTACAGAGGGAGT 58.937 37.037 23.97 22.28 38.88 3.85
6476 6810 8.356657 CACTCTTATATTTCTGTACAGAGGGAG 58.643 40.741 23.97 21.80 38.88 4.30
6477 6811 7.839705 ACACTCTTATATTTCTGTACAGAGGGA 59.160 37.037 23.97 15.11 38.88 4.20
6508 6842 9.253832 TCTCTCTCTCTCAATCTCTAAACAAAT 57.746 33.333 0.00 0.00 0.00 2.32
6509 6843 8.642935 TCTCTCTCTCTCAATCTCTAAACAAA 57.357 34.615 0.00 0.00 0.00 2.83
6510 6844 8.106462 TCTCTCTCTCTCTCAATCTCTAAACAA 58.894 37.037 0.00 0.00 0.00 2.83
6512 6846 7.770897 ACTCTCTCTCTCTCTCAATCTCTAAAC 59.229 40.741 0.00 0.00 0.00 2.01
6515 6849 8.547481 TTACTCTCTCTCTCTCTCAATCTCTA 57.453 38.462 0.00 0.00 0.00 2.43
6516 6850 5.965033 ACTCTCTCTCTCTCTCAATCTCT 57.035 43.478 0.00 0.00 0.00 3.10
6518 6852 6.538742 CGTTTACTCTCTCTCTCTCTCAATCT 59.461 42.308 0.00 0.00 0.00 2.40
6519 6853 6.238374 CCGTTTACTCTCTCTCTCTCTCAATC 60.238 46.154 0.00 0.00 0.00 2.67
6520 6854 5.588648 CCGTTTACTCTCTCTCTCTCTCAAT 59.411 44.000 0.00 0.00 0.00 2.57
6523 6857 3.311596 GCCGTTTACTCTCTCTCTCTCTC 59.688 52.174 0.00 0.00 0.00 3.20
6524 6858 3.275999 GCCGTTTACTCTCTCTCTCTCT 58.724 50.000 0.00 0.00 0.00 3.10
6525 6859 3.011119 TGCCGTTTACTCTCTCTCTCTC 58.989 50.000 0.00 0.00 0.00 3.20
6527 6861 2.750712 ACTGCCGTTTACTCTCTCTCTC 59.249 50.000 0.00 0.00 0.00 3.20
6532 6866 2.364324 TGAACACTGCCGTTTACTCTCT 59.636 45.455 0.00 0.00 0.00 3.10
6536 6870 2.614829 AGTGAACACTGCCGTTTACT 57.385 45.000 6.67 3.33 39.94 2.24
6539 6873 3.537580 TCTAAAGTGAACACTGCCGTTT 58.462 40.909 8.25 1.79 41.58 3.60
6540 6874 3.188159 TCTAAAGTGAACACTGCCGTT 57.812 42.857 8.25 2.13 41.58 4.44
6541 6875 2.870411 GTTCTAAAGTGAACACTGCCGT 59.130 45.455 8.25 0.00 44.00 5.68
6552 6888 9.690434 GCTTAAGATTTATCGTGTTCTAAAGTG 57.310 33.333 6.67 0.00 0.00 3.16
6564 6900 8.498358 TGTTATGATGCTGCTTAAGATTTATCG 58.502 33.333 6.67 0.00 0.00 2.92
6594 6933 2.080693 TCGCCACGCAGAAACAAATAT 58.919 42.857 0.00 0.00 0.00 1.28
6598 6937 0.602638 AGATCGCCACGCAGAAACAA 60.603 50.000 0.00 0.00 0.00 2.83
6605 6944 1.029947 TGTCTAGAGATCGCCACGCA 61.030 55.000 0.00 0.00 0.00 5.24
6660 7173 9.866655 TCAGGCCAATCAAGAACTATTATTATT 57.133 29.630 5.01 0.00 0.00 1.40
6661 7174 9.512588 CTCAGGCCAATCAAGAACTATTATTAT 57.487 33.333 5.01 0.00 0.00 1.28
6662 7175 8.713971 TCTCAGGCCAATCAAGAACTATTATTA 58.286 33.333 5.01 0.00 0.00 0.98
6663 7176 7.577303 TCTCAGGCCAATCAAGAACTATTATT 58.423 34.615 5.01 0.00 0.00 1.40
6664 7177 7.141758 TCTCAGGCCAATCAAGAACTATTAT 57.858 36.000 5.01 0.00 0.00 1.28
6665 7178 6.560003 TCTCAGGCCAATCAAGAACTATTA 57.440 37.500 5.01 0.00 0.00 0.98
6666 7179 5.441718 TCTCAGGCCAATCAAGAACTATT 57.558 39.130 5.01 0.00 0.00 1.73
6668 7181 4.908601 TTCTCAGGCCAATCAAGAACTA 57.091 40.909 5.01 0.00 0.00 2.24
6669 7182 3.795688 TTCTCAGGCCAATCAAGAACT 57.204 42.857 5.01 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.