Multiple sequence alignment - TraesCS2A01G587900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G587900 chr2A 100.000 5327 0 0 1 5327 777512028 777517354 0.000000e+00 9838
1 TraesCS2A01G587900 chr2B 89.078 3058 221 44 2320 5327 779346593 779343599 0.000000e+00 3692
2 TraesCS2A01G587900 chr2B 88.203 729 36 19 1381 2065 779347592 779346870 0.000000e+00 824
3 TraesCS2A01G587900 chr2B 84.586 785 57 35 578 1332 779348345 779347595 0.000000e+00 721
4 TraesCS2A01G587900 chr2B 86.630 359 33 6 982 1333 770208097 770207747 3.010000e-102 383
5 TraesCS2A01G587900 chr2B 94.656 131 7 0 2064 2194 779346807 779346677 2.520000e-48 204
6 TraesCS2A01G587900 chr2D 89.240 1868 157 19 2565 4410 635233731 635231886 0.000000e+00 2296
7 TraesCS2A01G587900 chr2D 81.559 2207 219 93 352 2470 635235887 635233781 0.000000e+00 1648
8 TraesCS2A01G587900 chr2D 90.622 917 59 11 4430 5327 635231902 635230994 0.000000e+00 1192
9 TraesCS2A01G587900 chr2D 95.000 160 8 0 192 351 10431945 10432104 8.860000e-63 252
10 TraesCS2A01G587900 chr2D 85.714 168 23 1 192 358 47322489 47322656 5.480000e-40 176
11 TraesCS2A01G587900 chr7B 87.713 586 45 11 982 1549 708147675 708148251 0.000000e+00 658
12 TraesCS2A01G587900 chr7B 94.737 76 4 0 1 76 609422912 609422837 9.370000e-23 119
13 TraesCS2A01G587900 chr1A 87.329 584 50 11 982 1549 45536066 45536641 0.000000e+00 647
14 TraesCS2A01G587900 chr3B 86.072 359 35 7 982 1333 130449159 130449509 6.520000e-99 372
15 TraesCS2A01G587900 chr3B 84.071 226 28 7 982 1205 223629705 223629924 1.500000e-50 211
16 TraesCS2A01G587900 chr5A 85.091 275 26 10 982 1251 546049488 546049224 3.160000e-67 267
17 TraesCS2A01G587900 chr5A 90.909 55 5 0 355 409 374640286 374640232 2.060000e-09 75
18 TraesCS2A01G587900 chr3A 97.436 156 4 0 192 347 742378770 742378925 3.160000e-67 267
19 TraesCS2A01G587900 chr6B 84.141 227 27 7 982 1206 76847332 76847113 1.500000e-50 211
20 TraesCS2A01G587900 chr4B 83.700 227 28 7 982 1206 643410187 643410406 6.990000e-49 206
21 TraesCS2A01G587900 chr4A 91.724 145 12 0 210 354 729321688 729321832 9.050000e-48 202
22 TraesCS2A01G587900 chr7D 89.744 117 12 0 238 354 10340160 10340276 3.320000e-32 150
23 TraesCS2A01G587900 chr7D 94.737 76 4 0 1 76 561228820 561228745 9.370000e-23 119
24 TraesCS2A01G587900 chr7D 93.421 76 5 0 1 76 554144972 554145047 4.360000e-21 113
25 TraesCS2A01G587900 chr1D 83.648 159 20 5 198 351 442688755 442688598 1.550000e-30 145
26 TraesCS2A01G587900 chr3D 83.099 142 22 2 5184 5324 9100644 9100784 1.560000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G587900 chr2A 777512028 777517354 5326 False 9838.00 9838 100.000000 1 5327 1 chr2A.!!$F1 5326
1 TraesCS2A01G587900 chr2B 779343599 779348345 4746 True 1360.25 3692 89.130750 578 5327 4 chr2B.!!$R2 4749
2 TraesCS2A01G587900 chr2D 635230994 635235887 4893 True 1712.00 2296 87.140333 352 5327 3 chr2D.!!$R1 4975
3 TraesCS2A01G587900 chr7B 708147675 708148251 576 False 658.00 658 87.713000 982 1549 1 chr7B.!!$F1 567
4 TraesCS2A01G587900 chr1A 45536066 45536641 575 False 647.00 647 87.329000 982 1549 1 chr1A.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.099436 GTCCGTGCATTGAAGATGCC 59.901 55.0 8.36 0.25 43.94 4.40 F
970 1024 0.102120 GACAGGACTCTCGCCATCAG 59.898 60.0 0.00 0.00 0.00 2.90 F
2086 2321 0.902531 ACACTAGCCCATAACGTGCT 59.097 50.0 2.70 2.70 39.10 4.40 F
3409 3683 0.104037 ATGCCATCTCCCATCCTCCT 60.104 55.0 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2133 0.036765 GAGGCATGTCCACCAACGTA 60.037 55.0 8.58 0.0 37.29 3.57 R
2197 2441 0.523072 ACATTGCTAGTTTGCTGCGG 59.477 50.0 0.00 0.0 0.00 5.69 R
3494 3768 0.533951 AGCTGAGCATGTCGATGTGA 59.466 50.0 7.39 0.0 31.50 3.58 R
4440 4743 0.242825 GAATGGATGCATGCGATGGG 59.757 55.0 14.09 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.667370 CACATGCATACTCTTTGTTTACACA 58.333 36.000 0.00 0.00 0.00 3.72
25 26 7.307694 CACATGCATACTCTTTGTTTACACAT 58.692 34.615 0.00 0.00 31.06 3.21
26 27 8.450180 CACATGCATACTCTTTGTTTACACATA 58.550 33.333 0.00 0.00 31.06 2.29
27 28 8.668353 ACATGCATACTCTTTGTTTACACATAG 58.332 33.333 0.00 0.00 34.24 2.23
28 29 8.668353 CATGCATACTCTTTGTTTACACATAGT 58.332 33.333 0.00 0.14 34.50 2.12
29 30 8.028540 TGCATACTCTTTGTTTACACATAGTG 57.971 34.615 0.36 0.00 39.75 2.74
30 31 6.961554 GCATACTCTTTGTTTACACATAGTGC 59.038 38.462 0.00 0.04 36.98 4.40
31 32 7.360861 GCATACTCTTTGTTTACACATAGTGCA 60.361 37.037 7.46 0.00 36.98 4.57
32 33 6.300354 ACTCTTTGTTTACACATAGTGCAC 57.700 37.500 9.40 9.40 36.98 4.57
33 34 5.050363 ACTCTTTGTTTACACATAGTGCACG 60.050 40.000 12.01 0.00 36.98 5.34
34 35 4.812091 TCTTTGTTTACACATAGTGCACGT 59.188 37.500 12.01 5.33 36.98 4.49
35 36 5.984323 TCTTTGTTTACACATAGTGCACGTA 59.016 36.000 12.01 4.26 36.98 3.57
36 37 6.647481 TCTTTGTTTACACATAGTGCACGTAT 59.353 34.615 12.01 7.07 36.98 3.06
37 38 5.771602 TGTTTACACATAGTGCACGTATG 57.228 39.130 23.39 23.39 36.98 2.39
38 39 5.471257 TGTTTACACATAGTGCACGTATGA 58.529 37.500 28.07 13.50 36.98 2.15
39 40 5.927115 TGTTTACACATAGTGCACGTATGAA 59.073 36.000 28.07 16.85 36.98 2.57
40 41 6.424207 TGTTTACACATAGTGCACGTATGAAA 59.576 34.615 28.07 19.83 36.98 2.69
41 42 4.921470 ACACATAGTGCACGTATGAAAC 57.079 40.909 28.07 1.11 36.98 2.78
42 43 3.366724 ACACATAGTGCACGTATGAAACG 59.633 43.478 28.07 19.44 46.65 3.60
78 79 7.880059 AAAAATAGCAGCTCTTGATTTGAAC 57.120 32.000 0.00 0.00 0.00 3.18
79 80 6.579666 AAATAGCAGCTCTTGATTTGAACA 57.420 33.333 0.00 0.00 0.00 3.18
80 81 6.579666 AATAGCAGCTCTTGATTTGAACAA 57.420 33.333 0.00 0.00 0.00 2.83
81 82 6.770746 ATAGCAGCTCTTGATTTGAACAAT 57.229 33.333 0.00 0.00 0.00 2.71
82 83 5.464030 AGCAGCTCTTGATTTGAACAATT 57.536 34.783 0.00 0.00 0.00 2.32
83 84 5.850614 AGCAGCTCTTGATTTGAACAATTT 58.149 33.333 0.00 0.00 0.00 1.82
84 85 6.285990 AGCAGCTCTTGATTTGAACAATTTT 58.714 32.000 0.00 0.00 0.00 1.82
85 86 6.423001 AGCAGCTCTTGATTTGAACAATTTTC 59.577 34.615 0.00 0.00 0.00 2.29
86 87 6.423001 GCAGCTCTTGATTTGAACAATTTTCT 59.577 34.615 0.00 0.00 0.00 2.52
87 88 7.042254 GCAGCTCTTGATTTGAACAATTTTCTT 60.042 33.333 0.00 0.00 0.00 2.52
88 89 8.485591 CAGCTCTTGATTTGAACAATTTTCTTC 58.514 33.333 0.00 0.00 0.00 2.87
89 90 8.199449 AGCTCTTGATTTGAACAATTTTCTTCA 58.801 29.630 0.00 0.00 0.00 3.02
90 91 8.819974 GCTCTTGATTTGAACAATTTTCTTCAA 58.180 29.630 0.00 0.00 35.14 2.69
129 130 9.859427 AAAATTAATCTTCAAATTCTCATCGCA 57.141 25.926 0.00 0.00 0.00 5.10
130 131 9.859427 AAATTAATCTTCAAATTCTCATCGCAA 57.141 25.926 0.00 0.00 0.00 4.85
131 132 8.847444 ATTAATCTTCAAATTCTCATCGCAAC 57.153 30.769 0.00 0.00 0.00 4.17
132 133 4.326413 TCTTCAAATTCTCATCGCAACG 57.674 40.909 0.00 0.00 0.00 4.10
133 134 2.525750 TCAAATTCTCATCGCAACGC 57.474 45.000 0.00 0.00 0.00 4.84
134 135 1.130373 TCAAATTCTCATCGCAACGCC 59.870 47.619 0.00 0.00 0.00 5.68
135 136 0.451783 AAATTCTCATCGCAACGCCC 59.548 50.000 0.00 0.00 0.00 6.13
136 137 1.705337 AATTCTCATCGCAACGCCCG 61.705 55.000 0.00 0.00 0.00 6.13
137 138 4.812476 TCTCATCGCAACGCCCGG 62.812 66.667 0.00 0.00 0.00 5.73
141 142 4.708386 ATCGCAACGCCCGGGAAA 62.708 61.111 29.31 0.00 0.00 3.13
142 143 4.931633 TCGCAACGCCCGGGAAAA 62.932 61.111 29.31 0.00 0.00 2.29
143 144 3.743636 CGCAACGCCCGGGAAAAT 61.744 61.111 29.31 3.12 0.00 1.82
144 145 2.180769 GCAACGCCCGGGAAAATC 59.819 61.111 29.31 4.43 0.00 2.17
145 146 2.631580 GCAACGCCCGGGAAAATCA 61.632 57.895 29.31 0.00 0.00 2.57
146 147 1.211709 CAACGCCCGGGAAAATCAC 59.788 57.895 29.31 2.60 0.00 3.06
147 148 1.974875 AACGCCCGGGAAAATCACC 60.975 57.895 29.31 1.69 0.00 4.02
148 149 2.045340 CGCCCGGGAAAATCACCT 60.045 61.111 29.31 0.00 0.00 4.00
149 150 1.222387 CGCCCGGGAAAATCACCTA 59.778 57.895 29.31 0.00 0.00 3.08
150 151 0.814010 CGCCCGGGAAAATCACCTAG 60.814 60.000 29.31 0.00 0.00 3.02
151 152 0.255033 GCCCGGGAAAATCACCTAGT 59.745 55.000 29.31 0.00 0.00 2.57
152 153 1.340697 GCCCGGGAAAATCACCTAGTT 60.341 52.381 29.31 0.00 0.00 2.24
153 154 2.882643 GCCCGGGAAAATCACCTAGTTT 60.883 50.000 29.31 0.00 0.00 2.66
154 155 3.427573 CCCGGGAAAATCACCTAGTTTT 58.572 45.455 18.48 0.00 0.00 2.43
155 156 3.830178 CCCGGGAAAATCACCTAGTTTTT 59.170 43.478 18.48 0.00 33.10 1.94
156 157 5.011586 CCCGGGAAAATCACCTAGTTTTTA 58.988 41.667 18.48 0.00 31.15 1.52
157 158 5.655090 CCCGGGAAAATCACCTAGTTTTTAT 59.345 40.000 18.48 0.00 31.15 1.40
158 159 6.829811 CCCGGGAAAATCACCTAGTTTTTATA 59.170 38.462 18.48 0.00 31.15 0.98
159 160 7.012989 CCCGGGAAAATCACCTAGTTTTTATAG 59.987 40.741 18.48 0.00 31.15 1.31
160 161 7.415229 CGGGAAAATCACCTAGTTTTTATAGC 58.585 38.462 0.00 0.00 31.15 2.97
161 162 7.415229 GGGAAAATCACCTAGTTTTTATAGCG 58.585 38.462 0.00 0.00 31.15 4.26
162 163 7.066645 GGGAAAATCACCTAGTTTTTATAGCGT 59.933 37.037 0.00 0.00 31.15 5.07
163 164 8.121086 GGAAAATCACCTAGTTTTTATAGCGTC 58.879 37.037 0.00 0.00 31.15 5.19
164 165 7.549615 AAATCACCTAGTTTTTATAGCGTCC 57.450 36.000 0.00 0.00 0.00 4.79
165 166 4.675510 TCACCTAGTTTTTATAGCGTCCG 58.324 43.478 0.00 0.00 0.00 4.79
166 167 4.158394 TCACCTAGTTTTTATAGCGTCCGT 59.842 41.667 0.00 0.00 0.00 4.69
167 168 4.266976 CACCTAGTTTTTATAGCGTCCGTG 59.733 45.833 0.00 0.00 0.00 4.94
168 169 3.244579 CCTAGTTTTTATAGCGTCCGTGC 59.755 47.826 0.00 0.00 0.00 5.34
169 170 2.690786 AGTTTTTATAGCGTCCGTGCA 58.309 42.857 0.00 0.00 37.31 4.57
170 171 3.267483 AGTTTTTATAGCGTCCGTGCAT 58.733 40.909 0.00 0.00 37.31 3.96
171 172 3.687698 AGTTTTTATAGCGTCCGTGCATT 59.312 39.130 0.00 0.00 37.31 3.56
172 173 3.666883 TTTTATAGCGTCCGTGCATTG 57.333 42.857 0.00 0.00 37.31 2.82
173 174 2.588027 TTATAGCGTCCGTGCATTGA 57.412 45.000 0.00 0.00 37.31 2.57
174 175 2.588027 TATAGCGTCCGTGCATTGAA 57.412 45.000 0.00 0.00 37.31 2.69
175 176 1.290203 ATAGCGTCCGTGCATTGAAG 58.710 50.000 0.00 0.00 37.31 3.02
176 177 0.245266 TAGCGTCCGTGCATTGAAGA 59.755 50.000 0.00 0.00 37.31 2.87
177 178 0.391661 AGCGTCCGTGCATTGAAGAT 60.392 50.000 0.00 0.00 37.31 2.40
178 179 0.247814 GCGTCCGTGCATTGAAGATG 60.248 55.000 0.00 0.00 34.15 2.90
179 180 0.247814 CGTCCGTGCATTGAAGATGC 60.248 55.000 4.14 4.14 44.76 3.91
180 181 0.099436 GTCCGTGCATTGAAGATGCC 59.901 55.000 8.36 0.25 43.94 4.40
181 182 1.031571 TCCGTGCATTGAAGATGCCC 61.032 55.000 8.36 0.00 43.94 5.36
182 183 1.033746 CCGTGCATTGAAGATGCCCT 61.034 55.000 8.36 0.00 43.94 5.19
183 184 1.667236 CGTGCATTGAAGATGCCCTA 58.333 50.000 8.36 0.00 43.94 3.53
184 185 2.016318 CGTGCATTGAAGATGCCCTAA 58.984 47.619 8.36 0.00 43.94 2.69
185 186 2.032550 CGTGCATTGAAGATGCCCTAAG 59.967 50.000 8.36 0.00 43.94 2.18
186 187 3.282021 GTGCATTGAAGATGCCCTAAGA 58.718 45.455 8.36 0.00 43.94 2.10
187 188 3.887716 GTGCATTGAAGATGCCCTAAGAT 59.112 43.478 8.36 0.00 43.94 2.40
188 189 4.340381 GTGCATTGAAGATGCCCTAAGATT 59.660 41.667 8.36 0.00 43.94 2.40
189 190 4.957954 TGCATTGAAGATGCCCTAAGATTT 59.042 37.500 8.36 0.00 43.94 2.17
190 191 5.163488 TGCATTGAAGATGCCCTAAGATTTG 60.163 40.000 8.36 0.00 43.94 2.32
191 192 5.163478 GCATTGAAGATGCCCTAAGATTTGT 60.163 40.000 0.00 0.00 39.01 2.83
192 193 6.628844 GCATTGAAGATGCCCTAAGATTTGTT 60.629 38.462 0.00 0.00 39.01 2.83
193 194 5.902613 TGAAGATGCCCTAAGATTTGTTG 57.097 39.130 0.00 0.00 0.00 3.33
194 195 5.569355 TGAAGATGCCCTAAGATTTGTTGA 58.431 37.500 0.00 0.00 0.00 3.18
195 196 6.009589 TGAAGATGCCCTAAGATTTGTTGAA 58.990 36.000 0.00 0.00 0.00 2.69
196 197 6.493115 TGAAGATGCCCTAAGATTTGTTGAAA 59.507 34.615 0.00 0.00 0.00 2.69
197 198 6.272822 AGATGCCCTAAGATTTGTTGAAAC 57.727 37.500 0.00 0.00 0.00 2.78
198 199 5.774690 AGATGCCCTAAGATTTGTTGAAACA 59.225 36.000 0.00 0.00 37.08 2.83
199 200 5.860941 TGCCCTAAGATTTGTTGAAACAA 57.139 34.783 4.52 4.52 46.35 2.83
208 209 2.292103 TGTTGAAACAAGCAGGTTGC 57.708 45.000 12.41 0.00 40.15 4.17
217 218 3.993535 GCAGGTTGCTTCAGAGGG 58.006 61.111 0.00 0.00 40.96 4.30
218 219 2.338785 GCAGGTTGCTTCAGAGGGC 61.339 63.158 0.00 0.00 40.96 5.19
219 220 2.037136 CAGGTTGCTTCAGAGGGCG 61.037 63.158 0.00 0.00 0.00 6.13
220 221 2.217038 AGGTTGCTTCAGAGGGCGA 61.217 57.895 0.00 0.00 0.00 5.54
221 222 1.302511 GGTTGCTTCAGAGGGCGAA 60.303 57.895 0.00 0.00 0.00 4.70
222 223 1.578206 GGTTGCTTCAGAGGGCGAAC 61.578 60.000 0.00 0.00 0.00 3.95
223 224 0.603975 GTTGCTTCAGAGGGCGAACT 60.604 55.000 0.00 0.00 0.00 3.01
224 225 0.973632 TTGCTTCAGAGGGCGAACTA 59.026 50.000 0.00 0.00 0.00 2.24
225 226 0.246635 TGCTTCAGAGGGCGAACTAC 59.753 55.000 0.00 0.00 0.00 2.73
226 227 0.246635 GCTTCAGAGGGCGAACTACA 59.753 55.000 0.00 0.00 0.00 2.74
227 228 1.337823 GCTTCAGAGGGCGAACTACAA 60.338 52.381 0.00 0.00 0.00 2.41
228 229 2.338500 CTTCAGAGGGCGAACTACAAC 58.662 52.381 0.00 0.00 0.00 3.32
229 230 1.334160 TCAGAGGGCGAACTACAACA 58.666 50.000 0.00 0.00 0.00 3.33
230 231 1.689813 TCAGAGGGCGAACTACAACAA 59.310 47.619 0.00 0.00 0.00 2.83
231 232 2.103432 TCAGAGGGCGAACTACAACAAA 59.897 45.455 0.00 0.00 0.00 2.83
232 233 2.875933 CAGAGGGCGAACTACAACAAAA 59.124 45.455 0.00 0.00 0.00 2.44
233 234 2.876550 AGAGGGCGAACTACAACAAAAC 59.123 45.455 0.00 0.00 0.00 2.43
234 235 2.614983 GAGGGCGAACTACAACAAAACA 59.385 45.455 0.00 0.00 0.00 2.83
235 236 3.219281 AGGGCGAACTACAACAAAACAT 58.781 40.909 0.00 0.00 0.00 2.71
236 237 3.634910 AGGGCGAACTACAACAAAACATT 59.365 39.130 0.00 0.00 0.00 2.71
237 238 4.098807 AGGGCGAACTACAACAAAACATTT 59.901 37.500 0.00 0.00 0.00 2.32
238 239 4.208253 GGGCGAACTACAACAAAACATTTG 59.792 41.667 1.47 1.47 0.00 2.32
239 240 4.801516 GGCGAACTACAACAAAACATTTGT 59.198 37.500 2.76 2.76 39.31 2.83
240 241 5.289917 GGCGAACTACAACAAAACATTTGTT 59.710 36.000 13.79 13.79 42.75 2.83
250 251 6.121613 ACAAAACATTTGTTGCAAAGATGG 57.878 33.333 17.22 5.38 38.44 3.51
251 252 5.647225 ACAAAACATTTGTTGCAAAGATGGT 59.353 32.000 17.22 11.07 38.44 3.55
252 253 6.150809 ACAAAACATTTGTTGCAAAGATGGTT 59.849 30.769 17.22 15.07 38.44 3.67
253 254 7.335422 ACAAAACATTTGTTGCAAAGATGGTTA 59.665 29.630 16.76 0.00 38.44 2.85
254 255 7.481275 AAACATTTGTTGCAAAGATGGTTAG 57.519 32.000 15.55 0.00 38.44 2.34
255 256 6.160576 ACATTTGTTGCAAAGATGGTTAGT 57.839 33.333 17.22 1.32 0.00 2.24
256 257 5.984926 ACATTTGTTGCAAAGATGGTTAGTG 59.015 36.000 17.22 4.14 0.00 2.74
257 258 4.582701 TTGTTGCAAAGATGGTTAGTGG 57.417 40.909 0.00 0.00 0.00 4.00
258 259 2.890311 TGTTGCAAAGATGGTTAGTGGG 59.110 45.455 0.00 0.00 0.00 4.61
259 260 2.890945 GTTGCAAAGATGGTTAGTGGGT 59.109 45.455 0.00 0.00 0.00 4.51
260 261 4.076394 GTTGCAAAGATGGTTAGTGGGTA 58.924 43.478 0.00 0.00 0.00 3.69
261 262 3.950397 TGCAAAGATGGTTAGTGGGTAG 58.050 45.455 0.00 0.00 0.00 3.18
262 263 3.585289 TGCAAAGATGGTTAGTGGGTAGA 59.415 43.478 0.00 0.00 0.00 2.59
263 264 4.227300 TGCAAAGATGGTTAGTGGGTAGAT 59.773 41.667 0.00 0.00 0.00 1.98
264 265 4.816925 GCAAAGATGGTTAGTGGGTAGATC 59.183 45.833 0.00 0.00 0.00 2.75
265 266 5.629133 GCAAAGATGGTTAGTGGGTAGATCA 60.629 44.000 0.00 0.00 0.00 2.92
266 267 6.414732 CAAAGATGGTTAGTGGGTAGATCAA 58.585 40.000 0.00 0.00 0.00 2.57
267 268 6.636454 AAGATGGTTAGTGGGTAGATCAAA 57.364 37.500 0.00 0.00 0.00 2.69
268 269 5.990668 AGATGGTTAGTGGGTAGATCAAAC 58.009 41.667 0.00 0.00 0.00 2.93
269 270 5.487488 AGATGGTTAGTGGGTAGATCAAACA 59.513 40.000 0.00 0.00 0.00 2.83
270 271 5.160607 TGGTTAGTGGGTAGATCAAACAG 57.839 43.478 0.00 0.00 0.00 3.16
271 272 3.939592 GGTTAGTGGGTAGATCAAACAGC 59.060 47.826 0.00 0.00 0.00 4.40
272 273 2.789409 AGTGGGTAGATCAAACAGCC 57.211 50.000 0.00 0.00 0.00 4.85
273 274 1.985159 AGTGGGTAGATCAAACAGCCA 59.015 47.619 0.00 0.00 37.49 4.75
274 275 2.578021 AGTGGGTAGATCAAACAGCCAT 59.422 45.455 9.73 0.30 41.52 4.40
275 276 2.945668 GTGGGTAGATCAAACAGCCATC 59.054 50.000 9.73 3.04 41.52 3.51
276 277 2.846206 TGGGTAGATCAAACAGCCATCT 59.154 45.455 0.00 0.00 35.01 2.90
277 278 3.209410 GGGTAGATCAAACAGCCATCTG 58.791 50.000 0.00 0.00 45.71 2.90
278 279 2.615912 GGTAGATCAAACAGCCATCTGC 59.384 50.000 0.00 0.00 44.10 4.26
279 280 2.502142 AGATCAAACAGCCATCTGCA 57.498 45.000 0.00 0.00 44.10 4.41
280 281 2.366533 AGATCAAACAGCCATCTGCAG 58.633 47.619 7.63 7.63 44.10 4.41
281 282 0.815734 ATCAAACAGCCATCTGCAGC 59.184 50.000 9.47 0.00 44.10 5.25
282 283 0.251033 TCAAACAGCCATCTGCAGCT 60.251 50.000 9.47 0.00 44.10 4.24
283 284 0.170561 CAAACAGCCATCTGCAGCTC 59.829 55.000 9.47 0.00 44.10 4.09
284 285 0.964358 AAACAGCCATCTGCAGCTCC 60.964 55.000 9.47 0.00 44.10 4.70
285 286 2.133359 AACAGCCATCTGCAGCTCCA 62.133 55.000 9.47 0.00 44.10 3.86
286 287 1.152943 CAGCCATCTGCAGCTCCAT 60.153 57.895 9.47 0.00 44.83 3.41
287 288 1.148723 AGCCATCTGCAGCTCCATC 59.851 57.895 9.47 0.00 44.83 3.51
288 289 1.897615 GCCATCTGCAGCTCCATCC 60.898 63.158 9.47 0.00 40.77 3.51
289 290 1.530283 CCATCTGCAGCTCCATCCA 59.470 57.895 9.47 0.00 0.00 3.41
290 291 0.106868 CCATCTGCAGCTCCATCCAA 60.107 55.000 9.47 0.00 0.00 3.53
291 292 1.478837 CCATCTGCAGCTCCATCCAAT 60.479 52.381 9.47 0.00 0.00 3.16
292 293 1.609072 CATCTGCAGCTCCATCCAATG 59.391 52.381 9.47 0.00 0.00 2.82
300 301 2.042741 CCATCCAATGGCCAGGCA 60.043 61.111 15.19 5.03 44.70 4.75
301 302 2.131709 CCATCCAATGGCCAGGCAG 61.132 63.158 15.19 3.64 44.70 4.85
302 303 2.131709 CATCCAATGGCCAGGCAGG 61.132 63.158 15.19 10.44 41.84 4.85
303 304 2.629498 ATCCAATGGCCAGGCAGGT 61.629 57.895 15.19 0.00 40.61 4.00
304 305 2.866523 ATCCAATGGCCAGGCAGGTG 62.867 60.000 15.19 7.14 40.61 4.00
305 306 2.036098 CAATGGCCAGGCAGGTGA 59.964 61.111 15.19 0.00 40.61 4.02
306 307 1.380785 CAATGGCCAGGCAGGTGAT 60.381 57.895 15.19 0.00 40.61 3.06
307 308 1.076485 AATGGCCAGGCAGGTGATC 60.076 57.895 15.19 0.00 40.61 2.92
308 309 2.898920 AATGGCCAGGCAGGTGATCG 62.899 60.000 15.19 0.00 40.61 3.69
309 310 3.785859 GGCCAGGCAGGTGATCGA 61.786 66.667 15.19 0.00 40.61 3.59
310 311 2.507944 GCCAGGCAGGTGATCGAT 59.492 61.111 6.55 0.00 40.61 3.59
311 312 1.596477 GCCAGGCAGGTGATCGATC 60.596 63.158 18.72 18.72 40.61 3.69
312 313 2.037620 GCCAGGCAGGTGATCGATCT 62.038 60.000 25.02 3.30 40.61 2.75
313 314 0.467384 CCAGGCAGGTGATCGATCTT 59.533 55.000 25.02 9.09 0.00 2.40
314 315 1.134280 CCAGGCAGGTGATCGATCTTT 60.134 52.381 25.02 8.75 0.00 2.52
315 316 2.636830 CAGGCAGGTGATCGATCTTTT 58.363 47.619 25.02 8.41 0.00 2.27
316 317 3.012518 CAGGCAGGTGATCGATCTTTTT 58.987 45.455 25.02 6.70 0.00 1.94
317 318 3.064545 CAGGCAGGTGATCGATCTTTTTC 59.935 47.826 25.02 11.80 0.00 2.29
318 319 3.054802 AGGCAGGTGATCGATCTTTTTCT 60.055 43.478 25.02 12.82 0.00 2.52
319 320 3.064545 GGCAGGTGATCGATCTTTTTCTG 59.935 47.826 25.02 21.58 0.00 3.02
320 321 3.686726 GCAGGTGATCGATCTTTTTCTGT 59.313 43.478 25.02 0.17 0.00 3.41
321 322 4.154918 GCAGGTGATCGATCTTTTTCTGTT 59.845 41.667 25.02 0.00 0.00 3.16
322 323 5.351465 GCAGGTGATCGATCTTTTTCTGTTA 59.649 40.000 25.02 0.00 0.00 2.41
323 324 6.037610 GCAGGTGATCGATCTTTTTCTGTTAT 59.962 38.462 25.02 0.00 0.00 1.89
324 325 7.625553 CAGGTGATCGATCTTTTTCTGTTATC 58.374 38.462 25.02 2.31 0.00 1.75
325 326 6.763610 AGGTGATCGATCTTTTTCTGTTATCC 59.236 38.462 25.02 6.34 0.00 2.59
326 327 6.292381 GGTGATCGATCTTTTTCTGTTATCCG 60.292 42.308 25.02 0.00 0.00 4.18
327 328 5.234329 TGATCGATCTTTTTCTGTTATCCGC 59.766 40.000 25.02 0.00 0.00 5.54
328 329 3.869246 TCGATCTTTTTCTGTTATCCGCC 59.131 43.478 0.00 0.00 0.00 6.13
329 330 3.302480 CGATCTTTTTCTGTTATCCGCCG 60.302 47.826 0.00 0.00 0.00 6.46
330 331 2.352388 TCTTTTTCTGTTATCCGCCGG 58.648 47.619 0.00 0.00 0.00 6.13
331 332 0.806241 TTTTTCTGTTATCCGCCGGC 59.194 50.000 19.07 19.07 0.00 6.13
332 333 0.321741 TTTTCTGTTATCCGCCGGCA 60.322 50.000 28.98 8.41 0.00 5.69
333 334 0.742990 TTTCTGTTATCCGCCGGCAG 60.743 55.000 28.98 16.96 0.00 4.85
334 335 1.609635 TTCTGTTATCCGCCGGCAGA 61.610 55.000 28.98 22.78 34.80 4.26
335 336 1.883084 CTGTTATCCGCCGGCAGAC 60.883 63.158 28.98 16.46 0.00 3.51
336 337 2.960129 GTTATCCGCCGGCAGACG 60.960 66.667 28.98 9.99 43.80 4.18
337 338 4.884257 TTATCCGCCGGCAGACGC 62.884 66.667 28.98 0.00 42.52 5.19
362 363 3.815401 AGTGTCGCCCTAAATTATCATGC 59.185 43.478 0.00 0.00 0.00 4.06
366 367 5.126222 TGTCGCCCTAAATTATCATGCAAAA 59.874 36.000 0.00 0.00 0.00 2.44
368 369 4.440758 CGCCCTAAATTATCATGCAAAACG 59.559 41.667 0.00 0.00 0.00 3.60
373 374 7.543868 CCCTAAATTATCATGCAAAACGTTTGA 59.456 33.333 15.46 8.25 0.00 2.69
396 397 9.515020 TTGATTTGTCATGTCTAAAAACTTGAC 57.485 29.630 13.20 13.20 46.53 3.18
397 398 8.134895 TGATTTGTCATGTCTAAAAACTTGACC 58.865 33.333 15.91 5.77 46.13 4.02
398 399 7.397892 TTTGTCATGTCTAAAAACTTGACCA 57.602 32.000 15.91 6.65 46.13 4.02
399 400 6.371809 TGTCATGTCTAAAAACTTGACCAC 57.628 37.500 15.91 0.00 46.13 4.16
400 401 5.883115 TGTCATGTCTAAAAACTTGACCACA 59.117 36.000 15.91 1.69 46.13 4.17
401 402 6.038161 TGTCATGTCTAAAAACTTGACCACAG 59.962 38.462 15.91 0.00 46.13 3.66
402 403 6.260050 GTCATGTCTAAAAACTTGACCACAGA 59.740 38.462 10.34 0.00 43.35 3.41
403 404 6.998074 TCATGTCTAAAAACTTGACCACAGAT 59.002 34.615 0.00 0.00 30.81 2.90
404 405 7.502226 TCATGTCTAAAAACTTGACCACAGATT 59.498 33.333 0.00 0.00 30.81 2.40
405 406 7.639113 TGTCTAAAAACTTGACCACAGATTT 57.361 32.000 0.00 0.00 0.00 2.17
406 407 8.062065 TGTCTAAAAACTTGACCACAGATTTT 57.938 30.769 0.00 0.00 31.17 1.82
446 451 3.608316 TGGATTAAGCATTTGGGTTGC 57.392 42.857 0.00 0.00 37.84 4.17
457 462 1.459455 TTGGGTTGCGTGAATGTGGG 61.459 55.000 0.00 0.00 0.00 4.61
479 484 4.841029 CGAGTCGTCGCTTCTCAA 57.159 55.556 3.82 0.00 39.88 3.02
482 487 1.383744 CGAGTCGTCGCTTCTCAAAAG 59.616 52.381 3.82 0.00 39.88 2.27
538 544 0.798776 CCAATGAAGAGCCGTCACAC 59.201 55.000 0.00 0.00 0.00 3.82
541 547 0.388649 ATGAAGAGCCGTCACACGAC 60.389 55.000 0.00 0.00 46.05 4.34
571 577 3.885297 CGCACAGGAATCTCCCATTTATT 59.115 43.478 0.00 0.00 37.19 1.40
572 578 4.339247 CGCACAGGAATCTCCCATTTATTT 59.661 41.667 0.00 0.00 37.19 1.40
573 579 5.594926 GCACAGGAATCTCCCATTTATTTG 58.405 41.667 0.00 0.00 37.19 2.32
574 580 5.594926 CACAGGAATCTCCCATTTATTTGC 58.405 41.667 0.00 0.00 37.19 3.68
575 581 5.361857 CACAGGAATCTCCCATTTATTTGCT 59.638 40.000 0.00 0.00 37.19 3.91
576 582 5.960202 ACAGGAATCTCCCATTTATTTGCTT 59.040 36.000 0.00 0.00 37.19 3.91
577 583 6.441604 ACAGGAATCTCCCATTTATTTGCTTT 59.558 34.615 0.00 0.00 37.19 3.51
578 584 7.038088 ACAGGAATCTCCCATTTATTTGCTTTT 60.038 33.333 0.00 0.00 37.19 2.27
579 585 7.825761 CAGGAATCTCCCATTTATTTGCTTTTT 59.174 33.333 0.00 0.00 37.19 1.94
736 746 3.727258 CCCACGCCCCTCCATGAA 61.727 66.667 0.00 0.00 0.00 2.57
762 772 0.833834 CCACTGGACCTCACTCACCT 60.834 60.000 0.00 0.00 0.00 4.00
765 775 0.542938 CTGGACCTCACTCACCTCCA 60.543 60.000 0.00 0.00 0.00 3.86
771 781 2.603473 CACTCACCTCCACCCGGA 60.603 66.667 0.73 0.00 39.79 5.14
786 796 1.299648 CGGAGCCCACAAGAATCCA 59.700 57.895 0.00 0.00 0.00 3.41
787 797 1.026718 CGGAGCCCACAAGAATCCAC 61.027 60.000 0.00 0.00 0.00 4.02
792 802 0.321564 CCCACAAGAATCCACGCTCA 60.322 55.000 0.00 0.00 0.00 4.26
793 803 1.522668 CCACAAGAATCCACGCTCAA 58.477 50.000 0.00 0.00 0.00 3.02
794 804 1.879380 CCACAAGAATCCACGCTCAAA 59.121 47.619 0.00 0.00 0.00 2.69
797 807 2.549754 ACAAGAATCCACGCTCAAACAG 59.450 45.455 0.00 0.00 0.00 3.16
812 822 3.625897 CAGGGTCCAGTGCACCGA 61.626 66.667 14.63 6.68 34.33 4.69
952 1006 3.354645 AGACGCAGACGCAGACGA 61.355 61.111 0.00 0.00 45.53 4.20
953 1007 3.166630 GACGCAGACGCAGACGAC 61.167 66.667 0.00 0.00 45.53 4.34
954 1008 3.874141 GACGCAGACGCAGACGACA 62.874 63.158 0.00 0.00 45.53 4.35
955 1009 3.168604 CGCAGACGCAGACGACAG 61.169 66.667 0.00 0.00 43.93 3.51
957 1011 2.954611 CAGACGCAGACGACAGGA 59.045 61.111 0.00 0.00 43.93 3.86
958 1012 1.442857 CAGACGCAGACGACAGGAC 60.443 63.158 0.00 0.00 43.93 3.85
959 1013 1.601197 AGACGCAGACGACAGGACT 60.601 57.895 0.00 0.00 43.93 3.85
960 1014 1.154188 GACGCAGACGACAGGACTC 60.154 63.158 0.00 0.00 43.93 3.36
961 1015 1.579084 GACGCAGACGACAGGACTCT 61.579 60.000 0.00 0.00 43.93 3.24
962 1016 1.135731 CGCAGACGACAGGACTCTC 59.864 63.158 0.00 0.00 43.93 3.20
963 1017 1.135731 GCAGACGACAGGACTCTCG 59.864 63.158 0.00 0.00 35.96 4.04
964 1018 1.135731 CAGACGACAGGACTCTCGC 59.864 63.158 0.00 0.00 32.98 5.03
965 1019 2.041686 AGACGACAGGACTCTCGCC 61.042 63.158 0.00 0.00 32.98 5.54
966 1020 2.282251 ACGACAGGACTCTCGCCA 60.282 61.111 0.00 0.00 32.98 5.69
967 1021 1.658686 GACGACAGGACTCTCGCCAT 61.659 60.000 0.00 0.00 32.98 4.40
968 1022 1.064946 CGACAGGACTCTCGCCATC 59.935 63.158 0.00 0.00 0.00 3.51
969 1023 1.657751 CGACAGGACTCTCGCCATCA 61.658 60.000 0.00 0.00 0.00 3.07
970 1024 0.102120 GACAGGACTCTCGCCATCAG 59.898 60.000 0.00 0.00 0.00 2.90
971 1025 1.326213 ACAGGACTCTCGCCATCAGG 61.326 60.000 0.00 0.00 38.23 3.86
972 1026 1.760086 AGGACTCTCGCCATCAGGG 60.760 63.158 0.00 0.00 40.85 4.45
1138 1213 3.209097 GCATGCGGCGGTAATGGT 61.209 61.111 9.78 0.00 0.00 3.55
1139 1214 1.890041 GCATGCGGCGGTAATGGTA 60.890 57.895 9.78 0.00 0.00 3.25
1156 1231 1.604308 TACGGTGGCGGAGACTGAA 60.604 57.895 0.00 0.00 34.59 3.02
1157 1232 0.968901 TACGGTGGCGGAGACTGAAT 60.969 55.000 0.00 0.00 34.59 2.57
1164 1239 1.523758 GCGGAGACTGAATGGTGTTT 58.476 50.000 0.00 0.00 0.00 2.83
1166 1241 2.350772 GCGGAGACTGAATGGTGTTTTG 60.351 50.000 0.00 0.00 0.00 2.44
1167 1242 2.878406 CGGAGACTGAATGGTGTTTTGT 59.122 45.455 0.00 0.00 0.00 2.83
1168 1243 3.303990 CGGAGACTGAATGGTGTTTTGTG 60.304 47.826 0.00 0.00 0.00 3.33
1169 1244 3.004734 GGAGACTGAATGGTGTTTTGTGG 59.995 47.826 0.00 0.00 0.00 4.17
1170 1245 2.362077 AGACTGAATGGTGTTTTGTGGC 59.638 45.455 0.00 0.00 0.00 5.01
1175 1256 4.264638 GGTGTTTTGTGGCGCGCT 62.265 61.111 32.29 0.00 0.00 5.92
1177 1258 2.899838 TGTTTTGTGGCGCGCTCT 60.900 55.556 32.29 0.00 0.00 4.09
1293 1374 4.043100 GCAGGTAACCCGCCCCTT 62.043 66.667 0.00 0.00 35.12 3.95
1294 1375 2.271173 CAGGTAACCCGCCCCTTC 59.729 66.667 0.00 0.00 35.12 3.46
1295 1376 3.013327 AGGTAACCCGCCCCTTCC 61.013 66.667 0.00 0.00 35.12 3.46
1296 1377 3.013327 GGTAACCCGCCCCTTCCT 61.013 66.667 0.00 0.00 0.00 3.36
1356 1449 4.776322 TGACGCCCCGCTTCCATG 62.776 66.667 0.00 0.00 0.00 3.66
1368 1461 2.807837 CGCTTCCATGCATATCTGGTGA 60.808 50.000 0.00 0.00 34.03 4.02
1411 1515 4.794278 ACTGATACGTGATTGGTGTGTA 57.206 40.909 0.00 0.00 0.00 2.90
1620 1767 1.234821 TGAGTTTCATGGTGGCGTTC 58.765 50.000 0.00 0.00 0.00 3.95
1751 1904 1.518903 GAGCCACACTCCAAAGCACC 61.519 60.000 0.00 0.00 39.75 5.01
1790 1943 3.776969 TGTGCTAATCAGGATTCAGGAGT 59.223 43.478 0.00 0.00 32.50 3.85
1812 1965 7.014422 GGAGTAACCTGATATGCTAAGTACAGT 59.986 40.741 0.00 0.00 35.41 3.55
1813 1966 8.991783 AGTAACCTGATATGCTAAGTACAGTA 57.008 34.615 0.00 0.00 0.00 2.74
1815 1968 9.460906 GTAACCTGATATGCTAAGTACAGTAAC 57.539 37.037 0.00 0.00 0.00 2.50
1897 2055 8.251750 CAGTTTTGGATTACGACTGATTTAGA 57.748 34.615 0.00 0.00 39.97 2.10
1898 2056 8.383619 CAGTTTTGGATTACGACTGATTTAGAG 58.616 37.037 0.00 0.00 39.97 2.43
1902 2060 6.338146 TGGATTACGACTGATTTAGAGGTTG 58.662 40.000 0.00 0.00 0.00 3.77
1903 2061 5.753921 GGATTACGACTGATTTAGAGGTTGG 59.246 44.000 0.00 0.00 0.00 3.77
1915 2078 8.152898 TGATTTAGAGGTTGGATCAGATGTATG 58.847 37.037 0.00 0.00 0.00 2.39
1920 2083 3.062763 GTTGGATCAGATGTATGCTCCG 58.937 50.000 0.00 0.00 38.14 4.63
1922 2085 3.496331 TGGATCAGATGTATGCTCCGTA 58.504 45.455 0.00 0.00 38.14 4.02
1962 2133 4.019174 CTCCATTTTCAGGTGGCATAACT 58.981 43.478 0.00 0.00 35.43 2.24
1998 2169 1.349026 CCTCTCAACAGCTTCCCTTCA 59.651 52.381 0.00 0.00 0.00 3.02
2001 2172 2.172505 TCTCAACAGCTTCCCTTCAACA 59.827 45.455 0.00 0.00 0.00 3.33
2057 2228 2.032924 GTGTTCCCTTCTTGGACGTTTG 59.967 50.000 0.00 0.00 38.35 2.93
2086 2321 0.902531 ACACTAGCCCATAACGTGCT 59.097 50.000 2.70 2.70 39.10 4.40
2127 2371 7.040961 GCCTTTTCTGTTACTAACACCAACATA 60.041 37.037 0.00 0.00 36.25 2.29
2135 2379 9.344772 TGTTACTAACACCAACATACTTGATTT 57.655 29.630 0.00 0.00 36.25 2.17
2154 2398 1.543944 TTCAGGTGGATGCAGCTCGA 61.544 55.000 16.66 13.93 0.00 4.04
2197 2441 2.064014 GTAAGTGGCACGGTTCAGTAC 58.936 52.381 12.71 3.96 0.00 2.73
2217 2461 1.068333 CCGCAGCAAACTAGCAATGTT 60.068 47.619 0.00 0.00 36.85 2.71
2231 2475 6.870965 ACTAGCAATGTTAAGAGTCAGAACAG 59.129 38.462 13.36 4.78 36.57 3.16
2232 2476 5.858381 AGCAATGTTAAGAGTCAGAACAGA 58.142 37.500 13.36 0.00 36.57 3.41
2240 2484 9.477484 TGTTAAGAGTCAGAACAGAGAATTTAC 57.523 33.333 5.92 0.00 0.00 2.01
2241 2485 9.699703 GTTAAGAGTCAGAACAGAGAATTTACT 57.300 33.333 0.00 0.00 0.00 2.24
2271 2515 4.763793 ACCATATGCATAGGATTTCAGCAC 59.236 41.667 19.55 0.00 38.12 4.40
2274 2518 6.349115 CCATATGCATAGGATTTCAGCACTTC 60.349 42.308 19.55 0.00 38.12 3.01
2280 2539 4.363991 AGGATTTCAGCACTTCTCAGTT 57.636 40.909 0.00 0.00 0.00 3.16
2281 2540 4.070716 AGGATTTCAGCACTTCTCAGTTG 58.929 43.478 0.00 0.00 0.00 3.16
2295 2554 4.060900 TCTCAGTTGTGCTTCATCTGAAC 58.939 43.478 17.19 0.00 45.98 3.18
2305 2564 4.216902 TGCTTCATCTGAACCTGTTTCATG 59.783 41.667 0.00 0.00 43.54 3.07
2308 2567 4.326826 TCATCTGAACCTGTTTCATGTCC 58.673 43.478 0.00 0.00 43.54 4.02
2309 2568 3.855255 TCTGAACCTGTTTCATGTCCA 57.145 42.857 0.00 0.00 43.54 4.02
2310 2569 3.743521 TCTGAACCTGTTTCATGTCCAG 58.256 45.455 0.00 0.00 43.54 3.86
2311 2570 3.136443 TCTGAACCTGTTTCATGTCCAGT 59.864 43.478 0.00 0.00 43.54 4.00
2312 2571 3.885297 CTGAACCTGTTTCATGTCCAGTT 59.115 43.478 0.00 0.00 43.54 3.16
2313 2572 3.882888 TGAACCTGTTTCATGTCCAGTTC 59.117 43.478 0.00 1.44 39.45 3.01
2314 2573 3.864789 ACCTGTTTCATGTCCAGTTCT 57.135 42.857 0.00 0.00 0.00 3.01
2315 2574 3.480470 ACCTGTTTCATGTCCAGTTCTG 58.520 45.455 0.00 0.00 0.00 3.02
2316 2575 3.136443 ACCTGTTTCATGTCCAGTTCTGA 59.864 43.478 1.00 0.00 0.00 3.27
2317 2576 4.136796 CCTGTTTCATGTCCAGTTCTGAA 58.863 43.478 1.00 0.00 0.00 3.02
2318 2577 4.763793 CCTGTTTCATGTCCAGTTCTGAAT 59.236 41.667 1.00 0.00 0.00 2.57
2319 2578 5.939883 CCTGTTTCATGTCCAGTTCTGAATA 59.060 40.000 1.00 0.00 0.00 1.75
2320 2579 6.600822 CCTGTTTCATGTCCAGTTCTGAATAT 59.399 38.462 1.00 0.00 0.00 1.28
2321 2580 7.770433 CCTGTTTCATGTCCAGTTCTGAATATA 59.230 37.037 1.00 0.00 0.00 0.86
2322 2581 9.334947 CTGTTTCATGTCCAGTTCTGAATATAT 57.665 33.333 1.00 0.00 0.00 0.86
2334 2593 9.107177 CAGTTCTGAATATATCTGACTTGCTTT 57.893 33.333 0.00 0.00 35.94 3.51
2345 2604 7.789273 ATCTGACTTGCTTTATCTTCTCATG 57.211 36.000 0.00 0.00 0.00 3.07
2410 2669 5.542616 CAAGCAAATTGGAGAGTCTACTG 57.457 43.478 3.47 0.00 35.08 2.74
2452 2714 7.171167 GGACTTAAGGTCAGTTTCTCAACTAAC 59.829 40.741 7.53 0.00 46.16 2.34
2501 2772 6.483640 ACACTATTGTCAACCTCTGTTTCTTC 59.516 38.462 0.00 0.00 30.42 2.87
2504 2775 7.775561 ACTATTGTCAACCTCTGTTTCTTCTTT 59.224 33.333 0.00 0.00 30.42 2.52
2507 2778 5.126779 GTCAACCTCTGTTTCTTCTTTCCT 58.873 41.667 0.00 0.00 30.42 3.36
2513 2784 7.574607 ACCTCTGTTTCTTCTTTCCTTTTCTA 58.425 34.615 0.00 0.00 0.00 2.10
2590 2863 1.992557 TCTTTTATGTGCCCCTCTGGT 59.007 47.619 0.00 0.00 36.04 4.00
2641 2914 0.179134 ACATCGAGGTACGCTGCTTC 60.179 55.000 0.00 0.00 41.04 3.86
2642 2915 0.179137 CATCGAGGTACGCTGCTTCA 60.179 55.000 0.00 0.00 42.26 3.02
2646 2919 1.565305 GAGGTACGCTGCTTCATCAG 58.435 55.000 0.00 0.00 37.15 2.90
2661 2934 5.106634 GCTTCATCAGCTCTGCCATATTTAG 60.107 44.000 0.00 0.00 46.27 1.85
2771 3044 6.038382 TCGTTACATTGGCAAAGTACAAAAGA 59.962 34.615 14.28 7.73 0.00 2.52
2808 3081 1.067416 GAGCGCATACCGGATGTCA 59.933 57.895 9.46 0.00 37.90 3.58
2810 3083 1.520564 GCGCATACCGGATGTCACA 60.521 57.895 9.46 0.00 37.90 3.58
2861 3134 4.848562 TCCTCGATCTTACGCAACATAT 57.151 40.909 0.00 0.00 0.00 1.78
2867 3140 6.447162 TCGATCTTACGCAACATATCTGAAT 58.553 36.000 0.00 0.00 0.00 2.57
2903 3176 6.036300 CAGCATGGTAATTTACATTTTGCCAG 59.964 38.462 8.73 4.37 0.00 4.85
2910 3183 9.083080 GGTAATTTACATTTTGCCAGAATGTAC 57.917 33.333 17.54 10.22 44.93 2.90
2916 3189 4.846779 TTTTGCCAGAATGTACTTGGTC 57.153 40.909 0.00 0.00 0.00 4.02
2922 3195 4.322801 GCCAGAATGTACTTGGTCACTACT 60.323 45.833 0.00 0.00 0.00 2.57
2928 3201 4.333690 TGTACTTGGTCACTACTCTCTCC 58.666 47.826 0.00 0.00 0.00 3.71
2933 3206 1.018910 GTCACTACTCTCTCCGAGCC 58.981 60.000 0.00 0.00 43.85 4.70
2981 3254 5.409520 TGACTGTACAATTCAGAGTGAATGC 59.590 40.000 2.96 0.00 45.57 3.56
3038 3311 1.048724 TACCCAGGGAGGAATCAGCG 61.049 60.000 14.54 0.00 41.22 5.18
3053 3326 5.220681 GGAATCAGCGGTTAGAGATTTGAAC 60.221 44.000 0.25 0.00 31.35 3.18
3077 3350 0.324943 CCATGAAGGACACCGAGGTT 59.675 55.000 0.00 0.00 41.22 3.50
3110 3383 4.121317 CAGAAGGAGCTCATCTTCACATC 58.879 47.826 25.35 9.85 41.16 3.06
3177 3450 3.181497 GCGACGACATACTAGTTTACCCA 60.181 47.826 0.00 0.00 0.00 4.51
3201 3475 0.473117 TTCCCCGGTTCTCTTGGTCT 60.473 55.000 0.00 0.00 0.00 3.85
3216 3490 6.045072 TCTTGGTCTGTGTTTTACCGATAT 57.955 37.500 0.00 0.00 35.98 1.63
3297 3571 1.670811 CATTACCTCGCATTTTCGGCT 59.329 47.619 0.00 0.00 0.00 5.52
3401 3675 1.602311 CTGCTTGTATGCCATCTCCC 58.398 55.000 0.00 0.00 0.00 4.30
3407 3681 1.980765 TGTATGCCATCTCCCATCCTC 59.019 52.381 0.00 0.00 0.00 3.71
3409 3683 0.104037 ATGCCATCTCCCATCCTCCT 60.104 55.000 0.00 0.00 0.00 3.69
3422 3696 0.255033 TCCTCCTCGATTCCGACTCA 59.745 55.000 0.00 0.00 40.30 3.41
3425 3699 2.562635 CTCCTCGATTCCGACTCACTA 58.437 52.381 0.00 0.00 40.30 2.74
3427 3701 1.003759 CCTCGATTCCGACTCACTACG 60.004 57.143 0.00 0.00 40.30 3.51
3446 3720 3.131396 ACGACCTTGTGATCAACAGTTC 58.869 45.455 0.00 0.00 40.74 3.01
3447 3721 3.181465 ACGACCTTGTGATCAACAGTTCT 60.181 43.478 0.00 0.00 40.74 3.01
3448 3722 4.038763 ACGACCTTGTGATCAACAGTTCTA 59.961 41.667 0.00 0.00 40.74 2.10
3449 3723 4.623167 CGACCTTGTGATCAACAGTTCTAG 59.377 45.833 0.00 0.00 40.74 2.43
3450 3724 4.899502 ACCTTGTGATCAACAGTTCTAGG 58.100 43.478 0.00 2.32 40.74 3.02
3451 3725 3.686726 CCTTGTGATCAACAGTTCTAGGC 59.313 47.826 0.00 0.00 40.74 3.93
3452 3726 4.564406 CCTTGTGATCAACAGTTCTAGGCT 60.564 45.833 0.00 0.00 40.74 4.58
3453 3727 4.623932 TGTGATCAACAGTTCTAGGCTT 57.376 40.909 0.00 0.00 33.78 4.35
3474 3748 3.782046 TCTAGCTAGGCTAACTTTTGCG 58.218 45.455 20.58 0.00 40.82 4.85
3515 3789 0.533951 ACATCGACATGCTCAGCTCA 59.466 50.000 0.00 0.00 32.57 4.26
3609 3883 3.338249 TCATCTCTGCAGGTTAGTTTGC 58.662 45.455 15.13 0.00 40.67 3.68
3612 3886 4.617253 TCTCTGCAGGTTAGTTTGCTTA 57.383 40.909 15.13 0.00 40.87 3.09
3635 3909 2.286950 ACTGTTTGTGTAAGCATGCACG 60.287 45.455 21.98 5.78 44.20 5.34
3639 3913 2.679355 TGTGTAAGCATGCACGTTTC 57.321 45.000 21.98 4.16 44.20 2.78
3640 3914 1.943340 TGTGTAAGCATGCACGTTTCA 59.057 42.857 21.98 6.92 44.20 2.69
3641 3915 2.286713 TGTGTAAGCATGCACGTTTCAC 60.287 45.455 21.98 18.35 44.20 3.18
3642 3916 2.032030 GTGTAAGCATGCACGTTTCACT 60.032 45.455 21.98 0.00 32.42 3.41
3651 3925 1.597937 GCACGTTTCACTTTCAGCAGG 60.598 52.381 0.00 0.00 0.00 4.85
3658 3932 5.122239 CGTTTCACTTTCAGCAGGATCATAA 59.878 40.000 0.00 0.00 0.00 1.90
3675 3949 7.389884 AGGATCATAATGCTAAACTACTGCATG 59.610 37.037 0.00 0.00 45.29 4.06
3695 3977 5.503683 GCATGCATACAGAACTGATGAGAAC 60.504 44.000 14.21 0.00 0.00 3.01
3696 3978 4.507710 TGCATACAGAACTGATGAGAACC 58.492 43.478 8.87 0.00 0.00 3.62
3701 3983 3.007398 ACAGAACTGATGAGAACCCACTC 59.993 47.826 8.87 0.00 37.42 3.51
3731 4013 4.681744 TCCACAAATTTCTGCAGTTTGTC 58.318 39.130 23.63 0.00 42.35 3.18
3773 4055 3.096092 TGGGAAAAAGTATGGCATCACC 58.904 45.455 1.65 0.00 39.84 4.02
3861 4147 2.435069 AGCAGTGCATCTTAGCAGAGAT 59.565 45.455 19.20 0.00 46.69 2.75
3873 4159 2.034048 GCAGAGATCGGGGGAGTTCC 62.034 65.000 0.00 0.00 0.00 3.62
3874 4160 0.687757 CAGAGATCGGGGGAGTTCCA 60.688 60.000 0.00 0.00 37.91 3.53
3875 4161 0.688087 AGAGATCGGGGGAGTTCCAC 60.688 60.000 0.00 0.00 39.21 4.02
3876 4162 0.688087 GAGATCGGGGGAGTTCCACT 60.688 60.000 0.00 0.00 40.05 4.00
3877 4163 0.635009 AGATCGGGGGAGTTCCACTA 59.365 55.000 0.00 0.00 40.05 2.74
3888 4184 5.280521 GGGGAGTTCCACTATCTGAAAGAAA 60.281 44.000 0.00 0.00 41.37 2.52
3943 4242 9.585099 TTATTTGCTCCAAATGTAATGTTGATC 57.415 29.630 12.14 0.00 42.91 2.92
3964 4264 3.920412 TCGCGATGATAGGATCAAAATCG 59.080 43.478 3.71 3.36 43.50 3.34
3989 4289 3.969287 ACTCAAGAGCTGCATCACTTA 57.031 42.857 1.02 0.00 0.00 2.24
3994 4294 5.494724 TCAAGAGCTGCATCACTTATTTCT 58.505 37.500 1.02 0.00 0.00 2.52
4046 4347 0.472471 ACATCGTGGTGTGGAAACCT 59.528 50.000 0.00 0.00 41.16 3.50
4085 4386 1.000506 GACGACACCCATGCCGTATAT 59.999 52.381 0.00 0.00 35.22 0.86
4091 4392 3.210227 CACCCATGCCGTATATCACAAA 58.790 45.455 0.00 0.00 0.00 2.83
4113 4414 0.035176 CCGGGTTCGTTTCCCAACTA 59.965 55.000 0.00 0.00 44.81 2.24
4121 4423 4.635833 TCGTTTCCCAACTACCAAAAAC 57.364 40.909 0.00 0.00 0.00 2.43
4142 4445 6.743575 AACACTATGAATCTTTACACTGCC 57.256 37.500 0.00 0.00 0.00 4.85
4161 4464 2.356135 CCCCAACAGTCCTACAATTCG 58.644 52.381 0.00 0.00 0.00 3.34
4206 4509 3.248363 CACTTCGTTTGCAGAACATCTCA 59.752 43.478 10.82 0.00 0.00 3.27
4344 4647 7.548075 GCCAAGTAAAACTGTAGAGCTACAATA 59.452 37.037 11.14 1.46 44.47 1.90
4347 4650 9.517609 AAGTAAAACTGTAGAGCTACAATATCG 57.482 33.333 11.14 2.84 44.47 2.92
4404 4707 8.715088 CGCTGTGTAGTATGTAGTATGTATGTA 58.285 37.037 0.00 0.00 0.00 2.29
4418 4721 7.763356 AGTATGTATGTATCCAGATTCGTAGC 58.237 38.462 0.00 0.00 0.00 3.58
4419 4722 5.386958 TGTATGTATCCAGATTCGTAGCC 57.613 43.478 0.00 0.00 0.00 3.93
4425 4728 1.822990 TCCAGATTCGTAGCCGTTTCT 59.177 47.619 0.00 0.00 35.01 2.52
4440 4743 4.495844 GCCGTTTCTCTGTGTATAATTGGC 60.496 45.833 0.00 0.00 0.00 4.52
4444 4748 5.387113 TTCTCTGTGTATAATTGGCCCAT 57.613 39.130 0.00 0.00 0.00 4.00
4445 4749 4.973168 TCTCTGTGTATAATTGGCCCATC 58.027 43.478 0.00 0.00 0.00 3.51
4463 4767 1.829096 CGCATGCATCCATTCCCCA 60.829 57.895 19.57 0.00 0.00 4.96
4470 4774 1.966295 GCATCCATTCCCCACCATTGT 60.966 52.381 0.00 0.00 0.00 2.71
4477 4781 5.103301 TCCATTCCCCACCATTGTTGTATAT 60.103 40.000 0.00 0.00 0.00 0.86
4481 4785 4.418526 TCCCCACCATTGTTGTATATCCAT 59.581 41.667 0.00 0.00 0.00 3.41
4521 4827 7.506114 ACACAGTGTAGGTTATTTCTCTGAAA 58.494 34.615 3.69 0.00 0.00 2.69
4630 4936 0.796312 TCCGACGAATTTTCAGCTGC 59.204 50.000 9.47 0.00 0.00 5.25
4686 4994 9.490379 ACTCTGTTTCTACTGTATTCGAATTTT 57.510 29.630 17.19 0.00 0.00 1.82
4728 5050 1.068741 ACGATGGGAGAAGGCGTATTC 59.931 52.381 0.00 0.00 32.94 1.75
4749 5072 1.471684 CTCGTGTACGTTAAGCCCTCT 59.528 52.381 0.00 0.00 40.80 3.69
4759 5082 2.082140 TAAGCCCTCTATGAAGCGGA 57.918 50.000 0.00 0.00 28.03 5.54
4849 5173 2.835895 GGAGACCTCCCGCTCTCC 60.836 72.222 4.72 2.01 44.59 3.71
4850 5174 2.835895 GAGACCTCCCGCTCTCCC 60.836 72.222 0.00 0.00 0.00 4.30
4969 5296 3.257561 CCTCTCGCGCATTCCACG 61.258 66.667 8.75 0.00 0.00 4.94
5016 5346 2.202756 CCTCGCGAACCCTAGCAC 60.203 66.667 11.33 0.00 0.00 4.40
5324 5654 2.959372 CGGGAGATATGCGGCGTA 59.041 61.111 9.37 3.65 0.00 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.667370 TGTGTAAACAAAGAGTATGCATGTG 58.333 36.000 10.16 0.43 0.00 3.21
2 3 8.668353 ACTATGTGTAAACAAAGAGTATGCATG 58.332 33.333 10.16 0.00 34.16 4.06
6 7 7.957484 GTGCACTATGTGTAAACAAAGAGTATG 59.043 37.037 10.32 0.00 33.68 2.39
7 8 7.148639 CGTGCACTATGTGTAAACAAAGAGTAT 60.149 37.037 16.19 0.00 33.68 2.12
8 9 6.144886 CGTGCACTATGTGTAAACAAAGAGTA 59.855 38.462 16.19 0.00 33.68 2.59
9 10 5.050363 CGTGCACTATGTGTAAACAAAGAGT 60.050 40.000 16.19 0.00 36.16 3.24
10 11 5.050363 ACGTGCACTATGTGTAAACAAAGAG 60.050 40.000 16.19 0.00 35.75 2.85
11 12 4.812091 ACGTGCACTATGTGTAAACAAAGA 59.188 37.500 16.19 0.00 35.75 2.52
12 13 5.090652 ACGTGCACTATGTGTAAACAAAG 57.909 39.130 16.19 0.00 35.75 2.77
13 14 6.424207 TCATACGTGCACTATGTGTAAACAAA 59.576 34.615 23.66 8.88 35.75 2.83
14 15 5.927115 TCATACGTGCACTATGTGTAAACAA 59.073 36.000 23.66 9.35 35.75 2.83
15 16 5.471257 TCATACGTGCACTATGTGTAAACA 58.529 37.500 23.66 0.00 35.75 2.83
16 17 6.397831 TTCATACGTGCACTATGTGTAAAC 57.602 37.500 23.66 0.00 35.75 2.01
17 18 6.400197 CGTTTCATACGTGCACTATGTGTAAA 60.400 38.462 23.66 17.78 45.14 2.01
18 19 5.061187 CGTTTCATACGTGCACTATGTGTAA 59.939 40.000 23.66 14.76 45.14 2.41
19 20 4.559643 CGTTTCATACGTGCACTATGTGTA 59.440 41.667 23.66 15.92 45.14 2.90
20 21 3.366724 CGTTTCATACGTGCACTATGTGT 59.633 43.478 23.66 14.62 45.14 3.72
21 22 3.911510 CGTTTCATACGTGCACTATGTG 58.088 45.455 23.66 17.00 45.14 3.21
54 55 7.436118 TGTTCAAATCAAGAGCTGCTATTTTT 58.564 30.769 6.82 3.95 0.00 1.94
55 56 6.985117 TGTTCAAATCAAGAGCTGCTATTTT 58.015 32.000 6.82 0.00 0.00 1.82
56 57 6.579666 TGTTCAAATCAAGAGCTGCTATTT 57.420 33.333 6.82 4.61 0.00 1.40
57 58 6.579666 TTGTTCAAATCAAGAGCTGCTATT 57.420 33.333 0.15 1.87 0.00 1.73
58 59 6.770746 ATTGTTCAAATCAAGAGCTGCTAT 57.229 33.333 0.15 0.00 0.00 2.97
59 60 6.579666 AATTGTTCAAATCAAGAGCTGCTA 57.420 33.333 0.15 0.00 0.00 3.49
60 61 5.464030 AATTGTTCAAATCAAGAGCTGCT 57.536 34.783 0.00 0.00 0.00 4.24
61 62 6.423001 AGAAAATTGTTCAAATCAAGAGCTGC 59.577 34.615 0.00 0.00 0.00 5.25
62 63 7.941795 AGAAAATTGTTCAAATCAAGAGCTG 57.058 32.000 0.00 0.00 0.00 4.24
63 64 8.199449 TGAAGAAAATTGTTCAAATCAAGAGCT 58.801 29.630 3.51 0.00 37.49 4.09
64 65 8.356533 TGAAGAAAATTGTTCAAATCAAGAGC 57.643 30.769 3.51 0.00 37.49 4.09
103 104 9.859427 TGCGATGAGAATTTGAAGATTAATTTT 57.141 25.926 0.00 0.00 0.00 1.82
104 105 9.859427 TTGCGATGAGAATTTGAAGATTAATTT 57.141 25.926 0.00 0.00 0.00 1.82
105 106 9.294030 GTTGCGATGAGAATTTGAAGATTAATT 57.706 29.630 0.00 0.00 0.00 1.40
106 107 7.641411 CGTTGCGATGAGAATTTGAAGATTAAT 59.359 33.333 0.00 0.00 0.00 1.40
107 108 6.960992 CGTTGCGATGAGAATTTGAAGATTAA 59.039 34.615 0.00 0.00 0.00 1.40
108 109 6.477742 CGTTGCGATGAGAATTTGAAGATTA 58.522 36.000 0.00 0.00 0.00 1.75
109 110 5.327091 CGTTGCGATGAGAATTTGAAGATT 58.673 37.500 0.00 0.00 0.00 2.40
110 111 4.728882 GCGTTGCGATGAGAATTTGAAGAT 60.729 41.667 0.00 0.00 0.00 2.40
111 112 3.424829 GCGTTGCGATGAGAATTTGAAGA 60.425 43.478 0.00 0.00 0.00 2.87
112 113 2.842485 GCGTTGCGATGAGAATTTGAAG 59.158 45.455 0.00 0.00 0.00 3.02
113 114 2.414029 GGCGTTGCGATGAGAATTTGAA 60.414 45.455 0.00 0.00 0.00 2.69
114 115 1.130373 GGCGTTGCGATGAGAATTTGA 59.870 47.619 0.00 0.00 0.00 2.69
115 116 1.538276 GGCGTTGCGATGAGAATTTG 58.462 50.000 0.00 0.00 0.00 2.32
116 117 0.451783 GGGCGTTGCGATGAGAATTT 59.548 50.000 0.00 0.00 0.00 1.82
117 118 1.705337 CGGGCGTTGCGATGAGAATT 61.705 55.000 0.00 0.00 0.00 2.17
118 119 2.173669 CGGGCGTTGCGATGAGAAT 61.174 57.895 0.00 0.00 0.00 2.40
119 120 2.813474 CGGGCGTTGCGATGAGAA 60.813 61.111 0.00 0.00 0.00 2.87
120 121 4.812476 CCGGGCGTTGCGATGAGA 62.812 66.667 0.00 0.00 0.00 3.27
124 125 4.708386 TTTCCCGGGCGTTGCGAT 62.708 61.111 18.49 0.00 0.00 4.58
125 126 4.931633 TTTTCCCGGGCGTTGCGA 62.932 61.111 18.49 0.00 0.00 5.10
126 127 3.677099 GATTTTCCCGGGCGTTGCG 62.677 63.158 18.49 0.00 0.00 4.85
127 128 2.180769 GATTTTCCCGGGCGTTGC 59.819 61.111 18.49 0.40 0.00 4.17
128 129 1.211709 GTGATTTTCCCGGGCGTTG 59.788 57.895 18.49 0.00 0.00 4.10
129 130 1.974875 GGTGATTTTCCCGGGCGTT 60.975 57.895 18.49 0.00 0.00 4.84
130 131 1.555477 TAGGTGATTTTCCCGGGCGT 61.555 55.000 18.49 3.80 0.00 5.68
131 132 0.814010 CTAGGTGATTTTCCCGGGCG 60.814 60.000 18.49 0.00 0.00 6.13
132 133 0.255033 ACTAGGTGATTTTCCCGGGC 59.745 55.000 18.49 0.73 0.00 6.13
133 134 2.801077 AACTAGGTGATTTTCCCGGG 57.199 50.000 16.85 16.85 0.00 5.73
134 135 6.769134 ATAAAAACTAGGTGATTTTCCCGG 57.231 37.500 0.00 0.00 33.62 5.73
135 136 7.415229 GCTATAAAAACTAGGTGATTTTCCCG 58.585 38.462 0.00 0.00 33.62 5.14
136 137 7.066645 ACGCTATAAAAACTAGGTGATTTTCCC 59.933 37.037 0.00 0.00 33.62 3.97
137 138 7.982224 ACGCTATAAAAACTAGGTGATTTTCC 58.018 34.615 0.00 0.00 33.62 3.13
138 139 8.121086 GGACGCTATAAAAACTAGGTGATTTTC 58.879 37.037 0.00 0.00 33.62 2.29
139 140 7.201582 CGGACGCTATAAAAACTAGGTGATTTT 60.202 37.037 0.00 0.00 35.36 1.82
140 141 6.257193 CGGACGCTATAAAAACTAGGTGATTT 59.743 38.462 0.00 0.00 0.00 2.17
141 142 5.751990 CGGACGCTATAAAAACTAGGTGATT 59.248 40.000 0.00 0.00 0.00 2.57
142 143 5.163478 ACGGACGCTATAAAAACTAGGTGAT 60.163 40.000 0.00 0.00 0.00 3.06
143 144 4.158394 ACGGACGCTATAAAAACTAGGTGA 59.842 41.667 0.00 0.00 0.00 4.02
144 145 4.266976 CACGGACGCTATAAAAACTAGGTG 59.733 45.833 0.00 0.00 0.00 4.00
145 146 4.427312 CACGGACGCTATAAAAACTAGGT 58.573 43.478 0.00 0.00 0.00 3.08
146 147 3.244579 GCACGGACGCTATAAAAACTAGG 59.755 47.826 0.00 0.00 0.00 3.02
147 148 3.861113 TGCACGGACGCTATAAAAACTAG 59.139 43.478 0.00 0.00 0.00 2.57
148 149 3.847542 TGCACGGACGCTATAAAAACTA 58.152 40.909 0.00 0.00 0.00 2.24
149 150 2.690786 TGCACGGACGCTATAAAAACT 58.309 42.857 0.00 0.00 0.00 2.66
150 151 3.668596 ATGCACGGACGCTATAAAAAC 57.331 42.857 0.00 0.00 0.00 2.43
151 152 3.685272 TCAATGCACGGACGCTATAAAAA 59.315 39.130 0.00 0.00 0.00 1.94
152 153 3.263261 TCAATGCACGGACGCTATAAAA 58.737 40.909 0.00 0.00 0.00 1.52
153 154 2.894902 TCAATGCACGGACGCTATAAA 58.105 42.857 0.00 0.00 0.00 1.40
154 155 2.588027 TCAATGCACGGACGCTATAA 57.412 45.000 0.00 0.00 0.00 0.98
155 156 2.100087 TCTTCAATGCACGGACGCTATA 59.900 45.455 0.00 0.00 0.00 1.31
156 157 1.134818 TCTTCAATGCACGGACGCTAT 60.135 47.619 0.00 0.00 0.00 2.97
157 158 0.245266 TCTTCAATGCACGGACGCTA 59.755 50.000 0.00 0.00 0.00 4.26
158 159 0.391661 ATCTTCAATGCACGGACGCT 60.392 50.000 0.00 0.00 0.00 5.07
159 160 0.247814 CATCTTCAATGCACGGACGC 60.248 55.000 0.00 0.00 0.00 5.19
160 161 0.247814 GCATCTTCAATGCACGGACG 60.248 55.000 5.18 0.00 44.00 4.79
161 162 0.099436 GGCATCTTCAATGCACGGAC 59.901 55.000 11.69 0.00 46.21 4.79
162 163 1.031571 GGGCATCTTCAATGCACGGA 61.032 55.000 11.69 0.00 46.21 4.69
163 164 1.434696 GGGCATCTTCAATGCACGG 59.565 57.895 11.69 0.00 46.21 4.94
166 167 3.650281 TCTTAGGGCATCTTCAATGCA 57.350 42.857 11.69 0.00 46.21 3.96
167 168 5.163478 ACAAATCTTAGGGCATCTTCAATGC 60.163 40.000 1.40 1.40 43.85 3.56
168 169 6.461110 ACAAATCTTAGGGCATCTTCAATG 57.539 37.500 0.00 0.00 0.00 2.82
169 170 6.664816 TCAACAAATCTTAGGGCATCTTCAAT 59.335 34.615 0.00 0.00 0.00 2.57
170 171 6.009589 TCAACAAATCTTAGGGCATCTTCAA 58.990 36.000 0.00 0.00 0.00 2.69
171 172 5.569355 TCAACAAATCTTAGGGCATCTTCA 58.431 37.500 0.00 0.00 0.00 3.02
172 173 6.515272 TTCAACAAATCTTAGGGCATCTTC 57.485 37.500 0.00 0.00 0.00 2.87
173 174 6.267471 TGTTTCAACAAATCTTAGGGCATCTT 59.733 34.615 0.00 0.00 35.67 2.40
174 175 5.774690 TGTTTCAACAAATCTTAGGGCATCT 59.225 36.000 0.00 0.00 35.67 2.90
175 176 6.024552 TGTTTCAACAAATCTTAGGGCATC 57.975 37.500 0.00 0.00 35.67 3.91
176 177 6.418057 TTGTTTCAACAAATCTTAGGGCAT 57.582 33.333 2.53 0.00 45.17 4.40
177 178 5.860941 TTGTTTCAACAAATCTTAGGGCA 57.139 34.783 2.53 0.00 45.17 5.36
188 189 2.615869 GCAACCTGCTTGTTTCAACAA 58.384 42.857 5.05 5.05 45.41 2.83
189 190 2.292103 GCAACCTGCTTGTTTCAACA 57.708 45.000 0.00 0.00 40.96 3.33
200 201 2.338785 GCCCTCTGAAGCAACCTGC 61.339 63.158 0.00 0.00 45.46 4.85
201 202 2.037136 CGCCCTCTGAAGCAACCTG 61.037 63.158 0.00 0.00 0.00 4.00
202 203 1.768684 TTCGCCCTCTGAAGCAACCT 61.769 55.000 0.00 0.00 0.00 3.50
203 204 1.302511 TTCGCCCTCTGAAGCAACC 60.303 57.895 0.00 0.00 0.00 3.77
204 205 0.603975 AGTTCGCCCTCTGAAGCAAC 60.604 55.000 0.00 4.31 0.00 4.17
205 206 0.973632 TAGTTCGCCCTCTGAAGCAA 59.026 50.000 0.00 0.00 0.00 3.91
206 207 0.246635 GTAGTTCGCCCTCTGAAGCA 59.753 55.000 0.00 0.00 0.00 3.91
207 208 0.246635 TGTAGTTCGCCCTCTGAAGC 59.753 55.000 0.00 0.00 0.00 3.86
208 209 2.288825 TGTTGTAGTTCGCCCTCTGAAG 60.289 50.000 0.00 0.00 0.00 3.02
209 210 1.689813 TGTTGTAGTTCGCCCTCTGAA 59.310 47.619 0.00 0.00 0.00 3.02
210 211 1.334160 TGTTGTAGTTCGCCCTCTGA 58.666 50.000 0.00 0.00 0.00 3.27
211 212 2.163818 TTGTTGTAGTTCGCCCTCTG 57.836 50.000 0.00 0.00 0.00 3.35
212 213 2.876550 GTTTTGTTGTAGTTCGCCCTCT 59.123 45.455 0.00 0.00 0.00 3.69
213 214 2.614983 TGTTTTGTTGTAGTTCGCCCTC 59.385 45.455 0.00 0.00 0.00 4.30
214 215 2.645802 TGTTTTGTTGTAGTTCGCCCT 58.354 42.857 0.00 0.00 0.00 5.19
215 216 3.636282 ATGTTTTGTTGTAGTTCGCCC 57.364 42.857 0.00 0.00 0.00 6.13
216 217 4.801516 ACAAATGTTTTGTTGTAGTTCGCC 59.198 37.500 0.00 0.00 36.22 5.54
217 218 5.942325 ACAAATGTTTTGTTGTAGTTCGC 57.058 34.783 0.00 0.00 36.22 4.70
226 227 6.150809 ACCATCTTTGCAACAAATGTTTTGTT 59.849 30.769 11.50 11.50 42.75 2.83
227 228 5.647225 ACCATCTTTGCAACAAATGTTTTGT 59.353 32.000 0.00 0.00 35.83 2.83
228 229 6.121613 ACCATCTTTGCAACAAATGTTTTG 57.878 33.333 0.00 0.00 35.83 2.44
229 230 6.756299 AACCATCTTTGCAACAAATGTTTT 57.244 29.167 0.00 0.00 35.83 2.43
230 231 7.011295 CACTAACCATCTTTGCAACAAATGTTT 59.989 33.333 0.00 0.98 35.83 2.83
231 232 6.479660 CACTAACCATCTTTGCAACAAATGTT 59.520 34.615 0.00 3.40 39.12 2.71
232 233 5.984926 CACTAACCATCTTTGCAACAAATGT 59.015 36.000 0.00 0.00 0.00 2.71
233 234 5.406175 CCACTAACCATCTTTGCAACAAATG 59.594 40.000 0.00 3.25 0.00 2.32
234 235 5.511202 CCCACTAACCATCTTTGCAACAAAT 60.511 40.000 0.00 0.00 0.00 2.32
235 236 4.202202 CCCACTAACCATCTTTGCAACAAA 60.202 41.667 0.00 0.00 0.00 2.83
236 237 3.320541 CCCACTAACCATCTTTGCAACAA 59.679 43.478 0.00 0.00 0.00 2.83
237 238 2.890311 CCCACTAACCATCTTTGCAACA 59.110 45.455 0.00 0.00 0.00 3.33
238 239 2.890945 ACCCACTAACCATCTTTGCAAC 59.109 45.455 0.00 0.00 0.00 4.17
239 240 3.237268 ACCCACTAACCATCTTTGCAA 57.763 42.857 0.00 0.00 0.00 4.08
240 241 2.969821 ACCCACTAACCATCTTTGCA 57.030 45.000 0.00 0.00 0.00 4.08
241 242 4.216411 TCTACCCACTAACCATCTTTGC 57.784 45.455 0.00 0.00 0.00 3.68
242 243 5.989477 TGATCTACCCACTAACCATCTTTG 58.011 41.667 0.00 0.00 0.00 2.77
243 244 6.636454 TTGATCTACCCACTAACCATCTTT 57.364 37.500 0.00 0.00 0.00 2.52
244 245 6.012858 TGTTTGATCTACCCACTAACCATCTT 60.013 38.462 0.00 0.00 0.00 2.40
245 246 5.487488 TGTTTGATCTACCCACTAACCATCT 59.513 40.000 0.00 0.00 0.00 2.90
246 247 5.741011 TGTTTGATCTACCCACTAACCATC 58.259 41.667 0.00 0.00 0.00 3.51
247 248 5.745227 CTGTTTGATCTACCCACTAACCAT 58.255 41.667 0.00 0.00 0.00 3.55
248 249 4.564821 GCTGTTTGATCTACCCACTAACCA 60.565 45.833 0.00 0.00 0.00 3.67
249 250 3.939592 GCTGTTTGATCTACCCACTAACC 59.060 47.826 0.00 0.00 0.00 2.85
250 251 3.939592 GGCTGTTTGATCTACCCACTAAC 59.060 47.826 0.00 0.00 0.00 2.34
251 252 3.585289 TGGCTGTTTGATCTACCCACTAA 59.415 43.478 0.00 0.00 0.00 2.24
252 253 3.178046 TGGCTGTTTGATCTACCCACTA 58.822 45.455 0.00 0.00 0.00 2.74
253 254 1.985159 TGGCTGTTTGATCTACCCACT 59.015 47.619 0.00 0.00 0.00 4.00
254 255 2.489938 TGGCTGTTTGATCTACCCAC 57.510 50.000 0.00 0.00 0.00 4.61
255 256 2.846206 AGATGGCTGTTTGATCTACCCA 59.154 45.455 0.00 0.00 0.00 4.51
256 257 3.209410 CAGATGGCTGTTTGATCTACCC 58.791 50.000 0.00 0.00 37.37 3.69
257 258 2.615912 GCAGATGGCTGTTTGATCTACC 59.384 50.000 0.00 0.00 44.17 3.18
258 259 3.273434 TGCAGATGGCTGTTTGATCTAC 58.727 45.455 0.00 0.00 44.17 2.59
259 260 3.538591 CTGCAGATGGCTGTTTGATCTA 58.461 45.455 8.42 0.00 44.17 1.98
260 261 2.366533 CTGCAGATGGCTGTTTGATCT 58.633 47.619 8.42 0.00 44.17 2.75
261 262 1.202268 GCTGCAGATGGCTGTTTGATC 60.202 52.381 20.43 0.00 44.17 2.92
262 263 0.815734 GCTGCAGATGGCTGTTTGAT 59.184 50.000 20.43 0.00 44.17 2.57
263 264 0.251033 AGCTGCAGATGGCTGTTTGA 60.251 50.000 20.43 0.00 44.17 2.69
264 265 0.170561 GAGCTGCAGATGGCTGTTTG 59.829 55.000 20.43 0.00 44.17 2.93
265 266 0.964358 GGAGCTGCAGATGGCTGTTT 60.964 55.000 20.43 0.00 44.17 2.83
266 267 1.378250 GGAGCTGCAGATGGCTGTT 60.378 57.895 20.43 0.00 44.17 3.16
267 268 1.923006 ATGGAGCTGCAGATGGCTGT 61.923 55.000 20.43 0.00 44.17 4.40
268 269 1.152943 ATGGAGCTGCAGATGGCTG 60.153 57.895 20.43 0.00 45.15 4.85
269 270 1.148723 GATGGAGCTGCAGATGGCT 59.851 57.895 20.43 8.13 45.15 4.75
270 271 1.897615 GGATGGAGCTGCAGATGGC 60.898 63.158 20.43 1.85 45.13 4.40
271 272 0.106868 TTGGATGGAGCTGCAGATGG 60.107 55.000 20.43 0.00 0.00 3.51
272 273 1.609072 CATTGGATGGAGCTGCAGATG 59.391 52.381 20.43 10.98 0.00 2.90
273 274 1.982660 CATTGGATGGAGCTGCAGAT 58.017 50.000 20.43 12.64 0.00 2.90
274 275 3.489391 CATTGGATGGAGCTGCAGA 57.511 52.632 20.43 0.00 0.00 4.26
284 285 2.131709 CCTGCCTGGCCATTGGATG 61.132 63.158 17.53 6.05 0.00 3.51
285 286 2.281091 CCTGCCTGGCCATTGGAT 59.719 61.111 17.53 0.00 0.00 3.41
286 287 3.267233 ACCTGCCTGGCCATTGGA 61.267 61.111 17.53 5.85 40.22 3.53
287 288 2.866523 ATCACCTGCCTGGCCATTGG 62.867 60.000 17.53 14.86 40.22 3.16
288 289 1.380785 ATCACCTGCCTGGCCATTG 60.381 57.895 17.53 10.06 40.22 2.82
289 290 1.076485 GATCACCTGCCTGGCCATT 60.076 57.895 17.53 0.00 40.22 3.16
290 291 2.599597 GATCACCTGCCTGGCCAT 59.400 61.111 17.53 0.00 40.22 4.40
291 292 4.100084 CGATCACCTGCCTGGCCA 62.100 66.667 17.53 4.71 40.22 5.36
292 293 3.112205 ATCGATCACCTGCCTGGCC 62.112 63.158 17.53 0.00 40.22 5.36
293 294 1.596477 GATCGATCACCTGCCTGGC 60.596 63.158 20.52 12.87 40.22 4.85
294 295 0.467384 AAGATCGATCACCTGCCTGG 59.533 55.000 26.47 0.00 42.93 4.45
295 296 2.322355 AAAGATCGATCACCTGCCTG 57.678 50.000 26.47 0.00 0.00 4.85
296 297 3.054802 AGAAAAAGATCGATCACCTGCCT 60.055 43.478 26.47 12.93 0.00 4.75
297 298 3.064545 CAGAAAAAGATCGATCACCTGCC 59.935 47.826 26.47 11.03 0.00 4.85
298 299 3.686726 ACAGAAAAAGATCGATCACCTGC 59.313 43.478 26.47 12.74 0.00 4.85
299 300 5.869753 AACAGAAAAAGATCGATCACCTG 57.130 39.130 26.47 22.80 0.00 4.00
300 301 6.763610 GGATAACAGAAAAAGATCGATCACCT 59.236 38.462 26.47 12.43 0.00 4.00
301 302 6.292381 CGGATAACAGAAAAAGATCGATCACC 60.292 42.308 26.47 10.52 0.00 4.02
302 303 6.641062 CGGATAACAGAAAAAGATCGATCAC 58.359 40.000 26.47 12.04 0.00 3.06
303 304 5.234329 GCGGATAACAGAAAAAGATCGATCA 59.766 40.000 26.47 2.73 0.00 2.92
304 305 5.333416 GGCGGATAACAGAAAAAGATCGATC 60.333 44.000 17.91 17.91 0.00 3.69
305 306 4.511826 GGCGGATAACAGAAAAAGATCGAT 59.488 41.667 0.00 0.00 0.00 3.59
306 307 3.869246 GGCGGATAACAGAAAAAGATCGA 59.131 43.478 0.00 0.00 0.00 3.59
307 308 3.302480 CGGCGGATAACAGAAAAAGATCG 60.302 47.826 0.00 0.00 0.00 3.69
308 309 3.002348 CCGGCGGATAACAGAAAAAGATC 59.998 47.826 24.41 0.00 0.00 2.75
309 310 2.943033 CCGGCGGATAACAGAAAAAGAT 59.057 45.455 24.41 0.00 0.00 2.40
310 311 2.352388 CCGGCGGATAACAGAAAAAGA 58.648 47.619 24.41 0.00 0.00 2.52
311 312 1.202143 GCCGGCGGATAACAGAAAAAG 60.202 52.381 33.44 0.00 0.00 2.27
312 313 0.806241 GCCGGCGGATAACAGAAAAA 59.194 50.000 33.44 0.00 0.00 1.94
313 314 0.321741 TGCCGGCGGATAACAGAAAA 60.322 50.000 33.44 0.00 0.00 2.29
314 315 0.742990 CTGCCGGCGGATAACAGAAA 60.743 55.000 32.31 1.12 0.00 2.52
315 316 1.153449 CTGCCGGCGGATAACAGAA 60.153 57.895 32.31 1.75 0.00 3.02
316 317 2.055633 TCTGCCGGCGGATAACAGA 61.056 57.895 34.14 27.77 35.11 3.41
317 318 1.883084 GTCTGCCGGCGGATAACAG 60.883 63.158 38.99 25.91 33.49 3.16
318 319 2.185867 GTCTGCCGGCGGATAACA 59.814 61.111 38.99 15.82 33.49 2.41
319 320 2.960129 CGTCTGCCGGCGGATAAC 60.960 66.667 38.99 25.94 33.49 1.89
320 321 4.884257 GCGTCTGCCGGCGGATAA 62.884 66.667 38.99 16.66 36.94 1.75
327 328 4.415332 ACACTACGCGTCTGCCGG 62.415 66.667 18.63 0.00 38.08 6.13
328 329 2.874780 GACACTACGCGTCTGCCG 60.875 66.667 18.63 7.79 38.08 5.69
329 330 2.874780 CGACACTACGCGTCTGCC 60.875 66.667 18.63 3.75 38.08 4.85
337 338 4.613944 TGATAATTTAGGGCGACACTACG 58.386 43.478 0.00 0.00 0.00 3.51
338 339 5.107065 GCATGATAATTTAGGGCGACACTAC 60.107 44.000 0.00 0.00 0.00 2.73
339 340 4.994852 GCATGATAATTTAGGGCGACACTA 59.005 41.667 0.00 0.00 0.00 2.74
340 341 3.815401 GCATGATAATTTAGGGCGACACT 59.185 43.478 0.00 0.00 0.00 3.55
341 342 3.563808 TGCATGATAATTTAGGGCGACAC 59.436 43.478 0.00 0.00 0.00 3.67
342 343 3.814625 TGCATGATAATTTAGGGCGACA 58.185 40.909 0.00 0.00 0.00 4.35
343 344 4.829064 TTGCATGATAATTTAGGGCGAC 57.171 40.909 0.00 0.00 0.00 5.19
344 345 5.587289 GTTTTGCATGATAATTTAGGGCGA 58.413 37.500 0.00 0.00 0.00 5.54
345 346 4.440758 CGTTTTGCATGATAATTTAGGGCG 59.559 41.667 0.00 0.00 0.00 6.13
346 347 5.348164 ACGTTTTGCATGATAATTTAGGGC 58.652 37.500 0.00 0.00 0.00 5.19
347 348 7.543868 TCAAACGTTTTGCATGATAATTTAGGG 59.456 33.333 11.66 0.00 0.00 3.53
348 349 8.459521 TCAAACGTTTTGCATGATAATTTAGG 57.540 30.769 11.66 0.00 0.00 2.69
351 352 9.596677 CAAATCAAACGTTTTGCATGATAATTT 57.403 25.926 11.66 1.46 30.90 1.82
352 353 8.772705 ACAAATCAAACGTTTTGCATGATAATT 58.227 25.926 11.66 1.35 36.51 1.40
353 354 8.309163 ACAAATCAAACGTTTTGCATGATAAT 57.691 26.923 11.66 2.07 36.51 1.28
354 355 7.436376 TGACAAATCAAACGTTTTGCATGATAA 59.564 29.630 11.66 0.00 36.51 1.75
355 356 6.920210 TGACAAATCAAACGTTTTGCATGATA 59.080 30.769 11.66 0.00 36.51 2.15
356 357 5.752472 TGACAAATCAAACGTTTTGCATGAT 59.248 32.000 11.66 8.69 36.51 2.45
362 363 6.810888 AGACATGACAAATCAAACGTTTTG 57.189 33.333 11.66 9.80 38.69 2.44
366 367 8.188139 AGTTTTTAGACATGACAAATCAAACGT 58.812 29.630 0.00 0.00 38.69 3.99
373 374 7.920682 GTGGTCAAGTTTTTAGACATGACAAAT 59.079 33.333 13.23 0.00 45.27 2.32
417 418 7.104939 CCCAAATGCTTAATCCATTTCTTCAA 58.895 34.615 9.87 0.00 40.00 2.69
419 420 6.643388 ACCCAAATGCTTAATCCATTTCTTC 58.357 36.000 9.87 0.00 40.00 2.87
433 434 0.968405 ATTCACGCAACCCAAATGCT 59.032 45.000 0.00 0.00 41.64 3.79
434 435 1.070038 CATTCACGCAACCCAAATGC 58.930 50.000 0.00 0.00 40.41 3.56
446 451 4.444024 CGTGCGCCCACATTCACG 62.444 66.667 4.18 0.64 44.62 4.35
542 548 4.740822 ATTCCTGTGCGGGTGGGC 62.741 66.667 0.00 0.00 0.00 5.36
543 549 2.438434 GATTCCTGTGCGGGTGGG 60.438 66.667 0.00 0.00 0.00 4.61
554 560 7.500629 AAAAGCAAATAAATGGGAGATTCCT 57.499 32.000 0.00 0.00 36.57 3.36
580 586 7.524717 AGATTCTTTTCCATTCCGAGAAAAA 57.475 32.000 0.00 0.00 40.44 1.94
732 742 1.537889 TCCAGTGGACGGGGTTCAT 60.538 57.895 8.12 0.00 0.00 2.57
733 743 2.122769 TCCAGTGGACGGGGTTCA 60.123 61.111 8.12 0.00 0.00 3.18
765 775 2.198304 GATTCTTGTGGGCTCCGGGT 62.198 60.000 0.00 0.00 0.00 5.28
771 781 1.675641 GCGTGGATTCTTGTGGGCT 60.676 57.895 0.00 0.00 0.00 5.19
779 789 1.611673 CCCTGTTTGAGCGTGGATTCT 60.612 52.381 0.00 0.00 0.00 2.40
786 796 1.071471 CTGGACCCTGTTTGAGCGT 59.929 57.895 0.00 0.00 0.00 5.07
787 797 1.071471 ACTGGACCCTGTTTGAGCG 59.929 57.895 0.00 0.00 0.00 5.03
792 802 1.152756 GGTGCACTGGACCCTGTTT 60.153 57.895 17.98 0.00 0.00 2.83
793 803 2.515901 GGTGCACTGGACCCTGTT 59.484 61.111 17.98 0.00 0.00 3.16
794 804 3.941188 CGGTGCACTGGACCCTGT 61.941 66.667 18.43 0.00 0.00 4.00
952 1006 1.326213 CCTGATGGCGAGAGTCCTGT 61.326 60.000 0.00 0.00 32.11 4.00
953 1007 1.440893 CCTGATGGCGAGAGTCCTG 59.559 63.158 0.00 0.00 32.11 3.86
954 1008 1.760086 CCCTGATGGCGAGAGTCCT 60.760 63.158 0.00 0.00 32.11 3.85
955 1009 2.801631 CCCCTGATGGCGAGAGTCC 61.802 68.421 0.00 0.00 32.11 3.85
957 1011 1.760086 CTCCCCTGATGGCGAGAGT 60.760 63.158 0.00 0.00 34.88 3.24
958 1012 1.456518 TCTCCCCTGATGGCGAGAG 60.457 63.158 0.00 0.00 36.26 3.20
959 1013 1.456518 CTCTCCCCTGATGGCGAGA 60.457 63.158 0.00 0.00 37.81 4.04
960 1014 0.831288 ATCTCTCCCCTGATGGCGAG 60.831 60.000 0.00 0.00 34.48 5.03
961 1015 0.482887 TATCTCTCCCCTGATGGCGA 59.517 55.000 0.00 0.00 0.00 5.54
962 1016 0.894141 CTATCTCTCCCCTGATGGCG 59.106 60.000 0.00 0.00 0.00 5.69
963 1017 2.178580 CTCTATCTCTCCCCTGATGGC 58.821 57.143 0.00 0.00 0.00 4.40
964 1018 3.564133 CCTCTCTATCTCTCCCCTGATGG 60.564 56.522 0.00 0.00 0.00 3.51
965 1019 3.564133 CCCTCTCTATCTCTCCCCTGATG 60.564 56.522 0.00 0.00 0.00 3.07
966 1020 2.654385 CCCTCTCTATCTCTCCCCTGAT 59.346 54.545 0.00 0.00 0.00 2.90
967 1021 2.069775 CCCTCTCTATCTCTCCCCTGA 58.930 57.143 0.00 0.00 0.00 3.86
968 1022 2.041620 CTCCCTCTCTATCTCTCCCCTG 59.958 59.091 0.00 0.00 0.00 4.45
969 1023 2.358258 CTCCCTCTCTATCTCTCCCCT 58.642 57.143 0.00 0.00 0.00 4.79
970 1024 1.357761 CCTCCCTCTCTATCTCTCCCC 59.642 61.905 0.00 0.00 0.00 4.81
971 1025 1.272480 GCCTCCCTCTCTATCTCTCCC 60.272 61.905 0.00 0.00 0.00 4.30
972 1026 1.613255 CGCCTCCCTCTCTATCTCTCC 60.613 61.905 0.00 0.00 0.00 3.71
973 1027 1.349688 TCGCCTCCCTCTCTATCTCTC 59.650 57.143 0.00 0.00 0.00 3.20
974 1028 1.073284 GTCGCCTCCCTCTCTATCTCT 59.927 57.143 0.00 0.00 0.00 3.10
975 1029 1.530323 GTCGCCTCCCTCTCTATCTC 58.470 60.000 0.00 0.00 0.00 2.75
976 1030 0.250553 CGTCGCCTCCCTCTCTATCT 60.251 60.000 0.00 0.00 0.00 1.98
977 1031 0.250381 TCGTCGCCTCCCTCTCTATC 60.250 60.000 0.00 0.00 0.00 2.08
978 1032 0.250553 CTCGTCGCCTCCCTCTCTAT 60.251 60.000 0.00 0.00 0.00 1.98
979 1033 1.146485 CTCGTCGCCTCCCTCTCTA 59.854 63.158 0.00 0.00 0.00 2.43
980 1034 2.124487 CTCGTCGCCTCCCTCTCT 60.124 66.667 0.00 0.00 0.00 3.10
1134 1209 2.363276 TCTCCGCCACCGTACCAT 60.363 61.111 0.00 0.00 0.00 3.55
1136 1211 3.066814 AGTCTCCGCCACCGTACC 61.067 66.667 0.00 0.00 0.00 3.34
1137 1212 1.870055 TTCAGTCTCCGCCACCGTAC 61.870 60.000 0.00 0.00 0.00 3.67
1138 1213 0.968901 ATTCAGTCTCCGCCACCGTA 60.969 55.000 0.00 0.00 0.00 4.02
1139 1214 2.283529 ATTCAGTCTCCGCCACCGT 61.284 57.895 0.00 0.00 0.00 4.83
1156 1231 2.334653 CGCGCCACAAAACACCAT 59.665 55.556 0.00 0.00 0.00 3.55
1157 1232 4.560856 GCGCGCCACAAAACACCA 62.561 61.111 23.24 0.00 0.00 4.17
1175 1256 4.399395 CGCCCAGGCTCTGCAAGA 62.399 66.667 7.17 0.00 43.34 3.02
1289 1370 1.694525 GGAAGGGAGGGAGGAAGGG 60.695 68.421 0.00 0.00 0.00 3.95
1290 1371 0.327964 ATGGAAGGGAGGGAGGAAGG 60.328 60.000 0.00 0.00 0.00 3.46
1291 1372 1.213926 CAATGGAAGGGAGGGAGGAAG 59.786 57.143 0.00 0.00 0.00 3.46
1292 1373 1.298953 CAATGGAAGGGAGGGAGGAA 58.701 55.000 0.00 0.00 0.00 3.36
1293 1374 1.281925 GCAATGGAAGGGAGGGAGGA 61.282 60.000 0.00 0.00 0.00 3.71
1294 1375 1.228510 GCAATGGAAGGGAGGGAGG 59.771 63.158 0.00 0.00 0.00 4.30
1295 1376 1.153086 CGCAATGGAAGGGAGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
1296 1377 2.998097 CGCAATGGAAGGGAGGGA 59.002 61.111 0.00 0.00 0.00 4.20
1343 1436 1.589716 GATATGCATGGAAGCGGGGC 61.590 60.000 10.16 0.00 37.31 5.80
1356 1449 2.388121 GCGCATTTTCACCAGATATGC 58.612 47.619 0.30 0.00 38.12 3.14
1368 1461 3.347958 TGACTTTTTCTCGCGCATTTT 57.652 38.095 8.75 0.00 0.00 1.82
1411 1515 0.535780 CCTCCACTGCACACACACAT 60.536 55.000 0.00 0.00 0.00 3.21
1531 1645 0.457853 TGGCTTACACGTCGATGAGC 60.458 55.000 12.58 9.53 0.00 4.26
1620 1767 2.301902 GATGCGCGTGCCTGAAAGAG 62.302 60.000 19.87 0.00 41.78 2.85
1745 1898 0.978146 AGATACAGGCGGAGGTGCTT 60.978 55.000 0.00 0.00 34.52 3.91
1751 1904 1.107114 ACAGACAGATACAGGCGGAG 58.893 55.000 0.00 0.00 0.00 4.63
1790 1943 9.417561 AGTTACTGTACTTAGCATATCAGGTTA 57.582 33.333 0.00 0.00 0.00 2.85
1851 2004 3.084786 GGAAGAGCCAGTAATGTTGCTT 58.915 45.455 0.00 0.00 33.41 3.91
1853 2006 2.436417 TGGAAGAGCCAGTAATGTTGC 58.564 47.619 0.00 0.00 43.33 4.17
1875 2033 7.391620 ACCTCTAAATCAGTCGTAATCCAAAA 58.608 34.615 0.00 0.00 0.00 2.44
1897 2055 4.348863 GAGCATACATCTGATCCAACCT 57.651 45.455 0.00 0.00 0.00 3.50
1902 2060 4.103365 CTACGGAGCATACATCTGATCC 57.897 50.000 0.00 0.00 46.06 3.36
1920 2083 4.036144 GGAGGAATCAATTTGCAGAGCTAC 59.964 45.833 0.00 0.00 0.00 3.58
1922 2085 3.022406 GGAGGAATCAATTTGCAGAGCT 58.978 45.455 0.00 0.00 0.00 4.09
1962 2133 0.036765 GAGGCATGTCCACCAACGTA 60.037 55.000 8.58 0.00 37.29 3.57
1998 2169 5.860941 TGAGAGTTTCTTCAGAGACTGTT 57.139 39.130 4.78 0.00 39.28 3.16
2001 2172 6.097554 TGAGTTTGAGAGTTTCTTCAGAGACT 59.902 38.462 0.00 0.00 41.49 3.24
2057 2228 6.073331 CGTTATGGGCTAGTGTACTAGTACTC 60.073 46.154 28.56 25.20 45.85 2.59
2080 2315 1.672356 GGAGCAACCATGAGCACGT 60.672 57.895 0.00 0.00 38.79 4.49
2086 2321 1.792757 AAGGCTGGGAGCAACCATGA 61.793 55.000 0.00 0.00 44.75 3.07
2127 2371 3.499338 TGCATCCACCTGAAAATCAAGT 58.501 40.909 0.00 0.00 0.00 3.16
2135 2379 1.078918 CGAGCTGCATCCACCTGAA 60.079 57.895 1.02 0.00 0.00 3.02
2154 2398 7.233389 ACCGACATCAACATATAGCTTATCT 57.767 36.000 0.00 0.00 0.00 1.98
2197 2441 0.523072 ACATTGCTAGTTTGCTGCGG 59.477 50.000 0.00 0.00 0.00 5.69
2200 2444 6.073058 TGACTCTTAACATTGCTAGTTTGCTG 60.073 38.462 0.00 0.00 0.00 4.41
2201 2445 5.997746 TGACTCTTAACATTGCTAGTTTGCT 59.002 36.000 0.00 0.00 0.00 3.91
2295 2554 3.743521 TCAGAACTGGACATGAAACAGG 58.256 45.455 16.23 0.00 36.57 4.00
2305 2564 7.170658 GCAAGTCAGATATATTCAGAACTGGAC 59.829 40.741 1.93 0.00 0.00 4.02
2308 2567 8.659925 AAGCAAGTCAGATATATTCAGAACTG 57.340 34.615 0.00 0.00 0.00 3.16
2319 2578 9.491675 CATGAGAAGATAAAGCAAGTCAGATAT 57.508 33.333 0.00 0.00 0.00 1.63
2320 2579 8.481314 ACATGAGAAGATAAAGCAAGTCAGATA 58.519 33.333 0.00 0.00 0.00 1.98
2321 2580 7.337167 ACATGAGAAGATAAAGCAAGTCAGAT 58.663 34.615 0.00 0.00 0.00 2.90
2322 2581 6.705302 ACATGAGAAGATAAAGCAAGTCAGA 58.295 36.000 0.00 0.00 0.00 3.27
2334 2593 5.104109 CCCCAAAACCCTACATGAGAAGATA 60.104 44.000 0.00 0.00 0.00 1.98
2335 2594 4.325344 CCCCAAAACCCTACATGAGAAGAT 60.325 45.833 0.00 0.00 0.00 2.40
2342 2601 1.959989 GCCTCCCCAAAACCCTACATG 60.960 57.143 0.00 0.00 0.00 3.21
2345 2604 1.000019 GGCCTCCCCAAAACCCTAC 60.000 63.158 0.00 0.00 0.00 3.18
2404 2663 2.182827 AGCACTCCTGCATTCAGTAGA 58.817 47.619 0.00 0.00 46.97 2.59
2407 2666 1.209019 CCTAGCACTCCTGCATTCAGT 59.791 52.381 0.00 0.00 46.97 3.41
2410 2669 1.484240 AGTCCTAGCACTCCTGCATTC 59.516 52.381 0.00 0.00 46.97 2.67
2423 2682 6.591750 TGAGAAACTGACCTTAAGTCCTAG 57.408 41.667 0.97 0.00 45.68 3.02
2452 2714 4.713824 ACCAGAAATGATGAAGCATGTG 57.286 40.909 0.00 0.00 0.00 3.21
2487 2755 6.892456 AGAAAAGGAAAGAAGAAACAGAGGTT 59.108 34.615 0.00 0.00 39.43 3.50
2501 2772 8.822652 ATGTCAGCATTTTTAGAAAAGGAAAG 57.177 30.769 2.41 0.00 29.54 2.62
2504 2775 8.855110 TGTAATGTCAGCATTTTTAGAAAAGGA 58.145 29.630 2.41 0.00 42.19 3.36
2507 2778 9.474920 CCTTGTAATGTCAGCATTTTTAGAAAA 57.525 29.630 0.00 0.00 42.19 2.29
2513 2784 6.899393 TCTCCTTGTAATGTCAGCATTTTT 57.101 33.333 0.00 0.00 42.19 1.94
2590 2863 2.835156 TGTCATGGGGAAGTCGTTGATA 59.165 45.455 0.00 0.00 0.00 2.15
2641 2914 4.325119 AGCTAAATATGGCAGAGCTGATG 58.675 43.478 0.85 0.00 41.82 3.07
2642 2915 4.637387 AGCTAAATATGGCAGAGCTGAT 57.363 40.909 0.85 0.00 41.82 2.90
2646 2919 3.911661 CCAAGCTAAATATGGCAGAGC 57.088 47.619 0.00 0.00 35.08 4.09
2661 2934 2.531522 AAATCTTGTTGTGGCCAAGC 57.468 45.000 7.24 0.33 39.30 4.01
2771 3044 2.431057 CTCTGCGTGGATAAGTAAGGGT 59.569 50.000 0.00 0.00 0.00 4.34
2861 3134 5.396101 CCATGCTGGAGTTCTAGAATTCAGA 60.396 44.000 24.36 12.49 40.96 3.27
2867 3140 5.957771 ATTACCATGCTGGAGTTCTAGAA 57.042 39.130 0.00 0.00 40.96 2.10
2903 3176 6.404954 GGAGAGAGTAGTGACCAAGTACATTC 60.405 46.154 0.00 0.00 37.18 2.67
2910 3183 2.712709 TCGGAGAGAGTAGTGACCAAG 58.287 52.381 0.00 0.00 0.00 3.61
2947 3220 6.491394 TGAATTGTACAGTCAAAAGGAAACG 58.509 36.000 8.45 0.00 0.00 3.60
2952 3225 6.483307 TCACTCTGAATTGTACAGTCAAAAGG 59.517 38.462 11.25 2.51 36.81 3.11
3038 3311 2.418976 GGCACGGTTCAAATCTCTAACC 59.581 50.000 0.00 0.00 39.44 2.85
3053 3326 2.040544 GGTGTCCTTCATGGCACGG 61.041 63.158 0.00 0.00 40.95 4.94
3077 3350 3.003173 CCTTCTGACCGGCCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
3110 3383 5.641209 AGTTTTTGAATCTGAGAGATGGACG 59.359 40.000 0.00 0.00 34.65 4.79
3177 3450 1.073098 AAGAGAACCGGGGAAATGGT 58.927 50.000 6.32 0.00 41.20 3.55
3297 3571 1.203428 TCCCCATCTGGAACTTCCTCA 60.203 52.381 9.31 0.00 37.46 3.86
3381 3655 1.602311 GGAGATGGCATACAAGCAGG 58.398 55.000 0.00 0.00 35.83 4.85
3401 3675 1.268352 GAGTCGGAATCGAGGAGGATG 59.732 57.143 0.00 0.00 46.91 3.51
3407 3681 1.003759 CGTAGTGAGTCGGAATCGAGG 60.004 57.143 0.65 0.00 46.91 4.63
3409 3683 1.662629 GTCGTAGTGAGTCGGAATCGA 59.337 52.381 0.65 0.00 43.86 3.59
3422 3696 3.321111 ACTGTTGATCACAAGGTCGTAGT 59.679 43.478 0.00 0.00 36.64 2.73
3425 3699 2.910688 ACTGTTGATCACAAGGTCGT 57.089 45.000 0.00 0.00 36.64 4.34
3427 3701 4.932200 CCTAGAACTGTTGATCACAAGGTC 59.068 45.833 12.17 12.17 36.64 3.85
3446 3720 4.403734 AGTTAGCCTAGCTAGAAGCCTAG 58.596 47.826 22.70 4.48 43.77 3.02
3447 3721 4.456662 AGTTAGCCTAGCTAGAAGCCTA 57.543 45.455 22.70 12.85 43.77 3.93
3448 3722 3.322191 AGTTAGCCTAGCTAGAAGCCT 57.678 47.619 22.70 13.75 43.77 4.58
3449 3723 4.409718 AAAGTTAGCCTAGCTAGAAGCC 57.590 45.455 22.70 7.36 43.77 4.35
3450 3724 4.034626 GCAAAAGTTAGCCTAGCTAGAAGC 59.965 45.833 22.70 17.08 42.34 3.86
3451 3725 4.268884 CGCAAAAGTTAGCCTAGCTAGAAG 59.731 45.833 22.70 7.48 42.34 2.85
3452 3726 4.181578 CGCAAAAGTTAGCCTAGCTAGAA 58.818 43.478 22.70 5.79 42.34 2.10
3453 3727 3.782046 CGCAAAAGTTAGCCTAGCTAGA 58.218 45.455 22.70 0.00 42.34 2.43
3474 3748 1.353103 CATCCTGGCATTCGTTCGC 59.647 57.895 0.00 0.00 0.00 4.70
3494 3768 0.533951 AGCTGAGCATGTCGATGTGA 59.466 50.000 7.39 0.00 31.50 3.58
3609 3883 5.976534 TGCATGCTTACACAAACAGTTTAAG 59.023 36.000 20.33 0.26 41.36 1.85
3612 3886 4.111916 GTGCATGCTTACACAAACAGTTT 58.888 39.130 20.33 0.00 36.77 2.66
3629 3903 1.675483 TGCTGAAAGTGAAACGTGCAT 59.325 42.857 0.00 0.00 45.86 3.96
3635 3909 6.500684 TTATGATCCTGCTGAAAGTGAAAC 57.499 37.500 0.00 0.00 35.30 2.78
3639 3913 4.579340 AGCATTATGATCCTGCTGAAAGTG 59.421 41.667 7.99 0.00 44.21 3.16
3640 3914 4.789807 AGCATTATGATCCTGCTGAAAGT 58.210 39.130 7.99 0.00 44.21 2.66
3641 3915 6.872628 TTAGCATTATGATCCTGCTGAAAG 57.127 37.500 15.42 0.00 45.38 2.62
3642 3916 6.830324 AGTTTAGCATTATGATCCTGCTGAAA 59.170 34.615 15.42 10.56 45.38 2.69
3651 3925 7.020010 GCATGCAGTAGTTTAGCATTATGATC 58.980 38.462 14.21 0.00 45.98 2.92
3662 3936 6.313658 CAGTTCTGTATGCATGCAGTAGTTTA 59.686 38.462 34.41 18.11 40.72 2.01
3675 3949 3.873952 GGGTTCTCATCAGTTCTGTATGC 59.126 47.826 0.00 0.00 0.00 3.14
3710 3992 3.803778 GGACAAACTGCAGAAATTTGTGG 59.196 43.478 28.51 9.54 44.45 4.17
3731 4013 1.628340 TGTGACCATGTTACAGGGAGG 59.372 52.381 23.33 8.55 37.52 4.30
3773 4055 0.835941 ATGAGGCTAGCTGGTTCAGG 59.164 55.000 15.72 0.00 31.21 3.86
3926 4225 4.271590 TCGCGATCAACATTACATTTGG 57.728 40.909 3.71 0.00 0.00 3.28
3931 4230 4.923281 CCTATCATCGCGATCAACATTACA 59.077 41.667 20.85 0.00 35.39 2.41
3943 4242 3.675225 ACGATTTTGATCCTATCATCGCG 59.325 43.478 0.00 0.00 40.85 5.87
3964 4264 4.453819 AGTGATGCAGCTCTTGAGTTTTAC 59.546 41.667 2.53 0.00 0.00 2.01
3989 4289 4.162040 CAGAATAGACCCCTGCAGAAAT 57.838 45.455 17.39 0.00 0.00 2.17
4022 4323 2.356913 CACACCACGATGTCGGCA 60.357 61.111 7.38 0.00 44.95 5.69
4046 4347 1.219124 GAGATGGAACTGCGCCTCA 59.781 57.895 4.18 0.00 0.00 3.86
4085 4386 4.128139 CGAACCCGGTGTTTGTGA 57.872 55.556 0.00 0.00 37.29 3.58
4091 4392 2.111669 GGGAAACGAACCCGGTGT 59.888 61.111 0.00 0.00 40.78 4.16
4113 4414 9.131791 AGTGTAAAGATTCATAGTGTTTTTGGT 57.868 29.630 0.00 0.00 0.00 3.67
4121 4423 4.576463 GGGGCAGTGTAAAGATTCATAGTG 59.424 45.833 0.00 0.00 0.00 2.74
4142 4445 3.328382 TCGAATTGTAGGACTGTTGGG 57.672 47.619 0.00 0.00 0.00 4.12
4161 4464 6.640907 GTGTGAAATGAGTATGGTTTTGGTTC 59.359 38.462 0.00 0.00 0.00 3.62
4206 4509 1.292546 AGCTCCTTCCCTAGGTAAGCT 59.707 52.381 8.58 10.79 45.02 3.74
4230 4533 2.432628 GTCGACAGGACCTTGCCG 60.433 66.667 11.55 0.00 39.90 5.69
4266 4569 1.004918 CTTCCCTTCGGCGAACACT 60.005 57.895 19.83 0.00 0.00 3.55
4404 4707 2.431057 AGAAACGGCTACGAATCTGGAT 59.569 45.455 0.00 0.00 44.60 3.41
4406 4709 2.159226 AGAGAAACGGCTACGAATCTGG 60.159 50.000 0.00 0.00 44.60 3.86
4418 4721 4.035208 GGCCAATTATACACAGAGAAACGG 59.965 45.833 0.00 0.00 0.00 4.44
4419 4722 4.035208 GGGCCAATTATACACAGAGAAACG 59.965 45.833 4.39 0.00 0.00 3.60
4425 4728 3.738982 CGATGGGCCAATTATACACAGA 58.261 45.455 11.89 0.00 0.00 3.41
4440 4743 0.242825 GAATGGATGCATGCGATGGG 59.757 55.000 14.09 0.00 0.00 4.00
4444 4748 1.529010 GGGGAATGGATGCATGCGA 60.529 57.895 14.09 2.48 0.00 5.10
4445 4749 1.829096 TGGGGAATGGATGCATGCG 60.829 57.895 14.09 0.00 0.00 4.73
4463 4767 7.296856 TGAATGGATGGATATACAACAATGGT 58.703 34.615 0.00 0.00 28.99 3.55
4496 4800 6.665992 TCAGAGAAATAACCTACACTGTGT 57.334 37.500 18.51 18.51 0.00 3.72
4568 4874 9.775854 AGAATAATTCACATTCCTCTCATACTG 57.224 33.333 0.00 0.00 33.67 2.74
4569 4875 9.775854 CAGAATAATTCACATTCCTCTCATACT 57.224 33.333 0.00 0.00 33.67 2.12
4570 4876 8.502387 GCAGAATAATTCACATTCCTCTCATAC 58.498 37.037 0.00 0.00 33.67 2.39
4571 4877 8.435187 AGCAGAATAATTCACATTCCTCTCATA 58.565 33.333 0.00 0.00 33.67 2.15
4572 4878 7.288560 AGCAGAATAATTCACATTCCTCTCAT 58.711 34.615 0.00 0.00 33.67 2.90
4611 4917 0.796312 GCAGCTGAAAATTCGTCGGA 59.204 50.000 20.43 0.00 0.00 4.55
4686 4994 2.047844 GCACGCCTGAGCTTCTGA 60.048 61.111 0.00 0.00 36.60 3.27
4691 4999 2.027625 GTTTACGCACGCCTGAGCT 61.028 57.895 0.00 0.00 36.60 4.09
4728 5050 0.529378 AGGGCTTAACGTACACGAGG 59.471 55.000 9.04 0.00 43.02 4.63
4749 5072 2.757868 CAAAACCCCATTCCGCTTCATA 59.242 45.455 0.00 0.00 0.00 2.15
4759 5082 3.106827 CAGCCTTATCCAAAACCCCATT 58.893 45.455 0.00 0.00 0.00 3.16
4847 5171 2.727392 CGCCGGAATGGTAGTGGGA 61.727 63.158 5.05 0.00 41.21 4.37
4849 5173 2.203015 CCGCCGGAATGGTAGTGG 60.203 66.667 5.05 0.00 41.21 4.00
4850 5174 2.895372 GCCGCCGGAATGGTAGTG 60.895 66.667 7.68 0.00 41.21 2.74
4893 5220 1.449778 GGCGGAGGTAGAGGTTTGC 60.450 63.158 0.00 0.00 0.00 3.68
4920 5247 1.697982 GGAAACTGTACAGGGGAGTGT 59.302 52.381 26.12 0.92 34.21 3.55
5066 5396 2.125552 CATTCCAGCGCGGACTCA 60.126 61.111 18.39 6.98 46.36 3.41
5225 5555 4.460683 AAATCCAGCGGCGCCGTA 62.461 61.111 45.02 29.62 42.09 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.