Multiple sequence alignment - TraesCS2A01G587700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G587700 chr2A 100.000 5191 0 0 1 5191 777495076 777500266 0.000000e+00 9587
1 TraesCS2A01G587700 chr2A 86.316 570 36 13 1 532 777408494 777409059 2.690000e-162 582
2 TraesCS2A01G587700 chr2A 86.316 570 36 13 1 532 777414790 777415355 2.690000e-162 582
3 TraesCS2A01G587700 chr2A 86.316 570 36 13 1 532 777421095 777421660 2.690000e-162 582
4 TraesCS2A01G587700 chr2A 86.140 570 38 11 1 532 777396433 777396999 1.250000e-160 577
5 TraesCS2A01G587700 chr2A 86.140 570 37 13 1 532 777427394 777427959 1.250000e-160 577
6 TraesCS2A01G587700 chr2A 86.140 570 37 13 1 532 777433689 777434254 1.250000e-160 577
7 TraesCS2A01G587700 chr2A 84.783 506 68 4 1235 1734 232452936 232453438 2.790000e-137 499
8 TraesCS2A01G587700 chr2D 91.821 2751 139 34 1 2696 635270919 635268200 0.000000e+00 3755
9 TraesCS2A01G587700 chr2D 92.227 1801 77 21 2551 4330 635254179 635252421 0.000000e+00 2492
10 TraesCS2A01G587700 chr2D 85.217 575 45 8 1 538 635479855 635479284 5.870000e-154 555
11 TraesCS2A01G587700 chr2D 85.366 574 37 13 1 531 635285392 635284823 7.600000e-153 551
12 TraesCS2A01G587700 chr2D 86.508 504 59 4 1237 1734 41231631 41232131 3.530000e-151 545
13 TraesCS2A01G587700 chr2D 84.896 576 46 12 1 538 635505174 635504602 1.270000e-150 544
14 TraesCS2A01G587700 chr2D 87.302 504 26 13 3102 3575 635267593 635267098 4.570000e-150 542
15 TraesCS2A01G587700 chr2D 84.722 576 47 12 1 538 635488534 635487962 5.910000e-149 538
16 TraesCS2A01G587700 chr2D 84.549 576 48 12 1 538 635497197 635496625 2.750000e-147 532
17 TraesCS2A01G587700 chr2D 84.375 576 49 12 1 538 635513124 635512552 1.280000e-145 527
18 TraesCS2A01G587700 chr2D 89.145 433 25 8 803 1213 635309305 635308873 2.140000e-143 520
19 TraesCS2A01G587700 chr2D 84.119 573 46 11 1 531 635311413 635310844 3.580000e-141 512
20 TraesCS2A01G587700 chr2D 85.152 330 38 7 3654 3981 635266992 635266672 1.390000e-85 327
21 TraesCS2A01G587700 chr2D 85.167 209 16 4 4326 4534 635252390 635252197 3.170000e-47 200
22 TraesCS2A01G587700 chr2D 92.381 105 7 1 4725 4829 635252086 635251983 1.160000e-31 148
23 TraesCS2A01G587700 chr2B 92.190 2484 132 33 247 2696 779372193 779369738 0.000000e+00 3456
24 TraesCS2A01G587700 chr2B 95.934 787 29 1 3173 3959 779361049 779360266 0.000000e+00 1273
25 TraesCS2A01G587700 chr2B 88.035 794 38 15 4421 5191 779359857 779359098 0.000000e+00 887
26 TraesCS2A01G587700 chr2B 87.084 511 31 12 3095 3575 779369175 779368670 3.530000e-151 545
27 TraesCS2A01G587700 chr2B 90.842 404 23 6 2784 3173 779361576 779361173 3.560000e-146 529
28 TraesCS2A01G587700 chr2B 84.055 577 43 12 1 531 779423212 779422639 1.290000e-140 510
29 TraesCS2A01G587700 chr2B 83.882 577 44 12 1 531 779391059 779390486 6.000000e-139 505
30 TraesCS2A01G587700 chr2B 83.882 577 44 12 1 531 779416760 779416187 6.000000e-139 505
31 TraesCS2A01G587700 chr2B 83.709 577 45 12 1 531 779410311 779409738 2.790000e-137 499
32 TraesCS2A01G587700 chr2B 86.885 427 27 7 803 1207 779453283 779452864 7.930000e-123 451
33 TraesCS2A01G587700 chr2B 86.588 425 28 8 805 1207 779508819 779508402 4.770000e-120 442
34 TraesCS2A01G587700 chr2B 86.557 424 28 9 803 1204 779485483 779485067 1.720000e-119 440
35 TraesCS2A01G587700 chr2B 86.183 427 29 8 803 1207 779421105 779420687 7.980000e-118 435
36 TraesCS2A01G587700 chr2B 86.183 427 30 15 803 1207 779427561 779427142 7.980000e-118 435
37 TraesCS2A01G587700 chr2B 86.183 427 30 7 803 1207 779550829 779550410 7.980000e-118 435
38 TraesCS2A01G587700 chr2B 86.150 426 31 14 803 1207 779562313 779561895 7.980000e-118 435
39 TraesCS2A01G587700 chr2B 85.714 427 32 7 803 1207 779440441 779440022 1.730000e-114 424
40 TraesCS2A01G587700 chr2B 85.714 427 24 11 803 1207 779568661 779568250 2.890000e-112 416
41 TraesCS2A01G587700 chr2B 94.275 262 4 2 1 251 779372534 779372273 1.750000e-104 390
42 TraesCS2A01G587700 chr2B 93.004 243 11 3 2551 2793 779363220 779362984 2.970000e-92 350
43 TraesCS2A01G587700 chr2B 85.061 328 38 7 3656 3981 779368571 779368253 1.800000e-84 324
44 TraesCS2A01G587700 chr2B 81.672 311 45 9 3973 4274 779368121 779367814 1.120000e-61 248
45 TraesCS2A01G587700 chr7D 86.957 506 57 4 1235 1734 83970554 83971056 1.260000e-155 560
46 TraesCS2A01G587700 chr1A 86.282 503 59 6 1235 1734 139505897 139506392 5.910000e-149 538
47 TraesCS2A01G587700 chr3B 86.166 506 58 5 1235 1734 651954386 651953887 2.130000e-148 536
48 TraesCS2A01G587700 chr5D 85.771 506 60 5 1235 1734 481217574 481218073 4.600000e-145 525
49 TraesCS2A01G587700 chrUn 83.910 578 42 12 1 531 393663967 393664540 6.000000e-139 505
50 TraesCS2A01G587700 chrUn 84.024 507 40 11 70 538 341264582 341264079 2.850000e-122 449
51 TraesCS2A01G587700 chrUn 84.232 501 38 11 70 532 392538717 392539214 2.850000e-122 449
52 TraesCS2A01G587700 chrUn 86.321 424 29 7 803 1204 345246906 345247322 7.980000e-118 435
53 TraesCS2A01G587700 chrUn 85.480 427 33 15 803 1207 338367694 338367275 8.040000e-113 418
54 TraesCS2A01G587700 chrUn 85.480 427 33 15 803 1207 420324439 420324020 8.040000e-113 418
55 TraesCS2A01G587700 chrUn 88.947 190 17 2 353 538 402331963 402331774 1.120000e-56 231
56 TraesCS2A01G587700 chr7A 85.341 498 59 7 1244 1734 155496387 155495897 2.160000e-138 503


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G587700 chr2A 777495076 777500266 5190 False 9587.000000 9587 100.000000 1 5191 1 chr2A.!!$F8 5190
1 TraesCS2A01G587700 chr2A 777408494 777409059 565 False 582.000000 582 86.316000 1 532 1 chr2A.!!$F3 531
2 TraesCS2A01G587700 chr2A 777414790 777415355 565 False 582.000000 582 86.316000 1 532 1 chr2A.!!$F4 531
3 TraesCS2A01G587700 chr2A 777421095 777421660 565 False 582.000000 582 86.316000 1 532 1 chr2A.!!$F5 531
4 TraesCS2A01G587700 chr2A 777396433 777396999 566 False 577.000000 577 86.140000 1 532 1 chr2A.!!$F2 531
5 TraesCS2A01G587700 chr2A 777427394 777427959 565 False 577.000000 577 86.140000 1 532 1 chr2A.!!$F6 531
6 TraesCS2A01G587700 chr2A 777433689 777434254 565 False 577.000000 577 86.140000 1 532 1 chr2A.!!$F7 531
7 TraesCS2A01G587700 chr2A 232452936 232453438 502 False 499.000000 499 84.783000 1235 1734 1 chr2A.!!$F1 499
8 TraesCS2A01G587700 chr2D 635266672 635270919 4247 True 1541.333333 3755 88.091667 1 3981 3 chr2D.!!$R8 3980
9 TraesCS2A01G587700 chr2D 635251983 635254179 2196 True 946.666667 2492 89.925000 2551 4829 3 chr2D.!!$R7 2278
10 TraesCS2A01G587700 chr2D 635479284 635479855 571 True 555.000000 555 85.217000 1 538 1 chr2D.!!$R2 537
11 TraesCS2A01G587700 chr2D 635284823 635285392 569 True 551.000000 551 85.366000 1 531 1 chr2D.!!$R1 530
12 TraesCS2A01G587700 chr2D 41231631 41232131 500 False 545.000000 545 86.508000 1237 1734 1 chr2D.!!$F1 497
13 TraesCS2A01G587700 chr2D 635504602 635505174 572 True 544.000000 544 84.896000 1 538 1 chr2D.!!$R5 537
14 TraesCS2A01G587700 chr2D 635487962 635488534 572 True 538.000000 538 84.722000 1 538 1 chr2D.!!$R3 537
15 TraesCS2A01G587700 chr2D 635496625 635497197 572 True 532.000000 532 84.549000 1 538 1 chr2D.!!$R4 537
16 TraesCS2A01G587700 chr2D 635512552 635513124 572 True 527.000000 527 84.375000 1 538 1 chr2D.!!$R6 537
17 TraesCS2A01G587700 chr2D 635308873 635311413 2540 True 516.000000 520 86.632000 1 1213 2 chr2D.!!$R9 1212
18 TraesCS2A01G587700 chr2B 779367814 779372534 4720 True 992.600000 3456 88.056400 1 4274 5 chr2B.!!$R11 4273
19 TraesCS2A01G587700 chr2B 779359098 779363220 4122 True 759.750000 1273 91.953750 2551 5191 4 chr2B.!!$R10 2640
20 TraesCS2A01G587700 chr2B 779390486 779391059 573 True 505.000000 505 83.882000 1 531 1 chr2B.!!$R1 530
21 TraesCS2A01G587700 chr2B 779409738 779410311 573 True 499.000000 499 83.709000 1 531 1 chr2B.!!$R2 530
22 TraesCS2A01G587700 chr2B 779416187 779427561 11374 True 471.250000 510 85.075750 1 1207 4 chr2B.!!$R12 1206
23 TraesCS2A01G587700 chr7D 83970554 83971056 502 False 560.000000 560 86.957000 1235 1734 1 chr7D.!!$F1 499
24 TraesCS2A01G587700 chrUn 393663967 393664540 573 False 505.000000 505 83.910000 1 531 1 chrUn.!!$F3 530
25 TraesCS2A01G587700 chrUn 341264079 341264582 503 True 449.000000 449 84.024000 70 538 1 chrUn.!!$R2 468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 13072 1.298014 GAGCCCTCCACAAGTCCAG 59.702 63.158 0.00 0.0 0.00 3.86 F
1864 14098 0.036952 CTCCGTTCCAGTGCACAGAT 60.037 55.000 21.04 0.0 0.00 2.90 F
2225 14459 1.122227 AGCCTGCTGCCTTTTTCAAA 58.878 45.000 0.00 0.0 42.71 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2700 14950 0.110010 CGCAAACACACACACACACA 60.110 50.0 0.00 0.0 0.0 3.72 R
2702 14952 0.110010 CACGCAAACACACACACACA 60.110 50.0 0.00 0.0 0.0 3.72 R
4200 18642 0.777631 CAAACAAACAATGGCGCTCG 59.222 50.0 7.64 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 4509 3.577848 TGTAGTTTTCCATGGCAAGCATT 59.422 39.130 13.02 0.00 0.00 3.56
290 4738 5.532025 AAGCGCTTTGTACTCTTATTGTC 57.468 39.130 18.98 0.00 0.00 3.18
333 4781 5.519566 TGCTTGAAACTAAAACTGTGCATTG 59.480 36.000 0.00 0.00 0.00 2.82
335 4783 6.508404 GCTTGAAACTAAAACTGTGCATTGTG 60.508 38.462 0.00 0.00 0.00 3.33
340 4788 6.645700 ACTAAAACTGTGCATTGTGTTTTG 57.354 33.333 21.18 16.13 41.04 2.44
468 11386 8.616076 GCTCAAAATAACTGCATAGTTCACTAT 58.384 33.333 0.00 0.00 43.53 2.12
520 11445 7.492524 TCAGTCTTAGAATGGCACTAGTTATG 58.507 38.462 9.84 0.00 0.00 1.90
535 11460 8.213518 CACTAGTTATGAACCAGTGCAATTAT 57.786 34.615 5.25 0.00 42.49 1.28
708 12726 5.071923 AGGGGTAAATAGCACATCTAACCTC 59.928 44.000 0.00 0.00 29.81 3.85
709 12727 5.071923 GGGGTAAATAGCACATCTAACCTCT 59.928 44.000 0.00 0.00 30.10 3.69
710 12728 6.224584 GGGTAAATAGCACATCTAACCTCTC 58.775 44.000 0.00 0.00 30.10 3.20
711 12729 6.042208 GGGTAAATAGCACATCTAACCTCTCT 59.958 42.308 0.00 0.00 30.10 3.10
712 12730 7.232941 GGGTAAATAGCACATCTAACCTCTCTA 59.767 40.741 0.00 0.00 30.10 2.43
842 13035 1.881903 GCAAGGGGAAGAAGCAAGCC 61.882 60.000 0.00 0.00 0.00 4.35
864 13057 2.699809 CAGCAATGACGAGCGAGC 59.300 61.111 0.00 0.00 35.48 5.03
879 13072 1.298014 GAGCCCTCCACAAGTCCAG 59.702 63.158 0.00 0.00 0.00 3.86
910 13103 2.974698 GCCAATCCGCCATCCTCG 60.975 66.667 0.00 0.00 0.00 4.63
1024 13249 2.391389 GGGAAGAAGCGCAAGTCCG 61.391 63.158 11.47 0.00 41.68 4.79
1454 13687 3.518634 TTTTTGGGTGTTGCTGACTTC 57.481 42.857 0.00 0.00 0.00 3.01
1456 13689 1.679139 TTGGGTGTTGCTGACTTCAG 58.321 50.000 1.56 1.56 46.40 3.02
1461 13694 2.454055 GTGTTGCTGACTTCAGTTTGC 58.546 47.619 8.04 0.00 45.45 3.68
1625 13859 2.941720 GGCATCCATTCTCAACTCTGAC 59.058 50.000 0.00 0.00 0.00 3.51
1628 13862 1.066858 TCCATTCTCAACTCTGACGCC 60.067 52.381 0.00 0.00 0.00 5.68
1658 13892 5.126869 TCAATTATTGACCATTGCACCGATT 59.873 36.000 3.20 0.00 34.08 3.34
1675 13909 4.533311 ACCGATTAGGAACCCTTTTGAGTA 59.467 41.667 0.00 0.00 45.00 2.59
1676 13910 5.013391 ACCGATTAGGAACCCTTTTGAGTAA 59.987 40.000 0.00 0.00 45.00 2.24
1699 13933 4.432712 AGTTTAATCGCATTTTGGATGCC 58.567 39.130 5.51 0.00 41.71 4.40
1715 13949 6.618287 TGGATGCCGAGTAAATTGAAATAG 57.382 37.500 0.00 0.00 0.00 1.73
1765 13999 2.175878 ATTCCTGAGTCTGTGTGTGC 57.824 50.000 0.00 0.00 0.00 4.57
1808 14042 1.880027 GTCAAGTTGGACAGCCGAATT 59.120 47.619 2.34 0.00 36.31 2.17
1849 14083 1.450134 TGCCATGCTACTTGCTCCG 60.450 57.895 0.00 0.00 43.37 4.63
1857 14091 1.714794 CTACTTGCTCCGTTCCAGTG 58.285 55.000 0.00 0.00 0.00 3.66
1864 14098 0.036952 CTCCGTTCCAGTGCACAGAT 60.037 55.000 21.04 0.00 0.00 2.90
1889 14123 7.793902 TGAGCTTCTTCTCGTTGTTTTTATAC 58.206 34.615 0.00 0.00 35.90 1.47
1958 14192 1.369091 GCCGATACACCAGTGGCAAG 61.369 60.000 9.78 1.78 45.06 4.01
1961 14195 2.632377 CGATACACCAGTGGCAAGATT 58.368 47.619 9.78 0.00 34.19 2.40
2225 14459 1.122227 AGCCTGCTGCCTTTTTCAAA 58.878 45.000 0.00 0.00 42.71 2.69
2232 14466 4.779696 TGCTGCCTTTTTCAAAGGAATTT 58.220 34.783 17.80 0.00 39.81 1.82
2254 14490 1.674221 GCTGCCACTCTGTCAGGTAAG 60.674 57.143 0.00 0.00 0.00 2.34
2283 14519 8.804912 TTAGAGTAGAGAATTTTCTAGGACGT 57.195 34.615 5.98 0.00 37.73 4.34
2299 14543 2.288152 GGACGTGTGGCAAATTCATTGT 60.288 45.455 0.00 0.00 41.32 2.71
2300 14544 2.725723 GACGTGTGGCAAATTCATTGTG 59.274 45.455 0.00 0.00 41.32 3.33
2304 14548 4.317980 CGTGTGGCAAATTCATTGTGTTTC 60.318 41.667 0.00 0.00 41.32 2.78
2395 14639 7.446625 AGTTAGACTTGCATCTGAATGAAGTTT 59.553 33.333 0.00 0.00 35.38 2.66
2689 14933 7.029563 GGCACCTTATAATCTGTTCTTTTGTG 58.970 38.462 0.00 0.00 0.00 3.33
2700 14950 3.316588 TGTTCTTTTGTGTGTGTGTGTGT 59.683 39.130 0.00 0.00 0.00 3.72
2702 14952 2.881513 TCTTTTGTGTGTGTGTGTGTGT 59.118 40.909 0.00 0.00 0.00 3.72
2704 14954 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
2705 14955 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2706 14956 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2707 14957 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2708 14958 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2709 14959 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2710 14960 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2711 14961 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2712 14962 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2713 14963 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2714 14964 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2715 14965 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
2716 14966 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
2724 14974 1.395262 TGTGTGTGTGTTTGCGTGTAG 59.605 47.619 0.00 0.00 0.00 2.74
2926 16867 6.164176 CACTTCCTTTACTACGTCCTTTCAT 58.836 40.000 0.00 0.00 0.00 2.57
2954 16895 5.109903 GTCTGTCTGCCAATTTATACGACT 58.890 41.667 0.00 0.00 0.00 4.18
2999 16940 7.116233 GGTTTTCACAAGCCTGTTATTACATTG 59.884 37.037 0.00 0.00 31.64 2.82
3086 17139 5.827756 TCTTGTTCTACAGTATCTCAGGGA 58.172 41.667 0.00 0.00 0.00 4.20
3087 17140 5.888724 TCTTGTTCTACAGTATCTCAGGGAG 59.111 44.000 0.00 0.00 0.00 4.30
3088 17141 3.954904 TGTTCTACAGTATCTCAGGGAGC 59.045 47.826 0.00 0.00 0.00 4.70
3089 17142 4.211920 GTTCTACAGTATCTCAGGGAGCT 58.788 47.826 0.00 0.00 0.00 4.09
3090 17143 4.093472 TCTACAGTATCTCAGGGAGCTC 57.907 50.000 4.71 4.71 0.00 4.09
3093 17158 0.178975 AGTATCTCAGGGAGCTCCGG 60.179 60.000 26.36 20.28 41.52 5.14
3153 17223 4.337274 TCTGTCATGCAACATGATGGATTC 59.663 41.667 12.97 5.15 0.00 2.52
3182 17376 4.407296 AGGTGCCTGATACTTTCTAAGAGG 59.593 45.833 0.00 0.00 0.00 3.69
3189 17383 8.425703 GCCTGATACTTTCTAAGAGGATAGTTT 58.574 37.037 0.00 0.00 31.83 2.66
3257 17465 7.175641 CAGTGGTTGAAATGTATCTCCTTTTCT 59.824 37.037 0.00 0.00 32.58 2.52
3357 17581 1.787012 CTTTGCCGTACCGTGTACTT 58.213 50.000 10.96 0.00 0.00 2.24
3588 17813 6.183360 GCTTTTCTTCTCTGTGAACCTTTTCT 60.183 38.462 0.00 0.00 32.36 2.52
3982 18271 9.619316 GATATGTCGATATATATCCTTCACTGC 57.381 37.037 13.90 0.00 32.70 4.40
3993 18422 1.614051 CCTTCACTGCCTGCACCATTA 60.614 52.381 0.00 0.00 0.00 1.90
4003 18432 3.055891 GCCTGCACCATTAATTTCCAGTT 60.056 43.478 0.00 0.00 0.00 3.16
4009 18440 6.041409 TGCACCATTAATTTCCAGTTCTTTGA 59.959 34.615 0.00 0.00 0.00 2.69
4028 18465 6.917477 TCTTTGATTTGCATGTTAATATCCGC 59.083 34.615 0.00 0.00 0.00 5.54
4038 18475 6.441274 CATGTTAATATCCGCTCAAGCAAAT 58.559 36.000 2.50 0.00 42.21 2.32
4049 18487 4.266976 CGCTCAAGCAAATGATTTCATTCC 59.733 41.667 6.27 2.02 40.75 3.01
4074 18512 4.022849 GTGCAATCAAAGCCTTTCTACTGT 60.023 41.667 0.00 0.00 0.00 3.55
4076 18514 4.379918 GCAATCAAAGCCTTTCTACTGTCC 60.380 45.833 0.00 0.00 0.00 4.02
4080 18522 3.409026 AAGCCTTTCTACTGTCCTGTG 57.591 47.619 0.00 0.00 0.00 3.66
4085 18527 3.309388 CTTTCTACTGTCCTGTGACACG 58.691 50.000 0.22 0.00 46.40 4.49
4104 18546 1.798813 CGGTTGTGTCCTTAACTCTGC 59.201 52.381 0.00 0.00 0.00 4.26
4192 18634 2.791179 TGCCCATGGAGGAGGATTAATT 59.209 45.455 15.22 0.00 41.22 1.40
4197 18639 1.239347 GGAGGAGGATTAATTGCCGC 58.761 55.000 0.00 0.00 0.00 6.53
4200 18642 1.282875 GAGGATTAATTGCCGCGGC 59.717 57.895 42.35 42.35 42.35 6.53
4250 18693 1.234821 TCATCGGCGCTTCAGTTTTT 58.765 45.000 7.64 0.00 0.00 1.94
4259 18702 4.094887 GGCGCTTCAGTTTTTGATCATAGA 59.905 41.667 7.64 0.00 35.27 1.98
4346 18826 8.731275 TGTAAGAACAAAAGAGTTGAGATTGA 57.269 30.769 0.00 0.00 30.91 2.57
4354 18834 9.305925 ACAAAAGAGTTGAGATTGAATTTCAAC 57.694 29.630 25.39 25.39 46.83 3.18
4383 18863 3.459227 TCATGGTTCCTGAATCTGGCATA 59.541 43.478 0.85 0.00 0.00 3.14
4397 18877 3.643320 TCTGGCATAGTGTAGATGAAGGG 59.357 47.826 0.00 0.00 0.00 3.95
4398 18878 2.104792 TGGCATAGTGTAGATGAAGGGC 59.895 50.000 0.00 0.00 0.00 5.19
4405 18885 1.621317 TGTAGATGAAGGGCGTGAACA 59.379 47.619 0.00 0.00 0.00 3.18
4406 18886 2.037902 TGTAGATGAAGGGCGTGAACAA 59.962 45.455 0.00 0.00 0.00 2.83
4407 18887 1.523758 AGATGAAGGGCGTGAACAAC 58.476 50.000 0.00 0.00 0.00 3.32
4416 18896 3.887777 CGTGAACAACGCAAACAGA 57.112 47.368 0.00 0.00 46.99 3.41
4417 18897 2.166741 CGTGAACAACGCAAACAGAA 57.833 45.000 0.00 0.00 46.99 3.02
4418 18898 1.837747 CGTGAACAACGCAAACAGAAC 59.162 47.619 0.00 0.00 46.99 3.01
4419 18899 2.475519 CGTGAACAACGCAAACAGAACT 60.476 45.455 0.00 0.00 46.99 3.01
4423 19027 2.874849 ACAACGCAAACAGAACTTTGG 58.125 42.857 0.00 0.00 32.59 3.28
4430 19034 4.546570 GCAAACAGAACTTTGGGTATCAC 58.453 43.478 0.00 0.00 32.59 3.06
4459 19063 7.333528 ACACAACACAATTTTCTGACACTAT 57.666 32.000 0.00 0.00 0.00 2.12
4513 19117 7.094677 GGATACACACTACCGTAATTTTTGGTT 60.095 37.037 1.86 0.00 37.20 3.67
4519 19123 9.070179 ACACTACCGTAATTTTTGGTTCTAATT 57.930 29.630 1.86 0.00 37.20 1.40
4534 19138 8.268850 TGGTTCTAATTAGATCTTTGTTGAGC 57.731 34.615 15.82 7.89 31.40 4.26
4535 19139 7.336931 TGGTTCTAATTAGATCTTTGTTGAGCC 59.663 37.037 15.82 7.05 31.40 4.70
4536 19140 7.336931 GGTTCTAATTAGATCTTTGTTGAGCCA 59.663 37.037 15.82 0.00 31.40 4.75
4537 19141 8.394121 GTTCTAATTAGATCTTTGTTGAGCCAG 58.606 37.037 15.82 0.00 31.40 4.85
4538 19142 7.624549 TCTAATTAGATCTTTGTTGAGCCAGT 58.375 34.615 11.24 0.00 0.00 4.00
4539 19143 8.103305 TCTAATTAGATCTTTGTTGAGCCAGTT 58.897 33.333 11.24 0.00 0.00 3.16
4540 19144 5.947228 TTAGATCTTTGTTGAGCCAGTTG 57.053 39.130 0.00 0.00 0.00 3.16
4541 19145 3.825328 AGATCTTTGTTGAGCCAGTTGT 58.175 40.909 0.00 0.00 0.00 3.32
4542 19146 4.973168 AGATCTTTGTTGAGCCAGTTGTA 58.027 39.130 0.00 0.00 0.00 2.41
4543 19147 5.376625 AGATCTTTGTTGAGCCAGTTGTAA 58.623 37.500 0.00 0.00 0.00 2.41
4877 19493 1.578583 CGGGGATGATGTTTACGGTC 58.421 55.000 0.00 0.00 0.00 4.79
4927 19543 5.920273 GTCCCAATGTTGAACAGTACAATTG 59.080 40.000 3.74 3.24 0.00 2.32
4982 19616 0.402121 GCTCCCACCTCCAAAACTCT 59.598 55.000 0.00 0.00 0.00 3.24
5018 19652 5.102313 GGTCAACTTGTTTGTTGGAAGAAG 58.898 41.667 7.40 0.00 45.15 2.85
5020 19654 6.030228 GTCAACTTGTTTGTTGGAAGAAGAG 58.970 40.000 7.40 0.00 45.15 2.85
5022 19656 6.094048 TCAACTTGTTTGTTGGAAGAAGAGAG 59.906 38.462 7.40 0.00 45.15 3.20
5023 19657 5.745227 ACTTGTTTGTTGGAAGAAGAGAGA 58.255 37.500 2.13 0.00 34.54 3.10
5024 19658 5.819901 ACTTGTTTGTTGGAAGAAGAGAGAG 59.180 40.000 2.13 0.00 34.54 3.20
5025 19659 5.614324 TGTTTGTTGGAAGAAGAGAGAGA 57.386 39.130 0.00 0.00 0.00 3.10
5026 19660 5.989477 TGTTTGTTGGAAGAAGAGAGAGAA 58.011 37.500 0.00 0.00 0.00 2.87
5027 19661 6.414732 TGTTTGTTGGAAGAAGAGAGAGAAA 58.585 36.000 0.00 0.00 0.00 2.52
5028 19662 7.056635 TGTTTGTTGGAAGAAGAGAGAGAAAT 58.943 34.615 0.00 0.00 0.00 2.17
5029 19663 8.210946 TGTTTGTTGGAAGAAGAGAGAGAAATA 58.789 33.333 0.00 0.00 0.00 1.40
5030 19664 8.499967 GTTTGTTGGAAGAAGAGAGAGAAATAC 58.500 37.037 0.00 0.00 0.00 1.89
5031 19665 7.546250 TGTTGGAAGAAGAGAGAGAAATACT 57.454 36.000 0.00 0.00 0.00 2.12
5032 19666 7.382110 TGTTGGAAGAAGAGAGAGAAATACTG 58.618 38.462 0.00 0.00 0.00 2.74
5033 19667 5.971763 TGGAAGAAGAGAGAGAAATACTGC 58.028 41.667 0.00 0.00 0.00 4.40
5034 19668 5.105146 TGGAAGAAGAGAGAGAAATACTGCC 60.105 44.000 0.00 0.00 0.00 4.85
5074 19708 3.871006 TCACTTGATCAATGCATCGTACC 59.129 43.478 8.96 0.00 0.00 3.34
5092 19726 4.963953 CGTACCAAGCAAATGATCGAATTC 59.036 41.667 0.00 0.00 0.00 2.17
5099 19733 5.188434 AGCAAATGATCGAATTCCTGAGAA 58.812 37.500 0.00 0.00 36.15 2.87
5111 19745 6.463614 CGAATTCCTGAGAAATATGGTCCTCT 60.464 42.308 0.00 0.00 35.09 3.69
5135 19769 2.429971 TGCTCCTTCATTTGTTGCAACA 59.570 40.909 27.96 27.96 37.08 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 4369 0.035056 GCCAACCCAGCACAGTAGAT 60.035 55.000 0.00 0.00 0.00 1.98
265 4710 5.106673 ACAATAAGAGTACAAAGCGCTTTCC 60.107 40.000 31.63 21.16 0.00 3.13
290 4738 7.596494 TCAAGCAAAATTACAAATCTCTCTGG 58.404 34.615 0.00 0.00 0.00 3.86
340 4788 5.695816 TGCATGCCTCTTGTTTCAATTAAAC 59.304 36.000 16.68 0.00 46.46 2.01
468 11386 4.081862 GCACTACAGTACCTGTAATGGACA 60.082 45.833 12.93 0.00 44.80 4.02
469 11387 4.159879 AGCACTACAGTACCTGTAATGGAC 59.840 45.833 12.93 0.51 44.80 4.02
650 12668 7.760794 GGATGTGCTATTTTTGACAAATCATCA 59.239 33.333 0.50 0.00 33.85 3.07
656 12674 8.729805 AAAAAGGATGTGCTATTTTTGACAAA 57.270 26.923 0.00 0.00 0.00 2.83
842 13035 3.197790 CTCGTCATTGCTGGGCCG 61.198 66.667 0.00 0.00 0.00 6.13
864 13057 1.352083 TTCTCTGGACTTGTGGAGGG 58.648 55.000 0.00 0.00 0.00 4.30
879 13072 2.609491 GGATTGGCGGGTTTTGTTTCTC 60.609 50.000 0.00 0.00 0.00 2.87
1024 13249 3.130160 CTTGGGCTGCTTCTCGGC 61.130 66.667 0.00 0.00 46.38 5.54
1390 13621 0.603707 TGACGAAGCAAGGCAAGAGG 60.604 55.000 0.00 0.00 0.00 3.69
1454 13687 2.545742 GGCTACCAAAACCAGCAAACTG 60.546 50.000 0.00 0.00 44.05 3.16
1456 13689 1.601914 CGGCTACCAAAACCAGCAAAC 60.602 52.381 0.00 0.00 37.02 2.93
1461 13694 0.323629 TCTCCGGCTACCAAAACCAG 59.676 55.000 0.00 0.00 0.00 4.00
1625 13859 6.808008 ATGGTCAATAATTGATAAGAGGCG 57.192 37.500 0.00 0.00 42.47 5.52
1628 13862 7.864379 GGTGCAATGGTCAATAATTGATAAGAG 59.136 37.037 0.00 0.00 42.47 2.85
1675 13909 5.351189 GGCATCCAAAATGCGATTAAACTTT 59.649 36.000 4.11 0.00 45.41 2.66
1676 13910 4.869861 GGCATCCAAAATGCGATTAAACTT 59.130 37.500 4.11 0.00 45.41 2.66
1699 13933 7.786178 TGGACATCCTATTTCAATTTACTCG 57.214 36.000 0.00 0.00 36.82 4.18
1715 13949 5.863397 CACAAAACATACACATTGGACATCC 59.137 40.000 0.00 0.00 0.00 3.51
1765 13999 2.328099 GGCCGTCCTTCTGCACAAG 61.328 63.158 0.00 0.00 0.00 3.16
1836 14070 2.710204 ACTGGAACGGAGCAAGTAGCA 61.710 52.381 0.00 0.00 42.29 3.49
1849 14083 0.801251 GCTCATCTGTGCACTGGAAC 59.199 55.000 21.80 5.89 34.92 3.62
1857 14091 1.925847 CGAGAAGAAGCTCATCTGTGC 59.074 52.381 1.04 0.00 34.56 4.57
1864 14098 6.861065 ATAAAAACAACGAGAAGAAGCTCA 57.139 33.333 0.00 0.00 34.56 4.26
1889 14123 1.176527 ATTCAACAATCAGCACCCCG 58.823 50.000 0.00 0.00 0.00 5.73
1958 14192 2.094545 ACGCTTGAATGCTTTGGGAATC 60.095 45.455 0.00 0.00 0.00 2.52
1961 14195 2.192664 TACGCTTGAATGCTTTGGGA 57.807 45.000 0.00 0.00 0.00 4.37
2225 14459 1.891150 CAGAGTGGCAGCAAAATTCCT 59.109 47.619 0.00 0.00 0.00 3.36
2283 14519 4.763073 TGAAACACAATGAATTTGCCACA 58.237 34.783 0.00 0.00 39.03 4.17
2299 14543 9.636879 CAATCATACACCATACAAAATGAAACA 57.363 29.630 0.00 0.00 0.00 2.83
2300 14544 9.638239 ACAATCATACACCATACAAAATGAAAC 57.362 29.630 0.00 0.00 0.00 2.78
2343 14587 5.756347 GCACTAAATGTGGATTATGGTACGA 59.244 40.000 0.00 0.00 46.27 3.43
2346 14590 8.029782 ACTAGCACTAAATGTGGATTATGGTA 57.970 34.615 0.00 0.00 46.27 3.25
2395 14639 6.601332 AGTGAAGAGGAAAGGAAACAATACA 58.399 36.000 0.00 0.00 0.00 2.29
2657 14901 5.186198 ACAGATTATAAGGTGCCACACTTC 58.814 41.667 0.00 0.00 34.40 3.01
2689 14933 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2700 14950 0.110010 CGCAAACACACACACACACA 60.110 50.000 0.00 0.00 0.00 3.72
2702 14952 0.110010 CACGCAAACACACACACACA 60.110 50.000 0.00 0.00 0.00 3.72
2704 14954 1.395262 CTACACGCAAACACACACACA 59.605 47.619 0.00 0.00 0.00 3.72
2705 14955 1.395608 ACTACACGCAAACACACACAC 59.604 47.619 0.00 0.00 0.00 3.82
2706 14956 1.728068 ACTACACGCAAACACACACA 58.272 45.000 0.00 0.00 0.00 3.72
2707 14957 5.403166 TCTTATACTACACGCAAACACACAC 59.597 40.000 0.00 0.00 0.00 3.82
2708 14958 5.530712 TCTTATACTACACGCAAACACACA 58.469 37.500 0.00 0.00 0.00 3.72
2709 14959 6.074195 TGTTCTTATACTACACGCAAACACAC 60.074 38.462 0.00 0.00 0.00 3.82
2710 14960 5.984323 TGTTCTTATACTACACGCAAACACA 59.016 36.000 0.00 0.00 0.00 3.72
2711 14961 6.456447 TGTTCTTATACTACACGCAAACAC 57.544 37.500 0.00 0.00 0.00 3.32
2712 14962 6.311935 GGATGTTCTTATACTACACGCAAACA 59.688 38.462 0.00 0.00 0.00 2.83
2713 14963 6.311935 TGGATGTTCTTATACTACACGCAAAC 59.688 38.462 0.00 0.00 0.00 2.93
2714 14964 6.311935 GTGGATGTTCTTATACTACACGCAAA 59.688 38.462 0.00 0.00 0.00 3.68
2715 14965 5.808540 GTGGATGTTCTTATACTACACGCAA 59.191 40.000 0.00 0.00 0.00 4.85
2716 14966 5.105675 TGTGGATGTTCTTATACTACACGCA 60.106 40.000 0.00 0.00 0.00 5.24
2724 14974 7.277760 GGGCAAAATTTGTGGATGTTCTTATAC 59.722 37.037 7.60 0.00 0.00 1.47
2842 16750 9.342308 AGCTATAATATCTTTTACTGCAGCAAA 57.658 29.630 15.27 11.35 0.00 3.68
2926 16867 2.346766 AATTGGCAGACAGACACACA 57.653 45.000 0.00 0.00 32.34 3.72
2978 16919 6.072175 GGAACAATGTAATAACAGGCTTGTGA 60.072 38.462 0.65 0.00 36.77 3.58
2999 16940 3.378427 GCATGGTGGTCTCTATTTGGAAC 59.622 47.826 0.00 0.00 0.00 3.62
3088 17141 2.898729 ATATGAACACTGCTCCGGAG 57.101 50.000 27.83 27.83 0.00 4.63
3089 17142 3.055458 TCAAATATGAACACTGCTCCGGA 60.055 43.478 2.93 2.93 30.99 5.14
3090 17143 3.270027 TCAAATATGAACACTGCTCCGG 58.730 45.455 0.00 0.00 30.99 5.14
3153 17223 1.107114 AGTATCAGGCACCTCAGTCG 58.893 55.000 0.00 0.00 0.00 4.18
3189 17383 7.012327 GGCATCTCAGCAAGTAAATATAACACA 59.988 37.037 0.00 0.00 35.83 3.72
3194 17388 6.043127 TCCAGGCATCTCAGCAAGTAAATATA 59.957 38.462 0.00 0.00 35.83 0.86
3257 17465 5.414454 GCTTACAACATGTTCAGGGAATACA 59.586 40.000 8.48 0.00 0.00 2.29
3357 17581 3.181457 TGAAATGGGCAAAAACAGCATCA 60.181 39.130 0.00 0.00 0.00 3.07
3588 17813 1.075374 AGCACTTTGCCCCAGTTATGA 59.925 47.619 0.00 0.00 46.52 2.15
3717 18004 9.219603 CTCCAACTCATTCTTGTATCTGTTTAA 57.780 33.333 0.00 0.00 0.00 1.52
3719 18006 7.453393 TCTCCAACTCATTCTTGTATCTGTTT 58.547 34.615 0.00 0.00 0.00 2.83
3834 18123 5.680594 ATAAGCAGCATTCCAAAATCCAA 57.319 34.783 0.00 0.00 0.00 3.53
3943 18232 2.936498 CGACATATCGGTTGGCTTTTCT 59.064 45.455 0.00 0.00 44.99 2.52
3977 18266 3.514645 GAAATTAATGGTGCAGGCAGTG 58.485 45.455 0.00 0.00 0.00 3.66
3982 18271 4.463891 AGAACTGGAAATTAATGGTGCAGG 59.536 41.667 18.95 7.07 35.25 4.85
3993 18422 6.993902 ACATGCAAATCAAAGAACTGGAAATT 59.006 30.769 0.00 0.00 0.00 1.82
4003 18432 6.917477 GCGGATATTAACATGCAAATCAAAGA 59.083 34.615 0.00 0.00 0.00 2.52
4009 18440 6.389830 TTGAGCGGATATTAACATGCAAAT 57.610 33.333 0.00 0.00 0.00 2.32
4028 18465 6.310467 CACAGGAATGAAATCATTTGCTTGAG 59.690 38.462 9.82 1.48 45.72 3.02
4049 18487 3.655276 AGAAAGGCTTTGATTGCACAG 57.345 42.857 18.79 0.00 0.00 3.66
4074 18512 4.846551 CACAACCGTGTCACAGGA 57.153 55.556 17.22 0.00 38.41 3.86
4085 18527 2.152016 GGCAGAGTTAAGGACACAACC 58.848 52.381 0.00 0.00 0.00 3.77
4104 18546 1.439679 GAAACAGGTGAGCGTAAGGG 58.560 55.000 0.00 0.00 38.28 3.95
4200 18642 0.777631 CAAACAAACAATGGCGCTCG 59.222 50.000 7.64 0.00 0.00 5.03
4210 18652 2.166829 AGTCCACACAGCAAACAAACA 58.833 42.857 0.00 0.00 0.00 2.83
4250 18693 5.764686 ACACAGCAAAAACACTCTATGATCA 59.235 36.000 0.00 0.00 0.00 2.92
4259 18702 3.352648 AGGTACACACAGCAAAAACACT 58.647 40.909 0.00 0.00 0.00 3.55
4354 18834 6.016527 CCAGATTCAGGAACCATGAATACATG 60.017 42.308 6.80 0.00 45.15 3.21
4383 18863 1.557099 TCACGCCCTTCATCTACACT 58.443 50.000 0.00 0.00 0.00 3.55
4405 18885 1.822371 ACCCAAAGTTCTGTTTGCGTT 59.178 42.857 0.00 0.00 36.29 4.84
4406 18886 1.470051 ACCCAAAGTTCTGTTTGCGT 58.530 45.000 0.00 0.00 36.29 5.24
4407 18887 3.252215 TGATACCCAAAGTTCTGTTTGCG 59.748 43.478 0.00 0.00 36.29 4.85
4408 18888 4.278419 AGTGATACCCAAAGTTCTGTTTGC 59.722 41.667 0.00 0.00 36.29 3.68
4409 18889 5.278463 CCAGTGATACCCAAAGTTCTGTTTG 60.278 44.000 0.00 0.00 37.20 2.93
4410 18890 4.827284 CCAGTGATACCCAAAGTTCTGTTT 59.173 41.667 0.00 0.00 0.00 2.83
4411 18891 4.104102 TCCAGTGATACCCAAAGTTCTGTT 59.896 41.667 0.00 0.00 0.00 3.16
4412 18892 3.650942 TCCAGTGATACCCAAAGTTCTGT 59.349 43.478 0.00 0.00 0.00 3.41
4413 18893 4.286297 TCCAGTGATACCCAAAGTTCTG 57.714 45.455 0.00 0.00 0.00 3.02
4414 18894 4.104102 TGTTCCAGTGATACCCAAAGTTCT 59.896 41.667 0.00 0.00 0.00 3.01
4415 18895 4.215613 GTGTTCCAGTGATACCCAAAGTTC 59.784 45.833 0.00 0.00 0.00 3.01
4416 18896 4.142038 GTGTTCCAGTGATACCCAAAGTT 58.858 43.478 0.00 0.00 0.00 2.66
4417 18897 3.137544 TGTGTTCCAGTGATACCCAAAGT 59.862 43.478 0.00 0.00 0.00 2.66
4418 18898 3.750371 TGTGTTCCAGTGATACCCAAAG 58.250 45.455 0.00 0.00 0.00 2.77
4419 18899 3.866703 TGTGTTCCAGTGATACCCAAA 57.133 42.857 0.00 0.00 0.00 3.28
4423 19027 3.472652 TGTGTTGTGTTCCAGTGATACC 58.527 45.455 0.00 0.00 0.00 2.73
4430 19034 5.516339 GTCAGAAAATTGTGTTGTGTTCCAG 59.484 40.000 0.00 0.00 0.00 3.86
4459 19063 1.971167 GCAGCCCCAACATTCGACA 60.971 57.895 0.00 0.00 0.00 4.35
4513 19117 7.624549 ACTGGCTCAACAAAGATCTAATTAGA 58.375 34.615 17.32 17.32 36.65 2.10
4519 19123 4.973168 ACAACTGGCTCAACAAAGATCTA 58.027 39.130 0.00 0.00 0.00 1.98
4521 19125 5.689383 TTACAACTGGCTCAACAAAGATC 57.311 39.130 0.00 0.00 0.00 2.75
4589 19201 2.156117 TGGACATTTCGTTTCGCTTACG 59.844 45.455 0.00 0.00 40.23 3.18
4591 19203 4.529446 GTTTGGACATTTCGTTTCGCTTA 58.471 39.130 0.00 0.00 0.00 3.09
4858 19474 1.578583 GACCGTAAACATCATCCCCG 58.421 55.000 0.00 0.00 0.00 5.73
4859 19475 1.137479 TCGACCGTAAACATCATCCCC 59.863 52.381 0.00 0.00 0.00 4.81
4877 19493 0.859232 CGTGAAGGTGTCCAAACTCG 59.141 55.000 0.00 0.00 0.00 4.18
4909 19525 9.023962 ACAATATCCAATTGTACTGTTCAACAT 57.976 29.630 4.43 0.00 40.12 2.71
4927 19543 2.780993 CACGCGGAAACAACAATATCC 58.219 47.619 12.47 0.00 0.00 2.59
5018 19652 4.479786 ACTTGGGCAGTATTTCTCTCTC 57.520 45.455 0.00 0.00 31.97 3.20
5020 19654 4.327680 ACAACTTGGGCAGTATTTCTCTC 58.672 43.478 0.00 0.00 32.94 3.20
5022 19656 4.072131 TGACAACTTGGGCAGTATTTCTC 58.928 43.478 0.00 0.00 32.94 2.87
5023 19657 3.821033 GTGACAACTTGGGCAGTATTTCT 59.179 43.478 0.00 0.00 32.94 2.52
5024 19658 3.821033 AGTGACAACTTGGGCAGTATTTC 59.179 43.478 0.00 0.00 32.94 2.17
5025 19659 3.832527 AGTGACAACTTGGGCAGTATTT 58.167 40.909 0.00 0.00 32.94 1.40
5026 19660 3.508845 AGTGACAACTTGGGCAGTATT 57.491 42.857 0.00 0.00 32.94 1.89
5027 19661 3.508845 AAGTGACAACTTGGGCAGTAT 57.491 42.857 0.00 0.00 45.12 2.12
5029 19663 3.903208 AAGTGACAACTTGGGCAGT 57.097 47.368 0.00 0.00 45.12 4.40
5074 19708 5.065602 TCTCAGGAATTCGATCATTTGCTTG 59.934 40.000 0.00 0.00 0.00 4.01
5092 19726 5.549347 CATGAGAGGACCATATTTCTCAGG 58.451 45.833 13.90 10.86 46.38 3.86
5099 19733 3.596101 AGGAGCATGAGAGGACCATATT 58.404 45.455 0.00 0.00 0.00 1.28
5111 19745 2.892215 TGCAACAAATGAAGGAGCATGA 59.108 40.909 0.00 0.00 0.00 3.07
5135 19769 6.322712 TGTTGTTTTTAGCTTTGGTACCTCAT 59.677 34.615 14.36 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.