Multiple sequence alignment - TraesCS2A01G587000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G587000 chr2A 100.000 3758 0 0 873 4630 777292597 777288840 0.000000e+00 6940.0
1 TraesCS2A01G587000 chr2A 100.000 449 0 0 1 449 777293469 777293021 0.000000e+00 830.0
2 TraesCS2A01G587000 chr2A 93.064 173 10 1 2512 2684 1111206 1111376 7.690000e-63 252.0
3 TraesCS2A01G587000 chr2B 86.303 1577 105 43 879 2400 779850563 779852083 0.000000e+00 1613.0
4 TraesCS2A01G587000 chr2B 91.279 1032 48 19 3039 4032 779852931 779853958 0.000000e+00 1369.0
5 TraesCS2A01G587000 chr2B 93.182 352 17 2 2512 2856 779852223 779852574 1.150000e-140 510.0
6 TraesCS2A01G587000 chr2B 93.731 335 16 3 4299 4630 779854634 779854966 8.950000e-137 497.0
7 TraesCS2A01G587000 chr2B 93.939 231 6 4 3500 3724 623520161 623519933 4.440000e-90 342.0
8 TraesCS2A01G587000 chr2B 93.243 222 15 0 1 222 300252787 300253008 1.240000e-85 327.0
9 TraesCS2A01G587000 chr2B 87.562 201 18 4 3529 3724 277028324 277028126 4.660000e-55 226.0
10 TraesCS2A01G587000 chr2B 90.551 127 6 6 4204 4330 699185609 699185489 3.710000e-36 163.0
11 TraesCS2A01G587000 chr2B 82.292 192 13 10 255 431 779850333 779850518 3.730000e-31 147.0
12 TraesCS2A01G587000 chr2B 87.302 63 3 4 4083 4143 357921245 357921186 2.990000e-07 67.6
13 TraesCS2A01G587000 chr2D 90.574 1220 67 27 2876 4083 650859143 650860326 0.000000e+00 1572.0
14 TraesCS2A01G587000 chr2D 87.653 1304 85 35 996 2284 650857076 650858318 0.000000e+00 1447.0
15 TraesCS2A01G587000 chr2D 94.648 355 19 0 2512 2866 650858591 650858945 6.770000e-153 551.0
16 TraesCS2A01G587000 chr2D 95.283 212 9 1 4420 4630 650860613 650860824 7.420000e-88 335.0
17 TraesCS2A01G587000 chr2D 83.838 198 13 13 255 438 650856385 650856577 2.220000e-38 171.0
18 TraesCS2A01G587000 chr2D 88.235 68 6 1 4089 4154 36584064 36583997 3.840000e-11 80.5
19 TraesCS2A01G587000 chr2D 97.059 34 1 0 876 909 650856604 650856637 1.800000e-04 58.4
20 TraesCS2A01G587000 chr3B 92.252 413 24 5 3317 3724 168304479 168304888 3.110000e-161 579.0
21 TraesCS2A01G587000 chr3B 91.787 414 25 5 3317 3724 806134202 806134612 6.720000e-158 568.0
22 TraesCS2A01G587000 chr3B 92.793 222 16 0 1 222 745557094 745557315 5.780000e-84 322.0
23 TraesCS2A01G587000 chr3B 93.897 213 13 0 10 222 824304989 824304777 5.780000e-84 322.0
24 TraesCS2A01G587000 chr3B 78.592 355 63 8 2515 2866 332930652 332930308 6.030000e-54 222.0
25 TraesCS2A01G587000 chr3B 87.261 157 17 1 2138 2294 43529932 43529779 4.760000e-40 176.0
26 TraesCS2A01G587000 chr3B 96.907 97 3 0 4207 4303 245305085 245305181 3.710000e-36 163.0
27 TraesCS2A01G587000 chr3B 97.895 95 1 1 4211 4304 283375999 283376093 3.710000e-36 163.0
28 TraesCS2A01G587000 chr3B 95.098 102 1 3 4218 4317 820469778 820469679 1.720000e-34 158.0
29 TraesCS2A01G587000 chr3B 92.857 56 2 1 4083 4136 379353161 379353216 3.840000e-11 80.5
30 TraesCS2A01G587000 chr6B 92.029 414 24 5 3317 3724 600599819 600599409 1.450000e-159 573.0
31 TraesCS2A01G587000 chr6B 92.793 222 16 0 1 222 41109006 41109227 5.780000e-84 322.0
32 TraesCS2A01G587000 chr1B 91.546 414 26 5 3317 3724 470711068 470710658 3.130000e-156 562.0
33 TraesCS2A01G587000 chr1B 92.793 222 16 0 1 222 589132508 589132729 5.780000e-84 322.0
34 TraesCS2A01G587000 chr1B 77.647 340 58 14 1961 2291 8847944 8848274 1.700000e-44 191.0
35 TraesCS2A01G587000 chr6A 91.304 414 27 5 3317 3724 12141420 12141010 1.460000e-154 556.0
36 TraesCS2A01G587000 chr6A 97.143 35 0 1 3846 3879 585198888 585198854 1.800000e-04 58.4
37 TraesCS2A01G587000 chr5B 86.968 376 31 10 1104 1471 430136108 430135743 1.550000e-109 407.0
38 TraesCS2A01G587000 chr5B 93.243 222 15 0 1 222 658466575 658466796 1.240000e-85 327.0
39 TraesCS2A01G587000 chr5B 97.143 35 0 1 3846 3879 458149184 458149150 1.800000e-04 58.4
40 TraesCS2A01G587000 chr7B 93.243 222 15 0 1 222 657535613 657535834 1.240000e-85 327.0
41 TraesCS2A01G587000 chr7B 92.793 222 16 0 1 222 418863985 418864206 5.780000e-84 322.0
42 TraesCS2A01G587000 chr7B 92.486 173 11 1 2512 2684 693287439 693287609 3.580000e-61 246.0
43 TraesCS2A01G587000 chr7B 77.811 338 58 13 1961 2290 712626744 712626416 4.730000e-45 193.0
44 TraesCS2A01G587000 chr7B 87.117 163 18 1 2129 2291 693287002 693287161 1.020000e-41 182.0
45 TraesCS2A01G587000 chr7B 98.936 94 1 0 4209 4302 107564808 107564715 7.970000e-38 169.0
46 TraesCS2A01G587000 chr7B 95.098 102 3 2 4213 4312 506627133 506627032 4.790000e-35 159.0
47 TraesCS2A01G587000 chr4B 92.793 222 16 0 1 222 665293874 665294095 5.780000e-84 322.0
48 TraesCS2A01G587000 chr4B 85.965 57 8 0 4099 4155 179835220 179835164 1.390000e-05 62.1
49 TraesCS2A01G587000 chr3A 93.642 173 9 1 2512 2684 48642194 48642024 1.650000e-64 257.0
50 TraesCS2A01G587000 chr3A 78.363 342 57 13 1961 2294 48642801 48642469 6.070000e-49 206.0
51 TraesCS2A01G587000 chr3A 79.630 162 26 7 2121 2280 275290237 275290393 4.900000e-20 110.0
52 TraesCS2A01G587000 chr3A 82.143 84 6 1 3846 3920 119479832 119479915 3.870000e-06 63.9
53 TraesCS2A01G587000 chr3A 85.294 68 2 3 3846 3912 569420736 569420676 3.870000e-06 63.9
54 TraesCS2A01G587000 chr7A 93.064 173 10 1 2512 2684 714818548 714818718 7.690000e-63 252.0
55 TraesCS2A01G587000 chr7A 96.939 98 2 1 4205 4302 661299221 661299125 3.710000e-36 163.0
56 TraesCS2A01G587000 chr7A 97.872 94 1 1 4210 4302 301100517 301100424 1.330000e-35 161.0
57 TraesCS2A01G587000 chr1D 93.064 173 10 1 2512 2684 408892281 408892451 7.690000e-63 252.0
58 TraesCS2A01G587000 chr1D 77.971 345 57 16 1961 2296 408891675 408892009 1.020000e-46 198.0
59 TraesCS2A01G587000 chr1D 92.982 114 8 0 1104 1217 408890862 408890975 2.870000e-37 167.0
60 TraesCS2A01G587000 chr3D 78.652 356 61 8 2515 2866 210622251 210621907 6.030000e-54 222.0
61 TraesCS2A01G587000 chr3D 78.035 346 54 16 1961 2296 577374669 577375002 1.020000e-46 198.0
62 TraesCS2A01G587000 chr3D 92.105 114 9 0 1104 1217 577373853 577373966 1.330000e-35 161.0
63 TraesCS2A01G587000 chr3D 78.363 171 32 5 2121 2290 210622791 210622625 6.340000e-19 106.0
64 TraesCS2A01G587000 chr3D 89.333 75 6 1 4083 4155 38408354 38408280 4.930000e-15 93.5
65 TraesCS2A01G587000 chr4A 95.876 97 4 0 4207 4303 544888297 544888201 1.720000e-34 158.0
66 TraesCS2A01G587000 chrUn 97.143 35 0 1 3846 3879 331535928 331535894 1.800000e-04 58.4
67 TraesCS2A01G587000 chrUn 97.143 35 0 1 3846 3879 331539267 331539301 1.800000e-04 58.4
68 TraesCS2A01G587000 chrUn 97.143 35 0 1 3846 3879 413738607 413738573 1.800000e-04 58.4
69 TraesCS2A01G587000 chr7D 100.000 31 0 0 3846 3876 135361524 135361494 1.800000e-04 58.4
70 TraesCS2A01G587000 chr4D 100.000 28 0 0 3896 3923 505657713 505657686 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G587000 chr2A 777288840 777293469 4629 True 3885.000000 6940 100.000000 1 4630 2 chr2A.!!$R1 4629
1 TraesCS2A01G587000 chr2B 779850333 779854966 4633 False 827.200000 1613 89.357400 255 4630 5 chr2B.!!$F2 4375
2 TraesCS2A01G587000 chr2D 650856385 650860824 4439 False 689.066667 1572 91.509167 255 4630 6 chr2D.!!$F1 4375
3 TraesCS2A01G587000 chr7B 693287002 693287609 607 False 214.000000 246 89.801500 2129 2684 2 chr7B.!!$F3 555
4 TraesCS2A01G587000 chr3A 48642024 48642801 777 True 231.500000 257 86.002500 1961 2684 2 chr3A.!!$R2 723
5 TraesCS2A01G587000 chr1D 408890862 408892451 1589 False 205.666667 252 88.005667 1104 2684 3 chr1D.!!$F1 1580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.095589 CTCCTCACTCGAGTTCGACG 59.904 60.0 17.26 4.2 44.22 5.12 F
177 178 0.107017 ATATGCAGCTTTGCGGACCT 60.107 50.0 0.00 0.0 37.69 3.85 F
194 195 0.178992 CCTCCAAGGTGGCTCACAAA 60.179 55.0 7.49 0.0 37.47 2.83 F
1449 1826 0.033011 AGACAGACAGATACCCGCCT 60.033 55.0 0.00 0.0 0.00 5.52 F
2115 2779 0.535780 TCTGGTGTCTTGCTTGCCTG 60.536 55.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 1807 0.033011 AGGCGGGTATCTGTCTGTCT 60.033 55.0 0.00 0.00 32.06 3.41 R
1433 1810 0.103208 GTGAGGCGGGTATCTGTCTG 59.897 60.0 0.00 0.00 33.72 3.51 R
1556 1933 0.322636 TCGCTCTCCCTCTCTCGTTT 60.323 55.0 0.00 0.00 0.00 3.60 R
2867 3669 0.447801 GACTACGGGTTGCAAGCATG 59.552 55.0 28.22 21.58 0.00 4.06 R
3795 4929 0.606604 ATCGACCAAGCAACTACCGT 59.393 50.0 0.00 0.00 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.059448 CATGTAATAACCAACATGGCAAAAC 57.941 36.000 7.41 0.00 45.94 2.43
26 27 6.412362 TGTAATAACCAACATGGCAAAACT 57.588 33.333 0.00 0.00 42.67 2.66
27 28 6.219473 TGTAATAACCAACATGGCAAAACTG 58.781 36.000 0.00 0.00 42.67 3.16
28 29 5.543507 AATAACCAACATGGCAAAACTGA 57.456 34.783 0.00 0.00 42.67 3.41
29 30 3.902881 AACCAACATGGCAAAACTGAA 57.097 38.095 0.00 0.00 42.67 3.02
30 31 3.902881 ACCAACATGGCAAAACTGAAA 57.097 38.095 0.00 0.00 42.67 2.69
31 32 4.213564 ACCAACATGGCAAAACTGAAAA 57.786 36.364 0.00 0.00 42.67 2.29
32 33 4.190772 ACCAACATGGCAAAACTGAAAAG 58.809 39.130 0.00 0.00 42.67 2.27
33 34 4.081198 ACCAACATGGCAAAACTGAAAAGA 60.081 37.500 0.00 0.00 42.67 2.52
34 35 5.058490 CCAACATGGCAAAACTGAAAAGAT 58.942 37.500 0.00 0.00 0.00 2.40
35 36 6.183360 ACCAACATGGCAAAACTGAAAAGATA 60.183 34.615 0.00 0.00 42.67 1.98
36 37 6.366877 CCAACATGGCAAAACTGAAAAGATAG 59.633 38.462 0.00 0.00 0.00 2.08
37 38 5.473039 ACATGGCAAAACTGAAAAGATAGC 58.527 37.500 0.00 0.00 0.00 2.97
38 39 5.010922 ACATGGCAAAACTGAAAAGATAGCA 59.989 36.000 0.00 0.00 0.00 3.49
39 40 5.528043 TGGCAAAACTGAAAAGATAGCAA 57.472 34.783 0.00 0.00 0.00 3.91
40 41 5.911752 TGGCAAAACTGAAAAGATAGCAAA 58.088 33.333 0.00 0.00 0.00 3.68
41 42 6.344500 TGGCAAAACTGAAAAGATAGCAAAA 58.656 32.000 0.00 0.00 0.00 2.44
42 43 6.257630 TGGCAAAACTGAAAAGATAGCAAAAC 59.742 34.615 0.00 0.00 0.00 2.43
43 44 6.257630 GGCAAAACTGAAAAGATAGCAAAACA 59.742 34.615 0.00 0.00 0.00 2.83
44 45 7.041848 GGCAAAACTGAAAAGATAGCAAAACAT 60.042 33.333 0.00 0.00 0.00 2.71
45 46 8.006027 GCAAAACTGAAAAGATAGCAAAACATC 58.994 33.333 0.00 0.00 0.00 3.06
46 47 9.252962 CAAAACTGAAAAGATAGCAAAACATCT 57.747 29.630 0.00 0.00 32.85 2.90
47 48 9.468532 AAAACTGAAAAGATAGCAAAACATCTC 57.531 29.630 0.00 0.00 31.10 2.75
48 49 7.992754 ACTGAAAAGATAGCAAAACATCTCT 57.007 32.000 0.00 0.00 31.10 3.10
49 50 7.814642 ACTGAAAAGATAGCAAAACATCTCTG 58.185 34.615 0.00 0.00 31.10 3.35
50 51 7.663081 ACTGAAAAGATAGCAAAACATCTCTGA 59.337 33.333 0.00 0.00 31.10 3.27
51 52 8.037382 TGAAAAGATAGCAAAACATCTCTGAG 57.963 34.615 0.00 0.00 31.10 3.35
52 53 6.434018 AAAGATAGCAAAACATCTCTGAGC 57.566 37.500 0.00 0.00 31.10 4.26
53 54 5.356291 AGATAGCAAAACATCTCTGAGCT 57.644 39.130 0.00 0.00 34.84 4.09
54 55 5.743117 AGATAGCAAAACATCTCTGAGCTT 58.257 37.500 0.00 0.00 32.49 3.74
55 56 5.585445 AGATAGCAAAACATCTCTGAGCTTG 59.415 40.000 0.00 3.05 32.49 4.01
56 57 3.748083 AGCAAAACATCTCTGAGCTTGA 58.252 40.909 12.47 0.00 0.00 3.02
57 58 3.501445 AGCAAAACATCTCTGAGCTTGAC 59.499 43.478 12.47 3.68 0.00 3.18
58 59 3.251729 GCAAAACATCTCTGAGCTTGACA 59.748 43.478 12.47 0.00 0.00 3.58
59 60 4.613167 GCAAAACATCTCTGAGCTTGACAG 60.613 45.833 12.47 0.00 36.80 3.51
68 69 4.389576 GCTTGACAGCAACGCCCG 62.390 66.667 0.00 0.00 46.49 6.13
69 70 2.972505 CTTGACAGCAACGCCCGT 60.973 61.111 0.00 0.00 0.00 5.28
70 71 2.954753 CTTGACAGCAACGCCCGTC 61.955 63.158 0.00 0.00 33.76 4.79
71 72 3.741830 TTGACAGCAACGCCCGTCA 62.742 57.895 5.09 5.09 38.89 4.35
72 73 3.712881 GACAGCAACGCCCGTCAC 61.713 66.667 0.00 0.00 33.49 3.67
74 75 4.988598 CAGCAACGCCCGTCACCT 62.989 66.667 0.00 0.00 0.00 4.00
75 76 4.988598 AGCAACGCCCGTCACCTG 62.989 66.667 0.00 0.00 0.00 4.00
93 94 4.704833 CCTCCGGCACCACCACAG 62.705 72.222 0.00 0.00 39.03 3.66
100 101 3.289834 CACCACCACAGCAGCCAC 61.290 66.667 0.00 0.00 0.00 5.01
101 102 3.807839 ACCACCACAGCAGCCACA 61.808 61.111 0.00 0.00 0.00 4.17
102 103 2.981909 CCACCACAGCAGCCACAG 60.982 66.667 0.00 0.00 0.00 3.66
103 104 2.111669 CACCACAGCAGCCACAGA 59.888 61.111 0.00 0.00 0.00 3.41
104 105 1.526686 CACCACAGCAGCCACAGAA 60.527 57.895 0.00 0.00 0.00 3.02
105 106 1.228063 ACCACAGCAGCCACAGAAG 60.228 57.895 0.00 0.00 0.00 2.85
106 107 1.071987 CCACAGCAGCCACAGAAGA 59.928 57.895 0.00 0.00 0.00 2.87
107 108 0.535780 CCACAGCAGCCACAGAAGAA 60.536 55.000 0.00 0.00 0.00 2.52
108 109 1.311859 CACAGCAGCCACAGAAGAAA 58.688 50.000 0.00 0.00 0.00 2.52
109 110 1.677576 CACAGCAGCCACAGAAGAAAA 59.322 47.619 0.00 0.00 0.00 2.29
110 111 1.952296 ACAGCAGCCACAGAAGAAAAG 59.048 47.619 0.00 0.00 0.00 2.27
111 112 2.224606 CAGCAGCCACAGAAGAAAAGA 58.775 47.619 0.00 0.00 0.00 2.52
112 113 2.620115 CAGCAGCCACAGAAGAAAAGAA 59.380 45.455 0.00 0.00 0.00 2.52
113 114 3.255149 CAGCAGCCACAGAAGAAAAGAAT 59.745 43.478 0.00 0.00 0.00 2.40
114 115 3.255149 AGCAGCCACAGAAGAAAAGAATG 59.745 43.478 0.00 0.00 0.00 2.67
115 116 3.254166 GCAGCCACAGAAGAAAAGAATGA 59.746 43.478 0.00 0.00 0.00 2.57
116 117 4.791974 CAGCCACAGAAGAAAAGAATGAC 58.208 43.478 0.00 0.00 0.00 3.06
117 118 3.499918 AGCCACAGAAGAAAAGAATGACG 59.500 43.478 0.00 0.00 0.00 4.35
118 119 3.365364 GCCACAGAAGAAAAGAATGACGG 60.365 47.826 0.00 0.00 0.00 4.79
119 120 3.189287 CCACAGAAGAAAAGAATGACGGG 59.811 47.826 0.00 0.00 0.00 5.28
120 121 3.815401 CACAGAAGAAAAGAATGACGGGT 59.185 43.478 0.00 0.00 0.00 5.28
121 122 4.065789 ACAGAAGAAAAGAATGACGGGTC 58.934 43.478 0.00 0.00 0.00 4.46
122 123 4.065088 CAGAAGAAAAGAATGACGGGTCA 58.935 43.478 3.69 3.69 44.59 4.02
123 124 4.065789 AGAAGAAAAGAATGACGGGTCAC 58.934 43.478 3.22 0.00 43.11 3.67
124 125 2.779506 AGAAAAGAATGACGGGTCACC 58.220 47.619 3.22 0.00 43.11 4.02
125 126 2.372172 AGAAAAGAATGACGGGTCACCT 59.628 45.455 3.22 2.02 43.11 4.00
126 127 2.474410 AAAGAATGACGGGTCACCTC 57.526 50.000 3.22 4.38 43.11 3.85
127 128 0.613777 AAGAATGACGGGTCACCTCC 59.386 55.000 3.22 0.00 43.11 4.30
128 129 0.252284 AGAATGACGGGTCACCTCCT 60.252 55.000 3.22 0.00 43.11 3.69
129 130 0.175989 GAATGACGGGTCACCTCCTC 59.824 60.000 3.22 0.00 43.11 3.71
130 131 0.544357 AATGACGGGTCACCTCCTCA 60.544 55.000 3.22 0.00 43.11 3.86
131 132 1.258445 ATGACGGGTCACCTCCTCAC 61.258 60.000 3.22 0.00 43.11 3.51
132 133 1.606889 GACGGGTCACCTCCTCACT 60.607 63.158 0.00 0.00 33.28 3.41
133 134 1.596895 GACGGGTCACCTCCTCACTC 61.597 65.000 0.00 0.00 33.28 3.51
134 135 2.701780 CGGGTCACCTCCTCACTCG 61.702 68.421 0.00 0.00 33.28 4.18
135 136 1.304217 GGGTCACCTCCTCACTCGA 60.304 63.158 0.00 0.00 0.00 4.04
136 137 1.316706 GGGTCACCTCCTCACTCGAG 61.317 65.000 11.84 11.84 39.16 4.04
137 138 0.609681 GGTCACCTCCTCACTCGAGT 60.610 60.000 13.58 13.58 37.59 4.18
138 139 1.249407 GTCACCTCCTCACTCGAGTT 58.751 55.000 17.26 0.00 37.59 3.01
139 140 1.200484 GTCACCTCCTCACTCGAGTTC 59.800 57.143 17.26 0.00 37.59 3.01
140 141 0.169230 CACCTCCTCACTCGAGTTCG 59.831 60.000 17.26 9.61 37.59 3.95
142 143 0.448593 CCTCCTCACTCGAGTTCGAC 59.551 60.000 17.26 0.00 44.22 4.20
143 144 0.095589 CTCCTCACTCGAGTTCGACG 59.904 60.000 17.26 4.20 44.22 5.12
144 145 1.512310 CCTCACTCGAGTTCGACGC 60.512 63.158 17.26 0.00 44.22 5.19
145 146 1.859564 CTCACTCGAGTTCGACGCG 60.860 63.158 17.26 3.53 44.22 6.01
146 147 2.870161 CACTCGAGTTCGACGCGG 60.870 66.667 17.26 0.00 44.22 6.46
147 148 4.755614 ACTCGAGTTCGACGCGGC 62.756 66.667 13.58 6.41 44.22 6.53
148 149 4.462417 CTCGAGTTCGACGCGGCT 62.462 66.667 11.76 0.00 44.22 5.52
149 150 4.456253 TCGAGTTCGACGCGGCTC 62.456 66.667 11.76 8.49 44.22 4.70
151 152 4.415332 GAGTTCGACGCGGCTCCA 62.415 66.667 11.76 0.00 0.00 3.86
152 153 3.701604 GAGTTCGACGCGGCTCCAT 62.702 63.158 11.76 0.00 0.00 3.41
153 154 3.255379 GTTCGACGCGGCTCCATC 61.255 66.667 11.76 0.00 0.00 3.51
154 155 4.847516 TTCGACGCGGCTCCATCG 62.848 66.667 11.76 9.57 35.91 3.84
162 163 2.746997 CGGCTCCATCGCTGATATG 58.253 57.895 0.00 0.00 38.57 1.78
163 164 1.357258 CGGCTCCATCGCTGATATGC 61.357 60.000 0.00 0.00 38.57 3.14
164 165 0.321034 GGCTCCATCGCTGATATGCA 60.321 55.000 0.00 0.00 0.00 3.96
173 174 3.839654 CTGATATGCAGCTTTGCGG 57.160 52.632 0.00 0.00 37.90 5.69
174 175 1.302366 CTGATATGCAGCTTTGCGGA 58.698 50.000 0.00 0.00 37.90 5.54
175 176 1.003116 CTGATATGCAGCTTTGCGGAC 60.003 52.381 0.00 0.00 37.90 4.79
176 177 0.308993 GATATGCAGCTTTGCGGACC 59.691 55.000 0.00 0.00 37.69 4.46
177 178 0.107017 ATATGCAGCTTTGCGGACCT 60.107 50.000 0.00 0.00 37.69 3.85
178 179 0.744414 TATGCAGCTTTGCGGACCTC 60.744 55.000 0.00 0.00 37.69 3.85
179 180 3.435186 GCAGCTTTGCGGACCTCC 61.435 66.667 0.00 0.00 0.00 4.30
180 181 2.032528 CAGCTTTGCGGACCTCCA 59.967 61.111 0.00 0.00 35.14 3.86
181 182 1.600636 CAGCTTTGCGGACCTCCAA 60.601 57.895 0.00 0.00 35.14 3.53
182 183 1.302832 AGCTTTGCGGACCTCCAAG 60.303 57.895 0.00 0.00 35.14 3.61
183 184 2.335712 GCTTTGCGGACCTCCAAGG 61.336 63.158 0.00 0.00 42.49 3.61
192 193 3.160585 CCTCCAAGGTGGCTCACA 58.839 61.111 7.49 0.00 37.47 3.58
193 194 1.455849 CCTCCAAGGTGGCTCACAA 59.544 57.895 7.49 0.00 37.47 3.33
194 195 0.178992 CCTCCAAGGTGGCTCACAAA 60.179 55.000 7.49 0.00 37.47 2.83
195 196 1.691196 CTCCAAGGTGGCTCACAAAA 58.309 50.000 7.49 0.00 37.47 2.44
196 197 2.031120 CTCCAAGGTGGCTCACAAAAA 58.969 47.619 7.49 0.00 37.47 1.94
212 213 2.837532 AAAAATGAAGCCATTGCCGT 57.162 40.000 0.00 0.00 41.84 5.68
213 214 2.837532 AAAATGAAGCCATTGCCGTT 57.162 40.000 0.00 0.00 41.84 4.44
214 215 3.951775 AAAATGAAGCCATTGCCGTTA 57.048 38.095 0.00 0.00 41.84 3.18
215 216 3.951775 AAATGAAGCCATTGCCGTTAA 57.048 38.095 0.00 0.00 41.84 2.01
216 217 3.951775 AATGAAGCCATTGCCGTTAAA 57.048 38.095 0.00 0.00 41.18 1.52
217 218 2.715737 TGAAGCCATTGCCGTTAAAC 57.284 45.000 0.00 0.00 38.69 2.01
218 219 1.068885 TGAAGCCATTGCCGTTAAACG 60.069 47.619 0.00 0.00 42.11 3.60
219 220 1.198178 GAAGCCATTGCCGTTAAACGA 59.802 47.619 0.00 0.00 42.28 3.85
220 221 1.240256 AGCCATTGCCGTTAAACGAA 58.760 45.000 0.00 0.00 42.28 3.85
221 222 1.816224 AGCCATTGCCGTTAAACGAAT 59.184 42.857 0.00 0.00 42.28 3.34
222 223 3.011119 AGCCATTGCCGTTAAACGAATA 58.989 40.909 0.00 0.00 42.28 1.75
223 224 3.103007 GCCATTGCCGTTAAACGAATAC 58.897 45.455 0.00 0.00 46.05 1.89
224 225 3.426426 GCCATTGCCGTTAAACGAATACA 60.426 43.478 0.00 0.00 46.05 2.29
225 226 4.724303 CCATTGCCGTTAAACGAATACAA 58.276 39.130 0.00 0.00 46.05 2.41
226 227 4.791163 CCATTGCCGTTAAACGAATACAAG 59.209 41.667 0.00 0.00 46.05 3.16
227 228 5.391097 CCATTGCCGTTAAACGAATACAAGA 60.391 40.000 0.00 0.00 46.05 3.02
228 229 4.914312 TGCCGTTAAACGAATACAAGAG 57.086 40.909 0.00 0.00 46.05 2.85
229 230 3.680937 TGCCGTTAAACGAATACAAGAGG 59.319 43.478 0.00 0.00 46.05 3.69
230 231 3.484721 GCCGTTAAACGAATACAAGAGGC 60.485 47.826 0.00 0.00 46.05 4.70
231 232 3.241868 CCGTTAAACGAATACAAGAGGCG 60.242 47.826 0.00 0.00 46.05 5.52
232 233 3.241868 CGTTAAACGAATACAAGAGGCGG 60.242 47.826 0.00 0.00 46.05 6.13
233 234 1.084289 AAACGAATACAAGAGGCGGC 58.916 50.000 0.00 0.00 0.00 6.53
234 235 0.743345 AACGAATACAAGAGGCGGCC 60.743 55.000 12.11 12.11 0.00 6.13
235 236 2.237751 CGAATACAAGAGGCGGCCG 61.238 63.158 24.05 24.05 0.00 6.13
236 237 1.153429 GAATACAAGAGGCGGCCGT 60.153 57.895 28.70 7.71 0.00 5.68
237 238 1.429148 GAATACAAGAGGCGGCCGTG 61.429 60.000 28.70 19.09 0.00 4.94
238 239 1.895020 AATACAAGAGGCGGCCGTGA 61.895 55.000 28.70 7.11 0.00 4.35
239 240 1.895020 ATACAAGAGGCGGCCGTGAA 61.895 55.000 28.70 4.26 0.00 3.18
240 241 2.501223 TACAAGAGGCGGCCGTGAAG 62.501 60.000 28.70 14.39 0.00 3.02
251 252 2.939460 GCCGTGAAGCCATGTAAAAT 57.061 45.000 0.00 0.00 0.00 1.82
253 254 4.364415 GCCGTGAAGCCATGTAAAATAA 57.636 40.909 0.00 0.00 0.00 1.40
291 292 6.492007 ACGGATATATGGAGTACGTACAAG 57.508 41.667 26.55 6.76 0.00 3.16
292 293 6.000219 ACGGATATATGGAGTACGTACAAGT 59.000 40.000 26.55 7.09 0.00 3.16
293 294 7.161404 ACGGATATATGGAGTACGTACAAGTA 58.839 38.462 26.55 13.84 0.00 2.24
294 295 7.118390 ACGGATATATGGAGTACGTACAAGTAC 59.882 40.741 26.55 8.52 45.31 2.73
295 296 7.118245 CGGATATATGGAGTACGTACAAGTACA 59.882 40.741 26.55 14.00 46.85 2.90
296 297 8.786898 GGATATATGGAGTACGTACAAGTACAA 58.213 37.037 26.55 8.36 46.85 2.41
304 309 7.225523 AGTACGTACAAGTACAAACAAACAG 57.774 36.000 26.55 0.00 46.85 3.16
321 326 0.817654 CAGCTCCACATCTACGGTCA 59.182 55.000 0.00 0.00 0.00 4.02
331 336 7.207383 TCCACATCTACGGTCAACATTATTAG 58.793 38.462 0.00 0.00 0.00 1.73
333 338 7.169308 CCACATCTACGGTCAACATTATTAGAC 59.831 40.741 0.00 0.00 0.00 2.59
335 340 8.136165 ACATCTACGGTCAACATTATTAGACTC 58.864 37.037 0.00 0.00 0.00 3.36
338 358 5.338365 ACGGTCAACATTATTAGACTCGTC 58.662 41.667 0.00 0.00 34.95 4.20
355 375 1.135373 CGTCAGTAACCATCGCTGTCT 60.135 52.381 0.00 0.00 0.00 3.41
356 376 2.263077 GTCAGTAACCATCGCTGTCTG 58.737 52.381 0.00 0.00 0.00 3.51
412 432 2.885861 GAGCCGTCACGTCCATCT 59.114 61.111 0.00 0.00 0.00 2.90
420 440 4.148825 ACGTCCATCTGCCTCCGC 62.149 66.667 0.00 0.00 0.00 5.54
421 441 4.899239 CGTCCATCTGCCTCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
422 442 4.554036 GTCCATCTGCCTCCGCCC 62.554 72.222 0.00 0.00 0.00 6.13
919 939 0.400594 CTTTCTCTTCCCCACCCGTT 59.599 55.000 0.00 0.00 0.00 4.44
1017 1383 4.760047 GCCGCTCCCGCTCAAGAA 62.760 66.667 0.00 0.00 0.00 2.52
1018 1384 2.510238 CCGCTCCCGCTCAAGAAG 60.510 66.667 0.00 0.00 0.00 2.85
1148 1522 4.344865 TCAAGGCGGCCAACTCCC 62.345 66.667 23.09 0.00 0.00 4.30
1301 1675 1.953231 CTCCACAGGCAGATCTCGCA 61.953 60.000 15.83 0.00 0.00 5.10
1304 1678 1.495878 CACAGGCAGATCTCGCATAC 58.504 55.000 15.83 2.97 0.00 2.39
1306 1680 0.390492 CAGGCAGATCTCGCATACCA 59.610 55.000 15.83 0.00 0.00 3.25
1350 1727 3.136791 GCCCAGCTGCTTACTGCC 61.137 66.667 8.66 0.00 41.37 4.85
1359 1736 1.312371 TGCTTACTGCCGGATTTGCC 61.312 55.000 5.05 0.00 42.00 4.52
1432 1809 4.785950 CGAAATCCGTCGCTCAGA 57.214 55.556 0.00 0.00 33.66 3.27
1433 1810 2.279469 CGAAATCCGTCGCTCAGAC 58.721 57.895 0.00 0.00 46.16 3.51
1449 1826 0.033011 AGACAGACAGATACCCGCCT 60.033 55.000 0.00 0.00 0.00 5.52
1473 1850 2.106332 CCTCCGACCGAATTCCCG 59.894 66.667 0.00 1.46 0.00 5.14
1491 1868 2.325082 GGTGAAATGCGCGTGTCCT 61.325 57.895 17.14 0.00 0.00 3.85
1494 1871 2.965147 GAAATGCGCGTGTCCTGCA 61.965 57.895 8.73 0.00 43.67 4.41
1546 1923 1.696884 GAGGGATCAGGATCAGTTCCC 59.303 57.143 18.92 18.92 46.81 3.97
1551 1928 1.198713 TCAGGATCAGTTCCCTGCTC 58.801 55.000 0.00 0.00 46.81 4.26
1556 1933 0.976641 ATCAGTTCCCTGCTCGAACA 59.023 50.000 11.81 0.00 41.72 3.18
1663 2041 4.101448 GGGCGGGACACTCAGCAT 62.101 66.667 0.00 0.00 0.00 3.79
1710 2091 3.000773 CAGTGACGAAAACAAAAAGCAGC 60.001 43.478 0.00 0.00 0.00 5.25
1714 2095 1.780860 CGAAAACAAAAAGCAGCGGAG 59.219 47.619 0.00 0.00 0.00 4.63
1718 2099 1.172812 ACAAAAAGCAGCGGAGGGAC 61.173 55.000 0.00 0.00 0.00 4.46
1768 2149 4.856801 ATTGCGCCGCCCCTACAG 62.857 66.667 6.63 0.00 0.00 2.74
1849 2230 7.013274 CCAAACGAAAAGGATGGATGTATATGT 59.987 37.037 0.00 0.00 33.19 2.29
1878 2259 2.993471 GCGGTTGATTGGTGGGCTG 61.993 63.158 0.00 0.00 0.00 4.85
1949 2588 2.420058 ATCGCTTTCCCCAACTTAGG 57.580 50.000 0.00 0.00 0.00 2.69
1954 2593 0.891904 TTTCCCCAACTTAGGCACGC 60.892 55.000 0.00 0.00 0.00 5.34
1999 2638 4.351192 CTTTGCTTTGCTGTTAAGACGTT 58.649 39.130 0.00 0.00 0.00 3.99
2062 2712 4.799564 TTTATGTTGGGCCTGACAAATC 57.200 40.909 15.42 0.00 0.00 2.17
2076 2740 3.025978 GACAAATCAGGAATCCATGCCA 58.974 45.455 0.61 0.00 0.00 4.92
2113 2777 1.032014 TTTCTGGTGTCTTGCTTGCC 58.968 50.000 0.00 0.00 0.00 4.52
2115 2779 0.535780 TCTGGTGTCTTGCTTGCCTG 60.536 55.000 0.00 0.00 0.00 4.85
2117 2781 1.102809 TGGTGTCTTGCTTGCCTGTG 61.103 55.000 0.00 0.00 0.00 3.66
2118 2782 0.819259 GGTGTCTTGCTTGCCTGTGA 60.819 55.000 0.00 0.00 0.00 3.58
2119 2783 1.024271 GTGTCTTGCTTGCCTGTGAA 58.976 50.000 0.00 0.00 0.00 3.18
2120 2784 1.405105 GTGTCTTGCTTGCCTGTGAAA 59.595 47.619 0.00 0.00 0.00 2.69
2121 2785 2.035066 GTGTCTTGCTTGCCTGTGAAAT 59.965 45.455 0.00 0.00 0.00 2.17
2130 2820 8.607441 TTGCTTGCCTGTGAAATATATACTAG 57.393 34.615 0.00 0.00 0.00 2.57
2135 2825 9.653287 TTGCCTGTGAAATATATACTAGTATGC 57.347 33.333 23.09 13.97 0.00 3.14
2157 2847 5.531659 TGCAATGGCTGTTTTGATTGAAAAT 59.468 32.000 0.00 0.00 41.91 1.82
2171 2861 7.048000 TGATTGAAAATAAATCGCTTGTTGC 57.952 32.000 0.00 0.00 36.93 4.17
2242 2932 4.662961 TGCTCGGGCCATATCGCG 62.663 66.667 3.94 0.00 42.68 5.87
2296 2986 1.666189 GTATCCTTGAAAGCGGCTCAC 59.334 52.381 1.45 0.86 0.00 3.51
2310 3036 2.432456 TCACGCGGCACTTGCTAG 60.432 61.111 12.47 0.00 41.70 3.42
2342 3068 4.420522 AAATTCCTCAAAGCCTTTTGCA 57.579 36.364 0.00 0.00 42.71 4.08
2344 3070 3.665745 TTCCTCAAAGCCTTTTGCATC 57.334 42.857 0.00 0.00 42.71 3.91
2409 3137 7.397892 TGGTATCTCCATTTATTCGCAAAAA 57.602 32.000 0.00 0.00 41.93 1.94
2482 3217 4.518249 AGGAAATTGCTAGCAGGTAAGTC 58.482 43.478 18.45 10.30 0.00 3.01
2492 3227 2.093447 AGCAGGTAAGTCTCGAAATGGG 60.093 50.000 0.00 0.00 0.00 4.00
2518 3313 6.156256 ACTGTTGGCTCCTAATAATACTGTGA 59.844 38.462 0.00 0.00 0.00 3.58
2526 3321 5.057149 CCTAATAATACTGTGACCTGGTGC 58.943 45.833 2.82 0.00 0.00 5.01
2577 3372 6.667007 TGTATGTAGCACATGATCTTTGTG 57.333 37.500 19.12 19.12 45.74 3.33
2697 3496 9.482627 ACTTGCTATTTCTAATATGTCAGCTAC 57.517 33.333 0.00 0.00 0.00 3.58
2724 3526 5.715439 TTTGTGATGGTCTGATAATCCCT 57.285 39.130 1.56 0.00 0.00 4.20
2806 3608 7.188834 TCGTGAGATCAAATTTTGACATATGC 58.811 34.615 13.80 3.45 43.48 3.14
2845 3647 2.587247 GGTGGCTGCTCAGGTGAGA 61.587 63.158 11.29 0.00 44.74 3.27
2848 3650 0.833409 TGGCTGCTCAGGTGAGAGAA 60.833 55.000 11.29 0.00 44.74 2.87
2867 3669 6.311055 GAGAATCTATGCAATGAAACTCCC 57.689 41.667 0.00 0.00 0.00 4.30
2871 3861 2.973694 ATGCAATGAAACTCCCATGC 57.026 45.000 0.00 0.00 0.00 4.06
2873 3863 2.250031 TGCAATGAAACTCCCATGCTT 58.750 42.857 0.00 0.00 0.00 3.91
2880 3870 1.187567 AACTCCCATGCTTGCAACCC 61.188 55.000 0.00 0.00 0.00 4.11
2886 3876 0.447801 CATGCTTGCAACCCGTAGTC 59.552 55.000 0.00 0.00 0.00 2.59
2972 3962 4.101430 ACCTTTCACATTTCTGCATTTGGT 59.899 37.500 0.00 0.00 0.00 3.67
3009 4127 8.349983 TGTACTTTTCAGAGAATAACTTTTGGC 58.650 33.333 0.00 0.00 0.00 4.52
3264 4384 8.311395 AGACAAGGTGAGATGTTTATCTATCA 57.689 34.615 0.00 0.00 43.63 2.15
3300 4426 2.289195 CCCTCTTTACGTTGGTGCACTA 60.289 50.000 17.98 8.10 0.00 2.74
3362 4488 4.261825 CCTTTCAGGCCAACGAACAATAAA 60.262 41.667 5.01 0.00 0.00 1.40
3429 4555 1.364678 TCCTGATCCCTGAGGGTTACA 59.635 52.381 18.83 14.44 44.74 2.41
3443 4569 2.345760 TTACAGCCGACCCGAGGAC 61.346 63.158 0.00 0.00 0.00 3.85
3456 4582 3.322254 ACCCGAGGACATGATGATACTTC 59.678 47.826 0.00 0.00 0.00 3.01
3462 4588 6.238869 CGAGGACATGATGATACTTCTTCTCA 60.239 42.308 0.00 0.00 0.00 3.27
3486 4612 8.053355 TCAGAAGTAGTAGTGAGGATTGATACA 58.947 37.037 0.00 0.00 0.00 2.29
3572 4698 4.163078 AGCATGTGACTAATCTTACAGCCT 59.837 41.667 0.00 0.00 0.00 4.58
3584 4717 3.643320 TCTTACAGCCTCCTGATGTATGG 59.357 47.826 0.00 0.00 41.77 2.74
3587 4720 1.983691 CAGCCTCCTGATGTATGGGAT 59.016 52.381 0.00 0.00 41.77 3.85
3651 4785 7.055667 TGCAATGTCTTACCCAATACAAAAA 57.944 32.000 0.00 0.00 0.00 1.94
3652 4786 7.151308 TGCAATGTCTTACCCAATACAAAAAG 58.849 34.615 0.00 0.00 0.00 2.27
3653 4787 6.589907 GCAATGTCTTACCCAATACAAAAAGG 59.410 38.462 0.00 0.00 0.00 3.11
3688 4822 8.058667 TGATAGTCTGAATGTCATGCATTTTT 57.941 30.769 14.00 0.00 46.90 1.94
3700 4834 9.926158 ATGTCATGCATTTTTATGTTTCTGTTA 57.074 25.926 0.00 0.00 33.14 2.41
3823 4957 1.202371 TGCTTGGTCGATCGGTATCAC 60.202 52.381 16.41 5.24 31.93 3.06
3824 4958 1.868519 GCTTGGTCGATCGGTATCACC 60.869 57.143 16.41 15.18 35.52 4.02
3840 4974 7.211966 GGTATCACCGTATCAGTAATGTACT 57.788 40.000 0.00 0.00 40.28 2.73
3890 5042 9.233232 GTAAGATGTTTTGGTTAAACTGTCAAG 57.767 33.333 0.00 0.00 45.18 3.02
3966 5123 7.493971 ACTCAGACAATAACAATCTGCAGATAC 59.506 37.037 28.92 11.64 39.80 2.24
4023 5181 6.348458 CGTCATGAGAAAAACAGAATAAGGCA 60.348 38.462 0.00 0.00 0.00 4.75
4059 5639 2.418884 GGCGGTAGAGGAAAAAGAGAGG 60.419 54.545 0.00 0.00 0.00 3.69
4064 5644 5.510861 CGGTAGAGGAAAAAGAGAGGTGAAA 60.511 44.000 0.00 0.00 0.00 2.69
4065 5645 6.296803 GGTAGAGGAAAAAGAGAGGTGAAAA 58.703 40.000 0.00 0.00 0.00 2.29
4077 5657 6.542821 AGAGAGGTGAAAAATGGTGATGTAA 58.457 36.000 0.00 0.00 0.00 2.41
4083 5663 5.011635 GTGAAAAATGGTGATGTAACCCCTT 59.988 40.000 0.00 0.00 39.70 3.95
4085 5665 4.396357 AAATGGTGATGTAACCCCTTCA 57.604 40.909 0.00 0.00 39.70 3.02
4086 5666 2.871096 TGGTGATGTAACCCCTTCAC 57.129 50.000 0.00 0.00 39.70 3.18
4092 5745 5.010282 GTGATGTAACCCCTTCACTCATTT 58.990 41.667 0.00 0.00 36.86 2.32
4101 5754 5.121811 CCCCTTCACTCATTTCAGTCTATG 58.878 45.833 0.00 0.00 0.00 2.23
4103 5756 6.127054 CCCCTTCACTCATTTCAGTCTATGTA 60.127 42.308 0.00 0.00 0.00 2.29
4104 5757 6.983307 CCCTTCACTCATTTCAGTCTATGTAG 59.017 42.308 0.00 0.00 0.00 2.74
4105 5758 7.364232 CCCTTCACTCATTTCAGTCTATGTAGT 60.364 40.741 0.00 0.00 0.00 2.73
4108 5761 8.575649 TCACTCATTTCAGTCTATGTAGTGTA 57.424 34.615 0.00 0.00 34.79 2.90
4170 5823 5.426833 AGGGACTATTCAACTGAAGCTACAT 59.573 40.000 0.00 0.00 36.02 2.29
4172 5825 7.125811 AGGGACTATTCAACTGAAGCTACATAA 59.874 37.037 0.00 0.00 36.02 1.90
4173 5826 7.934120 GGGACTATTCAACTGAAGCTACATAAT 59.066 37.037 0.00 0.00 37.48 1.28
4227 5880 8.804204 AGACATAAATAAATAGTACTCCCTCCG 58.196 37.037 0.00 0.00 0.00 4.63
4228 5881 8.488308 ACATAAATAAATAGTACTCCCTCCGT 57.512 34.615 0.00 0.00 0.00 4.69
4229 5882 9.592196 ACATAAATAAATAGTACTCCCTCCGTA 57.408 33.333 0.00 0.00 0.00 4.02
4235 5888 7.961326 AAATAGTACTCCCTCCGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
4237 5890 9.646522 AAATAGTACTCCCTCCGTAAACTAATA 57.353 33.333 0.00 0.00 0.00 0.98
4238 5891 9.819754 AATAGTACTCCCTCCGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
4241 5894 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
4242 5895 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
4243 5896 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4244 5897 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4246 5899 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
4247 5900 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
4248 5901 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
4249 5902 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
4250 5903 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
4251 5904 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
4324 6051 5.877031 ACTGTACTACATACACACGCTAAG 58.123 41.667 0.00 0.00 38.95 2.18
4401 6131 1.776667 CATGCCAGATCTCCCCCTAAA 59.223 52.381 0.00 0.00 0.00 1.85
4406 6136 3.309193 GCCAGATCTCCCCCTAAACTTTT 60.309 47.826 0.00 0.00 0.00 2.27
4421 6151 5.655893 AAACTTTTTCCATGCGAATTGTG 57.344 34.783 0.00 0.00 0.00 3.33
4462 6193 0.389025 CAAAACCTGAGCACAACCCC 59.611 55.000 0.00 0.00 0.00 4.95
4557 6288 0.879765 CACAAAAGAGCAGGCAGAGG 59.120 55.000 0.00 0.00 0.00 3.69
4559 6290 0.251077 CAAAAGAGCAGGCAGAGGGT 60.251 55.000 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.873076 CAGTTTTGCCATGTTGGTTATTACAT 59.127 34.615 0.00 0.00 40.46 2.29
3 4 6.040955 TCAGTTTTGCCATGTTGGTTATTACA 59.959 34.615 0.00 0.00 40.46 2.41
4 5 6.451393 TCAGTTTTGCCATGTTGGTTATTAC 58.549 36.000 0.00 0.00 40.46 1.89
5 6 6.656632 TCAGTTTTGCCATGTTGGTTATTA 57.343 33.333 0.00 0.00 40.46 0.98
6 7 5.543507 TCAGTTTTGCCATGTTGGTTATT 57.456 34.783 0.00 0.00 40.46 1.40
7 8 5.543507 TTCAGTTTTGCCATGTTGGTTAT 57.456 34.783 0.00 0.00 40.46 1.89
8 9 5.344743 TTTCAGTTTTGCCATGTTGGTTA 57.655 34.783 0.00 0.00 40.46 2.85
9 10 3.902881 TTCAGTTTTGCCATGTTGGTT 57.097 38.095 0.00 0.00 40.46 3.67
10 11 3.902881 TTTCAGTTTTGCCATGTTGGT 57.097 38.095 0.00 0.00 40.46 3.67
11 12 4.440880 TCTTTTCAGTTTTGCCATGTTGG 58.559 39.130 0.00 0.00 41.55 3.77
12 13 6.128742 GCTATCTTTTCAGTTTTGCCATGTTG 60.129 38.462 0.00 0.00 0.00 3.33
13 14 5.928264 GCTATCTTTTCAGTTTTGCCATGTT 59.072 36.000 0.00 0.00 0.00 2.71
14 15 5.010922 TGCTATCTTTTCAGTTTTGCCATGT 59.989 36.000 0.00 0.00 0.00 3.21
15 16 5.472148 TGCTATCTTTTCAGTTTTGCCATG 58.528 37.500 0.00 0.00 0.00 3.66
16 17 5.726980 TGCTATCTTTTCAGTTTTGCCAT 57.273 34.783 0.00 0.00 0.00 4.40
17 18 5.528043 TTGCTATCTTTTCAGTTTTGCCA 57.472 34.783 0.00 0.00 0.00 4.92
18 19 6.257630 TGTTTTGCTATCTTTTCAGTTTTGCC 59.742 34.615 0.00 0.00 0.00 4.52
19 20 7.232945 TGTTTTGCTATCTTTTCAGTTTTGC 57.767 32.000 0.00 0.00 0.00 3.68
20 21 9.252962 AGATGTTTTGCTATCTTTTCAGTTTTG 57.747 29.630 0.00 0.00 29.64 2.44
21 22 9.468532 GAGATGTTTTGCTATCTTTTCAGTTTT 57.531 29.630 0.00 0.00 33.97 2.43
22 23 8.854117 AGAGATGTTTTGCTATCTTTTCAGTTT 58.146 29.630 0.00 0.00 33.97 2.66
23 24 8.295288 CAGAGATGTTTTGCTATCTTTTCAGTT 58.705 33.333 0.00 0.00 33.97 3.16
24 25 7.663081 TCAGAGATGTTTTGCTATCTTTTCAGT 59.337 33.333 0.00 0.00 33.97 3.41
25 26 8.037382 TCAGAGATGTTTTGCTATCTTTTCAG 57.963 34.615 0.00 0.00 33.97 3.02
26 27 7.361542 GCTCAGAGATGTTTTGCTATCTTTTCA 60.362 37.037 0.00 0.00 33.97 2.69
27 28 6.966066 GCTCAGAGATGTTTTGCTATCTTTTC 59.034 38.462 0.00 0.00 33.97 2.29
28 29 6.658391 AGCTCAGAGATGTTTTGCTATCTTTT 59.342 34.615 0.00 0.00 33.97 2.27
29 30 6.179040 AGCTCAGAGATGTTTTGCTATCTTT 58.821 36.000 0.00 0.00 33.97 2.52
30 31 5.743117 AGCTCAGAGATGTTTTGCTATCTT 58.257 37.500 0.00 0.00 33.97 2.40
31 32 5.356291 AGCTCAGAGATGTTTTGCTATCT 57.644 39.130 0.00 0.00 36.41 1.98
32 33 5.583854 TCAAGCTCAGAGATGTTTTGCTATC 59.416 40.000 0.00 0.00 0.00 2.08
33 34 5.353678 GTCAAGCTCAGAGATGTTTTGCTAT 59.646 40.000 0.00 0.00 0.00 2.97
34 35 4.692625 GTCAAGCTCAGAGATGTTTTGCTA 59.307 41.667 0.00 0.00 0.00 3.49
35 36 3.501445 GTCAAGCTCAGAGATGTTTTGCT 59.499 43.478 0.00 0.00 0.00 3.91
36 37 3.251729 TGTCAAGCTCAGAGATGTTTTGC 59.748 43.478 0.00 0.00 0.00 3.68
37 38 4.613167 GCTGTCAAGCTCAGAGATGTTTTG 60.613 45.833 0.00 0.00 46.60 2.44
38 39 3.501445 GCTGTCAAGCTCAGAGATGTTTT 59.499 43.478 0.00 0.00 46.60 2.43
39 40 3.072944 GCTGTCAAGCTCAGAGATGTTT 58.927 45.455 0.00 0.00 46.60 2.83
40 41 2.697654 GCTGTCAAGCTCAGAGATGTT 58.302 47.619 0.00 0.00 46.60 2.71
41 42 2.383368 GCTGTCAAGCTCAGAGATGT 57.617 50.000 0.00 0.00 46.60 3.06
52 53 2.954753 GACGGGCGTTGCTGTCAAG 61.955 63.158 8.93 0.00 35.33 3.02
53 54 2.970324 GACGGGCGTTGCTGTCAA 60.970 61.111 8.93 0.00 35.33 3.18
54 55 4.228567 TGACGGGCGTTGCTGTCA 62.229 61.111 11.42 11.42 39.80 3.58
55 56 3.712881 GTGACGGGCGTTGCTGTC 61.713 66.667 7.45 7.45 35.61 3.51
57 58 4.988598 AGGTGACGGGCGTTGCTG 62.989 66.667 0.00 0.00 0.00 4.41
58 59 4.988598 CAGGTGACGGGCGTTGCT 62.989 66.667 0.00 0.00 0.00 3.91
83 84 3.289834 GTGGCTGCTGTGGTGGTG 61.290 66.667 0.00 0.00 0.00 4.17
84 85 3.779850 CTGTGGCTGCTGTGGTGGT 62.780 63.158 0.00 0.00 0.00 4.16
85 86 2.963928 TTCTGTGGCTGCTGTGGTGG 62.964 60.000 0.00 0.00 0.00 4.61
86 87 1.512996 CTTCTGTGGCTGCTGTGGTG 61.513 60.000 0.00 0.00 0.00 4.17
87 88 1.228063 CTTCTGTGGCTGCTGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
88 89 0.535780 TTCTTCTGTGGCTGCTGTGG 60.536 55.000 0.00 0.00 0.00 4.17
89 90 1.311859 TTTCTTCTGTGGCTGCTGTG 58.688 50.000 0.00 0.00 0.00 3.66
90 91 1.952296 CTTTTCTTCTGTGGCTGCTGT 59.048 47.619 0.00 0.00 0.00 4.40
91 92 2.224606 TCTTTTCTTCTGTGGCTGCTG 58.775 47.619 0.00 0.00 0.00 4.41
92 93 2.645838 TCTTTTCTTCTGTGGCTGCT 57.354 45.000 0.00 0.00 0.00 4.24
93 94 3.254166 TCATTCTTTTCTTCTGTGGCTGC 59.746 43.478 0.00 0.00 0.00 5.25
94 95 4.612259 CGTCATTCTTTTCTTCTGTGGCTG 60.612 45.833 0.00 0.00 0.00 4.85
95 96 3.499918 CGTCATTCTTTTCTTCTGTGGCT 59.500 43.478 0.00 0.00 0.00 4.75
96 97 3.365364 CCGTCATTCTTTTCTTCTGTGGC 60.365 47.826 0.00 0.00 0.00 5.01
97 98 3.189287 CCCGTCATTCTTTTCTTCTGTGG 59.811 47.826 0.00 0.00 0.00 4.17
98 99 3.815401 ACCCGTCATTCTTTTCTTCTGTG 59.185 43.478 0.00 0.00 0.00 3.66
99 100 4.065789 GACCCGTCATTCTTTTCTTCTGT 58.934 43.478 0.00 0.00 0.00 3.41
100 101 4.065088 TGACCCGTCATTCTTTTCTTCTG 58.935 43.478 0.00 0.00 34.14 3.02
101 102 4.065789 GTGACCCGTCATTCTTTTCTTCT 58.934 43.478 0.03 0.00 42.18 2.85
102 103 3.188667 GGTGACCCGTCATTCTTTTCTTC 59.811 47.826 0.03 0.00 42.18 2.87
103 104 3.146847 GGTGACCCGTCATTCTTTTCTT 58.853 45.455 0.03 0.00 42.18 2.52
104 105 2.372172 AGGTGACCCGTCATTCTTTTCT 59.628 45.455 0.00 0.00 42.18 2.52
105 106 2.742589 GAGGTGACCCGTCATTCTTTTC 59.257 50.000 0.00 0.00 42.18 2.29
106 107 2.552373 GGAGGTGACCCGTCATTCTTTT 60.552 50.000 0.00 0.00 42.18 2.27
107 108 1.003233 GGAGGTGACCCGTCATTCTTT 59.997 52.381 0.00 0.00 42.18 2.52
108 109 0.613777 GGAGGTGACCCGTCATTCTT 59.386 55.000 0.00 0.00 42.18 2.52
109 110 0.252284 AGGAGGTGACCCGTCATTCT 60.252 55.000 0.00 2.49 42.18 2.40
110 111 0.175989 GAGGAGGTGACCCGTCATTC 59.824 60.000 0.00 2.82 42.18 2.67
111 112 0.544357 TGAGGAGGTGACCCGTCATT 60.544 55.000 0.00 0.00 42.18 2.57
112 113 1.078528 TGAGGAGGTGACCCGTCAT 59.921 57.895 0.00 0.00 42.18 3.06
113 114 1.906824 GTGAGGAGGTGACCCGTCA 60.907 63.158 0.00 4.72 37.24 4.35
114 115 1.596895 GAGTGAGGAGGTGACCCGTC 61.597 65.000 0.00 1.92 35.12 4.79
115 116 1.606889 GAGTGAGGAGGTGACCCGT 60.607 63.158 0.00 0.00 35.12 5.28
116 117 2.701780 CGAGTGAGGAGGTGACCCG 61.702 68.421 0.00 0.00 35.12 5.28
117 118 1.304217 TCGAGTGAGGAGGTGACCC 60.304 63.158 0.00 0.00 0.00 4.46
118 119 2.185238 CTCGAGTGAGGAGGTGACC 58.815 63.158 3.62 0.00 38.65 4.02
134 135 3.701604 ATGGAGCCGCGTCGAACTC 62.702 63.158 4.92 3.59 32.17 3.01
135 136 3.701604 GATGGAGCCGCGTCGAACT 62.702 63.158 4.92 0.00 0.00 3.01
136 137 3.255379 GATGGAGCCGCGTCGAAC 61.255 66.667 4.92 0.00 0.00 3.95
137 138 4.847516 CGATGGAGCCGCGTCGAA 62.848 66.667 4.92 0.00 36.25 3.71
144 145 1.357258 GCATATCAGCGATGGAGCCG 61.357 60.000 0.00 0.00 38.01 5.52
145 146 0.321034 TGCATATCAGCGATGGAGCC 60.321 55.000 0.00 0.00 38.01 4.70
146 147 1.077123 CTGCATATCAGCGATGGAGC 58.923 55.000 0.00 0.53 36.19 4.70
162 163 3.435186 GGAGGTCCGCAAAGCTGC 61.435 66.667 0.00 0.00 45.75 5.25
163 164 1.580845 CTTGGAGGTCCGCAAAGCTG 61.581 60.000 0.00 0.00 39.43 4.24
164 165 1.302832 CTTGGAGGTCCGCAAAGCT 60.303 57.895 0.00 0.00 39.43 3.74
165 166 2.335712 CCTTGGAGGTCCGCAAAGC 61.336 63.158 4.22 0.00 39.43 3.51
166 167 3.987404 CCTTGGAGGTCCGCAAAG 58.013 61.111 2.76 2.76 39.43 2.77
175 176 0.178992 TTTGTGAGCCACCTTGGAGG 60.179 55.000 0.00 0.00 40.96 4.30
176 177 1.691196 TTTTGTGAGCCACCTTGGAG 58.309 50.000 0.00 0.00 40.96 3.86
177 178 2.151502 TTTTTGTGAGCCACCTTGGA 57.848 45.000 0.00 0.00 40.96 3.53
193 194 2.837532 ACGGCAATGGCTTCATTTTT 57.162 40.000 5.02 0.00 38.92 1.94
194 195 2.837532 AACGGCAATGGCTTCATTTT 57.162 40.000 5.02 0.00 38.92 1.82
195 196 3.951775 TTAACGGCAATGGCTTCATTT 57.048 38.095 5.02 0.00 38.92 2.32
196 197 3.584834 GTTTAACGGCAATGGCTTCATT 58.415 40.909 5.02 0.00 41.40 2.57
197 198 2.415357 CGTTTAACGGCAATGGCTTCAT 60.415 45.455 9.88 0.00 38.08 2.57
198 199 1.068885 CGTTTAACGGCAATGGCTTCA 60.069 47.619 9.88 0.00 38.08 3.02
199 200 1.198178 TCGTTTAACGGCAATGGCTTC 59.802 47.619 17.59 0.00 42.81 3.86
200 201 1.240256 TCGTTTAACGGCAATGGCTT 58.760 45.000 17.59 1.25 42.81 4.35
201 202 1.240256 TTCGTTTAACGGCAATGGCT 58.760 45.000 17.59 0.00 42.81 4.75
202 203 2.271821 ATTCGTTTAACGGCAATGGC 57.728 45.000 17.59 0.00 42.81 4.40
203 204 4.343811 TGTATTCGTTTAACGGCAATGG 57.656 40.909 17.59 0.00 42.81 3.16
204 205 5.623335 TCTTGTATTCGTTTAACGGCAATG 58.377 37.500 17.59 10.78 42.81 2.82
205 206 5.163794 CCTCTTGTATTCGTTTAACGGCAAT 60.164 40.000 17.59 12.65 42.81 3.56
206 207 4.152759 CCTCTTGTATTCGTTTAACGGCAA 59.847 41.667 17.59 14.82 42.81 4.52
207 208 3.680937 CCTCTTGTATTCGTTTAACGGCA 59.319 43.478 17.59 8.85 42.81 5.69
208 209 3.484721 GCCTCTTGTATTCGTTTAACGGC 60.485 47.826 17.59 5.09 42.81 5.68
209 210 3.241868 CGCCTCTTGTATTCGTTTAACGG 60.242 47.826 17.59 0.00 42.81 4.44
210 211 3.241868 CCGCCTCTTGTATTCGTTTAACG 60.242 47.826 11.60 11.60 44.19 3.18
211 212 3.484721 GCCGCCTCTTGTATTCGTTTAAC 60.485 47.826 0.00 0.00 0.00 2.01
212 213 2.674357 GCCGCCTCTTGTATTCGTTTAA 59.326 45.455 0.00 0.00 0.00 1.52
213 214 2.273557 GCCGCCTCTTGTATTCGTTTA 58.726 47.619 0.00 0.00 0.00 2.01
214 215 1.084289 GCCGCCTCTTGTATTCGTTT 58.916 50.000 0.00 0.00 0.00 3.60
215 216 0.743345 GGCCGCCTCTTGTATTCGTT 60.743 55.000 0.71 0.00 0.00 3.85
216 217 1.153429 GGCCGCCTCTTGTATTCGT 60.153 57.895 0.71 0.00 0.00 3.85
217 218 2.237751 CGGCCGCCTCTTGTATTCG 61.238 63.158 14.67 0.00 0.00 3.34
218 219 1.153429 ACGGCCGCCTCTTGTATTC 60.153 57.895 28.58 0.00 0.00 1.75
219 220 1.449601 CACGGCCGCCTCTTGTATT 60.450 57.895 28.58 0.00 0.00 1.89
220 221 1.895020 TTCACGGCCGCCTCTTGTAT 61.895 55.000 28.58 0.00 0.00 2.29
221 222 2.501223 CTTCACGGCCGCCTCTTGTA 62.501 60.000 28.58 8.54 0.00 2.41
222 223 3.883744 CTTCACGGCCGCCTCTTGT 62.884 63.158 28.58 0.00 0.00 3.16
223 224 3.121030 CTTCACGGCCGCCTCTTG 61.121 66.667 28.58 16.39 0.00 3.02
232 233 2.939460 ATTTTACATGGCTTCACGGC 57.061 45.000 0.00 0.00 38.97 5.68
233 234 6.631238 CGTATTTATTTTACATGGCTTCACGG 59.369 38.462 0.00 0.00 0.00 4.94
234 235 7.163520 CACGTATTTATTTTACATGGCTTCACG 59.836 37.037 0.00 0.00 0.00 4.35
235 236 8.178964 TCACGTATTTATTTTACATGGCTTCAC 58.821 33.333 0.00 0.00 0.00 3.18
236 237 8.270080 TCACGTATTTATTTTACATGGCTTCA 57.730 30.769 0.00 0.00 0.00 3.02
237 238 8.395633 ACTCACGTATTTATTTTACATGGCTTC 58.604 33.333 0.00 0.00 0.00 3.86
238 239 8.276252 ACTCACGTATTTATTTTACATGGCTT 57.724 30.769 0.00 0.00 0.00 4.35
239 240 7.859325 ACTCACGTATTTATTTTACATGGCT 57.141 32.000 0.00 0.00 0.00 4.75
240 241 9.991388 TTTACTCACGTATTTATTTTACATGGC 57.009 29.630 0.00 0.00 0.00 4.40
278 279 6.255453 TGTTTGTTTGTACTTGTACGTACTCC 59.745 38.462 25.12 9.75 40.25 3.85
291 292 4.275936 AGATGTGGAGCTGTTTGTTTGTAC 59.724 41.667 0.00 0.00 0.00 2.90
292 293 4.460263 AGATGTGGAGCTGTTTGTTTGTA 58.540 39.130 0.00 0.00 0.00 2.41
293 294 3.290710 AGATGTGGAGCTGTTTGTTTGT 58.709 40.909 0.00 0.00 0.00 2.83
294 295 3.996150 AGATGTGGAGCTGTTTGTTTG 57.004 42.857 0.00 0.00 0.00 2.93
295 296 3.498397 CGTAGATGTGGAGCTGTTTGTTT 59.502 43.478 0.00 0.00 0.00 2.83
296 297 3.067106 CGTAGATGTGGAGCTGTTTGTT 58.933 45.455 0.00 0.00 0.00 2.83
304 309 1.067142 TGTTGACCGTAGATGTGGAGC 60.067 52.381 0.00 0.00 0.00 4.70
321 326 7.833786 TGGTTACTGACGAGTCTAATAATGTT 58.166 34.615 4.78 0.00 33.21 2.71
331 336 1.132643 AGCGATGGTTACTGACGAGTC 59.867 52.381 0.00 0.00 33.21 3.36
333 338 1.135373 ACAGCGATGGTTACTGACGAG 60.135 52.381 5.32 0.00 35.38 4.18
335 340 1.135373 AGACAGCGATGGTTACTGACG 60.135 52.381 5.32 0.00 35.38 4.35
338 358 2.654749 TCAGACAGCGATGGTTACTG 57.345 50.000 5.32 9.11 37.45 2.74
355 375 6.462552 TGGATATGCGATTTGGAAATTTCA 57.537 33.333 19.49 3.64 0.00 2.69
356 376 7.951530 AATGGATATGCGATTTGGAAATTTC 57.048 32.000 9.83 9.83 0.00 2.17
876 896 1.006102 ACTTGTGAAGACCGGAGCG 60.006 57.895 9.46 0.00 0.00 5.03
877 897 0.318762 AGACTTGTGAAGACCGGAGC 59.681 55.000 9.46 0.00 0.00 4.70
960 980 3.878667 GGAGGAATGGGGAGCGGG 61.879 72.222 0.00 0.00 0.00 6.13
961 981 3.878667 GGGAGGAATGGGGAGCGG 61.879 72.222 0.00 0.00 0.00 5.52
963 983 3.502875 GGGGGAGGAATGGGGAGC 61.503 72.222 0.00 0.00 0.00 4.70
1264 1638 0.338120 AGTTGAGGGAGGAGGAGGAG 59.662 60.000 0.00 0.00 0.00 3.69
1265 1639 0.336737 GAGTTGAGGGAGGAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
1266 1640 0.689412 GGAGTTGAGGGAGGAGGAGG 60.689 65.000 0.00 0.00 0.00 4.30
1267 1641 0.041833 TGGAGTTGAGGGAGGAGGAG 59.958 60.000 0.00 0.00 0.00 3.69
1430 1807 0.033011 AGGCGGGTATCTGTCTGTCT 60.033 55.000 0.00 0.00 32.06 3.41
1431 1808 0.386113 GAGGCGGGTATCTGTCTGTC 59.614 60.000 0.00 0.00 33.72 3.51
1432 1809 0.324368 TGAGGCGGGTATCTGTCTGT 60.324 55.000 0.00 0.00 33.72 3.41
1433 1810 0.103208 GTGAGGCGGGTATCTGTCTG 59.897 60.000 0.00 0.00 33.72 3.51
1434 1811 1.043673 GGTGAGGCGGGTATCTGTCT 61.044 60.000 0.00 0.00 36.83 3.41
1435 1812 1.442148 GGTGAGGCGGGTATCTGTC 59.558 63.158 0.00 0.00 0.00 3.51
1436 1813 2.064581 GGGTGAGGCGGGTATCTGT 61.065 63.158 0.00 0.00 0.00 3.41
1437 1814 2.063979 TGGGTGAGGCGGGTATCTG 61.064 63.158 0.00 0.00 0.00 2.90
1438 1815 2.064581 GTGGGTGAGGCGGGTATCT 61.065 63.158 0.00 0.00 0.00 1.98
1449 1826 3.813606 TTCGGTCGGAGGTGGGTGA 62.814 63.158 0.00 0.00 0.00 4.02
1473 1850 2.175811 GGACACGCGCATTTCACC 59.824 61.111 5.73 0.00 0.00 4.02
1494 1871 2.743718 CCTCCGGTGAAGCAGTGT 59.256 61.111 4.76 0.00 0.00 3.55
1500 1877 2.032528 TTGCTGCCTCCGGTGAAG 59.967 61.111 4.76 0.92 0.00 3.02
1517 1894 1.605058 CCTGATCCCTCGTTGGTCGT 61.605 60.000 0.00 0.00 40.80 4.34
1519 1896 1.069358 GATCCTGATCCCTCGTTGGTC 59.931 57.143 0.00 0.00 31.76 4.02
1551 1928 1.540267 TCTCCCTCTCTCGTTTGTTCG 59.460 52.381 0.00 0.00 0.00 3.95
1556 1933 0.322636 TCGCTCTCCCTCTCTCGTTT 60.323 55.000 0.00 0.00 0.00 3.60
1567 1944 2.265182 CCGATCCCTCTCGCTCTCC 61.265 68.421 0.00 0.00 37.33 3.71
1663 2041 4.039004 ACACAAATTTGCTGCAATAGTGGA 59.961 37.500 25.83 11.48 0.00 4.02
1710 2091 2.202932 CTTGCATCCGTCCCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
1714 2095 3.134127 GGCACTTGCATCCGTCCC 61.134 66.667 3.15 0.00 44.36 4.46
1718 2099 1.063006 CGAATGGCACTTGCATCCG 59.937 57.895 3.15 0.00 44.36 4.18
1721 2102 1.597797 CCACCGAATGGCACTTGCAT 61.598 55.000 3.15 0.00 43.24 3.96
1768 2149 2.823829 CGCAGCCGCCACCTAAATC 61.824 63.158 0.00 0.00 33.11 2.17
1810 2191 2.441901 TTTGGGCCATCCATCCGC 60.442 61.111 7.26 0.00 46.52 5.54
1849 2230 5.931724 CACCAATCAACCGCACAGATATATA 59.068 40.000 0.00 0.00 0.00 0.86
1852 2233 2.945008 CACCAATCAACCGCACAGATAT 59.055 45.455 0.00 0.00 0.00 1.63
1853 2234 2.355197 CACCAATCAACCGCACAGATA 58.645 47.619 0.00 0.00 0.00 1.98
1856 2237 1.580942 CCACCAATCAACCGCACAG 59.419 57.895 0.00 0.00 0.00 3.66
1949 2588 1.299468 CCGATCACTAGAGGCGTGC 60.299 63.158 0.00 0.00 32.54 5.34
1954 2593 2.029470 GGAAGATGCCGATCACTAGAGG 60.029 54.545 0.00 0.00 0.00 3.69
2062 2712 1.108776 CTGGTTGGCATGGATTCCTG 58.891 55.000 3.95 1.37 0.00 3.86
2076 2740 6.782494 ACCAGAAAATTCCTTGAATACTGGTT 59.218 34.615 22.58 14.44 45.91 3.67
2130 2820 5.170021 TCAATCAAAACAGCCATTGCATAC 58.830 37.500 0.00 0.00 41.13 2.39
2171 2861 5.000012 AGAAGAGTGTAGATAAACCTGCG 58.000 43.478 0.00 0.00 0.00 5.18
2310 3036 6.368791 GGCTTTGAGGAATTTTGATAAACCAC 59.631 38.462 0.00 0.00 0.00 4.16
2342 3068 0.464036 TTTGGCCTCTATGCGACGAT 59.536 50.000 3.32 0.00 0.00 3.73
2344 3070 1.429148 GGTTTGGCCTCTATGCGACG 61.429 60.000 3.32 0.00 0.00 5.12
2482 3217 0.804989 GCCAACAGTCCCATTTCGAG 59.195 55.000 0.00 0.00 0.00 4.04
2492 3227 6.480320 CACAGTATTATTAGGAGCCAACAGTC 59.520 42.308 0.00 0.00 0.00 3.51
2518 3313 4.399303 GCAAAATAGTTCATAGCACCAGGT 59.601 41.667 0.00 0.00 0.00 4.00
2526 3321 8.398665 GTCAGGTTAAGGCAAAATAGTTCATAG 58.601 37.037 0.00 0.00 0.00 2.23
2577 3372 4.378874 GCTTCCAGTATCACAAGCAAGAAC 60.379 45.833 0.00 0.00 40.86 3.01
2689 3484 4.697352 ACCATCACAAATCAAGTAGCTGAC 59.303 41.667 0.00 0.00 0.00 3.51
2697 3496 7.255381 GGGATTATCAGACCATCACAAATCAAG 60.255 40.741 0.00 0.00 0.00 3.02
2724 3526 2.647299 TCTGGGAAATCCTGCAGGTTTA 59.353 45.455 31.58 14.17 36.20 2.01
2845 3647 5.759059 TGGGAGTTTCATTGCATAGATTCT 58.241 37.500 0.00 0.00 0.00 2.40
2848 3650 4.280174 GCATGGGAGTTTCATTGCATAGAT 59.720 41.667 0.00 0.00 0.00 1.98
2867 3669 0.447801 GACTACGGGTTGCAAGCATG 59.552 55.000 28.22 21.58 0.00 4.06
2871 3861 2.572191 TATCGACTACGGGTTGCAAG 57.428 50.000 0.00 0.00 40.21 4.01
2873 3863 3.530265 ATTTATCGACTACGGGTTGCA 57.470 42.857 0.00 0.00 40.21 4.08
2972 3962 3.876914 CTGAAAAGTACAGTGGCAGTTGA 59.123 43.478 5.98 0.00 0.00 3.18
3184 4304 2.202566 GTGAGTTAGGTTCGCCATAGC 58.797 52.381 0.00 0.00 40.60 2.97
3264 4384 4.379302 AAGAGGGAAGAGATGCTTGTTT 57.621 40.909 0.00 0.00 36.83 2.83
3300 4426 3.509967 TCAGTCACGGTGTACAGATTGAT 59.490 43.478 8.17 0.00 0.00 2.57
3401 4527 2.168106 CTCAGGGATCAGGACAGTGAAG 59.832 54.545 0.00 0.00 0.00 3.02
3405 4531 3.313811 CCTCAGGGATCAGGACAGT 57.686 57.895 0.00 0.00 33.58 3.55
3429 4555 3.461773 CATGTCCTCGGGTCGGCT 61.462 66.667 0.00 0.00 0.00 5.52
3437 4563 6.083098 AGAAGAAGTATCATCATGTCCTCG 57.917 41.667 0.00 0.00 0.00 4.63
3456 4582 7.338196 TCAATCCTCACTACTACTTCTGAGAAG 59.662 40.741 20.00 20.00 33.30 2.85
3462 4588 8.688151 GTTGTATCAATCCTCACTACTACTTCT 58.312 37.037 0.00 0.00 0.00 2.85
3572 4698 5.103982 ACAACATTCATCCCATACATCAGGA 60.104 40.000 0.00 0.00 0.00 3.86
3584 4717 8.586570 TGTGAAACATTTTACAACATTCATCC 57.413 30.769 0.00 0.00 45.67 3.51
3651 4785 4.624913 TCAGACTATCAGGGTGATTTCCT 58.375 43.478 0.00 0.00 38.26 3.36
3652 4786 5.359194 TTCAGACTATCAGGGTGATTTCC 57.641 43.478 0.00 0.00 38.26 3.13
3653 4787 6.352516 ACATTCAGACTATCAGGGTGATTTC 58.647 40.000 0.00 0.00 38.26 2.17
3700 4834 3.756434 CCATCCCACGTTCTGTAAACATT 59.244 43.478 0.00 0.00 0.00 2.71
3795 4929 0.606604 ATCGACCAAGCAACTACCGT 59.393 50.000 0.00 0.00 0.00 4.83
3831 4965 4.024670 AGAGGGAGTGGACAGTACATTAC 58.975 47.826 0.00 0.00 0.00 1.89
3833 4967 2.834549 CAGAGGGAGTGGACAGTACATT 59.165 50.000 0.00 0.00 0.00 2.71
3834 4968 2.225394 ACAGAGGGAGTGGACAGTACAT 60.225 50.000 0.00 0.00 0.00 2.29
3835 4969 1.147191 ACAGAGGGAGTGGACAGTACA 59.853 52.381 0.00 0.00 0.00 2.90
3836 4970 1.926108 ACAGAGGGAGTGGACAGTAC 58.074 55.000 0.00 0.00 0.00 2.73
3837 4971 3.820195 TTACAGAGGGAGTGGACAGTA 57.180 47.619 0.00 0.00 0.00 2.74
3838 4972 2.633481 GTTTACAGAGGGAGTGGACAGT 59.367 50.000 0.00 0.00 0.00 3.55
3840 4974 2.684943 TGTTTACAGAGGGAGTGGACA 58.315 47.619 0.00 0.00 0.00 4.02
3841 4975 3.764237 TTGTTTACAGAGGGAGTGGAC 57.236 47.619 0.00 0.00 0.00 4.02
3842 4976 4.104102 ACATTTGTTTACAGAGGGAGTGGA 59.896 41.667 0.00 0.00 0.00 4.02
3890 5042 6.408428 CCGCTGTAAACAAATATAAGACGTC 58.592 40.000 7.70 7.70 0.00 4.34
3941 5098 6.922247 ATCTGCAGATTGTTATTGTCTGAG 57.078 37.500 23.75 1.65 41.38 3.35
3959 5116 4.153475 TGCAAGGTAAGAAAACGTATCTGC 59.847 41.667 4.71 4.78 0.00 4.26
3966 5123 7.924103 AAATTACTTGCAAGGTAAGAAAACG 57.076 32.000 29.18 1.85 33.50 3.60
3997 5154 6.348540 GCCTTATTCTGTTTTTCTCATGACGT 60.349 38.462 0.00 0.00 0.00 4.34
3998 5155 6.024049 GCCTTATTCTGTTTTTCTCATGACG 58.976 40.000 0.00 0.00 0.00 4.35
4023 5181 7.612633 TCCTCTACCGCCAGTTAAAAATATTTT 59.387 33.333 7.64 7.64 0.00 1.82
4059 5639 4.526650 AGGGGTTACATCACCATTTTTCAC 59.473 41.667 0.00 0.00 38.79 3.18
4064 5644 4.086457 GTGAAGGGGTTACATCACCATTT 58.914 43.478 0.00 0.00 38.79 2.32
4065 5645 3.333680 AGTGAAGGGGTTACATCACCATT 59.666 43.478 0.00 0.00 42.39 3.16
4077 5657 2.982488 AGACTGAAATGAGTGAAGGGGT 59.018 45.455 0.00 0.00 0.00 4.95
4083 5663 7.468141 ACACTACATAGACTGAAATGAGTGA 57.532 36.000 15.61 0.00 36.21 3.41
4134 5787 6.817765 TGAATAGTCCCTTCATTCACAAAC 57.182 37.500 0.00 0.00 34.58 2.93
4143 5796 4.287067 AGCTTCAGTTGAATAGTCCCTTCA 59.713 41.667 0.00 0.00 33.01 3.02
4145 5798 4.917906 AGCTTCAGTTGAATAGTCCCTT 57.082 40.909 0.00 0.00 33.01 3.95
4172 5825 9.197694 GTTCGTTCTAGTGCTGATGAATAATAT 57.802 33.333 0.00 0.00 0.00 1.28
4173 5826 7.652105 GGTTCGTTCTAGTGCTGATGAATAATA 59.348 37.037 0.00 0.00 0.00 0.98
4175 5828 5.810587 GGTTCGTTCTAGTGCTGATGAATAA 59.189 40.000 0.00 0.00 0.00 1.40
4216 5869 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
4218 5871 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
4220 5873 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
4221 5874 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
4224 5877 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
4225 5878 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
4272 5925 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
4274 5927 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
4281 5934 9.401058 GTACAGTACTCCCTCTGTAAACTAATA 57.599 37.037 3.19 0.00 44.90 0.98
4282 5935 8.114743 AGTACAGTACTCCCTCTGTAAACTAAT 58.885 37.037 7.48 0.00 44.90 1.73
4283 5936 7.465116 AGTACAGTACTCCCTCTGTAAACTAA 58.535 38.462 7.48 0.00 44.90 2.24
4284 5937 7.025520 AGTACAGTACTCCCTCTGTAAACTA 57.974 40.000 7.48 0.00 44.90 2.24
4285 5938 5.890049 AGTACAGTACTCCCTCTGTAAACT 58.110 41.667 7.48 1.89 44.90 2.66
4286 5939 6.656693 TGTAGTACAGTACTCCCTCTGTAAAC 59.343 42.308 16.91 6.29 44.90 2.01
4287 5940 6.782986 TGTAGTACAGTACTCCCTCTGTAAA 58.217 40.000 16.91 0.00 44.90 2.01
4290 5943 4.923516 TGTAGTACAGTACTCCCTCTGT 57.076 45.455 16.91 0.00 45.21 3.41
4291 5944 6.260493 GTGTATGTAGTACAGTACTCCCTCTG 59.740 46.154 16.91 0.00 43.70 3.35
4292 5945 6.069789 TGTGTATGTAGTACAGTACTCCCTCT 60.070 42.308 16.91 2.16 43.70 3.69
4294 5947 5.884792 GTGTGTATGTAGTACAGTACTCCCT 59.115 44.000 16.91 1.49 43.70 4.20
4295 5948 5.220739 CGTGTGTATGTAGTACAGTACTCCC 60.221 48.000 16.91 9.54 43.70 4.30
4296 5949 5.728898 GCGTGTGTATGTAGTACAGTACTCC 60.729 48.000 16.91 6.43 43.70 3.85
4297 5950 5.064452 AGCGTGTGTATGTAGTACAGTACTC 59.936 44.000 16.91 9.37 43.70 2.59
4364 6094 3.510251 CATGTCAATGCGATTCTACGG 57.490 47.619 0.00 0.00 0.00 4.02
4387 6117 4.606255 TGGAAAAAGTTTAGGGGGAGATCT 59.394 41.667 0.00 0.00 0.00 2.75
4401 6131 4.582701 TCACAATTCGCATGGAAAAAGT 57.417 36.364 0.00 0.00 38.36 2.66
4406 6136 4.517952 AACATTCACAATTCGCATGGAA 57.482 36.364 0.00 0.00 39.42 3.53
4462 6193 2.740981 GTGAGCTCTGATTGGAAGTGTG 59.259 50.000 16.19 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.