Multiple sequence alignment - TraesCS2A01G586900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G586900 chr2A 100.000 4216 0 0 1 4216 777285401 777289616 0.000000e+00 7786.0
1 TraesCS2A01G586900 chr2A 95.683 278 11 1 75 351 722516279 722516002 2.990000e-121 446.0
2 TraesCS2A01G586900 chr2A 90.196 102 5 4 1 100 624470818 624470720 1.230000e-25 128.0
3 TraesCS2A01G586900 chr2D 92.205 2553 133 31 367 2890 650863990 650861475 0.000000e+00 3552.0
4 TraesCS2A01G586900 chr2D 92.219 784 42 7 2886 3650 650861396 650860613 0.000000e+00 1092.0
5 TraesCS2A01G586900 chr2D 91.444 187 11 3 3987 4172 650860326 650860144 7.000000e-63 252.0
6 TraesCS2A01G586900 chr2D 88.235 68 6 1 3916 3981 36583997 36584064 3.490000e-11 80.5
7 TraesCS2A01G586900 chr2D 92.500 40 2 1 661 699 648650238 648650277 5.890000e-04 56.5
8 TraesCS2A01G586900 chr2B 94.441 1727 74 12 2064 3771 779856357 779854634 0.000000e+00 2638.0
9 TraesCS2A01G586900 chr2B 87.093 1596 117 39 383 1932 779858305 779856753 0.000000e+00 1724.0
10 TraesCS2A01G586900 chr2B 90.968 310 18 7 1767 2072 779856682 779856379 3.920000e-110 409.0
11 TraesCS2A01G586900 chr2B 91.892 185 9 2 4038 4216 779853958 779853774 1.950000e-63 254.0
12 TraesCS2A01G586900 chr2B 90.551 127 6 6 3740 3866 699185489 699185609 3.370000e-36 163.0
13 TraesCS2A01G586900 chr2B 87.302 63 3 4 3927 3987 357921186 357921245 2.720000e-07 67.6
14 TraesCS2A01G586900 chr7B 88.343 712 61 11 772 1465 332556646 332557353 0.000000e+00 835.0
15 TraesCS2A01G586900 chr7B 98.936 94 1 0 3768 3861 107564715 107564808 7.250000e-38 169.0
16 TraesCS2A01G586900 chr7B 95.098 102 3 2 3758 3857 506627032 506627133 4.360000e-35 159.0
17 TraesCS2A01G586900 chr5A 96.029 277 9 2 77 352 60096012 60095737 2.310000e-122 449.0
18 TraesCS2A01G586900 chr5A 98.750 80 1 0 1 80 498406303 498406224 4.390000e-30 143.0
19 TraesCS2A01G586900 chr1A 95.122 287 11 3 77 361 53021991 53022276 2.310000e-122 449.0
20 TraesCS2A01G586900 chr1A 94.502 291 12 4 65 352 481919560 481919849 2.990000e-121 446.0
21 TraesCS2A01G586900 chr1B 96.014 276 10 1 74 348 547278669 547278944 8.320000e-122 448.0
22 TraesCS2A01G586900 chr4A 95.683 278 11 1 75 351 445073024 445072747 2.990000e-121 446.0
23 TraesCS2A01G586900 chr4A 95.876 97 4 0 3767 3863 544888201 544888297 1.570000e-34 158.0
24 TraesCS2A01G586900 chr4A 92.632 95 7 0 1 95 521848818 521848724 2.040000e-28 137.0
25 TraesCS2A01G586900 chr3A 95.683 278 11 1 75 351 361973303 361973026 2.990000e-121 446.0
26 TraesCS2A01G586900 chr3A 95.053 283 12 2 74 355 259836319 259836600 1.080000e-120 444.0
27 TraesCS2A01G586900 chr7A 95.357 280 12 1 73 351 90654986 90654707 1.080000e-120 444.0
28 TraesCS2A01G586900 chr7A 96.939 98 2 1 3768 3865 661299125 661299221 3.370000e-36 163.0
29 TraesCS2A01G586900 chr7A 97.872 94 1 1 3768 3860 301100424 301100517 1.210000e-35 161.0
30 TraesCS2A01G586900 chr7A 98.750 80 1 0 1 80 240758057 240757978 4.390000e-30 143.0
31 TraesCS2A01G586900 chr7A 100.000 31 0 0 661 691 296596637 296596667 1.640000e-04 58.4
32 TraesCS2A01G586900 chr7A 100.000 31 0 0 661 691 296596682 296596712 1.640000e-04 58.4
33 TraesCS2A01G586900 chr7A 100.000 31 0 0 661 691 296596688 296596718 1.640000e-04 58.4
34 TraesCS2A01G586900 chr7A 100.000 31 0 0 661 691 296596694 296596724 1.640000e-04 58.4
35 TraesCS2A01G586900 chr7A 100.000 28 0 0 664 691 296596679 296596706 8.000000e-03 52.8
36 TraesCS2A01G586900 chr3B 96.907 97 3 0 3767 3863 245305181 245305085 3.370000e-36 163.0
37 TraesCS2A01G586900 chr3B 97.895 95 1 1 3766 3859 283376093 283375999 3.370000e-36 163.0
38 TraesCS2A01G586900 chr3B 95.098 102 1 3 3753 3852 820469679 820469778 1.570000e-34 158.0
39 TraesCS2A01G586900 chr3B 92.857 56 2 1 3934 3987 379353216 379353161 3.490000e-11 80.5
40 TraesCS2A01G586900 chr6D 100.000 78 0 0 1 78 170286819 170286742 1.220000e-30 145.0
41 TraesCS2A01G586900 chr7D 97.561 82 2 0 1 82 440266935 440267016 1.580000e-29 141.0
42 TraesCS2A01G586900 chr1D 97.561 82 2 0 1 82 35805091 35805010 1.580000e-29 141.0
43 TraesCS2A01G586900 chr4B 96.429 84 3 0 1 84 528579058 528579141 5.680000e-29 139.0
44 TraesCS2A01G586900 chr4B 85.965 57 8 0 3915 3971 179835164 179835220 1.270000e-05 62.1
45 TraesCS2A01G586900 chr6B 93.548 93 4 2 1 93 488904777 488904867 2.040000e-28 137.0
46 TraesCS2A01G586900 chr3D 89.333 75 6 1 3915 3987 38408280 38408354 4.490000e-15 93.5
47 TraesCS2A01G586900 chr6A 100.000 28 0 0 662 689 155946271 155946298 8.000000e-03 52.8
48 TraesCS2A01G586900 chr4D 100.000 28 0 0 4147 4174 505657686 505657713 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G586900 chr2A 777285401 777289616 4215 False 7786.00 7786 100.0000 1 4216 1 chr2A.!!$F1 4215
1 TraesCS2A01G586900 chr2D 650860144 650863990 3846 True 1632.00 3552 91.9560 367 4172 3 chr2D.!!$R1 3805
2 TraesCS2A01G586900 chr2B 779853774 779858305 4531 True 1256.25 2638 91.0985 383 4216 4 chr2B.!!$R1 3833
3 TraesCS2A01G586900 chr7B 332556646 332557353 707 False 835.00 835 88.3430 772 1465 1 chr7B.!!$F2 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 929 0.035439 TCTGAATCTTTCCCCACGCC 60.035 55.0 0.00 0.0 0.0 5.68 F
1437 1492 0.323178 TCTCCGCGTTCCTCTACCTT 60.323 55.0 4.92 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2686 3009 1.750206 ACTGCATTTGTGCACACTTCA 59.250 42.857 21.56 13.76 40.23 3.02 R
3222 3643 0.671781 CCACTGAAACAGGAGCGAGG 60.672 60.000 0.00 0.00 35.51 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
73 74 4.137543 CCTCTAGGGCATATTTCCAACAC 58.862 47.826 0.00 0.00 0.00 3.32
74 75 4.141390 CCTCTAGGGCATATTTCCAACACT 60.141 45.833 0.00 0.00 0.00 3.55
75 76 5.440610 CTCTAGGGCATATTTCCAACACTT 58.559 41.667 0.00 0.00 0.00 3.16
76 77 6.409234 CCTCTAGGGCATATTTCCAACACTTA 60.409 42.308 0.00 0.00 0.00 2.24
77 78 6.591935 TCTAGGGCATATTTCCAACACTTAG 58.408 40.000 0.00 0.00 0.00 2.18
78 79 4.536765 AGGGCATATTTCCAACACTTAGG 58.463 43.478 0.00 0.00 0.00 2.69
79 80 3.636764 GGGCATATTTCCAACACTTAGGG 59.363 47.826 0.00 0.00 0.00 3.53
80 81 3.068165 GGCATATTTCCAACACTTAGGGC 59.932 47.826 0.00 0.00 0.00 5.19
81 82 3.699038 GCATATTTCCAACACTTAGGGCA 59.301 43.478 0.00 0.00 0.00 5.36
82 83 4.342092 GCATATTTCCAACACTTAGGGCAT 59.658 41.667 0.00 0.00 0.00 4.40
83 84 5.737063 GCATATTTCCAACACTTAGGGCATG 60.737 44.000 0.00 0.00 0.00 4.06
84 85 2.969821 TTCCAACACTTAGGGCATGT 57.030 45.000 0.00 0.00 0.00 3.21
85 86 4.374689 TTTCCAACACTTAGGGCATGTA 57.625 40.909 0.00 0.00 0.00 2.29
86 87 3.343941 TCCAACACTTAGGGCATGTAC 57.656 47.619 0.00 0.00 0.00 2.90
87 88 2.640332 TCCAACACTTAGGGCATGTACA 59.360 45.455 0.00 0.00 0.00 2.90
88 89 3.073209 TCCAACACTTAGGGCATGTACAA 59.927 43.478 0.00 0.00 0.00 2.41
89 90 4.016444 CCAACACTTAGGGCATGTACAAT 58.984 43.478 0.00 0.00 0.00 2.71
90 91 4.142403 CCAACACTTAGGGCATGTACAATG 60.142 45.833 0.00 0.12 0.00 2.82
91 92 3.620488 ACACTTAGGGCATGTACAATGG 58.380 45.455 0.00 0.00 0.00 3.16
92 93 3.010138 ACACTTAGGGCATGTACAATGGT 59.990 43.478 0.00 0.00 0.00 3.55
93 94 3.378112 CACTTAGGGCATGTACAATGGTG 59.622 47.826 0.00 0.00 0.00 4.17
94 95 2.051334 TAGGGCATGTACAATGGTGC 57.949 50.000 10.12 10.12 36.88 5.01
95 96 0.332632 AGGGCATGTACAATGGTGCT 59.667 50.000 16.47 0.00 37.70 4.40
96 97 1.563879 AGGGCATGTACAATGGTGCTA 59.436 47.619 16.47 0.00 37.70 3.49
97 98 2.175499 AGGGCATGTACAATGGTGCTAT 59.825 45.455 16.47 5.35 37.70 2.97
98 99 2.554032 GGGCATGTACAATGGTGCTATC 59.446 50.000 16.47 3.12 37.70 2.08
99 100 3.480470 GGCATGTACAATGGTGCTATCT 58.520 45.455 16.47 0.00 37.70 1.98
100 101 3.885297 GGCATGTACAATGGTGCTATCTT 59.115 43.478 16.47 0.00 37.70 2.40
101 102 5.063204 GGCATGTACAATGGTGCTATCTTA 58.937 41.667 16.47 0.00 37.70 2.10
102 103 5.180117 GGCATGTACAATGGTGCTATCTTAG 59.820 44.000 16.47 0.00 37.70 2.18
103 104 5.991606 GCATGTACAATGGTGCTATCTTAGA 59.008 40.000 11.12 0.00 34.85 2.10
104 105 6.483307 GCATGTACAATGGTGCTATCTTAGAA 59.517 38.462 11.12 0.00 34.85 2.10
105 106 7.307632 GCATGTACAATGGTGCTATCTTAGAAG 60.308 40.741 11.12 0.00 34.85 2.85
106 107 7.182817 TGTACAATGGTGCTATCTTAGAAGT 57.817 36.000 0.00 0.00 0.00 3.01
107 108 7.041721 TGTACAATGGTGCTATCTTAGAAGTG 58.958 38.462 0.00 0.00 0.00 3.16
108 109 4.878397 ACAATGGTGCTATCTTAGAAGTGC 59.122 41.667 0.00 0.00 0.00 4.40
109 110 3.543680 TGGTGCTATCTTAGAAGTGCC 57.456 47.619 0.00 0.00 0.00 5.01
110 111 2.837591 TGGTGCTATCTTAGAAGTGCCA 59.162 45.455 0.00 0.00 0.00 4.92
111 112 3.455910 TGGTGCTATCTTAGAAGTGCCAT 59.544 43.478 0.00 0.00 0.00 4.40
112 113 3.812053 GGTGCTATCTTAGAAGTGCCATG 59.188 47.826 0.00 0.00 0.00 3.66
113 114 4.446371 GTGCTATCTTAGAAGTGCCATGT 58.554 43.478 0.00 0.00 0.00 3.21
114 115 5.453339 GGTGCTATCTTAGAAGTGCCATGTA 60.453 44.000 0.00 0.00 0.00 2.29
115 116 5.694006 GTGCTATCTTAGAAGTGCCATGTAG 59.306 44.000 0.00 0.00 0.00 2.74
116 117 5.221521 TGCTATCTTAGAAGTGCCATGTAGG 60.222 44.000 0.00 0.00 41.84 3.18
117 118 5.011125 GCTATCTTAGAAGTGCCATGTAGGA 59.989 44.000 0.00 0.00 41.22 2.94
118 119 6.295575 GCTATCTTAGAAGTGCCATGTAGGAT 60.296 42.308 0.00 0.00 41.22 3.24
119 120 7.093727 GCTATCTTAGAAGTGCCATGTAGGATA 60.094 40.741 0.00 0.00 41.22 2.59
120 121 7.618019 ATCTTAGAAGTGCCATGTAGGATAA 57.382 36.000 0.00 0.00 41.22 1.75
121 122 7.432148 TCTTAGAAGTGCCATGTAGGATAAA 57.568 36.000 0.00 0.00 41.22 1.40
122 123 8.034313 TCTTAGAAGTGCCATGTAGGATAAAT 57.966 34.615 0.00 0.00 41.22 1.40
123 124 7.933577 TCTTAGAAGTGCCATGTAGGATAAATG 59.066 37.037 0.00 0.00 41.22 2.32
124 125 6.252599 AGAAGTGCCATGTAGGATAAATGA 57.747 37.500 0.00 0.00 38.63 2.57
125 126 6.845908 AGAAGTGCCATGTAGGATAAATGAT 58.154 36.000 0.00 0.00 38.63 2.45
126 127 6.713903 AGAAGTGCCATGTAGGATAAATGATG 59.286 38.462 0.00 0.00 38.63 3.07
127 128 6.191657 AGTGCCATGTAGGATAAATGATGA 57.808 37.500 0.00 0.00 38.63 2.92
128 129 6.236409 AGTGCCATGTAGGATAAATGATGAG 58.764 40.000 0.00 0.00 38.63 2.90
129 130 5.413833 GTGCCATGTAGGATAAATGATGAGG 59.586 44.000 0.00 0.00 38.63 3.86
130 131 5.073554 TGCCATGTAGGATAAATGATGAGGT 59.926 40.000 0.00 0.00 38.63 3.85
131 132 5.413833 GCCATGTAGGATAAATGATGAGGTG 59.586 44.000 0.00 0.00 38.63 4.00
132 133 5.942236 CCATGTAGGATAAATGATGAGGTGG 59.058 44.000 0.00 0.00 38.63 4.61
133 134 6.239973 CCATGTAGGATAAATGATGAGGTGGA 60.240 42.308 0.00 0.00 38.63 4.02
134 135 6.425210 TGTAGGATAAATGATGAGGTGGAG 57.575 41.667 0.00 0.00 0.00 3.86
135 136 4.989875 AGGATAAATGATGAGGTGGAGG 57.010 45.455 0.00 0.00 0.00 4.30
136 137 4.570926 AGGATAAATGATGAGGTGGAGGA 58.429 43.478 0.00 0.00 0.00 3.71
137 138 4.596643 AGGATAAATGATGAGGTGGAGGAG 59.403 45.833 0.00 0.00 0.00 3.69
138 139 4.594920 GGATAAATGATGAGGTGGAGGAGA 59.405 45.833 0.00 0.00 0.00 3.71
139 140 5.279910 GGATAAATGATGAGGTGGAGGAGAG 60.280 48.000 0.00 0.00 0.00 3.20
140 141 3.411454 AATGATGAGGTGGAGGAGAGA 57.589 47.619 0.00 0.00 0.00 3.10
141 142 2.450867 TGATGAGGTGGAGGAGAGAG 57.549 55.000 0.00 0.00 0.00 3.20
142 143 1.925959 TGATGAGGTGGAGGAGAGAGA 59.074 52.381 0.00 0.00 0.00 3.10
143 144 2.313041 TGATGAGGTGGAGGAGAGAGAA 59.687 50.000 0.00 0.00 0.00 2.87
144 145 2.223803 TGAGGTGGAGGAGAGAGAAC 57.776 55.000 0.00 0.00 0.00 3.01
145 146 1.713647 TGAGGTGGAGGAGAGAGAACT 59.286 52.381 0.00 0.00 0.00 3.01
146 147 2.291282 TGAGGTGGAGGAGAGAGAACTC 60.291 54.545 0.00 0.00 42.90 3.01
147 148 1.713647 AGGTGGAGGAGAGAGAACTCA 59.286 52.381 4.64 0.00 44.79 3.41
148 149 2.314549 AGGTGGAGGAGAGAGAACTCAT 59.685 50.000 4.64 0.00 44.79 2.90
149 150 3.529734 AGGTGGAGGAGAGAGAACTCATA 59.470 47.826 4.64 0.00 44.79 2.15
150 151 4.017037 AGGTGGAGGAGAGAGAACTCATAA 60.017 45.833 4.64 0.00 44.79 1.90
151 152 4.340950 GGTGGAGGAGAGAGAACTCATAAG 59.659 50.000 4.64 0.00 44.79 1.73
152 153 5.197451 GTGGAGGAGAGAGAACTCATAAGA 58.803 45.833 4.64 0.00 44.79 2.10
154 155 5.192722 TGGAGGAGAGAGAACTCATAAGAGA 59.807 44.000 1.17 0.00 44.98 3.10
155 156 6.126409 GGAGGAGAGAGAACTCATAAGAGAA 58.874 44.000 1.17 0.00 44.98 2.87
156 157 6.263168 GGAGGAGAGAGAACTCATAAGAGAAG 59.737 46.154 1.17 0.00 44.98 2.85
157 158 6.129179 AGGAGAGAGAACTCATAAGAGAAGG 58.871 44.000 1.17 0.00 44.98 3.46
158 159 5.221244 GGAGAGAGAACTCATAAGAGAAGGC 60.221 48.000 1.17 0.00 44.98 4.35
159 160 5.518865 AGAGAGAACTCATAAGAGAAGGCT 58.481 41.667 1.17 0.00 44.98 4.58
160 161 5.957774 AGAGAGAACTCATAAGAGAAGGCTT 59.042 40.000 0.00 0.00 44.98 4.35
161 162 5.976458 AGAGAACTCATAAGAGAAGGCTTG 58.024 41.667 3.46 0.00 44.98 4.01
162 163 5.483583 AGAGAACTCATAAGAGAAGGCTTGT 59.516 40.000 3.46 0.00 44.98 3.16
163 164 5.729510 AGAACTCATAAGAGAAGGCTTGTC 58.270 41.667 16.04 16.04 44.98 3.18
164 165 5.483583 AGAACTCATAAGAGAAGGCTTGTCT 59.516 40.000 20.19 20.19 44.98 3.41
165 166 5.753721 ACTCATAAGAGAAGGCTTGTCTT 57.246 39.130 33.39 33.39 44.98 3.01
166 167 6.120507 ACTCATAAGAGAAGGCTTGTCTTT 57.879 37.500 35.21 23.05 44.98 2.52
167 168 6.538263 ACTCATAAGAGAAGGCTTGTCTTTT 58.462 36.000 35.21 27.27 44.98 2.27
168 169 6.652900 ACTCATAAGAGAAGGCTTGTCTTTTC 59.347 38.462 35.21 8.38 44.98 2.29
169 170 6.773638 TCATAAGAGAAGGCTTGTCTTTTCT 58.226 36.000 35.21 21.51 39.96 2.52
170 171 7.227156 TCATAAGAGAAGGCTTGTCTTTTCTT 58.773 34.615 35.21 19.33 44.77 2.52
171 172 8.375506 TCATAAGAGAAGGCTTGTCTTTTCTTA 58.624 33.333 35.21 22.02 45.71 2.10
173 174 9.746457 ATAAGAGAAGGCTTGTCTTTTCTTATT 57.254 29.630 35.21 17.47 46.94 1.40
174 175 8.470657 AAGAGAAGGCTTGTCTTTTCTTATTT 57.529 30.769 28.21 8.43 42.56 1.40
175 176 9.574516 AAGAGAAGGCTTGTCTTTTCTTATTTA 57.425 29.630 28.21 0.00 42.56 1.40
176 177 9.574516 AGAGAAGGCTTGTCTTTTCTTATTTAA 57.425 29.630 20.19 0.00 35.51 1.52
177 178 9.833182 GAGAAGGCTTGTCTTTTCTTATTTAAG 57.167 33.333 16.47 0.00 30.49 1.85
178 179 9.574516 AGAAGGCTTGTCTTTTCTTATTTAAGA 57.425 29.630 3.46 0.00 40.33 2.10
213 214 9.177608 GAGATGATCTCTTAGCACTATATGTCT 57.822 37.037 14.98 0.00 40.30 3.41
214 215 9.177608 AGATGATCTCTTAGCACTATATGTCTC 57.822 37.037 0.00 0.00 0.00 3.36
215 216 8.876303 ATGATCTCTTAGCACTATATGTCTCA 57.124 34.615 0.00 0.00 0.00 3.27
216 217 8.105097 TGATCTCTTAGCACTATATGTCTCAC 57.895 38.462 0.00 0.00 0.00 3.51
217 218 6.885952 TCTCTTAGCACTATATGTCTCACC 57.114 41.667 0.00 0.00 0.00 4.02
218 219 6.365520 TCTCTTAGCACTATATGTCTCACCA 58.634 40.000 0.00 0.00 0.00 4.17
219 220 7.007116 TCTCTTAGCACTATATGTCTCACCAT 58.993 38.462 0.00 0.00 0.00 3.55
220 221 8.164070 TCTCTTAGCACTATATGTCTCACCATA 58.836 37.037 0.00 0.00 0.00 2.74
221 222 8.885693 TCTTAGCACTATATGTCTCACCATAT 57.114 34.615 0.00 0.00 40.32 1.78
222 223 9.314133 TCTTAGCACTATATGTCTCACCATATT 57.686 33.333 0.00 0.00 38.60 1.28
223 224 9.935241 CTTAGCACTATATGTCTCACCATATTT 57.065 33.333 0.00 0.00 38.60 1.40
234 235 7.771183 TGTCTCACCATATTTTTAGGAATTGC 58.229 34.615 0.00 0.00 0.00 3.56
235 236 7.615365 TGTCTCACCATATTTTTAGGAATTGCT 59.385 33.333 4.41 4.41 0.00 3.91
236 237 9.120538 GTCTCACCATATTTTTAGGAATTGCTA 57.879 33.333 2.04 2.04 0.00 3.49
237 238 9.342308 TCTCACCATATTTTTAGGAATTGCTAG 57.658 33.333 6.79 0.00 0.00 3.42
238 239 9.125026 CTCACCATATTTTTAGGAATTGCTAGT 57.875 33.333 6.79 0.00 0.00 2.57
239 240 9.474313 TCACCATATTTTTAGGAATTGCTAGTT 57.526 29.630 6.79 0.00 0.00 2.24
252 253 9.566432 AGGAATTGCTAGTTATTGAAGATAAGG 57.434 33.333 0.00 0.00 0.00 2.69
253 254 8.293157 GGAATTGCTAGTTATTGAAGATAAGGC 58.707 37.037 0.00 0.00 0.00 4.35
254 255 8.986929 AATTGCTAGTTATTGAAGATAAGGCT 57.013 30.769 0.00 0.00 0.00 4.58
257 258 9.547753 TTGCTAGTTATTGAAGATAAGGCTAAG 57.452 33.333 0.00 0.00 0.00 2.18
258 259 8.150945 TGCTAGTTATTGAAGATAAGGCTAAGG 58.849 37.037 0.00 0.00 0.00 2.69
259 260 7.604545 GCTAGTTATTGAAGATAAGGCTAAGGG 59.395 40.741 0.00 0.00 0.00 3.95
260 261 7.691993 AGTTATTGAAGATAAGGCTAAGGGA 57.308 36.000 0.00 0.00 0.00 4.20
261 262 8.281529 AGTTATTGAAGATAAGGCTAAGGGAT 57.718 34.615 0.00 0.00 0.00 3.85
262 263 8.160106 AGTTATTGAAGATAAGGCTAAGGGATG 58.840 37.037 0.00 0.00 0.00 3.51
263 264 6.770286 ATTGAAGATAAGGCTAAGGGATGA 57.230 37.500 0.00 0.00 0.00 2.92
264 265 5.552870 TGAAGATAAGGCTAAGGGATGAC 57.447 43.478 0.00 0.00 0.00 3.06
265 266 4.348168 TGAAGATAAGGCTAAGGGATGACC 59.652 45.833 0.00 0.00 40.67 4.02
281 282 6.530019 GGATGACCCATTGTAGACATTTTT 57.470 37.500 0.00 0.00 34.14 1.94
309 310 9.624697 TTGTCATCTCTAAATTACATGCAAAAC 57.375 29.630 0.00 0.00 0.00 2.43
310 311 9.013229 TGTCATCTCTAAATTACATGCAAAACT 57.987 29.630 0.00 0.00 0.00 2.66
311 312 9.846248 GTCATCTCTAAATTACATGCAAAACTT 57.154 29.630 0.00 0.00 0.00 2.66
342 343 7.956328 AGACTATCTTATCAACCACTGTACA 57.044 36.000 0.00 0.00 0.00 2.90
343 344 8.540507 AGACTATCTTATCAACCACTGTACAT 57.459 34.615 0.00 0.00 0.00 2.29
344 345 8.417106 AGACTATCTTATCAACCACTGTACATG 58.583 37.037 0.00 0.00 0.00 3.21
345 346 6.986817 ACTATCTTATCAACCACTGTACATGC 59.013 38.462 0.00 0.00 0.00 4.06
346 347 4.513442 TCTTATCAACCACTGTACATGCC 58.487 43.478 0.00 0.00 0.00 4.40
347 348 2.128771 ATCAACCACTGTACATGCCC 57.871 50.000 0.00 0.00 0.00 5.36
348 349 0.037590 TCAACCACTGTACATGCCCC 59.962 55.000 0.00 0.00 0.00 5.80
349 350 0.038166 CAACCACTGTACATGCCCCT 59.962 55.000 0.00 0.00 0.00 4.79
350 351 1.280710 CAACCACTGTACATGCCCCTA 59.719 52.381 0.00 0.00 0.00 3.53
351 352 1.663911 ACCACTGTACATGCCCCTAA 58.336 50.000 0.00 0.00 0.00 2.69
352 353 1.989586 ACCACTGTACATGCCCCTAAA 59.010 47.619 0.00 0.00 0.00 1.85
353 354 2.580783 ACCACTGTACATGCCCCTAAAT 59.419 45.455 0.00 0.00 0.00 1.40
354 355 3.011257 ACCACTGTACATGCCCCTAAATT 59.989 43.478 0.00 0.00 0.00 1.82
355 356 4.228666 ACCACTGTACATGCCCCTAAATTA 59.771 41.667 0.00 0.00 0.00 1.40
356 357 4.821805 CCACTGTACATGCCCCTAAATTAG 59.178 45.833 0.00 0.00 0.00 1.73
357 358 5.397447 CCACTGTACATGCCCCTAAATTAGA 60.397 44.000 0.83 0.00 0.00 2.10
358 359 5.527582 CACTGTACATGCCCCTAAATTAGAC 59.472 44.000 0.83 0.00 0.00 2.59
359 360 5.428783 ACTGTACATGCCCCTAAATTAGACT 59.571 40.000 0.83 0.00 0.00 3.24
360 361 6.614087 ACTGTACATGCCCCTAAATTAGACTA 59.386 38.462 0.83 0.00 0.00 2.59
361 362 7.126726 ACTGTACATGCCCCTAAATTAGACTAA 59.873 37.037 0.83 0.00 0.00 2.24
362 363 7.277396 TGTACATGCCCCTAAATTAGACTAAC 58.723 38.462 0.83 0.00 0.00 2.34
363 364 6.576778 ACATGCCCCTAAATTAGACTAACT 57.423 37.500 0.83 0.00 0.00 2.24
364 365 6.357367 ACATGCCCCTAAATTAGACTAACTG 58.643 40.000 0.83 0.00 0.00 3.16
365 366 5.367945 TGCCCCTAAATTAGACTAACTGG 57.632 43.478 0.83 0.00 0.00 4.00
377 378 5.793030 AGACTAACTGGATCTAATTCGGG 57.207 43.478 0.00 0.00 0.00 5.14
379 380 3.967987 ACTAACTGGATCTAATTCGGGCT 59.032 43.478 0.00 0.00 0.00 5.19
464 465 9.421399 AGCTACATTTATACCTTTTTAATGGCT 57.579 29.630 0.00 0.00 32.04 4.75
474 475 9.884636 ATACCTTTTTAATGGCTAAATTTGACC 57.115 29.630 0.00 2.64 29.52 4.02
482 493 5.606348 TGGCTAAATTTGACCAAGTTTGT 57.394 34.783 10.61 0.00 33.31 2.83
595 607 5.419788 TGTCATAAATGCTGGCATTCTTTCT 59.580 36.000 19.12 7.73 44.86 2.52
672 685 1.004862 GGGGGCTGCTAATCCTAATCC 59.995 57.143 0.00 0.00 0.00 3.01
673 686 1.988846 GGGGCTGCTAATCCTAATCCT 59.011 52.381 0.00 0.00 0.00 3.24
674 687 3.182152 GGGGCTGCTAATCCTAATCCTA 58.818 50.000 0.00 0.00 0.00 2.94
675 688 3.587506 GGGGCTGCTAATCCTAATCCTAA 59.412 47.826 0.00 0.00 0.00 2.69
676 689 4.228438 GGGGCTGCTAATCCTAATCCTAAT 59.772 45.833 0.00 0.00 0.00 1.73
677 690 5.432645 GGGCTGCTAATCCTAATCCTAATC 58.567 45.833 0.00 0.00 0.00 1.75
735 751 3.991051 CCGGCGACCAGTGACTGT 61.991 66.667 9.30 0.00 0.00 3.55
736 752 2.734723 CGGCGACCAGTGACTGTG 60.735 66.667 12.15 5.73 0.00 3.66
737 753 2.734591 GGCGACCAGTGACTGTGA 59.265 61.111 12.15 0.00 0.00 3.58
738 754 1.373497 GGCGACCAGTGACTGTGAG 60.373 63.158 12.15 3.15 0.00 3.51
742 758 0.941463 GACCAGTGACTGTGAGTGCG 60.941 60.000 12.15 0.00 0.00 5.34
743 759 2.313172 CCAGTGACTGTGAGTGCGC 61.313 63.158 12.15 0.00 0.00 6.09
766 782 3.894547 ATCCCGTCGCGCAAAAGGT 62.895 57.895 8.75 0.00 0.00 3.50
822 842 2.227089 CTACCCGAGCTCACCCACAC 62.227 65.000 15.40 0.00 0.00 3.82
876 899 2.108566 CAGAGGAGGAGCGCCATG 59.891 66.667 9.88 0.00 36.29 3.66
891 915 3.208594 CGCCATGATTTGATCCTCTGAA 58.791 45.455 0.00 0.00 0.00 3.02
904 928 1.373570 CTCTGAATCTTTCCCCACGC 58.626 55.000 0.00 0.00 0.00 5.34
905 929 0.035439 TCTGAATCTTTCCCCACGCC 60.035 55.000 0.00 0.00 0.00 5.68
951 975 4.758251 CCCGCGGATCACACAGCA 62.758 66.667 30.73 0.00 0.00 4.41
1208 1263 2.646175 CGTTCTTCGCAGGGGAGGA 61.646 63.158 0.00 0.00 0.00 3.71
1437 1492 0.323178 TCTCCGCGTTCCTCTACCTT 60.323 55.000 4.92 0.00 0.00 3.50
1470 1525 3.056328 GGGTCGGTTGGCAGCTTC 61.056 66.667 0.24 0.00 0.00 3.86
1471 1526 2.032681 GGTCGGTTGGCAGCTTCT 59.967 61.111 0.24 0.00 0.00 2.85
1629 1685 2.355837 GCCGCGTTCTCTGTGTCA 60.356 61.111 4.92 0.00 0.00 3.58
1677 1733 2.542907 CGTGGTTTGCGCTGAAGGT 61.543 57.895 9.73 0.00 0.00 3.50
1679 1735 1.453015 TGGTTTGCGCTGAAGGTGT 60.453 52.632 9.73 0.00 0.00 4.16
1683 1739 1.495584 TTTGCGCTGAAGGTGTCGTC 61.496 55.000 9.73 0.00 0.00 4.20
1872 2161 3.374058 CCAAAATCCGTTGCGACTTAGAT 59.626 43.478 1.84 0.00 0.00 1.98
1873 2162 4.142687 CCAAAATCCGTTGCGACTTAGATT 60.143 41.667 1.84 5.43 0.00 2.40
1998 2290 4.022329 ACTGCCTGTTATTGCCAACTAAAC 60.022 41.667 0.00 0.00 0.00 2.01
2382 2703 6.128035 CGAGTTAGCTGCTACTGATGAGATAT 60.128 42.308 9.27 0.00 0.00 1.63
2489 2810 2.428960 TAGAAACCGTGCTGCGCTCA 62.429 55.000 9.73 3.52 39.71 4.26
2633 2956 6.445451 AAATACCACAGATCCAGCATATCT 57.555 37.500 0.00 0.00 33.94 1.98
2770 3093 4.844349 TTGCCAGTAAAAGCTAGATCCT 57.156 40.909 0.00 0.00 0.00 3.24
2774 3097 5.602561 TGCCAGTAAAAGCTAGATCCTCATA 59.397 40.000 0.00 0.00 0.00 2.15
2856 3182 2.683211 AATGTGGCAAGGAGGAACTT 57.317 45.000 0.00 0.00 41.55 2.66
2893 3302 8.911918 ATGTTTACTGATGGTTTGTACTTGTA 57.088 30.769 0.00 0.00 0.00 2.41
2948 3357 4.781934 ACCCACTTAATGAATAGGTCTGC 58.218 43.478 0.00 0.00 0.00 4.26
2991 3400 4.023707 AGTTTCACAGTTCTTGTATGCTGC 60.024 41.667 0.00 0.00 38.16 5.25
2994 3403 3.748048 TCACAGTTCTTGTATGCTGCTTC 59.252 43.478 0.00 0.00 38.16 3.86
2998 3407 5.939883 ACAGTTCTTGTATGCTGCTTCAATA 59.060 36.000 0.00 0.00 38.56 1.90
3000 3409 7.770433 ACAGTTCTTGTATGCTGCTTCAATATA 59.230 33.333 0.00 0.00 38.56 0.86
3001 3410 8.781196 CAGTTCTTGTATGCTGCTTCAATATAT 58.219 33.333 0.00 0.00 0.00 0.86
3038 3459 8.332777 CTCTTCTGAGTTTCACAAACATTTTC 57.667 34.615 2.16 0.00 43.79 2.29
3043 3464 9.681692 TCTGAGTTTCACAAACATTTTCATATG 57.318 29.630 0.00 0.00 43.79 1.78
3068 3489 8.308931 TGTAATCTGTTTGTCTATTTCTACCGT 58.691 33.333 0.00 0.00 0.00 4.83
3077 3498 5.651139 TGTCTATTTCTACCGTCTTAGCAGT 59.349 40.000 0.00 0.00 0.00 4.40
3094 3515 3.054875 AGCAGTGATGCTTCCTTGACATA 60.055 43.478 0.00 0.00 43.52 2.29
3202 3623 1.605712 CGGTGGACAAGGTCTTCAGAC 60.606 57.143 0.00 0.00 44.04 3.51
3208 3629 1.341531 ACAAGGTCTTCAGACTCACCG 59.658 52.381 6.91 0.00 44.20 4.94
3222 3643 6.431543 TCAGACTCACCGAGGATAAGATAATC 59.568 42.308 0.00 0.00 33.35 1.75
3309 3730 4.500499 AGCATTCTTCCTATTCTGTGCT 57.500 40.909 0.00 0.00 36.91 4.40
3606 4035 2.740981 GTGAGCTCTGATTGGAAGTGTG 59.259 50.000 16.19 0.00 0.00 3.82
3661 4091 5.589855 AGATAACATTCACAATTCGCATGGA 59.410 36.000 0.00 0.00 0.00 3.41
3667 4097 4.582701 TCACAATTCGCATGGAAAAAGT 57.417 36.364 0.00 0.00 38.36 2.66
3681 4111 4.606255 TGGAAAAAGTTTAGGGGGAGATCT 59.394 41.667 0.00 0.00 0.00 2.75
3704 4134 3.510251 CATGTCAATGCGATTCTACGG 57.490 47.619 0.00 0.00 0.00 4.02
3771 4204 5.064452 AGCGTGTGTATGTAGTACAGTACTC 59.936 44.000 16.91 9.37 43.70 2.59
3772 4205 5.728898 GCGTGTGTATGTAGTACAGTACTCC 60.729 48.000 16.91 6.43 43.70 3.85
3773 4206 5.220739 CGTGTGTATGTAGTACAGTACTCCC 60.221 48.000 16.91 9.54 43.70 4.30
3775 4208 6.038050 GTGTGTATGTAGTACAGTACTCCCTC 59.962 46.154 16.91 7.22 43.70 4.30
3776 4209 6.069789 TGTGTATGTAGTACAGTACTCCCTCT 60.070 42.308 16.91 2.16 43.70 3.69
3777 4210 6.260493 GTGTATGTAGTACAGTACTCCCTCTG 59.740 46.154 16.91 0.00 43.70 3.35
3778 4211 4.923516 TGTAGTACAGTACTCCCTCTGT 57.076 45.455 16.91 0.00 45.21 3.41
3779 4212 6.572182 ATGTAGTACAGTACTCCCTCTGTA 57.428 41.667 16.91 0.00 43.39 2.74
3780 4213 6.378661 TGTAGTACAGTACTCCCTCTGTAA 57.621 41.667 16.91 0.00 44.90 2.41
3781 4214 6.782986 TGTAGTACAGTACTCCCTCTGTAAA 58.217 40.000 16.91 0.00 44.90 2.01
3782 4215 6.656693 TGTAGTACAGTACTCCCTCTGTAAAC 59.343 42.308 16.91 6.29 44.90 2.01
3785 4218 7.465116 AGTACAGTACTCCCTCTGTAAACTAA 58.535 38.462 7.48 0.00 44.90 2.24
3786 4219 8.114743 AGTACAGTACTCCCTCTGTAAACTAAT 58.885 37.037 7.48 0.00 44.90 1.73
3787 4220 9.401058 GTACAGTACTCCCTCTGTAAACTAATA 57.599 37.037 3.19 0.00 44.90 0.98
3794 4227 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
3796 4229 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
3850 4360 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3851 4361 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3852 4362 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
3893 4403 5.810587 GGTTCGTTCTAGTGCTGATGAATAA 59.189 40.000 0.00 0.00 0.00 1.40
3894 4404 6.480320 GGTTCGTTCTAGTGCTGATGAATAAT 59.520 38.462 0.00 0.00 0.00 1.28
3897 4407 9.764363 TTCGTTCTAGTGCTGATGAATAATATT 57.236 29.630 0.00 0.00 0.00 1.28
3923 4433 4.917906 AGCTTCAGTTGAATAGTCCCTT 57.082 40.909 0.00 0.00 33.01 3.95
3925 4435 4.287067 AGCTTCAGTTGAATAGTCCCTTCA 59.713 41.667 0.00 0.00 33.01 3.02
3934 4444 6.817765 TGAATAGTCCCTTCATTCACAAAC 57.182 37.500 0.00 0.00 34.58 2.93
3985 4568 7.468141 ACACTACATAGACTGAAATGAGTGA 57.532 36.000 15.61 0.00 36.21 3.41
3991 4574 2.982488 AGACTGAAATGAGTGAAGGGGT 59.018 45.455 0.00 0.00 0.00 4.95
4003 4586 3.333680 AGTGAAGGGGTTACATCACCATT 59.666 43.478 0.00 0.00 42.39 3.16
4004 4587 4.086457 GTGAAGGGGTTACATCACCATTT 58.914 43.478 0.00 0.00 38.79 2.32
4009 4592 4.526650 AGGGGTTACATCACCATTTTTCAC 59.473 41.667 0.00 0.00 38.79 3.18
4045 4628 7.612633 TCCTCTACCGCCAGTTAAAAATATTTT 59.387 33.333 7.64 7.64 0.00 1.82
4070 5076 6.024049 GCCTTATTCTGTTTTTCTCATGACG 58.976 40.000 0.00 0.00 0.00 4.35
4071 5077 6.348540 GCCTTATTCTGTTTTTCTCATGACGT 60.349 38.462 0.00 0.00 0.00 4.34
4102 5108 7.924103 AAATTACTTGCAAGGTAAGAAAACG 57.076 32.000 29.18 1.85 33.50 3.60
4109 5115 4.153475 TGCAAGGTAAGAAAACGTATCTGC 59.847 41.667 4.71 4.78 0.00 4.26
4127 5133 6.922247 ATCTGCAGATTGTTATTGTCTGAG 57.078 37.500 23.75 1.65 41.38 3.35
4172 5178 7.558604 ACTACTCCCGCTGTAAACAAATATAA 58.441 34.615 0.00 0.00 0.00 0.98
4173 5179 6.920569 ACTCCCGCTGTAAACAAATATAAG 57.079 37.500 0.00 0.00 0.00 1.73
4175 5181 6.537660 ACTCCCGCTGTAAACAAATATAAGAC 59.462 38.462 0.00 0.00 0.00 3.01
4176 5182 5.521010 TCCCGCTGTAAACAAATATAAGACG 59.479 40.000 0.00 0.00 0.00 4.18
4177 5183 5.292589 CCCGCTGTAAACAAATATAAGACGT 59.707 40.000 0.00 0.00 0.00 4.34
4178 5184 6.408428 CCGCTGTAAACAAATATAAGACGTC 58.592 40.000 7.70 7.70 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.137543 GTGTTGGAAATATGCCCTAGAGG 58.862 47.826 0.00 0.00 39.47 3.69
52 53 5.041191 AGTGTTGGAAATATGCCCTAGAG 57.959 43.478 0.00 0.00 0.00 2.43
53 54 5.450818 AAGTGTTGGAAATATGCCCTAGA 57.549 39.130 0.00 0.00 0.00 2.43
54 55 5.765182 CCTAAGTGTTGGAAATATGCCCTAG 59.235 44.000 0.00 0.00 0.00 3.02
55 56 5.398581 CCCTAAGTGTTGGAAATATGCCCTA 60.399 44.000 0.00 0.00 0.00 3.53
56 57 4.536765 CCTAAGTGTTGGAAATATGCCCT 58.463 43.478 0.00 0.00 0.00 5.19
57 58 3.636764 CCCTAAGTGTTGGAAATATGCCC 59.363 47.826 0.00 0.00 0.00 5.36
58 59 3.068165 GCCCTAAGTGTTGGAAATATGCC 59.932 47.826 0.00 0.00 0.00 4.40
59 60 3.699038 TGCCCTAAGTGTTGGAAATATGC 59.301 43.478 0.00 0.00 0.00 3.14
60 61 5.360714 ACATGCCCTAAGTGTTGGAAATATG 59.639 40.000 0.00 0.00 0.00 1.78
61 62 5.518865 ACATGCCCTAAGTGTTGGAAATAT 58.481 37.500 0.00 0.00 0.00 1.28
62 63 4.929479 ACATGCCCTAAGTGTTGGAAATA 58.071 39.130 0.00 0.00 0.00 1.40
63 64 3.778265 ACATGCCCTAAGTGTTGGAAAT 58.222 40.909 0.00 0.00 0.00 2.17
64 65 3.237268 ACATGCCCTAAGTGTTGGAAA 57.763 42.857 0.00 0.00 0.00 3.13
65 66 2.969821 ACATGCCCTAAGTGTTGGAA 57.030 45.000 0.00 0.00 0.00 3.53
66 67 2.640332 TGTACATGCCCTAAGTGTTGGA 59.360 45.455 0.00 0.00 0.00 3.53
67 68 3.066291 TGTACATGCCCTAAGTGTTGG 57.934 47.619 0.00 0.00 0.00 3.77
68 69 4.142403 CCATTGTACATGCCCTAAGTGTTG 60.142 45.833 0.00 0.00 0.00 3.33
69 70 4.016444 CCATTGTACATGCCCTAAGTGTT 58.984 43.478 0.00 0.00 0.00 3.32
70 71 3.010138 ACCATTGTACATGCCCTAAGTGT 59.990 43.478 0.00 0.00 0.00 3.55
71 72 3.378112 CACCATTGTACATGCCCTAAGTG 59.622 47.826 0.00 0.00 0.00 3.16
72 73 3.620488 CACCATTGTACATGCCCTAAGT 58.380 45.455 0.00 0.00 0.00 2.24
73 74 2.358898 GCACCATTGTACATGCCCTAAG 59.641 50.000 7.77 0.00 31.71 2.18
74 75 2.025416 AGCACCATTGTACATGCCCTAA 60.025 45.455 14.08 0.00 38.92 2.69
75 76 1.563879 AGCACCATTGTACATGCCCTA 59.436 47.619 14.08 0.00 38.92 3.53
76 77 0.332632 AGCACCATTGTACATGCCCT 59.667 50.000 14.08 0.00 38.92 5.19
77 78 2.051334 TAGCACCATTGTACATGCCC 57.949 50.000 14.08 0.00 38.92 5.36
78 79 3.480470 AGATAGCACCATTGTACATGCC 58.520 45.455 14.08 1.71 38.92 4.40
79 80 5.991606 TCTAAGATAGCACCATTGTACATGC 59.008 40.000 10.53 10.53 38.39 4.06
80 81 7.712639 ACTTCTAAGATAGCACCATTGTACATG 59.287 37.037 0.00 0.00 0.00 3.21
81 82 7.712639 CACTTCTAAGATAGCACCATTGTACAT 59.287 37.037 0.00 0.00 0.00 2.29
82 83 7.041721 CACTTCTAAGATAGCACCATTGTACA 58.958 38.462 0.00 0.00 0.00 2.90
83 84 6.018669 GCACTTCTAAGATAGCACCATTGTAC 60.019 42.308 0.00 0.00 0.00 2.90
84 85 6.049149 GCACTTCTAAGATAGCACCATTGTA 58.951 40.000 0.00 0.00 0.00 2.41
85 86 4.878397 GCACTTCTAAGATAGCACCATTGT 59.122 41.667 0.00 0.00 0.00 2.71
86 87 4.274459 GGCACTTCTAAGATAGCACCATTG 59.726 45.833 0.00 0.00 0.00 2.82
87 88 4.080356 TGGCACTTCTAAGATAGCACCATT 60.080 41.667 0.00 0.00 0.00 3.16
88 89 3.455910 TGGCACTTCTAAGATAGCACCAT 59.544 43.478 0.00 0.00 0.00 3.55
89 90 2.837591 TGGCACTTCTAAGATAGCACCA 59.162 45.455 0.00 0.00 0.00 4.17
90 91 3.543680 TGGCACTTCTAAGATAGCACC 57.456 47.619 0.00 0.00 0.00 5.01
91 92 4.446371 ACATGGCACTTCTAAGATAGCAC 58.554 43.478 0.00 0.00 0.00 4.40
92 93 4.760530 ACATGGCACTTCTAAGATAGCA 57.239 40.909 0.00 0.00 0.00 3.49
93 94 5.011125 TCCTACATGGCACTTCTAAGATAGC 59.989 44.000 0.00 0.00 35.26 2.97
94 95 6.656632 TCCTACATGGCACTTCTAAGATAG 57.343 41.667 0.00 0.00 35.26 2.08
95 96 8.721133 TTATCCTACATGGCACTTCTAAGATA 57.279 34.615 0.00 0.00 35.26 1.98
96 97 7.618019 TTATCCTACATGGCACTTCTAAGAT 57.382 36.000 0.00 0.00 35.26 2.40
97 98 7.432148 TTTATCCTACATGGCACTTCTAAGA 57.568 36.000 0.00 0.00 35.26 2.10
98 99 7.933577 TCATTTATCCTACATGGCACTTCTAAG 59.066 37.037 0.00 0.00 35.26 2.18
99 100 7.801104 TCATTTATCCTACATGGCACTTCTAA 58.199 34.615 0.00 0.00 35.26 2.10
100 101 7.373617 TCATTTATCCTACATGGCACTTCTA 57.626 36.000 0.00 0.00 35.26 2.10
101 102 6.252599 TCATTTATCCTACATGGCACTTCT 57.747 37.500 0.00 0.00 35.26 2.85
102 103 6.712095 TCATCATTTATCCTACATGGCACTTC 59.288 38.462 0.00 0.00 35.26 3.01
103 104 6.604171 TCATCATTTATCCTACATGGCACTT 58.396 36.000 0.00 0.00 35.26 3.16
104 105 6.191657 TCATCATTTATCCTACATGGCACT 57.808 37.500 0.00 0.00 35.26 4.40
105 106 5.413833 CCTCATCATTTATCCTACATGGCAC 59.586 44.000 0.00 0.00 35.26 5.01
106 107 5.073554 ACCTCATCATTTATCCTACATGGCA 59.926 40.000 0.00 0.00 35.26 4.92
107 108 5.413833 CACCTCATCATTTATCCTACATGGC 59.586 44.000 0.00 0.00 35.26 4.40
108 109 5.942236 CCACCTCATCATTTATCCTACATGG 59.058 44.000 0.00 0.00 37.10 3.66
109 110 6.772605 TCCACCTCATCATTTATCCTACATG 58.227 40.000 0.00 0.00 0.00 3.21
110 111 6.013032 CCTCCACCTCATCATTTATCCTACAT 60.013 42.308 0.00 0.00 0.00 2.29
111 112 5.307976 CCTCCACCTCATCATTTATCCTACA 59.692 44.000 0.00 0.00 0.00 2.74
112 113 5.544176 TCCTCCACCTCATCATTTATCCTAC 59.456 44.000 0.00 0.00 0.00 3.18
113 114 5.726560 TCCTCCACCTCATCATTTATCCTA 58.273 41.667 0.00 0.00 0.00 2.94
114 115 4.570926 TCCTCCACCTCATCATTTATCCT 58.429 43.478 0.00 0.00 0.00 3.24
115 116 4.594920 TCTCCTCCACCTCATCATTTATCC 59.405 45.833 0.00 0.00 0.00 2.59
116 117 5.541868 TCTCTCCTCCACCTCATCATTTATC 59.458 44.000 0.00 0.00 0.00 1.75
117 118 5.471424 TCTCTCCTCCACCTCATCATTTAT 58.529 41.667 0.00 0.00 0.00 1.40
118 119 4.883759 TCTCTCCTCCACCTCATCATTTA 58.116 43.478 0.00 0.00 0.00 1.40
119 120 3.710677 CTCTCTCCTCCACCTCATCATTT 59.289 47.826 0.00 0.00 0.00 2.32
120 121 3.052262 TCTCTCTCCTCCACCTCATCATT 60.052 47.826 0.00 0.00 0.00 2.57
121 122 2.517553 TCTCTCTCCTCCACCTCATCAT 59.482 50.000 0.00 0.00 0.00 2.45
122 123 1.925959 TCTCTCTCCTCCACCTCATCA 59.074 52.381 0.00 0.00 0.00 3.07
123 124 2.693074 GTTCTCTCTCCTCCACCTCATC 59.307 54.545 0.00 0.00 0.00 2.92
124 125 2.314549 AGTTCTCTCTCCTCCACCTCAT 59.685 50.000 0.00 0.00 0.00 2.90
125 126 1.713647 AGTTCTCTCTCCTCCACCTCA 59.286 52.381 0.00 0.00 0.00 3.86
126 127 2.291282 TGAGTTCTCTCTCCTCCACCTC 60.291 54.545 1.53 0.00 40.98 3.85
127 128 1.713647 TGAGTTCTCTCTCCTCCACCT 59.286 52.381 1.53 0.00 40.98 4.00
128 129 2.223803 TGAGTTCTCTCTCCTCCACC 57.776 55.000 1.53 0.00 40.98 4.61
129 130 5.197451 TCTTATGAGTTCTCTCTCCTCCAC 58.803 45.833 1.53 0.00 40.98 4.02
130 131 5.192722 TCTCTTATGAGTTCTCTCTCCTCCA 59.807 44.000 5.60 0.00 40.98 3.86
131 132 5.690865 TCTCTTATGAGTTCTCTCTCCTCC 58.309 45.833 5.60 0.00 40.98 4.30
132 133 6.263168 CCTTCTCTTATGAGTTCTCTCTCCTC 59.737 46.154 5.60 0.00 40.98 3.71
133 134 6.129179 CCTTCTCTTATGAGTTCTCTCTCCT 58.871 44.000 5.60 0.00 40.98 3.69
134 135 5.221244 GCCTTCTCTTATGAGTTCTCTCTCC 60.221 48.000 5.60 0.00 40.98 3.71
135 136 5.594317 AGCCTTCTCTTATGAGTTCTCTCTC 59.406 44.000 5.60 0.00 40.98 3.20
136 137 5.518865 AGCCTTCTCTTATGAGTTCTCTCT 58.481 41.667 5.60 0.00 40.98 3.10
137 138 5.852282 AGCCTTCTCTTATGAGTTCTCTC 57.148 43.478 5.60 0.00 40.98 3.20
138 139 5.483583 ACAAGCCTTCTCTTATGAGTTCTCT 59.516 40.000 5.60 0.00 40.98 3.10
139 140 5.729510 ACAAGCCTTCTCTTATGAGTTCTC 58.270 41.667 5.60 0.00 40.98 2.87
140 141 5.483583 AGACAAGCCTTCTCTTATGAGTTCT 59.516 40.000 5.60 0.00 40.98 3.01
141 142 5.729510 AGACAAGCCTTCTCTTATGAGTTC 58.270 41.667 5.60 0.00 40.98 3.01
142 143 5.753721 AGACAAGCCTTCTCTTATGAGTT 57.246 39.130 5.60 0.00 40.98 3.01
143 144 5.753721 AAGACAAGCCTTCTCTTATGAGT 57.246 39.130 5.60 0.00 40.98 3.41
144 145 6.878389 AGAAAAGACAAGCCTTCTCTTATGAG 59.122 38.462 0.00 0.00 41.51 2.90
145 146 6.773638 AGAAAAGACAAGCCTTCTCTTATGA 58.226 36.000 0.00 0.00 0.00 2.15
146 147 7.446001 AAGAAAAGACAAGCCTTCTCTTATG 57.554 36.000 0.00 0.00 33.17 1.90
147 148 9.746457 AATAAGAAAAGACAAGCCTTCTCTTAT 57.254 29.630 0.00 0.00 43.14 1.73
148 149 9.574516 AAATAAGAAAAGACAAGCCTTCTCTTA 57.425 29.630 0.00 0.00 38.97 2.10
149 150 8.470657 AAATAAGAAAAGACAAGCCTTCTCTT 57.529 30.769 0.00 0.00 37.29 2.85
150 151 9.574516 TTAAATAAGAAAAGACAAGCCTTCTCT 57.425 29.630 0.00 0.00 0.00 3.10
151 152 9.833182 CTTAAATAAGAAAAGACAAGCCTTCTC 57.167 33.333 0.00 0.00 35.33 2.87
152 153 9.574516 TCTTAAATAAGAAAAGACAAGCCTTCT 57.425 29.630 0.44 0.00 39.22 2.85
187 188 9.177608 AGACATATAGTGCTAAGAGATCATCTC 57.822 37.037 6.55 6.55 43.70 2.75
188 189 9.177608 GAGACATATAGTGCTAAGAGATCATCT 57.822 37.037 0.00 0.00 41.27 2.90
189 190 8.955388 TGAGACATATAGTGCTAAGAGATCATC 58.045 37.037 0.00 0.00 0.00 2.92
190 191 8.739039 GTGAGACATATAGTGCTAAGAGATCAT 58.261 37.037 0.00 0.00 0.00 2.45
191 192 7.175816 GGTGAGACATATAGTGCTAAGAGATCA 59.824 40.741 0.00 0.00 0.00 2.92
192 193 7.175816 TGGTGAGACATATAGTGCTAAGAGATC 59.824 40.741 0.00 0.00 0.00 2.75
193 194 7.007116 TGGTGAGACATATAGTGCTAAGAGAT 58.993 38.462 0.00 0.00 0.00 2.75
194 195 6.365520 TGGTGAGACATATAGTGCTAAGAGA 58.634 40.000 0.00 0.00 0.00 3.10
195 196 6.641169 TGGTGAGACATATAGTGCTAAGAG 57.359 41.667 0.00 0.00 0.00 2.85
196 197 8.885693 ATATGGTGAGACATATAGTGCTAAGA 57.114 34.615 0.00 0.00 41.09 2.10
197 198 9.935241 AAATATGGTGAGACATATAGTGCTAAG 57.065 33.333 0.00 0.00 41.81 2.18
208 209 8.416329 GCAATTCCTAAAAATATGGTGAGACAT 58.584 33.333 0.00 0.00 34.90 3.06
209 210 7.615365 AGCAATTCCTAAAAATATGGTGAGACA 59.385 33.333 0.00 0.00 0.00 3.41
210 211 8.000780 AGCAATTCCTAAAAATATGGTGAGAC 57.999 34.615 0.00 0.00 0.00 3.36
211 212 9.342308 CTAGCAATTCCTAAAAATATGGTGAGA 57.658 33.333 0.00 0.00 0.00 3.27
212 213 9.125026 ACTAGCAATTCCTAAAAATATGGTGAG 57.875 33.333 0.00 0.00 0.00 3.51
213 214 9.474313 AACTAGCAATTCCTAAAAATATGGTGA 57.526 29.630 0.00 0.00 0.00 4.02
226 227 9.566432 CCTTATCTTCAATAACTAGCAATTCCT 57.434 33.333 0.00 0.00 0.00 3.36
227 228 8.293157 GCCTTATCTTCAATAACTAGCAATTCC 58.707 37.037 0.00 0.00 0.00 3.01
228 229 9.061435 AGCCTTATCTTCAATAACTAGCAATTC 57.939 33.333 0.00 0.00 0.00 2.17
229 230 8.986929 AGCCTTATCTTCAATAACTAGCAATT 57.013 30.769 0.00 0.00 0.00 2.32
231 232 9.547753 CTTAGCCTTATCTTCAATAACTAGCAA 57.452 33.333 0.00 0.00 0.00 3.91
232 233 8.150945 CCTTAGCCTTATCTTCAATAACTAGCA 58.849 37.037 0.00 0.00 0.00 3.49
233 234 7.604545 CCCTTAGCCTTATCTTCAATAACTAGC 59.395 40.741 0.00 0.00 0.00 3.42
234 235 8.871125 TCCCTTAGCCTTATCTTCAATAACTAG 58.129 37.037 0.00 0.00 0.00 2.57
235 236 8.792830 TCCCTTAGCCTTATCTTCAATAACTA 57.207 34.615 0.00 0.00 0.00 2.24
236 237 7.691993 TCCCTTAGCCTTATCTTCAATAACT 57.308 36.000 0.00 0.00 0.00 2.24
237 238 8.157476 TCATCCCTTAGCCTTATCTTCAATAAC 58.843 37.037 0.00 0.00 0.00 1.89
238 239 8.157476 GTCATCCCTTAGCCTTATCTTCAATAA 58.843 37.037 0.00 0.00 0.00 1.40
239 240 7.256691 GGTCATCCCTTAGCCTTATCTTCAATA 60.257 40.741 0.00 0.00 0.00 1.90
240 241 6.466470 GGTCATCCCTTAGCCTTATCTTCAAT 60.466 42.308 0.00 0.00 0.00 2.57
241 242 5.163195 GGTCATCCCTTAGCCTTATCTTCAA 60.163 44.000 0.00 0.00 0.00 2.69
242 243 4.348168 GGTCATCCCTTAGCCTTATCTTCA 59.652 45.833 0.00 0.00 0.00 3.02
243 244 4.900684 GGTCATCCCTTAGCCTTATCTTC 58.099 47.826 0.00 0.00 0.00 2.87
244 245 4.984146 GGTCATCCCTTAGCCTTATCTT 57.016 45.455 0.00 0.00 0.00 2.40
258 259 6.530019 AAAAATGTCTACAATGGGTCATCC 57.470 37.500 0.00 0.00 0.00 3.51
283 284 9.624697 GTTTTGCATGTAATTTAGAGATGACAA 57.375 29.630 0.00 0.00 0.00 3.18
284 285 9.013229 AGTTTTGCATGTAATTTAGAGATGACA 57.987 29.630 0.00 0.00 0.00 3.58
285 286 9.846248 AAGTTTTGCATGTAATTTAGAGATGAC 57.154 29.630 0.00 0.00 0.00 3.06
316 317 9.470399 TGTACAGTGGTTGATAAGATAGTCTTA 57.530 33.333 0.00 2.24 42.49 2.10
317 318 8.362464 TGTACAGTGGTTGATAAGATAGTCTT 57.638 34.615 0.00 0.00 40.35 3.01
318 319 7.956328 TGTACAGTGGTTGATAAGATAGTCT 57.044 36.000 0.00 0.00 0.00 3.24
319 320 7.169982 GCATGTACAGTGGTTGATAAGATAGTC 59.830 40.741 0.33 0.00 0.00 2.59
320 321 6.986817 GCATGTACAGTGGTTGATAAGATAGT 59.013 38.462 0.33 0.00 0.00 2.12
321 322 6.425114 GGCATGTACAGTGGTTGATAAGATAG 59.575 42.308 0.33 0.00 0.00 2.08
322 323 6.288294 GGCATGTACAGTGGTTGATAAGATA 58.712 40.000 0.33 0.00 0.00 1.98
323 324 5.126067 GGCATGTACAGTGGTTGATAAGAT 58.874 41.667 0.33 0.00 0.00 2.40
324 325 4.513442 GGCATGTACAGTGGTTGATAAGA 58.487 43.478 0.33 0.00 0.00 2.10
325 326 3.627577 GGGCATGTACAGTGGTTGATAAG 59.372 47.826 0.33 0.00 0.00 1.73
326 327 3.616219 GGGCATGTACAGTGGTTGATAA 58.384 45.455 0.33 0.00 0.00 1.75
327 328 2.092646 GGGGCATGTACAGTGGTTGATA 60.093 50.000 0.33 0.00 0.00 2.15
328 329 1.340991 GGGGCATGTACAGTGGTTGAT 60.341 52.381 0.33 0.00 0.00 2.57
329 330 0.037590 GGGGCATGTACAGTGGTTGA 59.962 55.000 0.33 0.00 0.00 3.18
330 331 0.038166 AGGGGCATGTACAGTGGTTG 59.962 55.000 0.33 0.00 0.00 3.77
331 332 1.663911 TAGGGGCATGTACAGTGGTT 58.336 50.000 0.33 0.00 0.00 3.67
332 333 1.663911 TTAGGGGCATGTACAGTGGT 58.336 50.000 0.33 0.00 0.00 4.16
333 334 2.799126 TTTAGGGGCATGTACAGTGG 57.201 50.000 0.33 0.00 0.00 4.00
334 335 5.527582 GTCTAATTTAGGGGCATGTACAGTG 59.472 44.000 0.33 1.44 0.00 3.66
335 336 5.428783 AGTCTAATTTAGGGGCATGTACAGT 59.571 40.000 0.33 0.00 0.00 3.55
336 337 5.930135 AGTCTAATTTAGGGGCATGTACAG 58.070 41.667 0.33 0.00 0.00 2.74
337 338 5.968676 AGTCTAATTTAGGGGCATGTACA 57.031 39.130 0.00 0.00 0.00 2.90
338 339 7.441458 CAGTTAGTCTAATTTAGGGGCATGTAC 59.559 40.741 3.66 0.00 0.00 2.90
339 340 7.419750 CCAGTTAGTCTAATTTAGGGGCATGTA 60.420 40.741 3.66 0.00 0.00 2.29
340 341 6.357367 CAGTTAGTCTAATTTAGGGGCATGT 58.643 40.000 3.66 0.00 0.00 3.21
341 342 5.765182 CCAGTTAGTCTAATTTAGGGGCATG 59.235 44.000 3.66 0.00 0.00 4.06
342 343 5.670361 TCCAGTTAGTCTAATTTAGGGGCAT 59.330 40.000 3.66 0.00 0.00 4.40
343 344 5.034200 TCCAGTTAGTCTAATTTAGGGGCA 58.966 41.667 3.66 0.00 0.00 5.36
344 345 5.625568 TCCAGTTAGTCTAATTTAGGGGC 57.374 43.478 3.66 0.00 0.00 5.80
345 346 7.619512 AGATCCAGTTAGTCTAATTTAGGGG 57.380 40.000 3.66 0.00 0.00 4.79
350 351 9.765795 CCGAATTAGATCCAGTTAGTCTAATTT 57.234 33.333 16.28 5.48 46.81 1.82
352 353 7.525692 GCCCGAATTAGATCCAGTTAGTCTAAT 60.526 40.741 0.00 0.00 43.41 1.73
353 354 6.239232 GCCCGAATTAGATCCAGTTAGTCTAA 60.239 42.308 0.00 0.00 38.42 2.10
354 355 5.243283 GCCCGAATTAGATCCAGTTAGTCTA 59.757 44.000 0.00 0.00 0.00 2.59
355 356 4.039366 GCCCGAATTAGATCCAGTTAGTCT 59.961 45.833 0.00 0.00 0.00 3.24
356 357 4.039366 AGCCCGAATTAGATCCAGTTAGTC 59.961 45.833 0.00 0.00 0.00 2.59
357 358 3.967987 AGCCCGAATTAGATCCAGTTAGT 59.032 43.478 0.00 0.00 0.00 2.24
358 359 4.608948 AGCCCGAATTAGATCCAGTTAG 57.391 45.455 0.00 0.00 0.00 2.34
359 360 4.654262 AGAAGCCCGAATTAGATCCAGTTA 59.346 41.667 0.00 0.00 0.00 2.24
360 361 3.456277 AGAAGCCCGAATTAGATCCAGTT 59.544 43.478 0.00 0.00 0.00 3.16
361 362 3.041946 AGAAGCCCGAATTAGATCCAGT 58.958 45.455 0.00 0.00 0.00 4.00
362 363 3.760580 AGAAGCCCGAATTAGATCCAG 57.239 47.619 0.00 0.00 0.00 3.86
363 364 3.433598 CCAAGAAGCCCGAATTAGATCCA 60.434 47.826 0.00 0.00 0.00 3.41
364 365 3.142174 CCAAGAAGCCCGAATTAGATCC 58.858 50.000 0.00 0.00 0.00 3.36
365 366 3.809905 ACCAAGAAGCCCGAATTAGATC 58.190 45.455 0.00 0.00 0.00 2.75
372 373 4.310357 GTTAAAAACCAAGAAGCCCGAA 57.690 40.909 0.00 0.00 0.00 4.30
395 396 2.534042 TTCCAGTTTTCAACCCACCA 57.466 45.000 0.00 0.00 0.00 4.17
399 400 3.751479 AAGCATTCCAGTTTTCAACCC 57.249 42.857 0.00 0.00 0.00 4.11
448 449 9.884636 GGTCAAATTTAGCCATTAAAAAGGTAT 57.115 29.630 0.00 0.00 35.03 2.73
449 450 8.871125 TGGTCAAATTTAGCCATTAAAAAGGTA 58.129 29.630 8.35 0.00 35.03 3.08
450 451 7.740805 TGGTCAAATTTAGCCATTAAAAAGGT 58.259 30.769 8.35 0.00 35.03 3.50
460 461 5.606348 ACAAACTTGGTCAAATTTAGCCA 57.394 34.783 8.35 8.35 0.00 4.75
532 544 9.836076 CATTAGATCCGTCGTGAAAATATAGTA 57.164 33.333 0.00 0.00 0.00 1.82
534 546 8.965986 TCATTAGATCCGTCGTGAAAATATAG 57.034 34.615 0.00 0.00 0.00 1.31
543 555 7.818493 ATTCAATATCATTAGATCCGTCGTG 57.182 36.000 0.00 0.00 35.67 4.35
631 643 7.126061 CCCCCTAGTCAAAATCTTCCTAAAAT 58.874 38.462 0.00 0.00 0.00 1.82
650 663 2.807298 TTAGGATTAGCAGCCCCCTA 57.193 50.000 0.00 0.00 0.00 3.53
672 685 9.508642 GGAACTTTGGATTAGGATTAGGATTAG 57.491 37.037 0.00 0.00 0.00 1.73
673 686 8.445588 GGGAACTTTGGATTAGGATTAGGATTA 58.554 37.037 0.00 0.00 0.00 1.75
674 687 7.298374 GGGAACTTTGGATTAGGATTAGGATT 58.702 38.462 0.00 0.00 0.00 3.01
675 688 6.465894 CGGGAACTTTGGATTAGGATTAGGAT 60.466 42.308 0.00 0.00 0.00 3.24
676 689 5.163237 CGGGAACTTTGGATTAGGATTAGGA 60.163 44.000 0.00 0.00 0.00 2.94
677 690 5.063880 CGGGAACTTTGGATTAGGATTAGG 58.936 45.833 0.00 0.00 0.00 2.69
753 769 1.132640 CAGCTACCTTTTGCGCGAC 59.867 57.895 12.10 0.88 0.00 5.19
795 813 2.123382 GCTCGGGTAGGGTAGGCT 60.123 66.667 0.00 0.00 0.00 4.58
799 819 1.076485 GGTGAGCTCGGGTAGGGTA 60.076 63.158 9.64 0.00 0.00 3.69
876 899 5.534278 GGGGAAAGATTCAGAGGATCAAATC 59.466 44.000 0.00 0.00 38.83 2.17
904 928 0.389948 GCATAGGAAGTATCGCCCGG 60.390 60.000 0.00 0.00 0.00 5.73
905 929 0.732880 CGCATAGGAAGTATCGCCCG 60.733 60.000 0.00 0.00 0.00 6.13
1218 1273 0.399949 TCAGGTCAACCTCCACCACT 60.400 55.000 0.00 0.00 46.65 4.00
1220 1275 1.754380 CGTCAGGTCAACCTCCACCA 61.754 60.000 0.00 0.00 46.65 4.17
1246 1301 3.393970 CCAGGAGAAGGCGAGGCA 61.394 66.667 0.00 0.00 0.00 4.75
1470 1525 6.714278 AGATTTGATTTTGATTGGGGGAAAG 58.286 36.000 0.00 0.00 0.00 2.62
1471 1526 6.700845 AGATTTGATTTTGATTGGGGGAAA 57.299 33.333 0.00 0.00 0.00 3.13
1614 1670 1.125021 GACAATGACACAGAGAACGCG 59.875 52.381 3.53 3.53 0.00 6.01
1623 1679 3.047280 GCGCCCGACAATGACACA 61.047 61.111 0.00 0.00 0.00 3.72
1645 1701 2.974148 CACGCCTGCTGCTGTCAA 60.974 61.111 0.00 0.00 38.05 3.18
1667 1723 3.470567 CGACGACACCTTCAGCGC 61.471 66.667 0.00 0.00 0.00 5.92
1668 1724 2.805353 CCGACGACACCTTCAGCG 60.805 66.667 0.00 0.00 0.00 5.18
1677 1733 3.263503 CTCTGTTCCGCCGACGACA 62.264 63.158 0.00 0.00 43.93 4.35
1679 1735 2.981909 ACTCTGTTCCGCCGACGA 60.982 61.111 0.00 0.00 43.93 4.20
1683 1739 4.680237 TGCCACTCTGTTCCGCCG 62.680 66.667 0.00 0.00 0.00 6.46
1752 1808 4.741676 GGCTTGCCATGAATAATCTTTTCG 59.258 41.667 6.79 0.00 0.00 3.46
1998 2290 2.496899 AGTACAAAGATGGGGCACAG 57.503 50.000 0.00 0.00 0.00 3.66
2382 2703 4.722526 TTTCTTCCTTTGAGGTCATGGA 57.277 40.909 0.00 0.00 36.53 3.41
2489 2810 7.383687 TCGAGACCAAGTTATACTTCAATGTT 58.616 34.615 0.00 0.00 36.03 2.71
2618 2941 6.544931 TGAAAGGAAAAGATATGCTGGATCTG 59.455 38.462 0.00 0.00 33.85 2.90
2633 2956 8.694540 TCATGAAGAAATCAACTGAAAGGAAAA 58.305 29.630 0.00 0.00 42.54 2.29
2686 3009 1.750206 ACTGCATTTGTGCACACTTCA 59.250 42.857 21.56 13.76 40.23 3.02
2687 3010 2.033801 AGACTGCATTTGTGCACACTTC 59.966 45.455 21.56 9.69 40.23 3.01
2737 3060 8.938906 AGCTTTTACTGGCAAATCATTTTAATG 58.061 29.630 0.00 0.00 37.75 1.90
2823 3148 7.178274 TCCTTGCCACATTAATAAGTTTGACAT 59.822 33.333 0.00 0.00 0.00 3.06
2842 3168 4.281941 AGAAATTTCAAGTTCCTCCTTGCC 59.718 41.667 19.99 0.00 41.29 4.52
2863 3189 9.787435 AGTACAAACCATCAGTAAACATTAAGA 57.213 29.630 0.00 0.00 0.00 2.10
2948 3357 4.511527 ACTCTTGGTTCACATGCATCTAG 58.488 43.478 0.00 0.00 0.00 2.43
2959 3368 4.843728 AGAACTGTGAAACTCTTGGTTCA 58.156 39.130 0.00 0.00 37.12 3.18
3018 3438 9.467258 ACATATGAAAATGTTTGTGAAACTCAG 57.533 29.630 10.38 0.00 41.90 3.35
3043 3464 8.699283 ACGGTAGAAATAGACAAACAGATTAC 57.301 34.615 0.00 0.00 0.00 1.89
3049 3470 6.810182 GCTAAGACGGTAGAAATAGACAAACA 59.190 38.462 0.00 0.00 0.00 2.83
3060 3481 3.428999 GCATCACTGCTAAGACGGTAGAA 60.429 47.826 0.00 0.00 45.32 2.10
3094 3515 9.965824 CTAACTTGGACAACACTGAAATTTATT 57.034 29.630 0.00 0.00 0.00 1.40
3222 3643 0.671781 CCACTGAAACAGGAGCGAGG 60.672 60.000 0.00 0.00 35.51 4.63
3309 3730 4.086457 TGATACAGTGAGTGGTCTGCTAA 58.914 43.478 0.00 0.00 35.37 3.09
3509 3938 0.251077 CAAAAGAGCAGGCAGAGGGT 60.251 55.000 0.00 0.00 0.00 4.34
3510 3939 0.251077 ACAAAAGAGCAGGCAGAGGG 60.251 55.000 0.00 0.00 0.00 4.30
3511 3940 0.879765 CACAAAAGAGCAGGCAGAGG 59.120 55.000 0.00 0.00 0.00 3.69
3606 4035 0.389025 CAAAACCTGAGCACAACCCC 59.611 55.000 0.00 0.00 0.00 4.95
3647 4077 5.655893 AAACTTTTTCCATGCGAATTGTG 57.344 34.783 0.00 0.00 0.00 3.33
3661 4091 4.814521 GCCAGATCTCCCCCTAAACTTTTT 60.815 45.833 0.00 0.00 0.00 1.94
3667 4097 1.776667 CATGCCAGATCTCCCCCTAAA 59.223 52.381 0.00 0.00 0.00 1.85
3744 4177 5.877031 ACTGTACTACATACACACGCTAAG 58.123 41.667 0.00 0.00 38.95 2.18
3817 4250 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3819 4252 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3823 4256 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3824 4257 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3825 4258 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3826 4259 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3827 4260 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3831 4264 9.646522 AAATAGTACTCCCTCCGTAAACTAATA 57.353 33.333 0.00 0.00 0.00 0.98
3833 4266 7.961326 AAATAGTACTCCCTCCGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
3839 4272 9.592196 ACATAAATAAATAGTACTCCCTCCGTA 57.408 33.333 0.00 0.00 0.00 4.02
3894 4404 9.982651 GGACTATTCAACTGAAGCTACATAATA 57.017 33.333 0.00 0.00 37.48 0.98
3897 4407 6.611642 AGGGACTATTCAACTGAAGCTACATA 59.388 38.462 0.00 0.00 36.02 2.29
3898 4408 5.426833 AGGGACTATTCAACTGAAGCTACAT 59.573 40.000 0.00 0.00 36.02 2.29
3960 4470 8.575649 TCACTCATTTCAGTCTATGTAGTGTA 57.424 34.615 0.00 0.00 34.79 2.90
3963 4473 7.364232 CCCTTCACTCATTTCAGTCTATGTAGT 60.364 40.741 0.00 0.00 0.00 2.73
3964 4474 6.983307 CCCTTCACTCATTTCAGTCTATGTAG 59.017 42.308 0.00 0.00 0.00 2.74
3965 4475 6.127054 CCCCTTCACTCATTTCAGTCTATGTA 60.127 42.308 0.00 0.00 0.00 2.29
3967 4477 5.121811 CCCCTTCACTCATTTCAGTCTATG 58.878 45.833 0.00 0.00 0.00 2.23
3976 4486 5.010282 GTGATGTAACCCCTTCACTCATTT 58.990 41.667 0.00 0.00 36.86 2.32
3982 4565 2.871096 TGGTGATGTAACCCCTTCAC 57.129 50.000 0.00 0.00 39.70 3.18
3983 4566 4.396357 AAATGGTGATGTAACCCCTTCA 57.604 40.909 0.00 0.00 39.70 3.02
3985 4568 5.011635 GTGAAAAATGGTGATGTAACCCCTT 59.988 40.000 0.00 0.00 39.70 3.95
3991 4574 6.542821 AGAGAGGTGAAAAATGGTGATGTAA 58.457 36.000 0.00 0.00 0.00 2.41
4003 4586 6.296803 GGTAGAGGAAAAAGAGAGGTGAAAA 58.703 40.000 0.00 0.00 0.00 2.29
4004 4587 5.510861 CGGTAGAGGAAAAAGAGAGGTGAAA 60.511 44.000 0.00 0.00 0.00 2.69
4009 4592 2.418884 GGCGGTAGAGGAAAAAGAGAGG 60.419 54.545 0.00 0.00 0.00 3.69
4045 4628 6.348458 CGTCATGAGAAAAACAGAATAAGGCA 60.348 38.462 0.00 0.00 0.00 4.75
4102 5108 7.493971 ACTCAGACAATAACAATCTGCAGATAC 59.506 37.037 28.92 11.64 39.80 2.24
4172 5178 4.395959 TGGTTAAACTGTCAAGACGTCT 57.604 40.909 13.58 13.58 0.00 4.18
4173 5179 5.473796 TTTGGTTAAACTGTCAAGACGTC 57.526 39.130 7.70 7.70 0.00 4.34
4175 5181 5.632959 TGTTTTGGTTAAACTGTCAAGACG 58.367 37.500 0.00 0.00 45.18 4.18
4176 5182 7.480810 AGATGTTTTGGTTAAACTGTCAAGAC 58.519 34.615 0.00 0.00 45.18 3.01
4177 5183 7.639113 AGATGTTTTGGTTAAACTGTCAAGA 57.361 32.000 0.00 0.00 45.18 3.02
4178 5184 9.233232 GTAAGATGTTTTGGTTAAACTGTCAAG 57.767 33.333 0.00 0.00 45.18 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.