Multiple sequence alignment - TraesCS2A01G586100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G586100 chr2A 100.000 5578 0 0 1 5578 776557306 776551729 0.000000e+00 10301.0
1 TraesCS2A01G586100 chr2A 87.925 1383 122 21 1333 2694 280011865 280013223 0.000000e+00 1587.0
2 TraesCS2A01G586100 chr2A 98.246 114 2 0 3 116 776562239 776562126 3.410000e-47 200.0
3 TraesCS2A01G586100 chr2A 100.000 30 0 0 667 696 672759972 672759943 7.810000e-04 56.5
4 TraesCS2A01G586100 chr2B 93.153 3666 175 33 1461 5089 780587328 780590954 0.000000e+00 5310.0
5 TraesCS2A01G586100 chr2B 90.610 639 34 13 758 1391 780586313 780586930 0.000000e+00 824.0
6 TraesCS2A01G586100 chr2B 84.828 580 57 16 119 684 780585514 780586076 6.310000e-154 555.0
7 TraesCS2A01G586100 chr2B 94.493 345 16 2 4989 5333 780595319 780595660 3.830000e-146 529.0
8 TraesCS2A01G586100 chr2B 81.433 614 69 20 2468 3074 780656927 780657502 1.420000e-125 460.0
9 TraesCS2A01G586100 chr2B 85.771 253 34 2 3617 3869 780662485 780662735 3.310000e-67 267.0
10 TraesCS2A01G586100 chr2B 95.050 101 5 0 4883 4983 780595070 780595170 5.780000e-35 159.0
11 TraesCS2A01G586100 chr2B 92.308 104 4 4 5395 5497 780595691 780595791 1.620000e-30 145.0
12 TraesCS2A01G586100 chr2D 92.416 2479 105 28 119 2564 651274721 651277149 0.000000e+00 3459.0
13 TraesCS2A01G586100 chr2D 95.303 2044 65 9 2957 4983 651277155 651279184 0.000000e+00 3214.0
14 TraesCS2A01G586100 chr7A 88.656 1384 114 16 1332 2694 713504176 713505537 0.000000e+00 1646.0
15 TraesCS2A01G586100 chr7A 88.600 1386 114 17 1332 2695 713309403 713310766 0.000000e+00 1644.0
16 TraesCS2A01G586100 chr7A 88.584 1384 115 16 1332 2694 713589232 713590593 0.000000e+00 1640.0
17 TraesCS2A01G586100 chr7A 88.528 1386 113 23 1332 2695 713448094 713449455 0.000000e+00 1637.0
18 TraesCS2A01G586100 chr7A 88.375 1385 116 18 1332 2694 713380779 713382140 0.000000e+00 1624.0
19 TraesCS2A01G586100 chr7A 94.783 115 6 0 2 116 594552748 594552862 4.440000e-41 180.0
20 TraesCS2A01G586100 chr4A 88.816 1064 88 14 1332 2387 343158811 343159851 0.000000e+00 1277.0
21 TraesCS2A01G586100 chr4A 88.025 643 57 12 1583 2218 624208461 624209090 0.000000e+00 743.0
22 TraesCS2A01G586100 chr4A 89.336 422 32 6 2389 2797 343162145 343162566 8.280000e-143 518.0
23 TraesCS2A01G586100 chr4A 100.000 116 0 0 1 116 641526589 641526704 1.220000e-51 215.0
24 TraesCS2A01G586100 chr4A 99.138 116 1 0 1 116 641521652 641521767 5.660000e-50 209.0
25 TraesCS2A01G586100 chr3A 90.043 924 71 10 1583 2498 661031534 661032444 0.000000e+00 1177.0
26 TraesCS2A01G586100 chr3A 90.874 778 53 8 1728 2498 506454633 506453867 0.000000e+00 1027.0
27 TraesCS2A01G586100 chr3A 99.138 116 1 0 1 116 704645208 704645093 5.660000e-50 209.0
28 TraesCS2A01G586100 chr3A 97.414 116 3 0 1 116 704628694 704628579 1.230000e-46 198.0
29 TraesCS2A01G586100 chr3A 95.726 117 3 1 2 116 20898699 20898815 2.650000e-43 187.0
30 TraesCS2A01G586100 chr3A 94.872 117 4 1 2 116 20903787 20903903 1.230000e-41 182.0
31 TraesCS2A01G586100 chr3D 92.683 123 8 1 2 123 3967900 3968022 5.740000e-40 176.0
32 TraesCS2A01G586100 chr7D 85.507 69 9 1 595 663 637473044 637472977 2.790000e-08 71.3
33 TraesCS2A01G586100 chr7D 85.507 69 9 1 595 663 637483360 637483293 2.790000e-08 71.3
34 TraesCS2A01G586100 chr7D 87.755 49 6 0 616 664 429707781 429707829 2.170000e-04 58.4
35 TraesCS2A01G586100 chr1A 91.489 47 2 2 667 712 516064711 516064756 4.670000e-06 63.9
36 TraesCS2A01G586100 chr5B 97.297 37 0 1 667 702 533569872 533569836 1.680000e-05 62.1
37 TraesCS2A01G586100 chr5B 96.970 33 1 0 665 697 583287107 583287075 7.810000e-04 56.5
38 TraesCS2A01G586100 chr5B 84.483 58 6 3 670 725 493159330 493159386 3.000000e-03 54.7
39 TraesCS2A01G586100 chr7B 100.000 28 0 0 637 664 72052450 72052423 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G586100 chr2A 776551729 776557306 5577 True 10301.000000 10301 100.000000 1 5578 1 chr2A.!!$R2 5577
1 TraesCS2A01G586100 chr2A 280011865 280013223 1358 False 1587.000000 1587 87.925000 1333 2694 1 chr2A.!!$F1 1361
2 TraesCS2A01G586100 chr2B 780585514 780590954 5440 False 2229.666667 5310 89.530333 119 5089 3 chr2B.!!$F3 4970
3 TraesCS2A01G586100 chr2B 780656927 780657502 575 False 460.000000 460 81.433000 2468 3074 1 chr2B.!!$F1 606
4 TraesCS2A01G586100 chr2B 780595070 780595791 721 False 277.666667 529 93.950333 4883 5497 3 chr2B.!!$F4 614
5 TraesCS2A01G586100 chr2D 651274721 651279184 4463 False 3336.500000 3459 93.859500 119 4983 2 chr2D.!!$F1 4864
6 TraesCS2A01G586100 chr7A 713504176 713505537 1361 False 1646.000000 1646 88.656000 1332 2694 1 chr7A.!!$F5 1362
7 TraesCS2A01G586100 chr7A 713309403 713310766 1363 False 1644.000000 1644 88.600000 1332 2695 1 chr7A.!!$F2 1363
8 TraesCS2A01G586100 chr7A 713589232 713590593 1361 False 1640.000000 1640 88.584000 1332 2694 1 chr7A.!!$F6 1362
9 TraesCS2A01G586100 chr7A 713448094 713449455 1361 False 1637.000000 1637 88.528000 1332 2695 1 chr7A.!!$F4 1363
10 TraesCS2A01G586100 chr7A 713380779 713382140 1361 False 1624.000000 1624 88.375000 1332 2694 1 chr7A.!!$F3 1362
11 TraesCS2A01G586100 chr4A 343158811 343162566 3755 False 897.500000 1277 89.076000 1332 2797 2 chr4A.!!$F4 1465
12 TraesCS2A01G586100 chr4A 624208461 624209090 629 False 743.000000 743 88.025000 1583 2218 1 chr4A.!!$F1 635
13 TraesCS2A01G586100 chr3A 661031534 661032444 910 False 1177.000000 1177 90.043000 1583 2498 1 chr3A.!!$F3 915
14 TraesCS2A01G586100 chr3A 506453867 506454633 766 True 1027.000000 1027 90.874000 1728 2498 1 chr3A.!!$R1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 1110 1.157870 AAACCACGAGTTGAGCACCG 61.158 55.0 0.0 0.0 39.19 4.94 F
1581 2109 0.107703 TGCCGATGGGATGTGAACTC 60.108 55.0 0.0 0.0 34.06 3.01 F
2636 5487 1.028130 TTGCTTGCGTGTTCCATTGA 58.972 45.0 0.0 0.0 0.00 2.57 F
4271 7153 0.668401 GCCTGCAACATTCAACCAGC 60.668 55.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2488 5326 0.534412 CTACTGAGCCAGTGGACCAG 59.466 60.000 22.27 22.27 44.01 4.00 R
2869 5721 1.269778 TGGAGAAACACAGACAGAGCG 60.270 52.381 0.00 0.00 0.00 5.03 R
4556 7438 1.000385 CAGTTTGCCGGCTTCATGAAA 60.000 47.619 29.70 15.72 0.00 2.69 R
5366 8408 0.161024 GAACTGAAAAGCCGACGACG 59.839 55.000 0.00 0.00 39.43 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.940147 GAGGAGATCGATCATGTTCGG 58.060 52.381 26.47 7.56 39.56 4.30
27 28 2.294791 GAGGAGATCGATCATGTTCGGT 59.705 50.000 26.47 17.59 39.56 4.69
28 29 3.487372 AGGAGATCGATCATGTTCGGTA 58.513 45.455 26.47 7.95 39.56 4.02
29 30 3.253677 AGGAGATCGATCATGTTCGGTAC 59.746 47.826 26.47 14.20 39.56 3.34
30 31 3.004419 GGAGATCGATCATGTTCGGTACA 59.996 47.826 26.47 6.98 41.97 2.90
31 32 4.222886 GAGATCGATCATGTTCGGTACAG 58.777 47.826 26.47 0.00 40.83 2.74
32 33 2.863401 TCGATCATGTTCGGTACAGG 57.137 50.000 22.39 0.00 40.83 4.00
36 37 1.933021 TCATGTTCGGTACAGGAGGT 58.067 50.000 0.00 0.00 42.21 3.85
37 38 2.253610 TCATGTTCGGTACAGGAGGTT 58.746 47.619 0.00 0.00 42.21 3.50
38 39 2.635915 TCATGTTCGGTACAGGAGGTTT 59.364 45.455 0.00 0.00 42.21 3.27
39 40 2.536761 TGTTCGGTACAGGAGGTTTG 57.463 50.000 0.00 0.00 31.68 2.93
40 41 2.040939 TGTTCGGTACAGGAGGTTTGA 58.959 47.619 0.00 0.00 31.68 2.69
41 42 2.036733 TGTTCGGTACAGGAGGTTTGAG 59.963 50.000 0.00 0.00 31.68 3.02
42 43 1.263356 TCGGTACAGGAGGTTTGAGG 58.737 55.000 0.00 0.00 0.00 3.86
43 44 1.203087 TCGGTACAGGAGGTTTGAGGA 60.203 52.381 0.00 0.00 0.00 3.71
44 45 1.204941 CGGTACAGGAGGTTTGAGGAG 59.795 57.143 0.00 0.00 0.00 3.69
45 46 2.537143 GGTACAGGAGGTTTGAGGAGA 58.463 52.381 0.00 0.00 0.00 3.71
46 47 3.108376 GGTACAGGAGGTTTGAGGAGAT 58.892 50.000 0.00 0.00 0.00 2.75
47 48 4.287552 GGTACAGGAGGTTTGAGGAGATA 58.712 47.826 0.00 0.00 0.00 1.98
48 49 4.342665 GGTACAGGAGGTTTGAGGAGATAG 59.657 50.000 0.00 0.00 0.00 2.08
49 50 4.338795 ACAGGAGGTTTGAGGAGATAGA 57.661 45.455 0.00 0.00 0.00 1.98
50 51 4.285863 ACAGGAGGTTTGAGGAGATAGAG 58.714 47.826 0.00 0.00 0.00 2.43
51 52 3.069443 CAGGAGGTTTGAGGAGATAGAGC 59.931 52.174 0.00 0.00 0.00 4.09
52 53 3.034635 GGAGGTTTGAGGAGATAGAGCA 58.965 50.000 0.00 0.00 0.00 4.26
53 54 3.069443 GGAGGTTTGAGGAGATAGAGCAG 59.931 52.174 0.00 0.00 0.00 4.24
54 55 3.957497 GAGGTTTGAGGAGATAGAGCAGA 59.043 47.826 0.00 0.00 0.00 4.26
55 56 4.357325 AGGTTTGAGGAGATAGAGCAGAA 58.643 43.478 0.00 0.00 0.00 3.02
56 57 4.405358 AGGTTTGAGGAGATAGAGCAGAAG 59.595 45.833 0.00 0.00 0.00 2.85
57 58 4.404073 GGTTTGAGGAGATAGAGCAGAAGA 59.596 45.833 0.00 0.00 0.00 2.87
58 59 5.105146 GGTTTGAGGAGATAGAGCAGAAGAA 60.105 44.000 0.00 0.00 0.00 2.52
59 60 5.850557 TTGAGGAGATAGAGCAGAAGAAG 57.149 43.478 0.00 0.00 0.00 2.85
60 61 4.214310 TGAGGAGATAGAGCAGAAGAAGG 58.786 47.826 0.00 0.00 0.00 3.46
61 62 3.573967 GAGGAGATAGAGCAGAAGAAGGG 59.426 52.174 0.00 0.00 0.00 3.95
62 63 3.206412 AGGAGATAGAGCAGAAGAAGGGA 59.794 47.826 0.00 0.00 0.00 4.20
63 64 4.140710 AGGAGATAGAGCAGAAGAAGGGAT 60.141 45.833 0.00 0.00 0.00 3.85
64 65 5.075761 AGGAGATAGAGCAGAAGAAGGGATA 59.924 44.000 0.00 0.00 0.00 2.59
65 66 5.418840 GGAGATAGAGCAGAAGAAGGGATAG 59.581 48.000 0.00 0.00 0.00 2.08
66 67 6.212840 AGATAGAGCAGAAGAAGGGATAGA 57.787 41.667 0.00 0.00 0.00 1.98
67 68 6.619464 AGATAGAGCAGAAGAAGGGATAGAA 58.381 40.000 0.00 0.00 0.00 2.10
68 69 7.072562 AGATAGAGCAGAAGAAGGGATAGAAA 58.927 38.462 0.00 0.00 0.00 2.52
69 70 5.612725 AGAGCAGAAGAAGGGATAGAAAG 57.387 43.478 0.00 0.00 0.00 2.62
70 71 5.276440 AGAGCAGAAGAAGGGATAGAAAGA 58.724 41.667 0.00 0.00 0.00 2.52
71 72 5.363580 AGAGCAGAAGAAGGGATAGAAAGAG 59.636 44.000 0.00 0.00 0.00 2.85
72 73 5.276440 AGCAGAAGAAGGGATAGAAAGAGA 58.724 41.667 0.00 0.00 0.00 3.10
73 74 5.904750 AGCAGAAGAAGGGATAGAAAGAGAT 59.095 40.000 0.00 0.00 0.00 2.75
74 75 7.072562 AGCAGAAGAAGGGATAGAAAGAGATA 58.927 38.462 0.00 0.00 0.00 1.98
75 76 7.015195 AGCAGAAGAAGGGATAGAAAGAGATAC 59.985 40.741 0.00 0.00 0.00 2.24
76 77 7.201956 GCAGAAGAAGGGATAGAAAGAGATACA 60.202 40.741 0.00 0.00 0.00 2.29
77 78 8.700051 CAGAAGAAGGGATAGAAAGAGATACAA 58.300 37.037 0.00 0.00 0.00 2.41
78 79 8.923270 AGAAGAAGGGATAGAAAGAGATACAAG 58.077 37.037 0.00 0.00 0.00 3.16
79 80 8.616799 AAGAAGGGATAGAAAGAGATACAAGT 57.383 34.615 0.00 0.00 0.00 3.16
80 81 8.616799 AGAAGGGATAGAAAGAGATACAAGTT 57.383 34.615 0.00 0.00 0.00 2.66
81 82 9.716556 AGAAGGGATAGAAAGAGATACAAGTTA 57.283 33.333 0.00 0.00 0.00 2.24
85 86 9.886132 GGGATAGAAAGAGATACAAGTTAAACA 57.114 33.333 0.00 0.00 0.00 2.83
90 91 9.628500 AGAAAGAGATACAAGTTAAACACCTTT 57.372 29.630 0.00 0.00 0.00 3.11
91 92 9.880064 GAAAGAGATACAAGTTAAACACCTTTC 57.120 33.333 0.00 0.00 0.00 2.62
92 93 7.981102 AGAGATACAAGTTAAACACCTTTCC 57.019 36.000 0.00 0.00 0.00 3.13
93 94 7.746703 AGAGATACAAGTTAAACACCTTTCCT 58.253 34.615 0.00 0.00 0.00 3.36
94 95 8.877195 AGAGATACAAGTTAAACACCTTTCCTA 58.123 33.333 0.00 0.00 0.00 2.94
95 96 9.668497 GAGATACAAGTTAAACACCTTTCCTAT 57.332 33.333 0.00 0.00 0.00 2.57
96 97 9.668497 AGATACAAGTTAAACACCTTTCCTATC 57.332 33.333 0.00 0.00 0.00 2.08
97 98 8.803397 ATACAAGTTAAACACCTTTCCTATCC 57.197 34.615 0.00 0.00 0.00 2.59
98 99 6.008331 ACAAGTTAAACACCTTTCCTATCCC 58.992 40.000 0.00 0.00 0.00 3.85
99 100 6.183361 ACAAGTTAAACACCTTTCCTATCCCT 60.183 38.462 0.00 0.00 0.00 4.20
100 101 7.017850 ACAAGTTAAACACCTTTCCTATCCCTA 59.982 37.037 0.00 0.00 0.00 3.53
101 102 7.766736 AGTTAAACACCTTTCCTATCCCTAT 57.233 36.000 0.00 0.00 0.00 2.57
102 103 8.865244 AGTTAAACACCTTTCCTATCCCTATA 57.135 34.615 0.00 0.00 0.00 1.31
103 104 8.712103 AGTTAAACACCTTTCCTATCCCTATAC 58.288 37.037 0.00 0.00 0.00 1.47
104 105 8.488668 GTTAAACACCTTTCCTATCCCTATACA 58.511 37.037 0.00 0.00 0.00 2.29
105 106 7.519347 AAACACCTTTCCTATCCCTATACAA 57.481 36.000 0.00 0.00 0.00 2.41
106 107 6.496144 ACACCTTTCCTATCCCTATACAAC 57.504 41.667 0.00 0.00 0.00 3.32
107 108 5.968167 ACACCTTTCCTATCCCTATACAACA 59.032 40.000 0.00 0.00 0.00 3.33
108 109 6.619852 ACACCTTTCCTATCCCTATACAACAT 59.380 38.462 0.00 0.00 0.00 2.71
109 110 7.162082 CACCTTTCCTATCCCTATACAACATC 58.838 42.308 0.00 0.00 0.00 3.06
110 111 7.016661 CACCTTTCCTATCCCTATACAACATCT 59.983 40.741 0.00 0.00 0.00 2.90
111 112 7.572861 ACCTTTCCTATCCCTATACAACATCTT 59.427 37.037 0.00 0.00 0.00 2.40
112 113 8.097662 CCTTTCCTATCCCTATACAACATCTTC 58.902 40.741 0.00 0.00 0.00 2.87
113 114 8.798975 TTTCCTATCCCTATACAACATCTTCT 57.201 34.615 0.00 0.00 0.00 2.85
114 115 9.892444 TTTCCTATCCCTATACAACATCTTCTA 57.108 33.333 0.00 0.00 0.00 2.10
115 116 9.892444 TTCCTATCCCTATACAACATCTTCTAA 57.108 33.333 0.00 0.00 0.00 2.10
199 200 4.565652 GGTTGAAGAGAAAGTCCTGCCATA 60.566 45.833 0.00 0.00 0.00 2.74
299 300 4.102210 TCTGCCATATCAAAAGGAGGAGAG 59.898 45.833 0.00 0.00 0.00 3.20
338 340 4.764823 CCAGTTTGCCACTATAAAAGGACA 59.235 41.667 0.00 0.00 32.76 4.02
396 406 4.446857 AACAACGACACACGATAAACAG 57.553 40.909 0.00 0.00 45.77 3.16
409 419 9.345517 CACACGATAAACAGAATGAAAATGAAT 57.654 29.630 0.00 0.00 39.69 2.57
431 442 4.410400 CTCCCCCAACCTCACGGC 62.410 72.222 0.00 0.00 0.00 5.68
454 466 3.626222 GCCATTTGGGGTGTATAGGTTGA 60.626 47.826 0.00 0.00 37.04 3.18
460 472 3.517901 TGGGGTGTATAGGTTGAGAACTG 59.482 47.826 0.00 0.00 0.00 3.16
499 511 8.492415 AAAACTGCTAGGATACCATGATACTA 57.508 34.615 0.00 0.00 37.17 1.82
501 513 7.710676 ACTGCTAGGATACCATGATACTAAG 57.289 40.000 0.00 0.00 37.17 2.18
582 594 7.952368 ACTGTTCTTTAGTAAGGAGTAGGGTTA 59.048 37.037 10.34 0.00 32.02 2.85
594 606 2.844348 AGTAGGGTTAGTGGAATGGTGG 59.156 50.000 0.00 0.00 0.00 4.61
599 611 3.257375 GGGTTAGTGGAATGGTGGTTTTC 59.743 47.826 0.00 0.00 0.00 2.29
612 624 4.412858 TGGTGGTTTTCTCTTAAGGGTGTA 59.587 41.667 1.39 0.00 0.00 2.90
624 636 7.676893 TCTCTTAAGGGTGTAATTAGGTCTCAA 59.323 37.037 1.39 0.00 0.00 3.02
626 638 8.483758 TCTTAAGGGTGTAATTAGGTCTCAATC 58.516 37.037 1.85 0.00 0.00 2.67
627 639 6.636454 AAGGGTGTAATTAGGTCTCAATCA 57.364 37.500 0.00 0.00 0.00 2.57
628 640 6.636454 AGGGTGTAATTAGGTCTCAATCAA 57.364 37.500 0.00 0.00 0.00 2.57
629 641 7.213178 AGGGTGTAATTAGGTCTCAATCAAT 57.787 36.000 0.00 0.00 0.00 2.57
630 642 7.643123 AGGGTGTAATTAGGTCTCAATCAATT 58.357 34.615 0.00 0.00 0.00 2.32
631 643 7.557719 AGGGTGTAATTAGGTCTCAATCAATTG 59.442 37.037 0.00 0.00 39.10 2.32
632 644 7.556275 GGGTGTAATTAGGTCTCAATCAATTGA 59.444 37.037 11.26 11.26 43.94 2.57
646 658 8.099364 TCAATCAATTGAGAGTTAACCAAGTC 57.901 34.615 14.54 0.00 41.51 3.01
648 660 8.571336 CAATCAATTGAGAGTTAACCAAGTCTT 58.429 33.333 14.54 0.00 43.19 3.01
859 1045 1.538075 GCTACTTTTGCCTTTGCCGTA 59.462 47.619 0.00 0.00 36.33 4.02
875 1061 2.919870 CCGTAAAGGCGTAAACCAAAC 58.080 47.619 0.00 0.00 0.00 2.93
876 1062 2.350676 CCGTAAAGGCGTAAACCAAACC 60.351 50.000 0.00 0.00 0.00 3.27
877 1063 2.290093 CGTAAAGGCGTAAACCAAACCA 59.710 45.455 0.00 0.00 0.00 3.67
878 1064 3.243002 CGTAAAGGCGTAAACCAAACCAA 60.243 43.478 0.00 0.00 0.00 3.67
879 1065 3.889520 AAAGGCGTAAACCAAACCAAA 57.110 38.095 0.00 0.00 0.00 3.28
893 1079 6.345298 ACCAAACCAAACCAAATTGACTTAG 58.655 36.000 0.00 0.00 31.84 2.18
895 1081 6.407525 CCAAACCAAACCAAATTGACTTAGGA 60.408 38.462 0.00 0.00 31.84 2.94
900 1086 7.551262 ACCAAACCAAATTGACTTAGGAAAAAC 59.449 33.333 0.00 0.00 31.84 2.43
902 1088 6.800072 ACCAAATTGACTTAGGAAAAACCA 57.200 33.333 0.00 0.00 42.04 3.67
903 1089 6.578944 ACCAAATTGACTTAGGAAAAACCAC 58.421 36.000 0.00 0.00 42.04 4.16
904 1090 5.689961 CCAAATTGACTTAGGAAAAACCACG 59.310 40.000 0.00 0.00 42.04 4.94
905 1091 6.460399 CCAAATTGACTTAGGAAAAACCACGA 60.460 38.462 0.00 0.00 42.04 4.35
906 1092 5.941948 ATTGACTTAGGAAAAACCACGAG 57.058 39.130 0.00 0.00 42.04 4.18
908 1094 4.773013 TGACTTAGGAAAAACCACGAGTT 58.227 39.130 0.00 0.00 41.81 3.01
909 1095 4.573201 TGACTTAGGAAAAACCACGAGTTG 59.427 41.667 0.00 0.00 39.19 3.16
916 1110 1.157870 AAACCACGAGTTGAGCACCG 61.158 55.000 0.00 0.00 39.19 4.94
1044 1238 4.873129 CAGTCGGCGGTCATCGGG 62.873 72.222 7.21 0.00 39.69 5.14
1581 2109 0.107703 TGCCGATGGGATGTGAACTC 60.108 55.000 0.00 0.00 34.06 3.01
1599 2127 4.264460 ACTCTGGTGTGATTTCTGAGTC 57.736 45.455 0.00 0.00 35.71 3.36
1660 2188 4.712337 TCCCCAAGTTCAACTTTTGCTAAA 59.288 37.500 0.00 0.00 36.03 1.85
1675 2204 7.550906 ACTTTTGCTAAATCCTAGCTAGAGTTG 59.449 37.037 22.70 5.36 37.41 3.16
1731 2260 6.727231 TCTCTAGGTTTGGTGTACAGGATTTA 59.273 38.462 0.00 0.00 0.00 1.40
1830 2360 9.060347 CATGAGCATCCAAGTACTTACATTTAT 57.940 33.333 8.04 0.00 0.00 1.40
2028 2569 1.509644 TTTGCTCTGCCTGTGCTTCG 61.510 55.000 0.00 0.00 38.71 3.79
2090 2633 5.167121 CCGATTGATTGGTTGTTTGCATTA 58.833 37.500 0.00 0.00 0.00 1.90
2101 2644 5.982516 GGTTGTTTGCATTATCTGTTTGTGA 59.017 36.000 0.00 0.00 0.00 3.58
2115 2658 5.055265 TGTTTGTGATACTTTCCCCTGAA 57.945 39.130 0.00 0.00 0.00 3.02
2382 2927 7.046033 TGAGCACTTACTAGGTAATTTTAGCC 58.954 38.462 0.00 0.00 31.76 3.93
2482 5320 8.235359 TCCTAGCTATAGTTCTTGTTAAGACC 57.765 38.462 0.84 0.00 37.23 3.85
2488 5326 3.915536 AGTTCTTGTTAAGACCGAGAGC 58.084 45.455 0.00 0.00 37.23 4.09
2500 5338 2.267324 GAGAGCTGGTCCACTGGC 59.733 66.667 2.76 0.00 0.00 4.85
2503 5341 2.527624 AGCTGGTCCACTGGCTCA 60.528 61.111 0.00 0.00 0.00 4.26
2551 5400 3.195661 CTCGTGCTAGTTTATGGGTTCC 58.804 50.000 0.00 0.00 0.00 3.62
2636 5487 1.028130 TTGCTTGCGTGTTCCATTGA 58.972 45.000 0.00 0.00 0.00 2.57
2665 5516 5.865085 AGTGCTACTTTAACCTGAACATCA 58.135 37.500 0.00 0.00 0.00 3.07
2740 5591 2.609427 TGTGATCAGGCTGCATAGTC 57.391 50.000 10.34 3.44 0.00 2.59
2760 5611 4.040095 AGTCGTGTAGGGCTTAGAGTTTTT 59.960 41.667 0.00 0.00 0.00 1.94
2815 5667 9.494271 GATTTTCATATATGAGCACTGGAACTA 57.506 33.333 14.86 0.00 38.19 2.24
2830 5682 8.178313 GCACTGGAACTAAGACATCTATTTTTC 58.822 37.037 0.00 0.00 0.00 2.29
2831 5683 9.219603 CACTGGAACTAAGACATCTATTTTTCA 57.780 33.333 0.00 0.00 0.00 2.69
2852 5704 8.862325 TTTCATAGTGAAACATGTATCAACCT 57.138 30.769 0.00 0.00 41.02 3.50
2862 5714 9.444600 GAAACATGTATCAACCTTAGACCTTTA 57.555 33.333 0.00 0.00 0.00 1.85
2863 5715 9.802039 AAACATGTATCAACCTTAGACCTTTAA 57.198 29.630 0.00 0.00 0.00 1.52
2869 5721 7.689446 ATCAACCTTAGACCTTTAAGCTTTC 57.311 36.000 3.20 0.00 30.84 2.62
2888 5740 1.000163 TCGCTCTGTCTGTGTTTCTCC 60.000 52.381 0.00 0.00 0.00 3.71
2910 5762 2.595750 TTGGTAATTGTCCCTGGGTG 57.404 50.000 13.56 0.00 0.00 4.61
3148 6002 7.841282 ATATTAGCAGTAGACCTGTATGTGT 57.159 36.000 0.00 0.00 43.55 3.72
3399 6254 5.122519 TCACAGTGTTTGCTCTGTTTGATA 58.877 37.500 0.00 0.00 44.19 2.15
3400 6255 5.764686 TCACAGTGTTTGCTCTGTTTGATAT 59.235 36.000 0.00 0.00 44.19 1.63
3401 6256 6.934083 TCACAGTGTTTGCTCTGTTTGATATA 59.066 34.615 0.00 0.00 44.19 0.86
3402 6257 7.443879 TCACAGTGTTTGCTCTGTTTGATATAA 59.556 33.333 0.00 0.00 44.19 0.98
3403 6258 8.239314 CACAGTGTTTGCTCTGTTTGATATAAT 58.761 33.333 0.00 0.00 44.19 1.28
3404 6259 8.454106 ACAGTGTTTGCTCTGTTTGATATAATC 58.546 33.333 0.00 0.00 44.19 1.75
3405 6260 8.671921 CAGTGTTTGCTCTGTTTGATATAATCT 58.328 33.333 0.00 0.00 33.07 2.40
3406 6261 8.671921 AGTGTTTGCTCTGTTTGATATAATCTG 58.328 33.333 0.00 0.00 0.00 2.90
3407 6262 8.454106 GTGTTTGCTCTGTTTGATATAATCTGT 58.546 33.333 0.00 0.00 0.00 3.41
3408 6263 9.013229 TGTTTGCTCTGTTTGATATAATCTGTT 57.987 29.630 0.00 0.00 0.00 3.16
3409 6264 9.846248 GTTTGCTCTGTTTGATATAATCTGTTT 57.154 29.630 0.00 0.00 0.00 2.83
3410 6265 9.844790 TTTGCTCTGTTTGATATAATCTGTTTG 57.155 29.630 0.00 0.00 0.00 2.93
3411 6266 8.791327 TGCTCTGTTTGATATAATCTGTTTGA 57.209 30.769 0.00 0.00 0.00 2.69
3412 6267 8.668353 TGCTCTGTTTGATATAATCTGTTTGAC 58.332 33.333 0.00 0.00 0.00 3.18
3609 6478 2.949177 TGGTGTGTAGCCAAGTTCAT 57.051 45.000 0.00 0.00 32.29 2.57
3715 6594 1.814394 GTTTGTCTCCATCATGCTGCA 59.186 47.619 4.13 4.13 0.00 4.41
3765 6646 7.103641 TCCATTTAGTACTTTGCCTGAACTAG 58.896 38.462 0.00 0.00 0.00 2.57
3789 6670 8.553459 AGTGTTTCTAGGATTACAATGAACTG 57.447 34.615 0.00 0.00 0.00 3.16
3840 6721 2.242043 CATGTTTCTGCAAGGGAAGGT 58.758 47.619 0.00 0.00 0.00 3.50
4099 6981 5.927954 TTTGTCGTGTACCCTTTATTCAC 57.072 39.130 0.00 0.00 0.00 3.18
4115 6997 9.601971 CCTTTATTCACTGCATTTTGAAATTTG 57.398 29.630 8.99 2.82 35.42 2.32
4221 7103 4.533222 CTGTACCAAACCGACAAAATGTC 58.467 43.478 0.39 0.39 43.65 3.06
4270 7152 0.963962 AGCCTGCAACATTCAACCAG 59.036 50.000 0.00 0.00 0.00 4.00
4271 7153 0.668401 GCCTGCAACATTCAACCAGC 60.668 55.000 0.00 0.00 0.00 4.85
4272 7154 0.963962 CCTGCAACATTCAACCAGCT 59.036 50.000 0.00 0.00 0.00 4.24
4282 7164 2.386661 TCAACCAGCTAGCTAACTGC 57.613 50.000 18.86 6.97 43.29 4.40
4318 7200 6.966066 GGTTCAGTTCATCTACTACGTTAGAC 59.034 42.308 0.00 0.00 0.00 2.59
4326 7208 8.523915 TCATCTACTACGTTAGACCCAATTTA 57.476 34.615 0.00 0.00 0.00 1.40
4382 7264 1.594331 ACCTTTTGCGACCTTCAGAC 58.406 50.000 0.00 0.00 0.00 3.51
4389 7271 1.140816 GCGACCTTCAGACACTGAAC 58.859 55.000 9.67 1.52 44.27 3.18
4427 7309 1.671379 GGACAACGAAGGGCAGACC 60.671 63.158 0.00 0.00 40.67 3.85
4517 7399 1.043116 TCCAGATCAAGGACGGCGAT 61.043 55.000 16.62 0.00 0.00 4.58
4601 7483 2.032894 GCACAATGAACCCGATGATACG 60.033 50.000 0.00 0.00 0.00 3.06
4602 7484 3.194861 CACAATGAACCCGATGATACGT 58.805 45.455 0.00 0.00 0.00 3.57
4603 7485 3.621268 CACAATGAACCCGATGATACGTT 59.379 43.478 0.00 0.00 0.00 3.99
4605 7487 3.812156 ATGAACCCGATGATACGTTGA 57.188 42.857 0.00 0.00 0.00 3.18
4606 7488 2.883574 TGAACCCGATGATACGTTGAC 58.116 47.619 0.00 0.00 0.00 3.18
4608 7490 0.526954 ACCCGATGATACGTTGACGC 60.527 55.000 3.05 0.00 44.43 5.19
4610 7492 0.248907 CCGATGATACGTTGACGCCT 60.249 55.000 3.05 0.00 44.43 5.52
4745 7633 5.450688 GCAGGGTAGACATCTTGTAGTAGTG 60.451 48.000 0.00 0.00 0.00 2.74
4896 7784 4.341520 TCTCTAGCGGATCCCTTAAAAGTC 59.658 45.833 6.06 0.00 0.00 3.01
5071 8103 2.184322 CTAGCGGTGGATGCACGT 59.816 61.111 11.52 1.13 33.85 4.49
5126 8158 1.222387 GCCCGGCCATGTACTAACA 59.778 57.895 2.24 0.00 40.69 2.41
5132 8164 1.365699 GCCATGTACTAACACCGTGG 58.634 55.000 3.03 0.00 38.78 4.94
5133 8165 1.365699 CCATGTACTAACACCGTGGC 58.634 55.000 3.03 0.00 38.78 5.01
5178 8210 4.719369 GGAGAACGTGTCGCCGCT 62.719 66.667 0.00 0.00 36.38 5.52
5292 8324 0.106719 GGGATTTGGCCAGAATCGGA 60.107 55.000 23.00 1.50 34.97 4.55
5316 8348 1.933115 CTTGGTGGAATTTCGCCGGG 61.933 60.000 11.78 3.17 40.02 5.73
5317 8349 3.138128 GGTGGAATTTCGCCGGGG 61.138 66.667 13.31 13.31 0.00 5.73
5318 8350 3.822192 GTGGAATTTCGCCGGGGC 61.822 66.667 14.85 0.00 37.85 5.80
5319 8351 4.041762 TGGAATTTCGCCGGGGCT 62.042 61.111 14.85 0.00 39.32 5.19
5321 8353 3.209812 GAATTTCGCCGGGGCTCC 61.210 66.667 14.85 0.00 39.32 4.70
5352 8394 2.302733 GGTGATGGTTGGGCTGAAATTT 59.697 45.455 0.00 0.00 0.00 1.82
5353 8395 3.588955 GTGATGGTTGGGCTGAAATTTC 58.411 45.455 11.41 11.41 0.00 2.17
5354 8396 2.566724 TGATGGTTGGGCTGAAATTTCC 59.433 45.455 15.48 1.23 0.00 3.13
5357 8399 1.550524 GGTTGGGCTGAAATTTCCCTC 59.449 52.381 15.48 7.23 40.69 4.30
5358 8400 1.550524 GTTGGGCTGAAATTTCCCTCC 59.449 52.381 15.48 13.16 40.69 4.30
5359 8401 0.323360 TGGGCTGAAATTTCCCTCCG 60.323 55.000 15.48 0.84 40.69 4.63
5360 8402 1.037579 GGGCTGAAATTTCCCTCCGG 61.038 60.000 15.48 0.00 37.08 5.14
5361 8403 1.667154 GGCTGAAATTTCCCTCCGGC 61.667 60.000 15.48 7.34 0.00 6.13
5362 8404 1.667154 GCTGAAATTTCCCTCCGGCC 61.667 60.000 15.48 0.00 0.00 6.13
5363 8405 0.323360 CTGAAATTTCCCTCCGGCCA 60.323 55.000 15.48 0.00 0.00 5.36
5364 8406 0.113385 TGAAATTTCCCTCCGGCCAA 59.887 50.000 15.48 0.00 0.00 4.52
5365 8407 0.530744 GAAATTTCCCTCCGGCCAAC 59.469 55.000 6.95 0.00 0.00 3.77
5366 8408 0.902984 AAATTTCCCTCCGGCCAACC 60.903 55.000 2.24 0.00 0.00 3.77
5383 8425 3.932289 CGTCGTCGGCTTTTCAGT 58.068 55.556 0.00 0.00 0.00 3.41
5384 8426 2.222592 CGTCGTCGGCTTTTCAGTT 58.777 52.632 0.00 0.00 0.00 3.16
5385 8427 0.161024 CGTCGTCGGCTTTTCAGTTC 59.839 55.000 0.00 0.00 0.00 3.01
5386 8428 1.214367 GTCGTCGGCTTTTCAGTTCA 58.786 50.000 0.00 0.00 0.00 3.18
5387 8429 1.070776 GTCGTCGGCTTTTCAGTTCAC 60.071 52.381 0.00 0.00 0.00 3.18
5388 8430 0.234884 CGTCGGCTTTTCAGTTCACC 59.765 55.000 0.00 0.00 0.00 4.02
5389 8431 0.591659 GTCGGCTTTTCAGTTCACCC 59.408 55.000 0.00 0.00 0.00 4.61
5390 8432 0.536460 TCGGCTTTTCAGTTCACCCC 60.536 55.000 0.00 0.00 0.00 4.95
5391 8433 0.821711 CGGCTTTTCAGTTCACCCCA 60.822 55.000 0.00 0.00 0.00 4.96
5392 8434 1.408969 GGCTTTTCAGTTCACCCCAA 58.591 50.000 0.00 0.00 0.00 4.12
5393 8435 1.760029 GGCTTTTCAGTTCACCCCAAA 59.240 47.619 0.00 0.00 0.00 3.28
5394 8436 2.169561 GGCTTTTCAGTTCACCCCAAAA 59.830 45.455 0.00 0.00 0.00 2.44
5395 8437 3.369997 GGCTTTTCAGTTCACCCCAAAAA 60.370 43.478 0.00 0.00 0.00 1.94
5396 8438 4.450976 GCTTTTCAGTTCACCCCAAAAAT 58.549 39.130 0.00 0.00 0.00 1.82
5397 8439 4.511454 GCTTTTCAGTTCACCCCAAAAATC 59.489 41.667 0.00 0.00 0.00 2.17
5398 8440 5.684813 GCTTTTCAGTTCACCCCAAAAATCT 60.685 40.000 0.00 0.00 0.00 2.40
5399 8441 6.462347 GCTTTTCAGTTCACCCCAAAAATCTA 60.462 38.462 0.00 0.00 0.00 1.98
5457 8500 5.828299 TTACGGGGAGCTCAATAATTTTG 57.172 39.130 17.19 0.00 0.00 2.44
5458 8501 3.697166 ACGGGGAGCTCAATAATTTTGT 58.303 40.909 17.19 0.00 0.00 2.83
5459 8502 4.086457 ACGGGGAGCTCAATAATTTTGTT 58.914 39.130 17.19 0.00 0.00 2.83
5460 8503 4.526650 ACGGGGAGCTCAATAATTTTGTTT 59.473 37.500 17.19 0.00 0.00 2.83
5518 8561 9.528018 TTTTTACAGTTTCAAGCCTTTTATGAG 57.472 29.630 0.00 0.00 0.00 2.90
5519 8562 8.458573 TTTACAGTTTCAAGCCTTTTATGAGA 57.541 30.769 0.00 0.00 0.00 3.27
5520 8563 8.635765 TTACAGTTTCAAGCCTTTTATGAGAT 57.364 30.769 0.00 0.00 0.00 2.75
5521 8564 7.530426 ACAGTTTCAAGCCTTTTATGAGATT 57.470 32.000 0.00 0.00 0.00 2.40
5522 8565 7.955918 ACAGTTTCAAGCCTTTTATGAGATTT 58.044 30.769 0.00 0.00 0.00 2.17
5523 8566 7.869429 ACAGTTTCAAGCCTTTTATGAGATTTG 59.131 33.333 0.00 0.00 0.00 2.32
5524 8567 6.870439 AGTTTCAAGCCTTTTATGAGATTTGC 59.130 34.615 0.00 0.00 0.00 3.68
5525 8568 6.594788 TTCAAGCCTTTTATGAGATTTGCT 57.405 33.333 0.00 0.00 0.00 3.91
5526 8569 7.701539 TTCAAGCCTTTTATGAGATTTGCTA 57.298 32.000 0.00 0.00 0.00 3.49
5527 8570 7.325660 TCAAGCCTTTTATGAGATTTGCTAG 57.674 36.000 0.00 0.00 0.00 3.42
5528 8571 7.112122 TCAAGCCTTTTATGAGATTTGCTAGA 58.888 34.615 0.00 0.00 0.00 2.43
5529 8572 7.281774 TCAAGCCTTTTATGAGATTTGCTAGAG 59.718 37.037 0.00 0.00 0.00 2.43
5530 8573 6.893583 AGCCTTTTATGAGATTTGCTAGAGA 58.106 36.000 0.00 0.00 0.00 3.10
5531 8574 7.516452 AGCCTTTTATGAGATTTGCTAGAGAT 58.484 34.615 0.00 0.00 0.00 2.75
5532 8575 7.444792 AGCCTTTTATGAGATTTGCTAGAGATG 59.555 37.037 0.00 0.00 0.00 2.90
5533 8576 7.583230 CCTTTTATGAGATTTGCTAGAGATGC 58.417 38.462 0.00 0.00 0.00 3.91
5534 8577 7.444792 CCTTTTATGAGATTTGCTAGAGATGCT 59.555 37.037 0.00 0.00 0.00 3.79
5535 8578 8.743085 TTTTATGAGATTTGCTAGAGATGCTT 57.257 30.769 0.00 0.00 0.00 3.91
5536 8579 7.959689 TTATGAGATTTGCTAGAGATGCTTC 57.040 36.000 0.00 0.00 0.00 3.86
5537 8580 5.611128 TGAGATTTGCTAGAGATGCTTCT 57.389 39.130 0.96 0.96 33.88 2.85
5549 8592 5.078411 GAGATGCTTCTCCAACTAGAACA 57.922 43.478 16.83 0.00 42.26 3.18
5550 8593 5.669477 GAGATGCTTCTCCAACTAGAACAT 58.331 41.667 16.83 0.00 42.26 2.71
5551 8594 5.669477 AGATGCTTCTCCAACTAGAACATC 58.331 41.667 0.00 14.49 40.14 3.06
5552 8595 5.424895 AGATGCTTCTCCAACTAGAACATCT 59.575 40.000 16.88 16.88 42.14 2.90
5553 8596 4.825422 TGCTTCTCCAACTAGAACATCTG 58.175 43.478 0.00 0.00 32.18 2.90
5554 8597 4.284490 TGCTTCTCCAACTAGAACATCTGT 59.716 41.667 0.00 0.00 32.18 3.41
5555 8598 5.480422 TGCTTCTCCAACTAGAACATCTGTA 59.520 40.000 0.00 0.00 32.18 2.74
5556 8599 6.039616 GCTTCTCCAACTAGAACATCTGTAG 58.960 44.000 0.00 0.00 32.18 2.74
5557 8600 6.127591 GCTTCTCCAACTAGAACATCTGTAGA 60.128 42.308 0.00 0.00 32.18 2.59
5558 8601 7.417342 GCTTCTCCAACTAGAACATCTGTAGAT 60.417 40.741 0.00 0.00 32.18 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.294791 ACCGAACATGATCGATCTCCTC 59.705 50.000 24.95 14.77 45.48 3.71
7 8 2.311463 ACCGAACATGATCGATCTCCT 58.689 47.619 24.95 8.24 45.48 3.69
8 9 2.802787 ACCGAACATGATCGATCTCC 57.197 50.000 24.95 9.33 45.48 3.71
9 10 4.222886 CTGTACCGAACATGATCGATCTC 58.777 47.826 24.95 13.60 45.48 2.75
10 11 3.004839 CCTGTACCGAACATGATCGATCT 59.995 47.826 24.95 5.76 45.48 2.75
11 12 3.004419 TCCTGTACCGAACATGATCGATC 59.996 47.826 24.95 18.72 45.48 3.69
12 13 2.956333 TCCTGTACCGAACATGATCGAT 59.044 45.455 24.95 12.35 45.48 3.59
13 14 2.357952 CTCCTGTACCGAACATGATCGA 59.642 50.000 24.95 4.85 45.48 3.59
14 15 2.543861 CCTCCTGTACCGAACATGATCG 60.544 54.545 17.57 17.57 42.37 3.69
15 16 2.431057 ACCTCCTGTACCGAACATGATC 59.569 50.000 0.00 0.00 37.50 2.92
16 17 2.467880 ACCTCCTGTACCGAACATGAT 58.532 47.619 0.00 0.00 37.50 2.45
17 18 1.933021 ACCTCCTGTACCGAACATGA 58.067 50.000 0.00 0.00 37.50 3.07
18 19 2.742053 CAAACCTCCTGTACCGAACATG 59.258 50.000 0.00 0.00 37.50 3.21
19 20 2.635915 TCAAACCTCCTGTACCGAACAT 59.364 45.455 0.00 0.00 37.50 2.71
20 21 2.036733 CTCAAACCTCCTGTACCGAACA 59.963 50.000 0.00 0.00 36.42 3.18
21 22 2.612221 CCTCAAACCTCCTGTACCGAAC 60.612 54.545 0.00 0.00 0.00 3.95
22 23 1.621814 CCTCAAACCTCCTGTACCGAA 59.378 52.381 0.00 0.00 0.00 4.30
23 24 1.203087 TCCTCAAACCTCCTGTACCGA 60.203 52.381 0.00 0.00 0.00 4.69
24 25 1.204941 CTCCTCAAACCTCCTGTACCG 59.795 57.143 0.00 0.00 0.00 4.02
25 26 2.537143 TCTCCTCAAACCTCCTGTACC 58.463 52.381 0.00 0.00 0.00 3.34
26 27 5.202004 TCTATCTCCTCAAACCTCCTGTAC 58.798 45.833 0.00 0.00 0.00 2.90
27 28 5.450453 CTCTATCTCCTCAAACCTCCTGTA 58.550 45.833 0.00 0.00 0.00 2.74
28 29 4.285863 CTCTATCTCCTCAAACCTCCTGT 58.714 47.826 0.00 0.00 0.00 4.00
29 30 3.069443 GCTCTATCTCCTCAAACCTCCTG 59.931 52.174 0.00 0.00 0.00 3.86
30 31 3.304829 GCTCTATCTCCTCAAACCTCCT 58.695 50.000 0.00 0.00 0.00 3.69
31 32 3.034635 TGCTCTATCTCCTCAAACCTCC 58.965 50.000 0.00 0.00 0.00 4.30
32 33 3.957497 TCTGCTCTATCTCCTCAAACCTC 59.043 47.826 0.00 0.00 0.00 3.85
33 34 3.987745 TCTGCTCTATCTCCTCAAACCT 58.012 45.455 0.00 0.00 0.00 3.50
34 35 4.404073 TCTTCTGCTCTATCTCCTCAAACC 59.596 45.833 0.00 0.00 0.00 3.27
35 36 5.590530 TCTTCTGCTCTATCTCCTCAAAC 57.409 43.478 0.00 0.00 0.00 2.93
36 37 5.128499 CCTTCTTCTGCTCTATCTCCTCAAA 59.872 44.000 0.00 0.00 0.00 2.69
37 38 4.648762 CCTTCTTCTGCTCTATCTCCTCAA 59.351 45.833 0.00 0.00 0.00 3.02
38 39 4.214310 CCTTCTTCTGCTCTATCTCCTCA 58.786 47.826 0.00 0.00 0.00 3.86
39 40 3.573967 CCCTTCTTCTGCTCTATCTCCTC 59.426 52.174 0.00 0.00 0.00 3.71
40 41 3.206412 TCCCTTCTTCTGCTCTATCTCCT 59.794 47.826 0.00 0.00 0.00 3.69
41 42 3.571590 TCCCTTCTTCTGCTCTATCTCC 58.428 50.000 0.00 0.00 0.00 3.71
42 43 6.245408 TCTATCCCTTCTTCTGCTCTATCTC 58.755 44.000 0.00 0.00 0.00 2.75
43 44 6.212840 TCTATCCCTTCTTCTGCTCTATCT 57.787 41.667 0.00 0.00 0.00 1.98
44 45 6.909550 TTCTATCCCTTCTTCTGCTCTATC 57.090 41.667 0.00 0.00 0.00 2.08
45 46 7.072562 TCTTTCTATCCCTTCTTCTGCTCTAT 58.927 38.462 0.00 0.00 0.00 1.98
46 47 6.436027 TCTTTCTATCCCTTCTTCTGCTCTA 58.564 40.000 0.00 0.00 0.00 2.43
47 48 5.276440 TCTTTCTATCCCTTCTTCTGCTCT 58.724 41.667 0.00 0.00 0.00 4.09
48 49 5.362430 TCTCTTTCTATCCCTTCTTCTGCTC 59.638 44.000 0.00 0.00 0.00 4.26
49 50 5.276440 TCTCTTTCTATCCCTTCTTCTGCT 58.724 41.667 0.00 0.00 0.00 4.24
50 51 5.606348 TCTCTTTCTATCCCTTCTTCTGC 57.394 43.478 0.00 0.00 0.00 4.26
51 52 8.243961 TGTATCTCTTTCTATCCCTTCTTCTG 57.756 38.462 0.00 0.00 0.00 3.02
52 53 8.846423 TTGTATCTCTTTCTATCCCTTCTTCT 57.154 34.615 0.00 0.00 0.00 2.85
53 54 8.700973 ACTTGTATCTCTTTCTATCCCTTCTTC 58.299 37.037 0.00 0.00 0.00 2.87
54 55 8.616799 ACTTGTATCTCTTTCTATCCCTTCTT 57.383 34.615 0.00 0.00 0.00 2.52
55 56 8.616799 AACTTGTATCTCTTTCTATCCCTTCT 57.383 34.615 0.00 0.00 0.00 2.85
59 60 9.886132 TGTTTAACTTGTATCTCTTTCTATCCC 57.114 33.333 0.00 0.00 0.00 3.85
64 65 9.628500 AAAGGTGTTTAACTTGTATCTCTTTCT 57.372 29.630 0.00 0.00 0.00 2.52
65 66 9.880064 GAAAGGTGTTTAACTTGTATCTCTTTC 57.120 33.333 0.00 0.00 32.03 2.62
66 67 8.847196 GGAAAGGTGTTTAACTTGTATCTCTTT 58.153 33.333 0.00 0.00 0.00 2.52
67 68 8.218488 AGGAAAGGTGTTTAACTTGTATCTCTT 58.782 33.333 0.00 0.00 0.00 2.85
68 69 7.746703 AGGAAAGGTGTTTAACTTGTATCTCT 58.253 34.615 0.00 0.00 0.00 3.10
69 70 7.981102 AGGAAAGGTGTTTAACTTGTATCTC 57.019 36.000 0.00 0.00 0.00 2.75
70 71 9.668497 GATAGGAAAGGTGTTTAACTTGTATCT 57.332 33.333 0.00 0.00 0.00 1.98
71 72 8.890718 GGATAGGAAAGGTGTTTAACTTGTATC 58.109 37.037 0.00 0.00 0.00 2.24
72 73 7.832685 GGGATAGGAAAGGTGTTTAACTTGTAT 59.167 37.037 0.00 0.00 0.00 2.29
73 74 7.017850 AGGGATAGGAAAGGTGTTTAACTTGTA 59.982 37.037 0.00 0.00 0.00 2.41
74 75 6.008331 GGGATAGGAAAGGTGTTTAACTTGT 58.992 40.000 0.00 0.00 0.00 3.16
75 76 6.246163 AGGGATAGGAAAGGTGTTTAACTTG 58.754 40.000 0.00 0.00 0.00 3.16
76 77 6.464530 AGGGATAGGAAAGGTGTTTAACTT 57.535 37.500 0.00 0.00 0.00 2.66
77 78 7.766736 ATAGGGATAGGAAAGGTGTTTAACT 57.233 36.000 0.00 0.00 0.00 2.24
78 79 8.488668 TGTATAGGGATAGGAAAGGTGTTTAAC 58.511 37.037 0.00 0.00 0.00 2.01
79 80 8.626917 TGTATAGGGATAGGAAAGGTGTTTAA 57.373 34.615 0.00 0.00 0.00 1.52
80 81 8.488668 GTTGTATAGGGATAGGAAAGGTGTTTA 58.511 37.037 0.00 0.00 0.00 2.01
81 82 7.037153 TGTTGTATAGGGATAGGAAAGGTGTTT 60.037 37.037 0.00 0.00 0.00 2.83
82 83 6.445786 TGTTGTATAGGGATAGGAAAGGTGTT 59.554 38.462 0.00 0.00 0.00 3.32
83 84 5.968167 TGTTGTATAGGGATAGGAAAGGTGT 59.032 40.000 0.00 0.00 0.00 4.16
84 85 6.494666 TGTTGTATAGGGATAGGAAAGGTG 57.505 41.667 0.00 0.00 0.00 4.00
85 86 7.082972 AGATGTTGTATAGGGATAGGAAAGGT 58.917 38.462 0.00 0.00 0.00 3.50
86 87 7.560796 AGATGTTGTATAGGGATAGGAAAGG 57.439 40.000 0.00 0.00 0.00 3.11
87 88 8.875168 AGAAGATGTTGTATAGGGATAGGAAAG 58.125 37.037 0.00 0.00 0.00 2.62
88 89 8.798975 AGAAGATGTTGTATAGGGATAGGAAA 57.201 34.615 0.00 0.00 0.00 3.13
89 90 9.892444 TTAGAAGATGTTGTATAGGGATAGGAA 57.108 33.333 0.00 0.00 0.00 3.36
102 103 9.520515 AACCTTGACATTATTAGAAGATGTTGT 57.479 29.630 0.00 0.00 34.38 3.32
103 104 9.778993 CAACCTTGACATTATTAGAAGATGTTG 57.221 33.333 0.00 0.00 34.38 3.33
104 105 9.739276 TCAACCTTGACATTATTAGAAGATGTT 57.261 29.630 0.00 0.00 34.38 2.71
299 300 1.476488 ACTGGGTTGCGGAATAATTGC 59.524 47.619 0.00 0.00 0.00 3.56
396 406 6.127083 TGGGGGAGCTAAATTCATTTTCATTC 60.127 38.462 0.00 0.00 0.00 2.67
409 419 0.696501 GTGAGGTTGGGGGAGCTAAA 59.303 55.000 0.00 0.00 0.00 1.85
431 442 1.133915 ACCTATACACCCCAAATGGCG 60.134 52.381 0.00 0.00 0.00 5.69
443 455 5.339008 AATCGCAGTTCTCAACCTATACA 57.661 39.130 0.00 0.00 0.00 2.29
499 511 8.446599 TTCTCGAAAGAAATTTAACCACTCTT 57.553 30.769 0.00 0.00 38.58 2.85
501 513 8.084590 TCTTCTCGAAAGAAATTTAACCACTC 57.915 34.615 7.35 0.00 40.95 3.51
562 574 6.894103 TCCACTAACCCTACTCCTTACTAAAG 59.106 42.308 0.00 0.00 0.00 1.85
570 582 3.246387 ACCATTCCACTAACCCTACTCCT 60.246 47.826 0.00 0.00 0.00 3.69
582 594 3.884037 AGAGAAAACCACCATTCCACT 57.116 42.857 0.00 0.00 0.00 4.00
594 606 8.859236 ACCTAATTACACCCTTAAGAGAAAAC 57.141 34.615 3.36 0.00 0.00 2.43
599 611 7.419711 TGAGACCTAATTACACCCTTAAGAG 57.580 40.000 3.36 0.00 0.00 2.85
624 636 9.442047 CTAAGACTTGGTTAACTCTCAATTGAT 57.558 33.333 8.96 0.00 0.00 2.57
626 638 8.608844 ACTAAGACTTGGTTAACTCTCAATTG 57.391 34.615 5.42 0.00 0.00 2.32
627 639 8.429641 TGACTAAGACTTGGTTAACTCTCAATT 58.570 33.333 5.60 0.00 0.00 2.32
628 640 7.963532 TGACTAAGACTTGGTTAACTCTCAAT 58.036 34.615 5.60 0.00 0.00 2.57
629 641 7.356089 TGACTAAGACTTGGTTAACTCTCAA 57.644 36.000 5.60 0.79 0.00 3.02
630 642 6.971726 TGACTAAGACTTGGTTAACTCTCA 57.028 37.500 5.60 0.00 0.00 3.27
631 643 7.382759 CACTTGACTAAGACTTGGTTAACTCTC 59.617 40.741 5.60 0.00 37.36 3.20
632 644 7.069578 TCACTTGACTAAGACTTGGTTAACTCT 59.930 37.037 5.60 0.00 37.36 3.24
633 645 7.169476 GTCACTTGACTAAGACTTGGTTAACTC 59.831 40.741 5.60 0.00 41.65 3.01
634 646 6.985059 GTCACTTGACTAAGACTTGGTTAACT 59.015 38.462 5.60 0.00 41.65 2.24
635 647 6.759827 TGTCACTTGACTAAGACTTGGTTAAC 59.240 38.462 5.60 0.00 44.99 2.01
646 658 5.661056 TGGGAGTATGTCACTTGACTAAG 57.339 43.478 10.63 0.00 44.99 2.18
648 660 5.519808 AGATGGGAGTATGTCACTTGACTA 58.480 41.667 10.63 0.00 44.99 2.59
722 739 9.838339 GATTCGGATTTCATTATCCCTATGTAT 57.162 33.333 0.00 0.00 40.90 2.29
727 744 6.210784 AGTCGATTCGGATTTCATTATCCCTA 59.789 38.462 6.18 0.00 40.90 3.53
740 757 4.579340 TGCTAAGTCTAAGTCGATTCGGAT 59.421 41.667 6.18 0.00 0.00 4.18
859 1045 3.523547 GTTTGGTTTGGTTTACGCCTTT 58.476 40.909 0.00 0.00 0.00 3.11
863 1049 2.580966 TGGTTTGGTTTGGTTTACGC 57.419 45.000 0.00 0.00 0.00 4.42
869 1055 4.835284 AGTCAATTTGGTTTGGTTTGGT 57.165 36.364 0.00 0.00 0.00 3.67
870 1056 5.757808 CCTAAGTCAATTTGGTTTGGTTTGG 59.242 40.000 0.00 0.00 0.00 3.28
871 1057 6.578023 TCCTAAGTCAATTTGGTTTGGTTTG 58.422 36.000 0.00 0.00 35.51 2.93
872 1058 6.800072 TCCTAAGTCAATTTGGTTTGGTTT 57.200 33.333 0.00 0.00 35.51 3.27
873 1059 6.800072 TTCCTAAGTCAATTTGGTTTGGTT 57.200 33.333 0.00 0.00 35.51 3.67
874 1060 6.800072 TTTCCTAAGTCAATTTGGTTTGGT 57.200 33.333 0.00 0.00 35.51 3.67
875 1061 7.011950 GGTTTTTCCTAAGTCAATTTGGTTTGG 59.988 37.037 0.00 2.36 35.51 3.28
876 1062 7.550906 TGGTTTTTCCTAAGTCAATTTGGTTTG 59.449 33.333 0.00 0.00 35.51 2.93
877 1063 7.551262 GTGGTTTTTCCTAAGTCAATTTGGTTT 59.449 33.333 0.00 0.00 35.51 3.27
878 1064 7.045416 GTGGTTTTTCCTAAGTCAATTTGGTT 58.955 34.615 0.00 0.00 35.51 3.67
879 1065 6.578944 GTGGTTTTTCCTAAGTCAATTTGGT 58.421 36.000 0.00 0.00 35.51 3.67
893 1079 1.673920 TGCTCAACTCGTGGTTTTTCC 59.326 47.619 0.00 0.00 35.74 3.13
895 1081 1.404035 GGTGCTCAACTCGTGGTTTTT 59.596 47.619 0.00 0.00 35.74 1.94
900 1086 1.300620 TTCGGTGCTCAACTCGTGG 60.301 57.895 0.00 0.00 0.00 4.94
902 1088 1.300697 GGTTCGGTGCTCAACTCGT 60.301 57.895 0.00 0.00 0.00 4.18
903 1089 2.027625 GGGTTCGGTGCTCAACTCG 61.028 63.158 0.00 0.00 0.00 4.18
904 1090 0.670854 GAGGGTTCGGTGCTCAACTC 60.671 60.000 0.00 0.00 0.00 3.01
905 1091 1.371558 GAGGGTTCGGTGCTCAACT 59.628 57.895 0.00 0.00 0.00 3.16
906 1092 2.027625 CGAGGGTTCGGTGCTCAAC 61.028 63.158 0.00 0.00 43.05 3.18
1044 1238 0.873743 CGAGGAAGGCGAAGATGAGC 60.874 60.000 0.00 0.00 0.00 4.26
1323 1523 2.037251 GGCGATCTTGTAGAGGCCATAA 59.963 50.000 5.01 0.00 43.36 1.90
1326 1526 1.823295 GGCGATCTTGTAGAGGCCA 59.177 57.895 5.01 0.00 43.36 5.36
1581 2109 2.029020 TCCGACTCAGAAATCACACCAG 60.029 50.000 0.00 0.00 0.00 4.00
1599 2127 1.654954 AATCTCTCGTGGTCGGTCCG 61.655 60.000 4.39 4.39 39.52 4.79
1636 2164 3.308401 AGCAAAAGTTGAACTTGGGGAT 58.692 40.909 11.83 0.24 38.66 3.85
1637 2165 2.745968 AGCAAAAGTTGAACTTGGGGA 58.254 42.857 11.83 0.00 38.66 4.81
1652 2180 6.947464 ACAACTCTAGCTAGGATTTAGCAAA 58.053 36.000 20.58 0.00 42.68 3.68
1682 2211 8.116026 AGAACCATTGGACCAATTCTAAGTATT 58.884 33.333 17.42 3.08 31.05 1.89
1701 2230 4.595781 TGTACACCAAACCTAGAGAACCAT 59.404 41.667 0.00 0.00 0.00 3.55
1731 2260 3.033659 ACCCATCGACAACCTAGAGAT 57.966 47.619 0.00 0.00 0.00 2.75
1790 2319 9.461312 TTGGATGCTCATGTTAAAGTAAAGTAT 57.539 29.630 0.00 0.00 0.00 2.12
1830 2360 9.851686 ATATTACTGGATTTAGATCAGTTGCAA 57.148 29.630 0.00 0.00 33.77 4.08
1869 2399 2.108776 AGCCCTCATAATTATGCAGCCA 59.891 45.455 18.89 2.60 33.76 4.75
2028 2569 7.553044 AGAACCTAGATACAGTTACCAAATTGC 59.447 37.037 0.00 0.00 0.00 3.56
2090 2633 5.014123 TCAGGGGAAAGTATCACAAACAGAT 59.986 40.000 0.00 0.00 30.77 2.90
2101 2644 4.478317 TCATGGATGTTCAGGGGAAAGTAT 59.522 41.667 0.00 0.00 34.13 2.12
2115 2658 8.303780 ACATTCTCGATATAGATCATGGATGT 57.696 34.615 7.35 7.35 32.55 3.06
2382 2927 7.926555 CCGGATGGCAATTACCTAGTAATATAG 59.073 40.741 0.00 0.00 37.69 1.31
2482 5320 2.575993 CCAGTGGACCAGCTCTCG 59.424 66.667 1.68 0.00 0.00 4.04
2488 5326 0.534412 CTACTGAGCCAGTGGACCAG 59.466 60.000 22.27 22.27 44.01 4.00
2500 5338 2.254546 TGTGCACCAAACCTACTGAG 57.745 50.000 15.69 0.00 0.00 3.35
2503 5341 1.318576 GCTTGTGCACCAAACCTACT 58.681 50.000 15.69 0.00 39.41 2.57
2636 5487 6.415206 TCAGGTTAAAGTAGCACTAACAGT 57.585 37.500 0.00 0.00 0.00 3.55
2665 5516 6.072728 TCAGTTGCGTTGAATATAAGCACTTT 60.073 34.615 0.00 0.00 37.57 2.66
2740 5591 4.312443 TGAAAAACTCTAAGCCCTACACG 58.688 43.478 0.00 0.00 0.00 4.49
2760 5611 5.337169 GCACTAAAGGGCATTACCAAAATGA 60.337 40.000 0.00 0.00 42.05 2.57
2830 5682 9.599866 TCTAAGGTTGATACATGTTTCACTATG 57.400 33.333 17.24 9.39 0.00 2.23
2831 5683 9.601217 GTCTAAGGTTGATACATGTTTCACTAT 57.399 33.333 17.24 7.98 0.00 2.12
2838 5690 9.449719 CTTAAAGGTCTAAGGTTGATACATGTT 57.550 33.333 2.30 0.00 0.00 2.71
2869 5721 1.269778 TGGAGAAACACAGACAGAGCG 60.270 52.381 0.00 0.00 0.00 5.03
2888 5740 3.195396 CACCCAGGGACAATTACCAAATG 59.805 47.826 14.54 0.00 0.00 2.32
2910 5762 3.447040 TGGTGAAGCCAAGCAAGC 58.553 55.556 0.00 0.00 45.94 4.01
3094 5946 1.334689 GCAAACAGTAAACGTCTGGGC 60.335 52.381 7.56 4.67 37.25 5.36
3096 5948 3.896648 ATGCAAACAGTAAACGTCTGG 57.103 42.857 7.56 0.00 37.25 3.86
3148 6002 8.744652 TGTATTGACTTTCCAAACTGAGAAAAA 58.255 29.630 0.00 0.00 31.91 1.94
3189 6043 4.329528 GCAAACAAGTGCTCAATCAACAAA 59.670 37.500 0.00 0.00 41.51 2.83
3399 6254 8.812513 TTCTGGAATCATGTCAAACAGATTAT 57.187 30.769 9.42 0.00 33.99 1.28
3400 6255 8.634335 TTTCTGGAATCATGTCAAACAGATTA 57.366 30.769 9.42 2.06 33.99 1.75
3401 6256 7.528996 TTTCTGGAATCATGTCAAACAGATT 57.471 32.000 9.42 0.00 33.99 2.40
3402 6257 7.528996 TTTTCTGGAATCATGTCAAACAGAT 57.471 32.000 9.42 0.00 33.99 2.90
3403 6258 6.957920 TTTTCTGGAATCATGTCAAACAGA 57.042 33.333 0.00 0.00 0.00 3.41
3404 6259 7.428020 TCTTTTTCTGGAATCATGTCAAACAG 58.572 34.615 0.00 0.00 0.00 3.16
3405 6260 7.345422 TCTTTTTCTGGAATCATGTCAAACA 57.655 32.000 0.00 0.00 0.00 2.83
3406 6261 8.647143 TTTCTTTTTCTGGAATCATGTCAAAC 57.353 30.769 0.00 0.00 0.00 2.93
3407 6262 8.694540 TCTTTCTTTTTCTGGAATCATGTCAAA 58.305 29.630 0.00 0.00 0.00 2.69
3408 6263 8.236585 TCTTTCTTTTTCTGGAATCATGTCAA 57.763 30.769 0.00 0.00 0.00 3.18
3409 6264 7.822161 TCTTTCTTTTTCTGGAATCATGTCA 57.178 32.000 0.00 0.00 0.00 3.58
3410 6265 7.758528 CCATCTTTCTTTTTCTGGAATCATGTC 59.241 37.037 0.00 0.00 0.00 3.06
3411 6266 7.310237 CCCATCTTTCTTTTTCTGGAATCATGT 60.310 37.037 0.00 0.00 0.00 3.21
3412 6267 7.039882 CCCATCTTTCTTTTTCTGGAATCATG 58.960 38.462 0.00 0.00 0.00 3.07
3765 6646 7.390718 ACCAGTTCATTGTAATCCTAGAAACAC 59.609 37.037 0.00 0.00 0.00 3.32
3840 6721 5.284864 TGCTTTTTAACGTCATCAATTGCA 58.715 33.333 0.00 0.00 0.00 4.08
3873 6754 6.779860 ACCTCTTATGTTGATTTGTACACCT 58.220 36.000 0.00 0.00 0.00 4.00
4099 6981 5.697633 ACTGCCTACAAATTTCAAAATGCAG 59.302 36.000 15.81 15.81 40.66 4.41
4115 6997 2.256117 ACACTCACCAAACTGCCTAC 57.744 50.000 0.00 0.00 0.00 3.18
4117 6999 3.508845 AATACACTCACCAAACTGCCT 57.491 42.857 0.00 0.00 0.00 4.75
4221 7103 3.558006 TGCCGACATGTAACAAATATCCG 59.442 43.478 0.00 0.00 0.00 4.18
4229 7111 1.155889 CAGCTTGCCGACATGTAACA 58.844 50.000 0.00 0.00 0.00 2.41
4282 7164 5.696724 AGATGAACTGAACCGACTGTTTAAG 59.303 40.000 0.00 0.00 37.29 1.85
4318 7200 8.656849 GCTGTACGATATTGATACTAAATTGGG 58.343 37.037 0.00 0.00 0.00 4.12
4326 7208 5.010112 ACTGCAGCTGTACGATATTGATACT 59.990 40.000 15.27 0.00 0.00 2.12
4382 7264 1.694150 TGGAGAGACAAGGGTTCAGTG 59.306 52.381 0.00 0.00 0.00 3.66
4389 7271 1.209019 CTGGACATGGAGAGACAAGGG 59.791 57.143 0.00 0.00 0.00 3.95
4556 7438 1.000385 CAGTTTGCCGGCTTCATGAAA 60.000 47.619 29.70 15.72 0.00 2.69
4605 7487 5.965853 ACTAGTAGTAGTAGCAGGAGGCGT 61.966 50.000 8.55 0.00 38.77 5.68
4606 7488 3.494749 ACTAGTAGTAGTAGCAGGAGGCG 60.495 52.174 8.55 0.00 38.77 5.52
4608 7490 3.816523 GCACTAGTAGTAGTAGCAGGAGG 59.183 52.174 19.05 5.60 37.40 4.30
4610 7492 3.743584 CGGCACTAGTAGTAGTAGCAGGA 60.744 52.174 22.51 0.00 37.40 3.86
4745 7633 3.636282 ACCGTATGAAACAGGCAAAAC 57.364 42.857 0.00 0.00 0.00 2.43
4896 7784 5.048991 ACCTTAATCTGTTTTTGCAGTACCG 60.049 40.000 0.00 0.00 37.70 4.02
5071 8103 1.808512 CGTGAACACAACCACTAGCCA 60.809 52.381 5.80 0.00 0.00 4.75
5075 8107 1.404748 TCGACGTGAACACAACCACTA 59.595 47.619 0.00 0.00 0.00 2.74
5153 8185 2.342279 CACGTTCTCCCAGCGGAA 59.658 61.111 0.00 0.00 37.86 4.30
5156 8188 2.805353 CGACACGTTCTCCCAGCG 60.805 66.667 0.00 0.00 0.00 5.18
5292 8324 1.247567 CGAAATTCCACCAAGGTGCT 58.752 50.000 13.75 0.00 44.16 4.40
5317 8349 4.803426 CACCAGACTCGCCGGAGC 62.803 72.222 5.05 0.00 44.48 4.70
5318 8350 2.418910 ATCACCAGACTCGCCGGAG 61.419 63.158 5.05 0.00 46.13 4.63
5319 8351 2.362503 ATCACCAGACTCGCCGGA 60.363 61.111 5.05 0.00 0.00 5.14
5321 8353 2.202797 CCATCACCAGACTCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
5323 8355 1.021390 CCAACCATCACCAGACTCGC 61.021 60.000 0.00 0.00 0.00 5.03
5324 8356 0.391661 CCCAACCATCACCAGACTCG 60.392 60.000 0.00 0.00 0.00 4.18
5325 8357 0.678048 GCCCAACCATCACCAGACTC 60.678 60.000 0.00 0.00 0.00 3.36
5366 8408 0.161024 GAACTGAAAAGCCGACGACG 59.839 55.000 0.00 0.00 39.43 5.12
5367 8409 1.070776 GTGAACTGAAAAGCCGACGAC 60.071 52.381 0.00 0.00 0.00 4.34
5368 8410 1.214367 GTGAACTGAAAAGCCGACGA 58.786 50.000 0.00 0.00 0.00 4.20
5369 8411 0.234884 GGTGAACTGAAAAGCCGACG 59.765 55.000 0.00 0.00 0.00 5.12
5370 8412 0.591659 GGGTGAACTGAAAAGCCGAC 59.408 55.000 0.00 0.00 0.00 4.79
5371 8413 0.536460 GGGGTGAACTGAAAAGCCGA 60.536 55.000 0.00 0.00 32.10 5.54
5372 8414 0.821711 TGGGGTGAACTGAAAAGCCG 60.822 55.000 0.00 0.00 32.10 5.52
5373 8415 1.408969 TTGGGGTGAACTGAAAAGCC 58.591 50.000 0.00 0.00 0.00 4.35
5374 8416 3.535280 TTTTGGGGTGAACTGAAAAGC 57.465 42.857 0.00 0.00 0.00 3.51
5375 8417 5.917462 AGATTTTTGGGGTGAACTGAAAAG 58.083 37.500 0.00 0.00 0.00 2.27
5376 8418 5.948742 AGATTTTTGGGGTGAACTGAAAA 57.051 34.783 0.00 0.00 0.00 2.29
5377 8419 6.609616 AGTTAGATTTTTGGGGTGAACTGAAA 59.390 34.615 0.00 0.00 0.00 2.69
5378 8420 6.133356 AGTTAGATTTTTGGGGTGAACTGAA 58.867 36.000 0.00 0.00 0.00 3.02
5379 8421 5.701224 AGTTAGATTTTTGGGGTGAACTGA 58.299 37.500 0.00 0.00 0.00 3.41
5380 8422 7.519032 TTAGTTAGATTTTTGGGGTGAACTG 57.481 36.000 0.00 0.00 0.00 3.16
5381 8423 8.541899 TTTTAGTTAGATTTTTGGGGTGAACT 57.458 30.769 0.00 0.00 0.00 3.01
5438 8481 4.718940 AACAAAATTATTGAGCTCCCCG 57.281 40.909 12.15 0.00 0.00 5.73
5453 8496 1.135333 GGTCGGCACTGGAAAACAAAA 59.865 47.619 0.00 0.00 0.00 2.44
5454 8497 0.741915 GGTCGGCACTGGAAAACAAA 59.258 50.000 0.00 0.00 0.00 2.83
5457 8500 1.441732 AACGGTCGGCACTGGAAAAC 61.442 55.000 0.00 0.00 32.44 2.43
5458 8501 0.748729 AAACGGTCGGCACTGGAAAA 60.749 50.000 0.00 0.00 32.44 2.29
5459 8502 0.748729 AAAACGGTCGGCACTGGAAA 60.749 50.000 0.00 0.00 32.44 3.13
5460 8503 1.153127 AAAACGGTCGGCACTGGAA 60.153 52.632 0.00 0.00 32.44 3.53
5497 8540 7.530426 AATCTCATAAAAGGCTTGAAACTGT 57.470 32.000 0.00 0.00 0.00 3.55
5498 8541 7.148689 GCAAATCTCATAAAAGGCTTGAAACTG 60.149 37.037 0.00 0.00 0.00 3.16
5499 8542 6.870439 GCAAATCTCATAAAAGGCTTGAAACT 59.130 34.615 0.00 0.00 0.00 2.66
5500 8543 6.870439 AGCAAATCTCATAAAAGGCTTGAAAC 59.130 34.615 0.00 0.00 0.00 2.78
5501 8544 6.996509 AGCAAATCTCATAAAAGGCTTGAAA 58.003 32.000 0.00 0.00 0.00 2.69
5502 8545 6.594788 AGCAAATCTCATAAAAGGCTTGAA 57.405 33.333 0.00 0.00 0.00 2.69
5503 8546 7.112122 TCTAGCAAATCTCATAAAAGGCTTGA 58.888 34.615 0.00 0.00 31.46 3.02
5504 8547 7.281774 TCTCTAGCAAATCTCATAAAAGGCTTG 59.718 37.037 0.00 0.00 0.00 4.01
5505 8548 7.341805 TCTCTAGCAAATCTCATAAAAGGCTT 58.658 34.615 0.00 0.00 0.00 4.35
5506 8549 6.893583 TCTCTAGCAAATCTCATAAAAGGCT 58.106 36.000 0.00 0.00 0.00 4.58
5507 8550 7.583230 CATCTCTAGCAAATCTCATAAAAGGC 58.417 38.462 0.00 0.00 0.00 4.35
5508 8551 7.444792 AGCATCTCTAGCAAATCTCATAAAAGG 59.555 37.037 0.00 0.00 0.00 3.11
5509 8552 8.380743 AGCATCTCTAGCAAATCTCATAAAAG 57.619 34.615 0.00 0.00 0.00 2.27
5510 8553 8.743085 AAGCATCTCTAGCAAATCTCATAAAA 57.257 30.769 0.00 0.00 0.00 1.52
5511 8554 8.209584 AGAAGCATCTCTAGCAAATCTCATAAA 58.790 33.333 0.00 0.00 0.00 1.40
5512 8555 7.733969 AGAAGCATCTCTAGCAAATCTCATAA 58.266 34.615 0.00 0.00 0.00 1.90
5513 8556 7.300556 AGAAGCATCTCTAGCAAATCTCATA 57.699 36.000 0.00 0.00 0.00 2.15
5514 8557 6.177310 AGAAGCATCTCTAGCAAATCTCAT 57.823 37.500 0.00 0.00 0.00 2.90
5515 8558 5.611128 AGAAGCATCTCTAGCAAATCTCA 57.389 39.130 0.00 0.00 0.00 3.27
5528 8571 5.424895 AGATGTTCTAGTTGGAGAAGCATCT 59.575 40.000 16.71 16.71 42.16 2.90
5529 8572 5.523188 CAGATGTTCTAGTTGGAGAAGCATC 59.477 44.000 14.30 14.30 40.15 3.91
5530 8573 5.046014 ACAGATGTTCTAGTTGGAGAAGCAT 60.046 40.000 0.00 0.00 36.13 3.79
5531 8574 4.284490 ACAGATGTTCTAGTTGGAGAAGCA 59.716 41.667 0.00 0.00 36.13 3.91
5532 8575 4.826556 ACAGATGTTCTAGTTGGAGAAGC 58.173 43.478 0.00 0.00 36.13 3.86
5533 8576 7.397892 TCTACAGATGTTCTAGTTGGAGAAG 57.602 40.000 0.00 0.00 36.13 2.85
5534 8577 7.776107 CATCTACAGATGTTCTAGTTGGAGAA 58.224 38.462 10.50 0.00 45.10 2.87
5535 8578 7.340122 CATCTACAGATGTTCTAGTTGGAGA 57.660 40.000 10.50 0.00 45.10 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.