Multiple sequence alignment - TraesCS2A01G585500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G585500 chr2A 100.000 4041 0 0 1 4041 776211930 776215970 0.000000e+00 7463.0
1 TraesCS2A01G585500 chr2A 86.822 2398 220 45 909 3249 776170900 776168542 0.000000e+00 2590.0
2 TraesCS2A01G585500 chr2A 100.000 28 0 0 2630 2657 762591066 762591093 7.000000e-03 52.8
3 TraesCS2A01G585500 chr6D 90.125 2329 146 37 904 3172 69108810 69106506 0.000000e+00 2950.0
4 TraesCS2A01G585500 chr6D 94.792 192 9 1 3797 3987 229229337 229229146 8.490000e-77 298.0
5 TraesCS2A01G585500 chr6D 90.323 62 3 2 3710 3770 229229395 229229336 1.200000e-10 78.7
6 TraesCS2A01G585500 chr2D 89.892 2325 151 39 904 3169 117631149 117633448 0.000000e+00 2915.0
7 TraesCS2A01G585500 chr2D 89.334 2072 156 27 906 2925 651431631 651433689 0.000000e+00 2542.0
8 TraesCS2A01G585500 chr2D 85.770 1792 156 41 1035 2774 651574823 651576567 0.000000e+00 1805.0
9 TraesCS2A01G585500 chr2D 88.653 1366 96 28 1854 3172 651422747 651421394 0.000000e+00 1609.0
10 TraesCS2A01G585500 chr2D 88.315 445 27 11 904 1335 452099256 452099688 1.000000e-140 510.0
11 TraesCS2A01G585500 chr2D 77.437 718 82 44 374 1046 651573720 651574402 4.970000e-94 355.0
12 TraesCS2A01G585500 chr2D 94.792 192 9 1 3797 3987 542835772 542835581 8.490000e-77 298.0
13 TraesCS2A01G585500 chr2D 96.552 116 4 0 3384 3499 651420961 651420846 4.120000e-45 193.0
14 TraesCS2A01G585500 chr2D 85.938 192 9 7 3797 3987 566193769 566193595 5.330000e-44 189.0
15 TraesCS2A01G585500 chr2D 90.083 121 9 1 3131 3251 651421379 651421262 1.940000e-33 154.0
16 TraesCS2A01G585500 chr2D 87.805 123 9 4 3251 3371 651421185 651421067 5.450000e-29 139.0
17 TraesCS2A01G585500 chr2D 87.013 77 10 0 784 860 651431453 651431529 2.000000e-13 87.9
18 TraesCS2A01G585500 chr2D 100.000 44 0 0 3456 3499 651420840 651420797 9.310000e-12 82.4
19 TraesCS2A01G585500 chr2D 90.323 62 3 2 3710 3770 566193827 566193768 1.200000e-10 78.7
20 TraesCS2A01G585500 chr2D 88.710 62 4 2 3710 3770 542835830 542835771 5.600000e-09 73.1
21 TraesCS2A01G585500 chr2D 97.619 42 1 0 860 901 651431564 651431605 5.600000e-09 73.1
22 TraesCS2A01G585500 chr2B 92.166 1953 93 30 777 2675 780875439 780873493 0.000000e+00 2704.0
23 TraesCS2A01G585500 chr2B 87.031 2321 225 33 906 3173 781149601 781151898 0.000000e+00 2549.0
24 TraesCS2A01G585500 chr2B 86.205 1631 161 30 1566 3159 781085479 781083876 0.000000e+00 1707.0
25 TraesCS2A01G585500 chr2B 93.878 1127 59 4 2043 3159 780829667 780828541 0.000000e+00 1690.0
26 TraesCS2A01G585500 chr2B 90.584 531 38 10 2651 3181 780873472 780872954 0.000000e+00 693.0
27 TraesCS2A01G585500 chr2B 95.868 121 5 0 3131 3251 780828537 780828417 3.190000e-46 196.0
28 TraesCS2A01G585500 chr2B 95.868 121 5 0 3131 3251 781083872 781083752 3.190000e-46 196.0
29 TraesCS2A01G585500 chr2B 89.796 98 5 4 3251 3347 780828344 780828251 1.970000e-23 121.0
30 TraesCS2A01G585500 chr2B 97.015 67 2 0 3531 3597 781006275 781006209 3.300000e-21 113.0
31 TraesCS2A01G585500 chr2B 79.630 162 25 4 3665 3822 781082888 781082731 4.270000e-20 110.0
32 TraesCS2A01G585500 chr2B 82.787 122 12 5 3383 3499 781006933 781006816 2.570000e-17 100.0
33 TraesCS2A01G585500 chr2B 95.238 42 2 0 860 901 781149534 781149575 2.610000e-07 67.6
34 TraesCS2A01G585500 chr4A 79.916 2141 310 62 1000 3060 632615726 632617826 0.000000e+00 1461.0
35 TraesCS2A01G585500 chrUn 90.450 911 79 6 1284 2192 23720237 23719333 0.000000e+00 1194.0
36 TraesCS2A01G585500 chrUn 91.553 438 36 1 2653 3089 23718736 23718299 1.610000e-168 603.0
37 TraesCS2A01G585500 chrUn 85.484 310 23 10 3540 3838 23716833 23716535 1.820000e-78 303.0
38 TraesCS2A01G585500 chrUn 87.417 151 7 1 1197 1335 471700303 471700153 3.230000e-36 163.0
39 TraesCS2A01G585500 chrUn 89.344 122 8 5 3251 3371 23718028 23717911 9.050000e-32 148.0
40 TraesCS2A01G585500 chrUn 88.889 117 13 0 3383 3499 23717455 23717339 1.170000e-30 145.0
41 TraesCS2A01G585500 chrUn 83.439 157 16 3 3834 3989 23714076 23713929 1.960000e-28 137.0
42 TraesCS2A01G585500 chr6B 81.025 1386 232 16 1035 2415 698121810 698120451 0.000000e+00 1074.0
43 TraesCS2A01G585500 chr6B 96.875 32 1 0 2626 2657 337845371 337845340 2.000000e-03 54.7
44 TraesCS2A01G585500 chr7D 96.147 545 13 3 1539 2082 9670668 9671205 0.000000e+00 883.0
45 TraesCS2A01G585500 chr7D 88.539 445 26 11 904 1335 35740846 35740414 2.150000e-142 516.0
46 TraesCS2A01G585500 chr7D 95.312 192 8 1 3797 3987 109136181 109135990 1.820000e-78 303.0
47 TraesCS2A01G585500 chr7D 94.792 192 9 1 3797 3987 460980055 460980246 8.490000e-77 298.0
48 TraesCS2A01G585500 chr7D 90.323 62 3 2 3710 3770 109136239 109136180 1.200000e-10 78.7
49 TraesCS2A01G585500 chr7D 97.297 37 0 1 3710 3745 460979997 460980033 1.210000e-05 62.1
50 TraesCS2A01G585500 chr7D 100.000 28 0 0 2630 2657 443416078 443416105 7.000000e-03 52.8
51 TraesCS2A01G585500 chr5D 88.764 445 25 11 904 1335 548473936 548473504 4.630000e-144 521.0
52 TraesCS2A01G585500 chr5D 94.792 192 9 1 3797 3987 407454236 407454427 8.490000e-77 298.0
53 TraesCS2A01G585500 chr5D 94.271 192 10 1 3797 3987 297937102 297937293 3.950000e-75 292.0
54 TraesCS2A01G585500 chr5D 90.323 62 3 2 3710 3770 297937044 297937103 1.200000e-10 78.7
55 TraesCS2A01G585500 chr5D 88.710 62 4 2 3710 3770 407454178 407454237 5.600000e-09 73.1
56 TraesCS2A01G585500 chr4D 88.539 445 26 11 904 1335 280249029 280248597 2.150000e-142 516.0
57 TraesCS2A01G585500 chr4D 88.090 445 28 9 904 1335 78722486 78722918 4.660000e-139 505.0
58 TraesCS2A01G585500 chr4D 85.455 55 8 0 1 55 488805548 488805494 1.570000e-04 58.4
59 TraesCS2A01G585500 chr1D 88.539 445 26 11 904 1335 264045101 264044669 2.150000e-142 516.0
60 TraesCS2A01G585500 chr5B 76.866 804 156 20 999 1781 697832238 697831444 1.040000e-115 427.0
61 TraesCS2A01G585500 chr7A 90.295 237 23 0 57 293 660033813 660034049 1.090000e-80 311.0
62 TraesCS2A01G585500 chr7A 100.000 28 0 0 2630 2657 584391516 584391543 7.000000e-03 52.8
63 TraesCS2A01G585500 chr3D 100.000 28 0 0 2630 2657 297496892 297496865 7.000000e-03 52.8
64 TraesCS2A01G585500 chr3A 100.000 28 0 0 2630 2657 391471511 391471538 7.000000e-03 52.8
65 TraesCS2A01G585500 chr1A 100.000 28 0 0 2630 2657 564136505 564136478 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G585500 chr2A 776211930 776215970 4040 False 7463.000000 7463 100.000000 1 4041 1 chr2A.!!$F2 4040
1 TraesCS2A01G585500 chr2A 776168542 776170900 2358 True 2590.000000 2590 86.822000 909 3249 1 chr2A.!!$R1 2340
2 TraesCS2A01G585500 chr6D 69106506 69108810 2304 True 2950.000000 2950 90.125000 904 3172 1 chr6D.!!$R1 2268
3 TraesCS2A01G585500 chr2D 117631149 117633448 2299 False 2915.000000 2915 89.892000 904 3169 1 chr2D.!!$F1 2265
4 TraesCS2A01G585500 chr2D 651573720 651576567 2847 False 1080.000000 1805 81.603500 374 2774 2 chr2D.!!$F4 2400
5 TraesCS2A01G585500 chr2D 651431453 651433689 2236 False 901.000000 2542 91.322000 784 2925 3 chr2D.!!$F3 2141
6 TraesCS2A01G585500 chr2D 651420797 651422747 1950 True 435.480000 1609 92.618600 1854 3499 5 chr2D.!!$R3 1645
7 TraesCS2A01G585500 chr2B 780872954 780875439 2485 True 1698.500000 2704 91.375000 777 3181 2 chr2B.!!$R2 2404
8 TraesCS2A01G585500 chr2B 781149534 781151898 2364 False 1308.300000 2549 91.134500 860 3173 2 chr2B.!!$F1 2313
9 TraesCS2A01G585500 chr2B 781082731 781085479 2748 True 671.000000 1707 87.234333 1566 3822 3 chr2B.!!$R4 2256
10 TraesCS2A01G585500 chr2B 780828251 780829667 1416 True 669.000000 1690 93.180667 2043 3347 3 chr2B.!!$R1 1304
11 TraesCS2A01G585500 chr4A 632615726 632617826 2100 False 1461.000000 1461 79.916000 1000 3060 1 chr4A.!!$F1 2060
12 TraesCS2A01G585500 chrUn 23713929 23720237 6308 True 421.666667 1194 88.193167 1284 3989 6 chrUn.!!$R2 2705
13 TraesCS2A01G585500 chr6B 698120451 698121810 1359 True 1074.000000 1074 81.025000 1035 2415 1 chr6B.!!$R2 1380
14 TraesCS2A01G585500 chr7D 9670668 9671205 537 False 883.000000 883 96.147000 1539 2082 1 chr7D.!!$F1 543
15 TraesCS2A01G585500 chr5B 697831444 697832238 794 True 427.000000 427 76.866000 999 1781 1 chr5B.!!$R1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 287 0.033366 CCTTCCAAAACAAAGGGCCG 59.967 55.0 0.00 0.0 38.72 6.13 F
287 288 0.033366 CTTCCAAAACAAAGGGCCGG 59.967 55.0 0.00 0.0 0.00 6.13 F
315 316 0.654683 GCACGCAATCTAGCAAGAGG 59.345 55.0 0.00 0.0 34.49 3.69 F
470 474 0.757188 TTTTCTGGAAAGCCGGCCAA 60.757 50.0 26.15 0.0 40.61 4.52 F
1622 2174 0.805322 GATCTGCACTCCACGCTCAG 60.805 60.0 0.00 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 2174 0.745845 AGAGCACGGCACATCAATCC 60.746 55.000 0.00 0.0 0.00 3.01 R
2095 2657 1.274447 CCAGCTCAGATCACACTCACA 59.726 52.381 0.00 0.0 0.00 3.58 R
2323 2920 1.062587 GCGGCTTGTATGCACTACTTG 59.937 52.381 0.00 0.0 34.04 3.16 R
2587 3339 9.301153 AGGAATTTGCATGAATTAAATCGTAAC 57.699 29.630 0.00 0.0 29.75 2.50 R
3143 3977 0.040499 TTCCCAGGCCACCAATAACC 59.960 55.000 5.01 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.760660 CTTTGCACTAAAGCTAGTATAAAGTTG 57.239 33.333 12.37 0.00 39.36 3.16
27 28 9.496873 TTTGCACTAAAGCTAGTATAAAGTTGA 57.503 29.630 0.00 0.00 36.14 3.18
28 29 8.703604 TGCACTAAAGCTAGTATAAAGTTGAG 57.296 34.615 0.00 0.00 36.14 3.02
29 30 8.311836 TGCACTAAAGCTAGTATAAAGTTGAGT 58.688 33.333 0.00 0.00 36.14 3.41
30 31 8.809478 GCACTAAAGCTAGTATAAAGTTGAGTC 58.191 37.037 0.00 0.00 36.14 3.36
51 52 9.973661 TGAGTCTAATATTTTGAAATGGAAGGA 57.026 29.630 0.00 0.00 0.00 3.36
53 54 9.981460 AGTCTAATATTTTGAAATGGAAGGAGT 57.019 29.630 0.00 0.00 0.00 3.85
59 60 7.781324 ATTTTGAAATGGAAGGAGTATGTGT 57.219 32.000 0.00 0.00 0.00 3.72
60 61 7.595819 TTTTGAAATGGAAGGAGTATGTGTT 57.404 32.000 0.00 0.00 0.00 3.32
61 62 8.698973 TTTTGAAATGGAAGGAGTATGTGTTA 57.301 30.769 0.00 0.00 0.00 2.41
62 63 8.698973 TTTGAAATGGAAGGAGTATGTGTTAA 57.301 30.769 0.00 0.00 0.00 2.01
63 64 8.877864 TTGAAATGGAAGGAGTATGTGTTAAT 57.122 30.769 0.00 0.00 0.00 1.40
64 65 8.506168 TGAAATGGAAGGAGTATGTGTTAATC 57.494 34.615 0.00 0.00 0.00 1.75
65 66 7.556275 TGAAATGGAAGGAGTATGTGTTAATCC 59.444 37.037 0.00 0.00 43.93 3.01
66 67 6.575244 ATGGAAGGAGTATGTGTTAATCCA 57.425 37.500 2.41 0.00 45.62 3.41
67 68 6.575244 TGGAAGGAGTATGTGTTAATCCAT 57.425 37.500 2.41 0.00 45.62 3.41
68 69 6.591935 TGGAAGGAGTATGTGTTAATCCATC 58.408 40.000 2.41 0.00 45.62 3.51
70 71 6.831664 AAGGAGTATGTGTTAATCCATCCT 57.168 37.500 2.41 0.00 45.62 3.24
71 72 6.426646 AGGAGTATGTGTTAATCCATCCTC 57.573 41.667 2.41 2.98 45.62 3.71
72 73 5.905331 AGGAGTATGTGTTAATCCATCCTCA 59.095 40.000 10.16 0.00 45.62 3.86
73 74 6.386927 AGGAGTATGTGTTAATCCATCCTCAA 59.613 38.462 10.16 0.00 45.62 3.02
74 75 7.054124 GGAGTATGTGTTAATCCATCCTCAAA 58.946 38.462 10.16 0.00 43.24 2.69
75 76 7.721399 GGAGTATGTGTTAATCCATCCTCAAAT 59.279 37.037 10.16 0.00 43.24 2.32
76 77 9.125026 GAGTATGTGTTAATCCATCCTCAAATT 57.875 33.333 5.55 0.00 27.94 1.82
77 78 9.125026 AGTATGTGTTAATCCATCCTCAAATTC 57.875 33.333 0.00 0.00 0.00 2.17
78 79 7.959658 ATGTGTTAATCCATCCTCAAATTCA 57.040 32.000 0.00 0.00 0.00 2.57
79 80 7.395190 TGTGTTAATCCATCCTCAAATTCAG 57.605 36.000 0.00 0.00 0.00 3.02
80 81 6.947733 TGTGTTAATCCATCCTCAAATTCAGT 59.052 34.615 0.00 0.00 0.00 3.41
81 82 7.094248 TGTGTTAATCCATCCTCAAATTCAGTG 60.094 37.037 0.00 0.00 0.00 3.66
82 83 6.947733 TGTTAATCCATCCTCAAATTCAGTGT 59.052 34.615 0.00 0.00 0.00 3.55
83 84 8.106462 TGTTAATCCATCCTCAAATTCAGTGTA 58.894 33.333 0.00 0.00 0.00 2.90
84 85 8.398665 GTTAATCCATCCTCAAATTCAGTGTAC 58.601 37.037 0.00 0.00 0.00 2.90
85 86 5.762179 TCCATCCTCAAATTCAGTGTACT 57.238 39.130 0.00 0.00 0.00 2.73
86 87 5.491070 TCCATCCTCAAATTCAGTGTACTG 58.509 41.667 5.67 5.67 45.08 2.74
87 88 5.013079 TCCATCCTCAAATTCAGTGTACTGT 59.987 40.000 11.44 0.00 44.12 3.55
88 89 5.352569 CCATCCTCAAATTCAGTGTACTGTC 59.647 44.000 11.44 0.00 44.12 3.51
89 90 5.808366 TCCTCAAATTCAGTGTACTGTCT 57.192 39.130 11.44 0.00 44.12 3.41
90 91 6.911250 TCCTCAAATTCAGTGTACTGTCTA 57.089 37.500 11.44 0.46 44.12 2.59
91 92 7.482169 TCCTCAAATTCAGTGTACTGTCTAT 57.518 36.000 11.44 2.56 44.12 1.98
92 93 8.589701 TCCTCAAATTCAGTGTACTGTCTATA 57.410 34.615 11.44 0.00 44.12 1.31
93 94 9.201989 TCCTCAAATTCAGTGTACTGTCTATAT 57.798 33.333 11.44 0.00 44.12 0.86
94 95 9.254133 CCTCAAATTCAGTGTACTGTCTATATG 57.746 37.037 11.44 5.73 44.12 1.78
148 149 9.736023 ATTTGTAATTGTCTGTGTTCTCTTTTC 57.264 29.630 0.00 0.00 0.00 2.29
149 150 8.506168 TTGTAATTGTCTGTGTTCTCTTTTCT 57.494 30.769 0.00 0.00 0.00 2.52
150 151 8.506168 TGTAATTGTCTGTGTTCTCTTTTCTT 57.494 30.769 0.00 0.00 0.00 2.52
151 152 8.612619 TGTAATTGTCTGTGTTCTCTTTTCTTC 58.387 33.333 0.00 0.00 0.00 2.87
152 153 5.718649 TTGTCTGTGTTCTCTTTTCTTCG 57.281 39.130 0.00 0.00 0.00 3.79
153 154 4.755411 TGTCTGTGTTCTCTTTTCTTCGT 58.245 39.130 0.00 0.00 0.00 3.85
154 155 5.898174 TGTCTGTGTTCTCTTTTCTTCGTA 58.102 37.500 0.00 0.00 0.00 3.43
155 156 6.334989 TGTCTGTGTTCTCTTTTCTTCGTAA 58.665 36.000 0.00 0.00 0.00 3.18
156 157 6.984474 TGTCTGTGTTCTCTTTTCTTCGTAAT 59.016 34.615 0.00 0.00 0.00 1.89
157 158 7.494625 TGTCTGTGTTCTCTTTTCTTCGTAATT 59.505 33.333 0.00 0.00 0.00 1.40
158 159 8.336080 GTCTGTGTTCTCTTTTCTTCGTAATTT 58.664 33.333 0.00 0.00 0.00 1.82
159 160 8.889717 TCTGTGTTCTCTTTTCTTCGTAATTTT 58.110 29.630 0.00 0.00 0.00 1.82
162 163 9.595357 GTGTTCTCTTTTCTTCGTAATTTTAGG 57.405 33.333 0.00 0.00 0.00 2.69
163 164 9.550406 TGTTCTCTTTTCTTCGTAATTTTAGGA 57.450 29.630 0.00 0.00 0.00 2.94
186 187 9.331282 AGGATAATAGTCTGCTTTACAACATTC 57.669 33.333 0.00 0.00 0.00 2.67
187 188 9.331282 GGATAATAGTCTGCTTTACAACATTCT 57.669 33.333 0.00 0.00 0.00 2.40
193 194 8.677148 AGTCTGCTTTACAACATTCTTTAAGA 57.323 30.769 0.00 0.00 0.00 2.10
194 195 9.120538 AGTCTGCTTTACAACATTCTTTAAGAA 57.879 29.630 9.99 9.99 38.78 2.52
195 196 9.387123 GTCTGCTTTACAACATTCTTTAAGAAG 57.613 33.333 13.07 7.80 37.69 2.85
196 197 8.076178 TCTGCTTTACAACATTCTTTAAGAAGC 58.924 33.333 13.07 7.84 37.69 3.86
197 198 7.145323 TGCTTTACAACATTCTTTAAGAAGCC 58.855 34.615 13.07 0.00 37.69 4.35
198 199 7.014230 TGCTTTACAACATTCTTTAAGAAGCCT 59.986 33.333 13.07 0.00 37.69 4.58
199 200 7.867909 GCTTTACAACATTCTTTAAGAAGCCTT 59.132 33.333 13.07 1.84 37.69 4.35
200 201 9.185192 CTTTACAACATTCTTTAAGAAGCCTTG 57.815 33.333 13.07 14.10 37.69 3.61
201 202 5.532557 ACAACATTCTTTAAGAAGCCTTGC 58.467 37.500 13.07 0.00 37.69 4.01
202 203 5.302823 ACAACATTCTTTAAGAAGCCTTGCT 59.697 36.000 13.07 0.00 42.56 3.91
203 204 5.382618 ACATTCTTTAAGAAGCCTTGCTG 57.617 39.130 13.07 7.03 39.62 4.41
204 205 5.072741 ACATTCTTTAAGAAGCCTTGCTGA 58.927 37.500 13.07 0.00 39.62 4.26
205 206 5.536161 ACATTCTTTAAGAAGCCTTGCTGAA 59.464 36.000 13.07 0.00 39.62 3.02
206 207 6.040842 ACATTCTTTAAGAAGCCTTGCTGAAA 59.959 34.615 13.07 0.00 39.62 2.69
207 208 6.463995 TTCTTTAAGAAGCCTTGCTGAAAA 57.536 33.333 2.94 0.00 39.62 2.29
208 209 6.463995 TCTTTAAGAAGCCTTGCTGAAAAA 57.536 33.333 0.00 0.00 39.62 1.94
226 227 3.423996 AAAAATGGCGTTTACGTGTGT 57.576 38.095 4.90 0.00 42.22 3.72
227 228 2.673976 AAATGGCGTTTACGTGTGTC 57.326 45.000 2.11 0.00 42.22 3.67
228 229 1.873698 AATGGCGTTTACGTGTGTCT 58.126 45.000 0.00 0.00 42.22 3.41
229 230 1.873698 ATGGCGTTTACGTGTGTCTT 58.126 45.000 0.00 0.00 42.22 3.01
230 231 2.505628 TGGCGTTTACGTGTGTCTTA 57.494 45.000 0.00 0.00 42.22 2.10
231 232 2.126467 TGGCGTTTACGTGTGTCTTAC 58.874 47.619 0.00 0.00 42.22 2.34
232 233 1.123038 GGCGTTTACGTGTGTCTTACG 59.877 52.381 0.00 0.00 46.31 3.18
233 234 2.043411 GCGTTTACGTGTGTCTTACGA 58.957 47.619 0.00 0.00 43.82 3.43
234 235 2.160233 GCGTTTACGTGTGTCTTACGAC 60.160 50.000 0.00 0.00 43.82 4.34
235 236 3.291585 CGTTTACGTGTGTCTTACGACT 58.708 45.455 0.00 0.00 43.82 4.18
236 237 3.725740 CGTTTACGTGTGTCTTACGACTT 59.274 43.478 0.00 0.00 43.82 3.01
237 238 4.903585 CGTTTACGTGTGTCTTACGACTTA 59.096 41.667 0.00 0.00 43.82 2.24
238 239 5.057286 CGTTTACGTGTGTCTTACGACTTAG 59.943 44.000 0.00 0.00 43.82 2.18
239 240 3.549299 ACGTGTGTCTTACGACTTAGG 57.451 47.619 4.43 0.00 43.82 2.69
240 241 2.227388 ACGTGTGTCTTACGACTTAGGG 59.773 50.000 4.43 0.00 43.82 3.53
241 242 2.415090 CGTGTGTCTTACGACTTAGGGG 60.415 54.545 0.68 0.00 43.82 4.79
242 243 1.547372 TGTGTCTTACGACTTAGGGGC 59.453 52.381 0.68 0.00 40.86 5.80
243 244 1.134877 GTGTCTTACGACTTAGGGGCC 60.135 57.143 0.00 0.00 40.86 5.80
244 245 0.463204 GTCTTACGACTTAGGGGCCC 59.537 60.000 17.12 17.12 37.19 5.80
245 246 0.041535 TCTTACGACTTAGGGGCCCA 59.958 55.000 27.72 8.13 0.00 5.36
246 247 1.129058 CTTACGACTTAGGGGCCCAT 58.871 55.000 27.72 21.79 0.00 4.00
247 248 2.091166 TCTTACGACTTAGGGGCCCATA 60.091 50.000 27.72 20.37 0.00 2.74
248 249 2.708037 TACGACTTAGGGGCCCATAT 57.292 50.000 27.72 6.71 0.00 1.78
249 250 1.349067 ACGACTTAGGGGCCCATATC 58.651 55.000 27.72 15.60 0.00 1.63
250 251 0.246635 CGACTTAGGGGCCCATATCG 59.753 60.000 27.72 23.54 0.00 2.92
251 252 1.349067 GACTTAGGGGCCCATATCGT 58.651 55.000 27.72 20.51 0.00 3.73
252 253 1.275573 GACTTAGGGGCCCATATCGTC 59.724 57.143 27.72 24.20 0.00 4.20
253 254 0.246635 CTTAGGGGCCCATATCGTCG 59.753 60.000 27.72 3.52 0.00 5.12
254 255 0.178955 TTAGGGGCCCATATCGTCGA 60.179 55.000 27.72 0.60 0.00 4.20
255 256 0.611062 TAGGGGCCCATATCGTCGAG 60.611 60.000 27.72 0.00 0.00 4.04
256 257 2.657237 GGGCCCATATCGTCGAGG 59.343 66.667 19.95 0.00 0.00 4.63
257 258 2.207924 GGGCCCATATCGTCGAGGT 61.208 63.158 19.95 0.00 0.00 3.85
258 259 1.289380 GGCCCATATCGTCGAGGTC 59.711 63.158 4.85 0.00 0.00 3.85
259 260 1.081376 GCCCATATCGTCGAGGTCG 60.081 63.158 4.85 0.00 41.45 4.79
260 261 1.081376 CCCATATCGTCGAGGTCGC 60.081 63.158 4.85 0.00 39.60 5.19
261 262 1.081376 CCATATCGTCGAGGTCGCC 60.081 63.158 4.85 0.00 39.60 5.54
262 263 1.516365 CCATATCGTCGAGGTCGCCT 61.516 60.000 4.85 0.00 39.60 5.52
263 264 1.154197 CATATCGTCGAGGTCGCCTA 58.846 55.000 4.85 0.00 39.60 3.93
264 265 1.128878 CATATCGTCGAGGTCGCCTAG 59.871 57.143 4.85 0.00 39.60 3.02
265 266 0.602106 TATCGTCGAGGTCGCCTAGG 60.602 60.000 3.67 3.67 39.60 3.02
266 267 3.584052 CGTCGAGGTCGCCTAGGG 61.584 72.222 11.72 0.44 39.60 3.53
267 268 3.902086 GTCGAGGTCGCCTAGGGC 61.902 72.222 11.72 1.76 46.75 5.19
277 278 2.579878 GCCTAGGGCCTTCCAAAAC 58.420 57.895 13.45 0.00 44.06 2.43
278 279 0.251608 GCCTAGGGCCTTCCAAAACA 60.252 55.000 13.45 0.00 44.06 2.83
279 280 1.825641 GCCTAGGGCCTTCCAAAACAA 60.826 52.381 13.45 0.00 44.06 2.83
280 281 2.604139 CCTAGGGCCTTCCAAAACAAA 58.396 47.619 13.45 0.00 38.24 2.83
281 282 2.562738 CCTAGGGCCTTCCAAAACAAAG 59.437 50.000 13.45 0.00 38.24 2.77
282 283 1.423584 AGGGCCTTCCAAAACAAAGG 58.576 50.000 0.00 0.00 44.10 3.11
283 284 0.396435 GGGCCTTCCAAAACAAAGGG 59.604 55.000 0.84 0.00 41.99 3.95
284 285 3.305709 GCCTTCCAAAACAAAGGGC 57.694 52.632 3.53 0.00 41.99 5.19
285 286 0.250295 GCCTTCCAAAACAAAGGGCC 60.250 55.000 0.00 0.00 41.99 5.80
286 287 0.033366 CCTTCCAAAACAAAGGGCCG 59.967 55.000 0.00 0.00 38.72 6.13
287 288 0.033366 CTTCCAAAACAAAGGGCCGG 59.967 55.000 0.00 0.00 0.00 6.13
288 289 2.030412 CCAAAACAAAGGGCCGGC 59.970 61.111 21.18 21.18 0.00 6.13
289 290 2.030412 CAAAACAAAGGGCCGGCC 59.970 61.111 38.57 38.57 0.00 6.13
303 304 3.910490 GGCCCTGTTTGCACGCAA 61.910 61.111 0.00 0.00 0.00 4.85
304 305 2.339712 GCCCTGTTTGCACGCAAT 59.660 55.556 5.11 0.00 35.70 3.56
305 306 1.734117 GCCCTGTTTGCACGCAATC 60.734 57.895 5.11 5.61 35.70 2.67
306 307 1.959085 CCCTGTTTGCACGCAATCT 59.041 52.632 5.11 0.00 35.70 2.40
307 308 1.164411 CCCTGTTTGCACGCAATCTA 58.836 50.000 5.11 0.00 35.70 1.98
308 309 1.131126 CCCTGTTTGCACGCAATCTAG 59.869 52.381 5.11 4.68 35.70 2.43
309 310 1.466360 CCTGTTTGCACGCAATCTAGC 60.466 52.381 5.11 0.00 35.70 3.42
310 311 1.197492 CTGTTTGCACGCAATCTAGCA 59.803 47.619 5.11 0.00 35.70 3.49
311 312 1.606189 TGTTTGCACGCAATCTAGCAA 59.394 42.857 5.11 0.00 44.36 3.91
312 313 2.245096 GTTTGCACGCAATCTAGCAAG 58.755 47.619 5.11 0.00 46.24 4.01
313 314 1.807139 TTGCACGCAATCTAGCAAGA 58.193 45.000 0.00 0.00 41.55 3.02
314 315 1.362768 TGCACGCAATCTAGCAAGAG 58.637 50.000 0.00 0.00 34.49 2.85
315 316 0.654683 GCACGCAATCTAGCAAGAGG 59.345 55.000 0.00 0.00 34.49 3.69
316 317 2.009042 GCACGCAATCTAGCAAGAGGT 61.009 52.381 0.00 0.00 34.49 3.85
317 318 2.738643 GCACGCAATCTAGCAAGAGGTA 60.739 50.000 0.00 0.00 34.49 3.08
318 319 3.722147 CACGCAATCTAGCAAGAGGTAT 58.278 45.455 0.00 0.00 34.49 2.73
319 320 4.796290 GCACGCAATCTAGCAAGAGGTATA 60.796 45.833 0.00 0.00 34.49 1.47
320 321 5.289595 CACGCAATCTAGCAAGAGGTATAA 58.710 41.667 0.00 0.00 34.49 0.98
321 322 5.753438 CACGCAATCTAGCAAGAGGTATAAA 59.247 40.000 0.00 0.00 34.49 1.40
322 323 5.986135 ACGCAATCTAGCAAGAGGTATAAAG 59.014 40.000 0.00 0.00 34.49 1.85
323 324 5.986135 CGCAATCTAGCAAGAGGTATAAAGT 59.014 40.000 0.00 0.00 34.49 2.66
324 325 7.145985 CGCAATCTAGCAAGAGGTATAAAGTA 58.854 38.462 0.00 0.00 34.49 2.24
325 326 7.115095 CGCAATCTAGCAAGAGGTATAAAGTAC 59.885 40.741 0.00 0.00 34.49 2.73
326 327 7.385478 GCAATCTAGCAAGAGGTATAAAGTACC 59.615 40.741 0.00 0.00 34.49 3.34
337 338 7.698506 AGGTATAAAGTACCTTTCCAAAAGC 57.301 36.000 0.98 0.00 45.06 3.51
338 339 7.467650 AGGTATAAAGTACCTTTCCAAAAGCT 58.532 34.615 0.98 0.00 45.06 3.74
339 340 8.608598 AGGTATAAAGTACCTTTCCAAAAGCTA 58.391 33.333 0.98 0.00 45.06 3.32
340 341 8.671921 GGTATAAAGTACCTTTCCAAAAGCTAC 58.328 37.037 0.00 0.00 35.21 3.58
341 342 9.445878 GTATAAAGTACCTTTCCAAAAGCTACT 57.554 33.333 0.00 2.88 35.21 2.57
342 343 8.935614 ATAAAGTACCTTTCCAAAAGCTACTT 57.064 30.769 11.63 11.63 35.21 2.24
343 344 7.655521 AAAGTACCTTTCCAAAAGCTACTTT 57.344 32.000 18.42 18.42 34.94 2.66
344 345 8.756486 AAAGTACCTTTCCAAAAGCTACTTTA 57.244 30.769 20.69 0.00 33.35 1.85
345 346 8.756486 AAGTACCTTTCCAAAAGCTACTTTAA 57.244 30.769 11.63 0.00 31.99 1.52
346 347 8.935614 AGTACCTTTCCAAAAGCTACTTTAAT 57.064 30.769 0.00 0.00 31.99 1.40
347 348 8.793592 AGTACCTTTCCAAAAGCTACTTTAATG 58.206 33.333 0.00 0.00 31.99 1.90
348 349 7.833285 ACCTTTCCAAAAGCTACTTTAATGA 57.167 32.000 0.00 0.00 31.99 2.57
349 350 8.245195 ACCTTTCCAAAAGCTACTTTAATGAA 57.755 30.769 0.00 0.00 31.99 2.57
350 351 8.700973 ACCTTTCCAAAAGCTACTTTAATGAAA 58.299 29.630 0.00 3.24 31.99 2.69
351 352 9.710900 CCTTTCCAAAAGCTACTTTAATGAAAT 57.289 29.630 0.00 0.00 31.99 2.17
354 355 9.912634 TTCCAAAAGCTACTTTAATGAAATCAG 57.087 29.630 0.00 0.00 31.99 2.90
355 356 8.522830 TCCAAAAGCTACTTTAATGAAATCAGG 58.477 33.333 0.00 0.00 31.99 3.86
356 357 7.761249 CCAAAAGCTACTTTAATGAAATCAGGG 59.239 37.037 0.00 0.00 31.99 4.45
357 358 8.522830 CAAAAGCTACTTTAATGAAATCAGGGA 58.477 33.333 0.00 0.00 31.99 4.20
358 359 8.650143 AAAGCTACTTTAATGAAATCAGGGAA 57.350 30.769 0.00 0.00 31.35 3.97
359 360 8.650143 AAGCTACTTTAATGAAATCAGGGAAA 57.350 30.769 0.00 0.00 0.00 3.13
360 361 8.829373 AGCTACTTTAATGAAATCAGGGAAAT 57.171 30.769 0.00 0.00 0.00 2.17
361 362 8.689972 AGCTACTTTAATGAAATCAGGGAAATG 58.310 33.333 0.00 0.00 0.00 2.32
362 363 8.470002 GCTACTTTAATGAAATCAGGGAAATGT 58.530 33.333 0.00 0.00 0.00 2.71
371 372 8.934023 TGAAATCAGGGAAATGTAACTAAAGT 57.066 30.769 0.00 0.00 0.00 2.66
372 373 8.792633 TGAAATCAGGGAAATGTAACTAAAGTG 58.207 33.333 0.00 0.00 0.00 3.16
373 374 8.706322 AAATCAGGGAAATGTAACTAAAGTGT 57.294 30.769 0.00 0.00 0.00 3.55
374 375 8.706322 AATCAGGGAAATGTAACTAAAGTGTT 57.294 30.769 0.00 0.00 0.00 3.32
375 376 7.504924 TCAGGGAAATGTAACTAAAGTGTTG 57.495 36.000 0.00 0.00 0.00 3.33
376 377 7.284074 TCAGGGAAATGTAACTAAAGTGTTGA 58.716 34.615 0.00 0.00 0.00 3.18
377 378 7.942341 TCAGGGAAATGTAACTAAAGTGTTGAT 59.058 33.333 0.00 0.00 0.00 2.57
378 379 8.576442 CAGGGAAATGTAACTAAAGTGTTGATT 58.424 33.333 0.00 0.00 0.00 2.57
381 382 9.394477 GGAAATGTAACTAAAGTGTTGATTCAC 57.606 33.333 0.00 0.00 38.46 3.18
424 425 5.917541 AACAACTATTCACCGTGTGTTAG 57.082 39.130 0.00 8.59 34.79 2.34
431 432 4.640789 TTCACCGTGTGTTAGCAAAATT 57.359 36.364 0.00 0.00 34.79 1.82
433 434 5.752892 TCACCGTGTGTTAGCAAAATTAA 57.247 34.783 0.00 0.00 34.79 1.40
434 435 5.512473 TCACCGTGTGTTAGCAAAATTAAC 58.488 37.500 0.00 0.00 34.79 2.01
437 438 5.918011 ACCGTGTGTTAGCAAAATTAACATG 59.082 36.000 0.00 0.00 41.50 3.21
443 444 5.698545 TGTTAGCAAAATTAACATGGTTGGC 59.301 36.000 0.00 0.00 36.41 4.52
449 450 3.598019 ATTAACATGGTTGGCTGCTTG 57.402 42.857 0.00 0.00 0.00 4.01
452 453 1.122227 ACATGGTTGGCTGCTTGTTT 58.878 45.000 0.00 0.00 0.00 2.83
458 459 2.204237 GTTGGCTGCTTGTTTTTCTGG 58.796 47.619 0.00 0.00 0.00 3.86
460 461 2.106566 TGGCTGCTTGTTTTTCTGGAA 58.893 42.857 0.00 0.00 0.00 3.53
461 462 2.499289 TGGCTGCTTGTTTTTCTGGAAA 59.501 40.909 0.00 0.00 0.00 3.13
462 463 3.126073 GGCTGCTTGTTTTTCTGGAAAG 58.874 45.455 0.00 0.00 0.00 2.62
463 464 2.541346 GCTGCTTGTTTTTCTGGAAAGC 59.459 45.455 0.00 0.00 42.78 3.51
464 465 3.126073 CTGCTTGTTTTTCTGGAAAGCC 58.874 45.455 3.49 0.00 41.99 4.35
466 467 2.742774 CTTGTTTTTCTGGAAAGCCGG 58.257 47.619 0.00 0.00 42.30 6.13
470 474 0.757188 TTTTCTGGAAAGCCGGCCAA 60.757 50.000 26.15 0.00 40.61 4.52
473 477 4.284550 TGGAAAGCCGGCCAAGCT 62.285 61.111 26.15 11.46 44.19 3.74
491 495 1.173043 CTTGCCGCCTGGTAAATCAA 58.827 50.000 0.00 0.00 39.53 2.57
494 498 1.102978 GCCGCCTGGTAAATCAACAT 58.897 50.000 0.00 0.00 37.67 2.71
496 500 2.290641 GCCGCCTGGTAAATCAACATAG 59.709 50.000 0.00 0.00 37.67 2.23
497 501 3.804036 CCGCCTGGTAAATCAACATAGA 58.196 45.455 0.00 0.00 0.00 1.98
501 505 5.625150 GCCTGGTAAATCAACATAGATCCT 58.375 41.667 0.00 0.00 0.00 3.24
503 507 6.547510 GCCTGGTAAATCAACATAGATCCTTT 59.452 38.462 0.00 0.00 0.00 3.11
603 610 8.931385 ATTCAATATTTCCATGTACAAGTTGC 57.069 30.769 0.00 0.00 0.00 4.17
606 613 8.028354 TCAATATTTCCATGTACAAGTTGCAAG 58.972 33.333 0.00 0.00 0.00 4.01
610 617 4.910195 TCCATGTACAAGTTGCAAGATCT 58.090 39.130 0.00 0.00 0.00 2.75
620 627 4.511527 AGTTGCAAGATCTCATAGTGTGG 58.488 43.478 0.00 0.00 0.00 4.17
621 628 4.019860 AGTTGCAAGATCTCATAGTGTGGT 60.020 41.667 0.00 0.00 0.00 4.16
622 629 3.865446 TGCAAGATCTCATAGTGTGGTG 58.135 45.455 0.00 0.00 0.00 4.17
623 630 3.201290 GCAAGATCTCATAGTGTGGTGG 58.799 50.000 0.00 0.00 0.00 4.61
624 631 3.369892 GCAAGATCTCATAGTGTGGTGGT 60.370 47.826 0.00 0.00 0.00 4.16
625 632 4.186926 CAAGATCTCATAGTGTGGTGGTG 58.813 47.826 0.00 0.00 0.00 4.17
626 633 3.713003 AGATCTCATAGTGTGGTGGTGA 58.287 45.455 0.00 0.00 0.00 4.02
627 634 4.293494 AGATCTCATAGTGTGGTGGTGAT 58.707 43.478 0.00 0.00 0.00 3.06
628 635 5.458595 AGATCTCATAGTGTGGTGGTGATA 58.541 41.667 0.00 0.00 0.00 2.15
629 636 5.303078 AGATCTCATAGTGTGGTGGTGATAC 59.697 44.000 0.00 0.00 0.00 2.24
630 637 3.704566 TCTCATAGTGTGGTGGTGATACC 59.295 47.826 0.00 0.00 41.24 2.73
631 638 3.706594 CTCATAGTGTGGTGGTGATACCT 59.293 47.826 0.00 0.00 41.43 3.08
634 641 2.621070 AGTGTGGTGGTGATACCTTCT 58.379 47.619 0.00 0.00 41.43 2.85
635 642 2.567615 AGTGTGGTGGTGATACCTTCTC 59.432 50.000 0.00 0.00 41.43 2.87
636 643 2.567615 GTGTGGTGGTGATACCTTCTCT 59.432 50.000 0.00 0.00 41.43 3.10
637 644 2.832129 TGTGGTGGTGATACCTTCTCTC 59.168 50.000 0.00 0.00 41.43 3.20
638 645 2.168728 GTGGTGGTGATACCTTCTCTCC 59.831 54.545 0.00 0.00 41.43 3.71
679 686 2.130193 CTCCTCCCATCCCATGAGAAA 58.870 52.381 0.00 0.00 0.00 2.52
680 687 2.106166 CTCCTCCCATCCCATGAGAAAG 59.894 54.545 0.00 0.00 0.00 2.62
681 688 2.130193 CCTCCCATCCCATGAGAAAGA 58.870 52.381 0.00 0.00 0.00 2.52
682 689 2.511218 CCTCCCATCCCATGAGAAAGAA 59.489 50.000 0.00 0.00 0.00 2.52
733 740 2.130426 TCTCTCTCCATCCAGCCGC 61.130 63.158 0.00 0.00 0.00 6.53
765 780 2.955660 AGAGGCTCACTATCACTAGCAC 59.044 50.000 18.26 0.00 36.68 4.40
772 787 4.781934 TCACTATCACTAGCACTAGAGCA 58.218 43.478 14.80 0.06 36.97 4.26
775 790 4.578516 ACTATCACTAGCACTAGAGCACAG 59.421 45.833 14.80 12.48 36.97 3.66
782 797 2.093764 AGCACTAGAGCACAGATCCAAC 60.094 50.000 14.80 0.00 36.85 3.77
825 840 2.103263 ACCGAATCCAAGCTGACTATCC 59.897 50.000 0.00 0.00 0.00 2.59
901 962 2.278857 CTTCCAGATCGACGGCCG 60.279 66.667 26.86 26.86 40.25 6.13
1563 2115 2.325857 CTCATTAGCGCTTGCGGC 59.674 61.111 18.68 8.93 45.69 6.53
1622 2174 0.805322 GATCTGCACTCCACGCTCAG 60.805 60.000 0.00 0.00 0.00 3.35
1683 2235 2.658268 GGCCTTTTGTGCACACGC 60.658 61.111 21.56 17.78 39.24 5.34
2095 2657 3.251571 GTGCGTCTTTTCGGTATCTTCT 58.748 45.455 0.00 0.00 0.00 2.85
2133 2695 4.081198 AGCTGGACTCTGTTTATCCTTGAG 60.081 45.833 0.00 0.00 33.34 3.02
2217 2813 5.104982 TCCACATCTTAGCATGTACATGACA 60.105 40.000 34.65 20.04 43.97 3.58
2323 2920 8.656849 CACTCACCAACTTATCACAAATACTAC 58.343 37.037 0.00 0.00 0.00 2.73
2582 3327 4.776435 TCCCAGAAGCATATTCATGTGA 57.224 40.909 0.00 0.00 34.40 3.58
2587 3339 6.148976 CCCAGAAGCATATTCATGTGACATAG 59.851 42.308 0.00 0.00 34.40 2.23
2640 3401 9.016438 TGAAAAGTATATAGGGGTGTCAAAAAC 57.984 33.333 0.00 0.00 0.00 2.43
2641 3402 8.943594 AAAAGTATATAGGGGTGTCAAAAACA 57.056 30.769 0.00 0.00 34.78 2.83
2749 3571 2.048127 AAGACGCCCGAGAACAGC 60.048 61.111 0.00 0.00 0.00 4.40
2799 3621 1.923356 TCCAAGGATTTGAAGCACCC 58.077 50.000 0.00 0.00 36.36 4.61
2813 3635 3.396951 CACCCGAACTTGAAGGTGT 57.603 52.632 0.00 0.00 43.91 4.16
2832 3654 2.892425 GCAGATCTTCGGGTGCGG 60.892 66.667 0.00 0.00 0.00 5.69
2899 3721 3.444029 AGCTGTGGGGCTTTTGATAATT 58.556 40.909 0.00 0.00 39.86 1.40
2901 3723 3.734902 GCTGTGGGGCTTTTGATAATTCG 60.735 47.826 0.00 0.00 0.00 3.34
2940 3762 1.645455 GCACATACTGCGATGCTGG 59.355 57.895 0.00 0.00 35.72 4.85
3065 3899 4.777896 GGATATGGTCAGGGAATGCTAGTA 59.222 45.833 0.00 0.00 0.00 1.82
3143 3977 6.749118 GCAGCCAGTTGTAATTCTAATTTCTG 59.251 38.462 0.00 0.00 0.00 3.02
3163 3997 1.182667 GTTATTGGTGGCCTGGGAAC 58.817 55.000 3.32 0.00 0.00 3.62
3290 4258 1.751924 GAGGCGAGGTTGACTGTAGAT 59.248 52.381 0.00 0.00 0.00 1.98
3327 4295 4.190772 CACCCTTTTTGCTTTGTGTTGAT 58.809 39.130 0.00 0.00 0.00 2.57
3331 4299 7.012232 CACCCTTTTTGCTTTGTGTTGATAAAT 59.988 33.333 0.00 0.00 0.00 1.40
3362 4332 7.490657 ACTCATGGAGGTATACTGTTTTGTA 57.509 36.000 2.25 0.00 33.35 2.41
3371 4617 7.970102 AGGTATACTGTTTTGTACTTGAAGGA 58.030 34.615 2.25 0.00 0.00 3.36
3413 4830 4.403734 TGATTCCAAAACCAAGGTCTACC 58.596 43.478 0.00 0.00 0.00 3.18
3520 4960 0.665298 GCCCAATAGCAAGCTACTGC 59.335 55.000 3.55 1.95 42.97 4.40
3527 4967 1.667830 GCAAGCTACTGCGGTGACA 60.668 57.895 8.92 0.00 45.42 3.58
3529 4969 1.372997 AAGCTACTGCGGTGACACG 60.373 57.895 8.92 0.00 45.42 4.49
3576 5458 3.439857 TCAGATTCCCAAGGTTTCAGG 57.560 47.619 0.00 0.00 0.00 3.86
3577 5459 2.716424 TCAGATTCCCAAGGTTTCAGGT 59.284 45.455 0.00 0.00 0.00 4.00
3617 5499 9.672673 TTTACCTCTTTCTTCTGATTAAGATGG 57.327 33.333 0.00 0.00 35.48 3.51
3624 5506 7.724490 TTCTTCTGATTAAGATGGTCAGAGA 57.276 36.000 5.99 4.44 46.27 3.10
3645 5712 5.254115 AGAAAAACTAGGCCAGACCATAAC 58.746 41.667 5.01 0.00 43.14 1.89
3655 5722 3.002656 GCCAGACCATAACAACATGATCG 59.997 47.826 0.00 0.00 0.00 3.69
3658 5725 5.111989 CAGACCATAACAACATGATCGACT 58.888 41.667 0.00 0.00 0.00 4.18
3663 5730 7.272244 ACCATAACAACATGATCGACTTATCA 58.728 34.615 0.00 0.00 40.07 2.15
3787 5858 8.471609 AGAAACTACTTAAGGAAGACTAGATGC 58.528 37.037 7.53 0.00 36.45 3.91
3788 5859 7.719871 AACTACTTAAGGAAGACTAGATGCA 57.280 36.000 7.53 0.00 36.45 3.96
3789 5860 7.906199 ACTACTTAAGGAAGACTAGATGCAT 57.094 36.000 7.53 0.00 36.45 3.96
3790 5861 7.721402 ACTACTTAAGGAAGACTAGATGCATG 58.279 38.462 2.46 0.00 36.45 4.06
3805 5876 1.887854 TGCATGAGGTGACCAAACATG 59.112 47.619 22.40 22.40 40.50 3.21
3806 5877 1.203052 GCATGAGGTGACCAAACATGG 59.797 52.381 25.32 14.45 38.76 3.66
3838 5909 8.837788 AAATCTCCAAATTAAGCAAGGAAAAG 57.162 30.769 0.00 0.00 0.00 2.27
3839 5910 5.783111 TCTCCAAATTAAGCAAGGAAAAGC 58.217 37.500 0.00 0.00 0.00 3.51
3841 5912 3.123453 CCAAATTAAGCAAGGAAAAGCGC 59.877 43.478 0.00 0.00 35.48 5.92
3842 5913 3.942130 AATTAAGCAAGGAAAAGCGCT 57.058 38.095 2.64 2.64 35.90 5.92
3843 5914 2.989422 TTAAGCAAGGAAAAGCGCTC 57.011 45.000 12.06 0.00 32.37 5.03
3844 5915 2.185004 TAAGCAAGGAAAAGCGCTCT 57.815 45.000 12.06 0.00 32.37 4.09
3845 5916 0.595095 AAGCAAGGAAAAGCGCTCTG 59.405 50.000 12.06 2.73 32.37 3.35
3854 8389 0.106708 AAAGCGCTCTGACAGGTCAA 59.893 50.000 12.06 0.00 39.39 3.18
3907 8442 2.573462 TCTGTGAGGGATTTCTCCAAGG 59.427 50.000 0.00 0.00 44.08 3.61
3916 8451 4.013050 GGATTTCTCCAAGGTCTTCCAAG 58.987 47.826 0.00 0.00 41.64 3.61
3922 8457 2.040278 TCCAAGGTCTTCCAAGATGGTG 59.960 50.000 7.14 0.44 39.03 4.17
3923 8458 2.040278 CCAAGGTCTTCCAAGATGGTGA 59.960 50.000 0.00 0.00 39.03 4.02
3924 8459 3.341823 CAAGGTCTTCCAAGATGGTGAG 58.658 50.000 0.00 0.00 39.03 3.51
3925 8460 2.907892 AGGTCTTCCAAGATGGTGAGA 58.092 47.619 0.00 0.00 39.03 3.27
3926 8461 3.251484 AGGTCTTCCAAGATGGTGAGAA 58.749 45.455 6.75 0.00 39.03 2.87
3927 8462 3.262915 AGGTCTTCCAAGATGGTGAGAAG 59.737 47.826 6.75 0.00 39.03 2.85
3928 8463 3.008485 GGTCTTCCAAGATGGTGAGAAGT 59.992 47.826 0.00 0.00 39.03 3.01
3939 8474 3.808728 TGGTGAGAAGTCAAACCTGAAG 58.191 45.455 0.00 0.00 33.27 3.02
3941 8476 4.080582 TGGTGAGAAGTCAAACCTGAAGAA 60.081 41.667 0.00 0.00 33.27 2.52
3947 8482 7.773224 TGAGAAGTCAAACCTGAAGAAATGTTA 59.227 33.333 0.00 0.00 31.88 2.41
3949 8484 7.556275 AGAAGTCAAACCTGAAGAAATGTTACA 59.444 33.333 0.00 0.00 31.88 2.41
3950 8485 7.264373 AGTCAAACCTGAAGAAATGTTACAG 57.736 36.000 0.00 0.00 31.88 2.74
3956 8491 6.476378 ACCTGAAGAAATGTTACAGTGCTAT 58.524 36.000 0.00 0.00 0.00 2.97
3961 8496 9.677567 TGAAGAAATGTTACAGTGCTATTTTTC 57.322 29.630 0.00 0.00 0.00 2.29
3965 8500 9.463443 GAAATGTTACAGTGCTATTTTTCAAGT 57.537 29.630 0.00 0.00 0.00 3.16
3967 8502 9.463443 AATGTTACAGTGCTATTTTTCAAGTTC 57.537 29.630 0.00 0.00 0.00 3.01
3981 8516 3.861840 TCAAGTTCCGATGAGATCAACC 58.138 45.455 0.00 0.00 0.00 3.77
3989 8524 3.200483 CGATGAGATCAACCATGCAAGA 58.800 45.455 0.00 0.00 0.00 3.02
3990 8525 3.813724 CGATGAGATCAACCATGCAAGAT 59.186 43.478 0.00 0.00 0.00 2.40
3991 8526 4.275196 CGATGAGATCAACCATGCAAGATT 59.725 41.667 0.00 0.00 0.00 2.40
3992 8527 5.220989 CGATGAGATCAACCATGCAAGATTT 60.221 40.000 0.00 0.00 0.00 2.17
3993 8528 5.319140 TGAGATCAACCATGCAAGATTTG 57.681 39.130 0.00 0.00 0.00 2.32
3994 8529 5.011586 TGAGATCAACCATGCAAGATTTGA 58.988 37.500 7.96 7.96 0.00 2.69
3995 8530 5.124936 TGAGATCAACCATGCAAGATTTGAG 59.875 40.000 10.41 0.00 30.07 3.02
3996 8531 5.258841 AGATCAACCATGCAAGATTTGAGA 58.741 37.500 10.41 0.00 30.07 3.27
3997 8532 5.357314 AGATCAACCATGCAAGATTTGAGAG 59.643 40.000 10.41 0.00 30.07 3.20
3998 8533 4.654915 TCAACCATGCAAGATTTGAGAGA 58.345 39.130 0.00 0.00 0.00 3.10
3999 8534 4.698780 TCAACCATGCAAGATTTGAGAGAG 59.301 41.667 0.00 0.00 0.00 3.20
4000 8535 4.564782 ACCATGCAAGATTTGAGAGAGA 57.435 40.909 0.00 0.00 0.00 3.10
4001 8536 4.914983 ACCATGCAAGATTTGAGAGAGAA 58.085 39.130 0.00 0.00 0.00 2.87
4002 8537 4.699257 ACCATGCAAGATTTGAGAGAGAAC 59.301 41.667 0.00 0.00 0.00 3.01
4003 8538 4.698780 CCATGCAAGATTTGAGAGAGAACA 59.301 41.667 0.00 0.00 0.00 3.18
4004 8539 5.391736 CCATGCAAGATTTGAGAGAGAACAC 60.392 44.000 0.00 0.00 0.00 3.32
4005 8540 4.067896 TGCAAGATTTGAGAGAGAACACC 58.932 43.478 0.00 0.00 0.00 4.16
4006 8541 3.438434 GCAAGATTTGAGAGAGAACACCC 59.562 47.826 0.00 0.00 0.00 4.61
4007 8542 3.601443 AGATTTGAGAGAGAACACCCG 57.399 47.619 0.00 0.00 0.00 5.28
4008 8543 3.165875 AGATTTGAGAGAGAACACCCGA 58.834 45.455 0.00 0.00 0.00 5.14
4009 8544 3.578716 AGATTTGAGAGAGAACACCCGAA 59.421 43.478 0.00 0.00 0.00 4.30
4010 8545 3.386768 TTTGAGAGAGAACACCCGAAG 57.613 47.619 0.00 0.00 0.00 3.79
4011 8546 0.603569 TGAGAGAGAACACCCGAAGC 59.396 55.000 0.00 0.00 0.00 3.86
4012 8547 0.603569 GAGAGAGAACACCCGAAGCA 59.396 55.000 0.00 0.00 0.00 3.91
4013 8548 1.205893 GAGAGAGAACACCCGAAGCAT 59.794 52.381 0.00 0.00 0.00 3.79
4014 8549 1.625818 AGAGAGAACACCCGAAGCATT 59.374 47.619 0.00 0.00 0.00 3.56
4015 8550 2.039084 AGAGAGAACACCCGAAGCATTT 59.961 45.455 0.00 0.00 0.00 2.32
4016 8551 2.814336 GAGAGAACACCCGAAGCATTTT 59.186 45.455 0.00 0.00 0.00 1.82
4017 8552 2.814336 AGAGAACACCCGAAGCATTTTC 59.186 45.455 0.00 0.00 0.00 2.29
4018 8553 2.814336 GAGAACACCCGAAGCATTTTCT 59.186 45.455 0.00 0.00 0.00 2.52
4019 8554 4.000988 GAGAACACCCGAAGCATTTTCTA 58.999 43.478 0.00 0.00 0.00 2.10
4020 8555 4.003648 AGAACACCCGAAGCATTTTCTAG 58.996 43.478 0.00 0.00 0.00 2.43
4021 8556 3.695830 ACACCCGAAGCATTTTCTAGA 57.304 42.857 0.00 0.00 0.00 2.43
4022 8557 3.335579 ACACCCGAAGCATTTTCTAGAC 58.664 45.455 0.00 0.00 0.00 2.59
4023 8558 3.008049 ACACCCGAAGCATTTTCTAGACT 59.992 43.478 0.00 0.00 0.00 3.24
4024 8559 4.003648 CACCCGAAGCATTTTCTAGACTT 58.996 43.478 0.00 0.00 0.00 3.01
4025 8560 4.455877 CACCCGAAGCATTTTCTAGACTTT 59.544 41.667 0.00 0.00 0.00 2.66
4026 8561 4.695928 ACCCGAAGCATTTTCTAGACTTTC 59.304 41.667 0.00 0.00 0.00 2.62
4027 8562 4.695455 CCCGAAGCATTTTCTAGACTTTCA 59.305 41.667 0.00 0.00 0.00 2.69
4028 8563 5.390991 CCCGAAGCATTTTCTAGACTTTCAC 60.391 44.000 0.00 0.00 0.00 3.18
4029 8564 5.390991 CCGAAGCATTTTCTAGACTTTCACC 60.391 44.000 0.00 0.00 0.00 4.02
4030 8565 5.390991 CGAAGCATTTTCTAGACTTTCACCC 60.391 44.000 0.00 0.00 0.00 4.61
4031 8566 4.985538 AGCATTTTCTAGACTTTCACCCA 58.014 39.130 0.00 0.00 0.00 4.51
4032 8567 5.385198 AGCATTTTCTAGACTTTCACCCAA 58.615 37.500 0.00 0.00 0.00 4.12
4033 8568 5.833131 AGCATTTTCTAGACTTTCACCCAAA 59.167 36.000 0.00 0.00 0.00 3.28
4034 8569 6.323739 AGCATTTTCTAGACTTTCACCCAAAA 59.676 34.615 0.00 0.00 0.00 2.44
4035 8570 6.983890 GCATTTTCTAGACTTTCACCCAAAAA 59.016 34.615 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.760660 CAACTTTATACTAGCTTTAGTGCAAAG 57.239 33.333 15.99 15.99 45.55 2.77
25 26 9.973661 TCCTTCCATTTCAAAATATTAGACTCA 57.026 29.630 0.00 0.00 0.00 3.41
27 28 9.981460 ACTCCTTCCATTTCAAAATATTAGACT 57.019 29.630 0.00 0.00 0.00 3.24
33 34 9.479549 ACACATACTCCTTCCATTTCAAAATAT 57.520 29.630 0.00 0.00 0.00 1.28
34 35 8.877864 ACACATACTCCTTCCATTTCAAAATA 57.122 30.769 0.00 0.00 0.00 1.40
35 36 7.781324 ACACATACTCCTTCCATTTCAAAAT 57.219 32.000 0.00 0.00 0.00 1.82
36 37 7.595819 AACACATACTCCTTCCATTTCAAAA 57.404 32.000 0.00 0.00 0.00 2.44
37 38 8.698973 TTAACACATACTCCTTCCATTTCAAA 57.301 30.769 0.00 0.00 0.00 2.69
38 39 8.877864 ATTAACACATACTCCTTCCATTTCAA 57.122 30.769 0.00 0.00 0.00 2.69
39 40 7.556275 GGATTAACACATACTCCTTCCATTTCA 59.444 37.037 0.00 0.00 32.06 2.69
40 41 7.556275 TGGATTAACACATACTCCTTCCATTTC 59.444 37.037 0.00 0.00 35.04 2.17
41 42 7.410174 TGGATTAACACATACTCCTTCCATTT 58.590 34.615 0.00 0.00 35.04 2.32
42 43 6.969043 TGGATTAACACATACTCCTTCCATT 58.031 36.000 0.00 0.00 35.04 3.16
43 44 6.575244 TGGATTAACACATACTCCTTCCAT 57.425 37.500 0.00 0.00 35.04 3.41
44 45 6.409234 GGATGGATTAACACATACTCCTTCCA 60.409 42.308 14.59 4.43 46.49 3.53
45 46 5.998363 GGATGGATTAACACATACTCCTTCC 59.002 44.000 7.72 7.72 43.92 3.46
46 47 6.831976 AGGATGGATTAACACATACTCCTTC 58.168 40.000 1.07 0.00 32.93 3.46
47 48 6.831664 AGGATGGATTAACACATACTCCTT 57.168 37.500 1.07 0.00 32.93 3.36
48 49 6.426646 GAGGATGGATTAACACATACTCCT 57.573 41.667 17.09 10.29 45.29 3.69
51 52 9.125026 GAATTTGAGGATGGATTAACACATACT 57.875 33.333 5.80 5.80 40.88 2.12
52 53 8.902806 TGAATTTGAGGATGGATTAACACATAC 58.097 33.333 0.00 0.00 0.00 2.39
53 54 9.123902 CTGAATTTGAGGATGGATTAACACATA 57.876 33.333 0.00 0.00 0.00 2.29
54 55 7.616935 ACTGAATTTGAGGATGGATTAACACAT 59.383 33.333 0.00 0.00 0.00 3.21
55 56 6.947733 ACTGAATTTGAGGATGGATTAACACA 59.052 34.615 0.00 0.00 0.00 3.72
56 57 7.094205 ACACTGAATTTGAGGATGGATTAACAC 60.094 37.037 0.00 0.00 0.00 3.32
57 58 6.947733 ACACTGAATTTGAGGATGGATTAACA 59.052 34.615 0.00 0.00 0.00 2.41
58 59 7.396540 ACACTGAATTTGAGGATGGATTAAC 57.603 36.000 0.00 0.00 0.00 2.01
59 60 8.328758 AGTACACTGAATTTGAGGATGGATTAA 58.671 33.333 0.00 0.00 0.00 1.40
60 61 7.770433 CAGTACACTGAATTTGAGGATGGATTA 59.230 37.037 3.14 0.00 46.59 1.75
61 62 6.600822 CAGTACACTGAATTTGAGGATGGATT 59.399 38.462 3.14 0.00 46.59 3.01
62 63 6.118170 CAGTACACTGAATTTGAGGATGGAT 58.882 40.000 3.14 0.00 46.59 3.41
63 64 5.013079 ACAGTACACTGAATTTGAGGATGGA 59.987 40.000 16.05 0.00 46.59 3.41
64 65 5.248640 ACAGTACACTGAATTTGAGGATGG 58.751 41.667 16.05 0.00 46.59 3.51
65 66 6.169094 AGACAGTACACTGAATTTGAGGATG 58.831 40.000 16.05 0.00 46.59 3.51
66 67 6.365970 AGACAGTACACTGAATTTGAGGAT 57.634 37.500 16.05 0.00 46.59 3.24
67 68 5.808366 AGACAGTACACTGAATTTGAGGA 57.192 39.130 16.05 0.00 46.59 3.71
68 69 9.254133 CATATAGACAGTACACTGAATTTGAGG 57.746 37.037 16.05 0.00 46.59 3.86
122 123 9.736023 GAAAAGAGAACACAGACAATTACAAAT 57.264 29.630 0.00 0.00 0.00 2.32
123 124 8.956426 AGAAAAGAGAACACAGACAATTACAAA 58.044 29.630 0.00 0.00 0.00 2.83
124 125 8.506168 AGAAAAGAGAACACAGACAATTACAA 57.494 30.769 0.00 0.00 0.00 2.41
125 126 8.506168 AAGAAAAGAGAACACAGACAATTACA 57.494 30.769 0.00 0.00 0.00 2.41
126 127 7.794349 CGAAGAAAAGAGAACACAGACAATTAC 59.206 37.037 0.00 0.00 0.00 1.89
127 128 7.494625 ACGAAGAAAAGAGAACACAGACAATTA 59.505 33.333 0.00 0.00 0.00 1.40
128 129 6.316390 ACGAAGAAAAGAGAACACAGACAATT 59.684 34.615 0.00 0.00 0.00 2.32
129 130 5.817816 ACGAAGAAAAGAGAACACAGACAAT 59.182 36.000 0.00 0.00 0.00 2.71
130 131 5.175859 ACGAAGAAAAGAGAACACAGACAA 58.824 37.500 0.00 0.00 0.00 3.18
131 132 4.755411 ACGAAGAAAAGAGAACACAGACA 58.245 39.130 0.00 0.00 0.00 3.41
132 133 6.823678 TTACGAAGAAAAGAGAACACAGAC 57.176 37.500 0.00 0.00 0.00 3.51
133 134 8.433421 AAATTACGAAGAAAAGAGAACACAGA 57.567 30.769 0.00 0.00 0.00 3.41
136 137 9.595357 CCTAAAATTACGAAGAAAAGAGAACAC 57.405 33.333 0.00 0.00 0.00 3.32
137 138 9.550406 TCCTAAAATTACGAAGAAAAGAGAACA 57.450 29.630 0.00 0.00 0.00 3.18
160 161 9.331282 GAATGTTGTAAAGCAGACTATTATCCT 57.669 33.333 0.00 0.00 0.00 3.24
161 162 9.331282 AGAATGTTGTAAAGCAGACTATTATCC 57.669 33.333 0.00 0.00 0.00 2.59
167 168 9.772973 TCTTAAAGAATGTTGTAAAGCAGACTA 57.227 29.630 0.00 0.00 0.00 2.59
168 169 8.677148 TCTTAAAGAATGTTGTAAAGCAGACT 57.323 30.769 0.00 0.00 0.00 3.24
169 170 9.387123 CTTCTTAAAGAATGTTGTAAAGCAGAC 57.613 33.333 0.00 0.00 33.13 3.51
170 171 8.076178 GCTTCTTAAAGAATGTTGTAAAGCAGA 58.924 33.333 0.00 0.00 36.35 4.26
171 172 7.327032 GGCTTCTTAAAGAATGTTGTAAAGCAG 59.673 37.037 0.00 0.00 37.66 4.24
172 173 7.014230 AGGCTTCTTAAAGAATGTTGTAAAGCA 59.986 33.333 0.00 0.00 37.66 3.91
173 174 7.371159 AGGCTTCTTAAAGAATGTTGTAAAGC 58.629 34.615 0.00 0.00 33.13 3.51
174 175 9.185192 CAAGGCTTCTTAAAGAATGTTGTAAAG 57.815 33.333 0.00 0.00 33.13 1.85
175 176 7.651704 GCAAGGCTTCTTAAAGAATGTTGTAAA 59.348 33.333 0.00 0.00 33.13 2.01
176 177 7.014230 AGCAAGGCTTCTTAAAGAATGTTGTAA 59.986 33.333 0.00 0.00 33.89 2.41
177 178 6.490040 AGCAAGGCTTCTTAAAGAATGTTGTA 59.510 34.615 0.00 0.00 33.89 2.41
178 179 5.302823 AGCAAGGCTTCTTAAAGAATGTTGT 59.697 36.000 0.00 0.00 33.89 3.32
179 180 5.632347 CAGCAAGGCTTCTTAAAGAATGTTG 59.368 40.000 0.00 0.00 36.40 3.33
180 181 5.536161 TCAGCAAGGCTTCTTAAAGAATGTT 59.464 36.000 0.00 0.00 36.40 2.71
181 182 5.072741 TCAGCAAGGCTTCTTAAAGAATGT 58.927 37.500 0.00 0.00 36.40 2.71
182 183 5.633830 TCAGCAAGGCTTCTTAAAGAATG 57.366 39.130 0.00 0.00 36.40 2.67
183 184 6.655078 TTTCAGCAAGGCTTCTTAAAGAAT 57.345 33.333 0.00 0.00 36.40 2.40
184 185 6.463995 TTTTCAGCAAGGCTTCTTAAAGAA 57.536 33.333 0.00 0.00 36.40 2.52
185 186 6.463995 TTTTTCAGCAAGGCTTCTTAAAGA 57.536 33.333 0.00 0.00 36.40 2.52
206 207 3.065648 AGACACACGTAAACGCCATTTTT 59.934 39.130 1.74 0.00 44.43 1.94
207 208 2.614983 AGACACACGTAAACGCCATTTT 59.385 40.909 1.74 0.00 44.43 1.82
208 209 2.215196 AGACACACGTAAACGCCATTT 58.785 42.857 1.74 0.00 44.43 2.32
209 210 1.873698 AGACACACGTAAACGCCATT 58.126 45.000 1.74 0.00 44.43 3.16
210 211 1.873698 AAGACACACGTAAACGCCAT 58.126 45.000 1.74 0.00 44.43 4.40
211 212 2.126467 GTAAGACACACGTAAACGCCA 58.874 47.619 1.74 0.00 44.43 5.69
212 213 1.123038 CGTAAGACACACGTAAACGCC 59.877 52.381 1.74 0.00 41.71 5.68
213 214 2.043411 TCGTAAGACACACGTAAACGC 58.957 47.619 1.74 0.00 45.01 4.84
227 228 1.129058 ATGGGCCCCTAAGTCGTAAG 58.871 55.000 22.27 0.00 0.00 2.34
228 229 2.475339 TATGGGCCCCTAAGTCGTAA 57.525 50.000 22.27 0.00 0.00 3.18
229 230 2.532843 GATATGGGCCCCTAAGTCGTA 58.467 52.381 22.27 0.00 0.00 3.43
230 231 1.349067 GATATGGGCCCCTAAGTCGT 58.651 55.000 22.27 0.00 0.00 4.34
231 232 0.246635 CGATATGGGCCCCTAAGTCG 59.753 60.000 22.27 16.87 0.00 4.18
232 233 1.275573 GACGATATGGGCCCCTAAGTC 59.724 57.143 22.27 21.69 0.00 3.01
233 234 1.349067 GACGATATGGGCCCCTAAGT 58.651 55.000 22.27 17.82 0.00 2.24
234 235 0.246635 CGACGATATGGGCCCCTAAG 59.753 60.000 22.27 14.67 0.00 2.18
235 236 0.178955 TCGACGATATGGGCCCCTAA 60.179 55.000 22.27 4.47 0.00 2.69
236 237 0.611062 CTCGACGATATGGGCCCCTA 60.611 60.000 22.27 15.47 0.00 3.53
237 238 1.908793 CTCGACGATATGGGCCCCT 60.909 63.158 22.27 13.22 0.00 4.79
238 239 2.657237 CTCGACGATATGGGCCCC 59.343 66.667 22.27 1.60 0.00 5.80
239 240 2.156051 GACCTCGACGATATGGGCCC 62.156 65.000 17.59 17.59 0.00 5.80
240 241 1.289380 GACCTCGACGATATGGGCC 59.711 63.158 0.00 0.00 0.00 5.80
241 242 1.081376 CGACCTCGACGATATGGGC 60.081 63.158 0.00 0.00 43.02 5.36
242 243 1.081376 GCGACCTCGACGATATGGG 60.081 63.158 0.00 0.00 43.02 4.00
243 244 1.081376 GGCGACCTCGACGATATGG 60.081 63.158 0.00 0.00 43.02 2.74
244 245 4.535425 GGCGACCTCGACGATATG 57.465 61.111 0.00 0.00 43.02 1.78
260 261 2.302587 TTGTTTTGGAAGGCCCTAGG 57.697 50.000 0.06 0.06 35.38 3.02
261 262 2.562738 CCTTTGTTTTGGAAGGCCCTAG 59.437 50.000 0.00 0.00 36.34 3.02
262 263 2.604139 CCTTTGTTTTGGAAGGCCCTA 58.396 47.619 0.00 0.00 36.34 3.53
263 264 1.423584 CCTTTGTTTTGGAAGGCCCT 58.576 50.000 0.00 0.00 36.34 5.19
264 265 0.396435 CCCTTTGTTTTGGAAGGCCC 59.604 55.000 0.00 0.00 40.87 5.80
265 266 0.250295 GCCCTTTGTTTTGGAAGGCC 60.250 55.000 0.00 0.00 40.87 5.19
266 267 0.250295 GGCCCTTTGTTTTGGAAGGC 60.250 55.000 0.00 0.00 40.87 4.35
267 268 0.033366 CGGCCCTTTGTTTTGGAAGG 59.967 55.000 0.00 0.00 41.67 3.46
268 269 0.033366 CCGGCCCTTTGTTTTGGAAG 59.967 55.000 0.00 0.00 0.00 3.46
269 270 2.034048 GCCGGCCCTTTGTTTTGGAA 62.034 55.000 18.11 0.00 0.00 3.53
270 271 2.503382 GCCGGCCCTTTGTTTTGGA 61.503 57.895 18.11 0.00 0.00 3.53
271 272 2.030412 GCCGGCCCTTTGTTTTGG 59.970 61.111 18.11 0.00 0.00 3.28
272 273 2.030412 GGCCGGCCCTTTGTTTTG 59.970 61.111 36.64 0.00 0.00 2.44
286 287 3.225069 ATTGCGTGCAAACAGGGCC 62.225 57.895 11.75 0.00 39.55 5.80
287 288 1.734117 GATTGCGTGCAAACAGGGC 60.734 57.895 11.75 0.00 39.55 5.19
288 289 1.131126 CTAGATTGCGTGCAAACAGGG 59.869 52.381 11.75 0.24 39.55 4.45
289 290 1.466360 GCTAGATTGCGTGCAAACAGG 60.466 52.381 11.75 6.97 39.55 4.00
290 291 1.197492 TGCTAGATTGCGTGCAAACAG 59.803 47.619 11.75 9.65 39.55 3.16
291 292 1.233919 TGCTAGATTGCGTGCAAACA 58.766 45.000 11.75 2.92 39.55 2.83
292 293 2.095768 TCTTGCTAGATTGCGTGCAAAC 60.096 45.455 11.75 9.06 43.45 2.93
293 294 2.150390 TCTTGCTAGATTGCGTGCAAA 58.850 42.857 11.75 0.00 43.45 3.68
294 295 1.733912 CTCTTGCTAGATTGCGTGCAA 59.266 47.619 10.02 10.02 42.16 4.08
295 296 1.362768 CTCTTGCTAGATTGCGTGCA 58.637 50.000 0.00 0.00 35.36 4.57
296 297 0.654683 CCTCTTGCTAGATTGCGTGC 59.345 55.000 0.00 0.00 35.36 5.34
297 298 2.015736 ACCTCTTGCTAGATTGCGTG 57.984 50.000 0.00 0.00 35.36 5.34
298 299 5.531122 TTATACCTCTTGCTAGATTGCGT 57.469 39.130 0.00 0.00 35.36 5.24
299 300 5.986135 ACTTTATACCTCTTGCTAGATTGCG 59.014 40.000 0.00 0.00 35.36 4.85
300 301 7.385478 GGTACTTTATACCTCTTGCTAGATTGC 59.615 40.741 0.00 0.00 34.82 3.56
301 302 8.643324 AGGTACTTTATACCTCTTGCTAGATTG 58.357 37.037 0.00 0.00 44.10 2.67
302 303 8.785184 AGGTACTTTATACCTCTTGCTAGATT 57.215 34.615 0.00 0.00 44.10 2.40
322 323 8.789762 TCATTAAAGTAGCTTTTGGAAAGGTAC 58.210 33.333 24.36 24.36 46.14 3.34
323 324 8.927675 TCATTAAAGTAGCTTTTGGAAAGGTA 57.072 30.769 7.92 7.92 35.21 3.08
324 325 7.833285 TCATTAAAGTAGCTTTTGGAAAGGT 57.167 32.000 9.67 9.67 35.21 3.50
325 326 9.710900 ATTTCATTAAAGTAGCTTTTGGAAAGG 57.289 29.630 0.00 0.00 35.21 3.11
328 329 9.912634 CTGATTTCATTAAAGTAGCTTTTGGAA 57.087 29.630 0.00 0.00 35.21 3.53
329 330 8.522830 CCTGATTTCATTAAAGTAGCTTTTGGA 58.477 33.333 0.00 0.00 35.21 3.53
330 331 7.761249 CCCTGATTTCATTAAAGTAGCTTTTGG 59.239 37.037 0.00 0.00 35.21 3.28
331 332 8.522830 TCCCTGATTTCATTAAAGTAGCTTTTG 58.477 33.333 0.00 0.00 35.21 2.44
332 333 8.650143 TCCCTGATTTCATTAAAGTAGCTTTT 57.350 30.769 0.00 0.00 35.21 2.27
333 334 8.650143 TTCCCTGATTTCATTAAAGTAGCTTT 57.350 30.769 0.00 0.00 37.46 3.51
334 335 8.650143 TTTCCCTGATTTCATTAAAGTAGCTT 57.350 30.769 0.00 0.00 0.00 3.74
335 336 8.689972 CATTTCCCTGATTTCATTAAAGTAGCT 58.310 33.333 0.00 0.00 0.00 3.32
336 337 8.470002 ACATTTCCCTGATTTCATTAAAGTAGC 58.530 33.333 0.00 0.00 0.00 3.58
345 346 9.533831 ACTTTAGTTACATTTCCCTGATTTCAT 57.466 29.630 0.00 0.00 0.00 2.57
346 347 8.792633 CACTTTAGTTACATTTCCCTGATTTCA 58.207 33.333 0.00 0.00 0.00 2.69
347 348 8.793592 ACACTTTAGTTACATTTCCCTGATTTC 58.206 33.333 0.00 0.00 0.00 2.17
348 349 8.706322 ACACTTTAGTTACATTTCCCTGATTT 57.294 30.769 0.00 0.00 0.00 2.17
349 350 8.576442 CAACACTTTAGTTACATTTCCCTGATT 58.424 33.333 0.00 0.00 0.00 2.57
350 351 7.942341 TCAACACTTTAGTTACATTTCCCTGAT 59.058 33.333 0.00 0.00 0.00 2.90
351 352 7.284074 TCAACACTTTAGTTACATTTCCCTGA 58.716 34.615 0.00 0.00 0.00 3.86
352 353 7.504924 TCAACACTTTAGTTACATTTCCCTG 57.495 36.000 0.00 0.00 0.00 4.45
353 354 8.706322 AATCAACACTTTAGTTACATTTCCCT 57.294 30.769 0.00 0.00 0.00 4.20
354 355 8.573035 TGAATCAACACTTTAGTTACATTTCCC 58.427 33.333 0.00 0.00 0.00 3.97
355 356 9.394477 GTGAATCAACACTTTAGTTACATTTCC 57.606 33.333 0.00 0.00 37.73 3.13
356 357 9.944663 TGTGAATCAACACTTTAGTTACATTTC 57.055 29.630 0.00 0.00 40.87 2.17
400 401 6.073657 GCTAACACACGGTGAATAGTTGTTTA 60.074 38.462 16.29 3.08 36.96 2.01
404 405 3.743911 TGCTAACACACGGTGAATAGTTG 59.256 43.478 16.29 3.84 36.96 3.16
407 408 5.351233 TTTTGCTAACACACGGTGAATAG 57.649 39.130 16.29 13.61 36.96 1.73
408 409 5.950758 ATTTTGCTAACACACGGTGAATA 57.049 34.783 16.29 3.90 36.96 1.75
409 410 4.846779 ATTTTGCTAACACACGGTGAAT 57.153 36.364 16.29 2.87 36.96 2.57
415 416 5.918011 ACCATGTTAATTTTGCTAACACACG 59.082 36.000 0.00 0.00 40.94 4.49
424 425 3.120234 GCAGCCAACCATGTTAATTTTGC 60.120 43.478 0.00 0.00 0.00 3.68
431 432 1.993956 ACAAGCAGCCAACCATGTTA 58.006 45.000 0.00 0.00 0.00 2.41
433 434 1.122227 AAACAAGCAGCCAACCATGT 58.878 45.000 0.00 0.00 0.00 3.21
434 435 2.243602 AAAACAAGCAGCCAACCATG 57.756 45.000 0.00 0.00 0.00 3.66
437 438 2.204237 CAGAAAAACAAGCAGCCAACC 58.796 47.619 0.00 0.00 0.00 3.77
443 444 3.126073 GGCTTTCCAGAAAAACAAGCAG 58.874 45.455 4.71 0.00 41.42 4.24
449 450 0.319555 GGCCGGCTTTCCAGAAAAAC 60.320 55.000 28.56 0.00 0.00 2.43
452 453 1.152652 TTGGCCGGCTTTCCAGAAA 60.153 52.632 28.56 5.40 33.32 2.52
458 459 2.259511 CAAGCTTGGCCGGCTTTC 59.740 61.111 28.56 10.74 46.24 2.62
473 477 0.885196 GTTGATTTACCAGGCGGCAA 59.115 50.000 13.08 0.00 34.57 4.52
537 544 9.224058 GTGTTTTTCACGCTAAACAAACTAATA 57.776 29.630 0.00 0.00 43.51 0.98
578 585 8.530311 TGCAACTTGTACATGGAAATATTGAAT 58.470 29.630 12.86 0.00 0.00 2.57
580 587 7.459795 TGCAACTTGTACATGGAAATATTGA 57.540 32.000 12.86 0.00 0.00 2.57
581 588 8.028354 TCTTGCAACTTGTACATGGAAATATTG 58.972 33.333 12.86 8.02 0.00 1.90
582 589 8.121305 TCTTGCAACTTGTACATGGAAATATT 57.879 30.769 12.86 0.00 0.00 1.28
583 590 7.701539 TCTTGCAACTTGTACATGGAAATAT 57.298 32.000 12.86 0.00 0.00 1.28
584 591 7.611467 AGATCTTGCAACTTGTACATGGAAATA 59.389 33.333 12.86 1.28 0.00 1.40
585 592 6.435277 AGATCTTGCAACTTGTACATGGAAAT 59.565 34.615 12.86 5.52 0.00 2.17
586 593 5.769662 AGATCTTGCAACTTGTACATGGAAA 59.230 36.000 12.86 1.58 0.00 3.13
587 594 5.316167 AGATCTTGCAACTTGTACATGGAA 58.684 37.500 12.86 7.56 0.00 3.53
588 595 4.910195 AGATCTTGCAACTTGTACATGGA 58.090 39.130 12.86 0.00 0.00 3.41
589 596 4.696877 TGAGATCTTGCAACTTGTACATGG 59.303 41.667 12.86 4.52 0.00 3.66
590 597 5.868043 TGAGATCTTGCAACTTGTACATG 57.132 39.130 7.18 7.18 0.00 3.21
591 598 7.279536 CACTATGAGATCTTGCAACTTGTACAT 59.720 37.037 0.00 0.65 0.00 2.29
599 606 4.093998 CACCACACTATGAGATCTTGCAAC 59.906 45.833 0.00 0.00 0.00 4.17
600 607 4.256110 CACCACACTATGAGATCTTGCAA 58.744 43.478 0.00 0.00 0.00 4.08
603 610 4.081476 TCACCACCACACTATGAGATCTTG 60.081 45.833 0.00 0.00 0.00 3.02
606 613 4.679373 ATCACCACCACACTATGAGATC 57.321 45.455 0.00 0.00 0.00 2.75
610 617 3.719871 AGGTATCACCACCACACTATGA 58.280 45.455 0.00 0.00 41.95 2.15
620 627 4.553330 TTTGGAGAGAAGGTATCACCAC 57.447 45.455 0.00 0.00 41.95 4.16
621 628 6.884472 TTATTTGGAGAGAAGGTATCACCA 57.116 37.500 0.00 0.00 41.95 4.17
622 629 7.993183 TCATTTATTTGGAGAGAAGGTATCACC 59.007 37.037 0.00 0.00 38.99 4.02
623 630 8.964476 TCATTTATTTGGAGAGAAGGTATCAC 57.036 34.615 0.00 0.00 0.00 3.06
627 634 9.973661 TTCATTCATTTATTTGGAGAGAAGGTA 57.026 29.630 0.00 0.00 0.00 3.08
628 635 8.884124 TTCATTCATTTATTTGGAGAGAAGGT 57.116 30.769 0.00 0.00 0.00 3.50
694 701 0.739112 GCGAGGAGGCTCTCACAAAG 60.739 60.000 15.23 0.90 33.59 2.77
700 707 2.826738 AGACGCGAGGAGGCTCTC 60.827 66.667 15.93 8.96 0.00 3.20
701 708 2.826738 GAGACGCGAGGAGGCTCT 60.827 66.667 15.93 2.07 0.00 4.09
702 709 2.826738 AGAGACGCGAGGAGGCTC 60.827 66.667 15.93 5.78 0.00 4.70
703 710 2.826738 GAGAGACGCGAGGAGGCT 60.827 66.667 15.93 0.11 0.00 4.58
736 743 4.863925 GTGAGCCTCTCTCGCCGC 62.864 72.222 0.00 0.00 44.51 6.53
765 780 1.134995 TGCGTTGGATCTGTGCTCTAG 60.135 52.381 0.00 0.00 0.00 2.43
772 787 0.392998 GGTGGATGCGTTGGATCTGT 60.393 55.000 0.00 0.00 0.00 3.41
775 790 0.947244 GATGGTGGATGCGTTGGATC 59.053 55.000 0.00 0.00 0.00 3.36
782 797 1.066002 GTTGATTGGATGGTGGATGCG 59.934 52.381 0.00 0.00 0.00 4.73
842 857 2.862223 GCCTCCTCGATTCCCCTCG 61.862 68.421 0.00 0.00 39.99 4.63
1175 1703 3.612371 AAGTGAGCGACGTCGAGGC 62.612 63.158 39.74 26.07 43.02 4.70
1282 1822 2.266055 GACGAGCACCTTGAGGGG 59.734 66.667 1.54 0.00 43.01 4.79
1563 2115 2.268280 CTGAGGTGCCTGAGCCTG 59.732 66.667 0.00 0.00 38.69 4.85
1622 2174 0.745845 AGAGCACGGCACATCAATCC 60.746 55.000 0.00 0.00 0.00 3.01
1918 2473 4.519540 ATTTAAGTGGTGCGCAGAAATT 57.480 36.364 12.22 10.47 0.00 1.82
1919 2474 5.835113 ATATTTAAGTGGTGCGCAGAAAT 57.165 34.783 12.22 12.17 0.00 2.17
1920 2475 6.745159 TTATATTTAAGTGGTGCGCAGAAA 57.255 33.333 12.22 5.15 0.00 2.52
1921 2476 6.745159 TTTATATTTAAGTGGTGCGCAGAA 57.255 33.333 12.22 0.00 0.00 3.02
2095 2657 1.274447 CCAGCTCAGATCACACTCACA 59.726 52.381 0.00 0.00 0.00 3.58
2323 2920 1.062587 GCGGCTTGTATGCACTACTTG 59.937 52.381 0.00 0.00 34.04 3.16
2587 3339 9.301153 AGGAATTTGCATGAATTAAATCGTAAC 57.699 29.630 0.00 0.00 29.75 2.50
2640 3401 5.473504 GCCACCAACCCATAATATAAGAGTG 59.526 44.000 0.00 0.00 0.00 3.51
2641 3402 5.133660 TGCCACCAACCCATAATATAAGAGT 59.866 40.000 0.00 0.00 0.00 3.24
2749 3571 2.049433 ACGTTGGTCTTCTCGGCG 60.049 61.111 0.00 0.00 0.00 6.46
2799 3621 1.939934 TCTGCAACACCTTCAAGTTCG 59.060 47.619 0.00 0.00 0.00 3.95
2813 3635 1.741401 CGCACCCGAAGATCTGCAA 60.741 57.895 0.51 0.00 36.29 4.08
2832 3654 2.859165 TGTCACCTTGTCTTCATCCC 57.141 50.000 0.00 0.00 0.00 3.85
2899 3721 2.158652 TGGGTTTTCACCATACAACCGA 60.159 45.455 0.00 0.00 46.43 4.69
2901 3723 3.616317 GCATGGGTTTTCACCATACAACC 60.616 47.826 0.00 0.00 46.65 3.77
2938 3760 1.146774 TGGGATCTTTCAAGGTTGCCA 59.853 47.619 0.00 0.00 31.42 4.92
2940 3762 1.821136 CCTGGGATCTTTCAAGGTTGC 59.179 52.381 0.00 0.00 0.00 4.17
2972 3806 1.887707 CCTTAATCCGACGCCTGCC 60.888 63.158 0.00 0.00 0.00 4.85
3065 3899 0.101399 CCTGCGAGCATTACGAGACT 59.899 55.000 0.00 0.00 0.00 3.24
3143 3977 0.040499 TTCCCAGGCCACCAATAACC 59.960 55.000 5.01 0.00 0.00 2.85
3153 3987 1.026718 CGATCAAGTGTTCCCAGGCC 61.027 60.000 0.00 0.00 0.00 5.19
3163 3997 0.952497 AGCCACAGTGCGATCAAGTG 60.952 55.000 0.00 0.00 36.02 3.16
3298 4266 0.746659 AGCAAAAAGGGTGCACAGAC 59.253 50.000 20.43 8.27 44.74 3.51
3299 4267 1.484038 AAGCAAAAAGGGTGCACAGA 58.516 45.000 20.43 0.00 44.74 3.41
3300 4268 1.935199 CAAAGCAAAAAGGGTGCACAG 59.065 47.619 20.43 0.03 44.74 3.66
3301 4269 1.277557 ACAAAGCAAAAAGGGTGCACA 59.722 42.857 20.43 0.00 44.74 4.57
3302 4270 1.665169 CACAAAGCAAAAAGGGTGCAC 59.335 47.619 8.80 8.80 44.74 4.57
3303 4271 1.277557 ACACAAAGCAAAAAGGGTGCA 59.722 42.857 0.00 0.00 44.74 4.57
3305 4273 3.594134 TCAACACAAAGCAAAAAGGGTG 58.406 40.909 0.00 0.00 0.00 4.61
3306 4274 3.971245 TCAACACAAAGCAAAAAGGGT 57.029 38.095 0.00 0.00 0.00 4.34
3307 4275 6.917217 TTTATCAACACAAAGCAAAAAGGG 57.083 33.333 0.00 0.00 0.00 3.95
3327 4295 7.947782 ATACCTCCATGAGTAGGGAAATTTA 57.052 36.000 11.83 0.00 36.13 1.40
3331 4299 5.839063 CAGTATACCTCCATGAGTAGGGAAA 59.161 44.000 11.83 0.63 36.13 3.13
3362 4332 7.015487 TGGTTTTGATTGATCAATCCTTCAAGT 59.985 33.333 34.65 8.81 45.30 3.16
3371 4617 8.202137 GGAATCATCTGGTTTTGATTGATCAAT 58.798 33.333 20.85 20.85 45.30 2.57
3413 4830 8.797438 AGCTCCCTTCTTAGAAATTGTTAAAAG 58.203 33.333 0.00 0.00 0.00 2.27
3419 4836 5.880901 TGAAGCTCCCTTCTTAGAAATTGT 58.119 37.500 0.00 0.00 46.13 2.71
3499 4916 1.133976 CAGTAGCTTGCTATTGGGCCT 60.134 52.381 14.69 1.03 0.00 5.19
3520 4960 0.110688 CATCAACTTGCGTGTCACCG 60.111 55.000 0.00 0.00 0.00 4.94
3522 4962 2.755836 AACATCAACTTGCGTGTCAC 57.244 45.000 0.00 0.00 0.00 3.67
3525 4965 2.033299 CCTGAAACATCAACTTGCGTGT 59.967 45.455 0.00 0.00 0.00 4.49
3527 4967 2.297701 ACCTGAAACATCAACTTGCGT 58.702 42.857 0.00 0.00 0.00 5.24
3529 4969 4.507756 GGAAAACCTGAAACATCAACTTGC 59.492 41.667 0.00 0.00 0.00 4.01
3530 4970 5.519927 GTGGAAAACCTGAAACATCAACTTG 59.480 40.000 0.00 0.00 0.00 3.16
3531 4971 5.422012 AGTGGAAAACCTGAAACATCAACTT 59.578 36.000 0.00 0.00 0.00 2.66
3532 4972 4.956075 AGTGGAAAACCTGAAACATCAACT 59.044 37.500 0.00 0.00 0.00 3.16
3533 4973 5.262588 AGTGGAAAACCTGAAACATCAAC 57.737 39.130 0.00 0.00 0.00 3.18
3534 4974 5.420421 TGAAGTGGAAAACCTGAAACATCAA 59.580 36.000 0.00 0.00 0.00 2.57
3535 4975 4.952957 TGAAGTGGAAAACCTGAAACATCA 59.047 37.500 0.00 0.00 0.00 3.07
3536 4976 5.299279 TCTGAAGTGGAAAACCTGAAACATC 59.701 40.000 0.00 0.00 0.00 3.06
3537 4977 5.200483 TCTGAAGTGGAAAACCTGAAACAT 58.800 37.500 0.00 0.00 0.00 2.71
3538 4978 4.594970 TCTGAAGTGGAAAACCTGAAACA 58.405 39.130 0.00 0.00 0.00 2.83
3576 5458 9.399403 GAAAGAGGTAAATCAATCTTTGAACAC 57.601 33.333 3.93 0.00 43.95 3.32
3577 5459 9.354673 AGAAAGAGGTAAATCAATCTTTGAACA 57.645 29.630 3.93 0.00 43.95 3.18
3617 5499 3.997681 GTCTGGCCTAGTTTTTCTCTGAC 59.002 47.826 3.32 0.00 0.00 3.51
3624 5506 4.993028 TGTTATGGTCTGGCCTAGTTTTT 58.007 39.130 3.32 0.00 38.35 1.94
3645 5712 9.986833 TTGTAAAATGATAAGTCGATCATGTTG 57.013 29.630 10.96 0.00 44.15 3.33
3702 5769 2.344950 CTGAAGTGCTTGCTCACCTAG 58.655 52.381 0.00 0.00 37.68 3.02
3787 5858 2.794103 TCCATGTTTGGTCACCTCATG 58.206 47.619 15.49 15.49 44.06 3.07
3788 5859 3.744940 ATCCATGTTTGGTCACCTCAT 57.255 42.857 0.00 0.00 44.06 2.90
3789 5860 3.329225 TGTATCCATGTTTGGTCACCTCA 59.671 43.478 0.00 0.00 44.06 3.86
3790 5861 3.950397 TGTATCCATGTTTGGTCACCTC 58.050 45.455 0.00 0.00 44.06 3.85
3812 5883 9.927668 CTTTTCCTTGCTTAATTTGGAGATTTA 57.072 29.630 0.00 0.00 0.00 1.40
3831 5902 0.321122 CCTGTCAGAGCGCTTTTCCT 60.321 55.000 13.26 0.00 0.00 3.36
3832 5903 0.603975 ACCTGTCAGAGCGCTTTTCC 60.604 55.000 13.26 0.00 0.00 3.13
3838 5909 0.601311 ACTTTGACCTGTCAGAGCGC 60.601 55.000 15.47 0.00 43.30 5.92
3839 5910 2.600731 CTACTTTGACCTGTCAGAGCG 58.399 52.381 15.47 5.79 43.30 5.03
3841 5912 4.873746 TTCCTACTTTGACCTGTCAGAG 57.126 45.455 14.31 14.31 44.55 3.35
3842 5913 4.654262 ACTTTCCTACTTTGACCTGTCAGA 59.346 41.667 0.00 0.00 41.13 3.27
3843 5914 4.962155 ACTTTCCTACTTTGACCTGTCAG 58.038 43.478 0.00 0.00 41.13 3.51
3844 5915 4.407621 TGACTTTCCTACTTTGACCTGTCA 59.592 41.667 0.00 0.00 37.91 3.58
3845 5916 4.957296 TGACTTTCCTACTTTGACCTGTC 58.043 43.478 0.00 0.00 0.00 3.51
3854 8389 9.875708 AGATAGAGATACATGACTTTCCTACTT 57.124 33.333 0.00 0.00 0.00 2.24
3901 8436 2.040278 CACCATCTTGGAAGACCTTGGA 59.960 50.000 12.48 0.00 40.96 3.53
3907 8442 4.249661 GACTTCTCACCATCTTGGAAGAC 58.750 47.826 0.00 0.00 40.96 3.01
3916 8451 4.008074 TCAGGTTTGACTTCTCACCATC 57.992 45.455 0.00 0.00 0.00 3.51
3922 8457 6.625873 ACATTTCTTCAGGTTTGACTTCTC 57.374 37.500 0.00 0.00 31.71 2.87
3923 8458 7.556275 TGTAACATTTCTTCAGGTTTGACTTCT 59.444 33.333 0.00 0.00 31.71 2.85
3924 8459 7.703328 TGTAACATTTCTTCAGGTTTGACTTC 58.297 34.615 0.00 0.00 31.71 3.01
3925 8460 7.339466 ACTGTAACATTTCTTCAGGTTTGACTT 59.661 33.333 0.00 0.00 31.71 3.01
3926 8461 6.828785 ACTGTAACATTTCTTCAGGTTTGACT 59.171 34.615 0.00 0.00 31.71 3.41
3927 8462 6.912591 CACTGTAACATTTCTTCAGGTTTGAC 59.087 38.462 0.00 0.00 31.71 3.18
3928 8463 6.459573 GCACTGTAACATTTCTTCAGGTTTGA 60.460 38.462 0.00 0.00 0.00 2.69
3939 8474 9.463443 ACTTGAAAAATAGCACTGTAACATTTC 57.537 29.630 0.00 0.00 0.00 2.17
3941 8476 9.463443 GAACTTGAAAAATAGCACTGTAACATT 57.537 29.630 0.00 0.00 0.00 2.71
3947 8482 4.819630 TCGGAACTTGAAAAATAGCACTGT 59.180 37.500 0.00 0.00 0.00 3.55
3949 8484 5.705441 TCATCGGAACTTGAAAAATAGCACT 59.295 36.000 0.00 0.00 0.00 4.40
3950 8485 5.938322 TCATCGGAACTTGAAAAATAGCAC 58.062 37.500 0.00 0.00 0.00 4.40
3956 8491 6.293955 GGTTGATCTCATCGGAACTTGAAAAA 60.294 38.462 0.00 0.00 0.00 1.94
3961 8496 3.599343 TGGTTGATCTCATCGGAACTTG 58.401 45.455 0.00 0.00 0.00 3.16
3963 8498 3.801698 CATGGTTGATCTCATCGGAACT 58.198 45.455 0.00 0.00 0.00 3.01
3965 8500 2.093021 TGCATGGTTGATCTCATCGGAA 60.093 45.455 0.00 0.00 0.00 4.30
3967 8502 1.957668 TGCATGGTTGATCTCATCGG 58.042 50.000 0.00 0.00 0.00 4.18
3981 8516 5.391736 GGTGTTCTCTCTCAAATCTTGCATG 60.392 44.000 0.00 0.00 0.00 4.06
3989 8524 3.866449 GCTTCGGGTGTTCTCTCTCAAAT 60.866 47.826 0.00 0.00 0.00 2.32
3990 8525 2.548067 GCTTCGGGTGTTCTCTCTCAAA 60.548 50.000 0.00 0.00 0.00 2.69
3991 8526 1.000955 GCTTCGGGTGTTCTCTCTCAA 59.999 52.381 0.00 0.00 0.00 3.02
3992 8527 0.603569 GCTTCGGGTGTTCTCTCTCA 59.396 55.000 0.00 0.00 0.00 3.27
3993 8528 0.603569 TGCTTCGGGTGTTCTCTCTC 59.396 55.000 0.00 0.00 0.00 3.20
3994 8529 1.270907 ATGCTTCGGGTGTTCTCTCT 58.729 50.000 0.00 0.00 0.00 3.10
3995 8530 2.100605 AATGCTTCGGGTGTTCTCTC 57.899 50.000 0.00 0.00 0.00 3.20
3996 8531 2.568623 AAATGCTTCGGGTGTTCTCT 57.431 45.000 0.00 0.00 0.00 3.10
3997 8532 2.814336 AGAAAATGCTTCGGGTGTTCTC 59.186 45.455 0.00 0.00 0.00 2.87
3998 8533 2.863809 AGAAAATGCTTCGGGTGTTCT 58.136 42.857 0.00 0.00 0.00 3.01
3999 8534 4.000988 TCTAGAAAATGCTTCGGGTGTTC 58.999 43.478 0.00 0.00 0.00 3.18
4000 8535 3.751698 GTCTAGAAAATGCTTCGGGTGTT 59.248 43.478 0.00 0.00 0.00 3.32
4001 8536 3.008049 AGTCTAGAAAATGCTTCGGGTGT 59.992 43.478 0.00 0.00 0.00 4.16
4002 8537 3.600388 AGTCTAGAAAATGCTTCGGGTG 58.400 45.455 0.00 0.00 0.00 4.61
4003 8538 3.983044 AGTCTAGAAAATGCTTCGGGT 57.017 42.857 0.00 0.00 0.00 5.28
4004 8539 4.695455 TGAAAGTCTAGAAAATGCTTCGGG 59.305 41.667 0.00 0.00 0.00 5.14
4005 8540 5.390991 GGTGAAAGTCTAGAAAATGCTTCGG 60.391 44.000 0.00 0.00 0.00 4.30
4006 8541 5.390991 GGGTGAAAGTCTAGAAAATGCTTCG 60.391 44.000 0.00 0.00 0.00 3.79
4007 8542 5.473504 TGGGTGAAAGTCTAGAAAATGCTTC 59.526 40.000 0.00 0.00 0.00 3.86
4008 8543 5.385198 TGGGTGAAAGTCTAGAAAATGCTT 58.615 37.500 0.00 0.00 0.00 3.91
4009 8544 4.985538 TGGGTGAAAGTCTAGAAAATGCT 58.014 39.130 0.00 0.00 0.00 3.79
4010 8545 5.705609 TTGGGTGAAAGTCTAGAAAATGC 57.294 39.130 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.