Multiple sequence alignment - TraesCS2A01G584900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G584900 chr2A 100.000 5818 0 0 1 5818 776037702 776043519 0.000000e+00 10744.0
1 TraesCS2A01G584900 chr2A 94.043 235 11 1 3101 3332 776040567 776040801 2.580000e-93 353.0
2 TraesCS2A01G584900 chr2A 94.043 235 11 1 2866 3100 776040802 776041033 2.580000e-93 353.0
3 TraesCS2A01G584900 chr2A 89.216 102 7 2 3101 3198 776040451 776040552 2.200000e-24 124.0
4 TraesCS2A01G584900 chr2A 89.216 102 7 2 2750 2851 776040802 776040899 2.200000e-24 124.0
5 TraesCS2A01G584900 chr2D 91.800 2878 162 40 265 3100 651615480 651612635 0.000000e+00 3940.0
6 TraesCS2A01G584900 chr2D 92.746 2440 112 27 3101 5495 651612866 651610447 0.000000e+00 3465.0
7 TraesCS2A01G584900 chr2D 93.966 116 7 0 2846 2961 651613002 651612887 5.990000e-40 176.0
8 TraesCS2A01G584900 chr2D 92.157 102 4 2 3101 3198 651612982 651612881 2.190000e-29 141.0
9 TraesCS2A01G584900 chr2D 88.333 60 7 0 4217 4276 33739240 33739181 8.090000e-09 73.1
10 TraesCS2A01G584900 chrUn 87.142 2512 184 72 69 2537 23674963 23677378 0.000000e+00 2721.0
11 TraesCS2A01G584900 chrUn 91.972 1968 110 16 3886 5818 23678314 23680268 0.000000e+00 2715.0
12 TraesCS2A01G584900 chrUn 93.991 649 30 4 3101 3743 23677656 23678301 0.000000e+00 974.0
13 TraesCS2A01G584900 chrUn 93.548 496 30 1 2605 3100 23677395 23677888 0.000000e+00 737.0
14 TraesCS2A01G584900 chrUn 79.933 299 31 16 2193 2487 23644766 23645039 5.950000e-45 193.0
15 TraesCS2A01G584900 chrUn 79.264 299 33 15 2193 2487 23637618 23637891 1.290000e-41 182.0
16 TraesCS2A01G584900 chrUn 93.966 116 7 0 2846 2961 23677520 23677635 5.990000e-40 176.0
17 TraesCS2A01G584900 chrUn 90.196 102 6 2 3101 3198 23677540 23677641 4.730000e-26 130.0
18 TraesCS2A01G584900 chr2B 91.595 1273 74 15 3962 5210 781182147 781180884 0.000000e+00 1727.0
19 TraesCS2A01G584900 chr2B 93.846 715 35 5 3259 3968 781183128 781182418 0.000000e+00 1068.0
20 TraesCS2A01G584900 chr2B 93.243 74 3 1 3027 3100 781183128 781183057 2.220000e-19 108.0
21 TraesCS2A01G584900 chr6A 81.006 179 20 9 859 1023 611560687 611560509 4.730000e-26 130.0
22 TraesCS2A01G584900 chr4B 94.595 74 3 1 101 174 357149748 357149820 4.760000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G584900 chr2A 776037702 776043519 5817 False 2339.600000 10744 93.303600 1 5818 5 chr2A.!!$F1 5817
1 TraesCS2A01G584900 chr2D 651610447 651615480 5033 True 1930.500000 3940 92.667250 265 5495 4 chr2D.!!$R2 5230
2 TraesCS2A01G584900 chrUn 23674963 23680268 5305 False 1242.166667 2721 91.802500 69 5818 6 chrUn.!!$F3 5749
3 TraesCS2A01G584900 chr2B 781180884 781183128 2244 True 967.666667 1727 92.894667 3027 5210 3 chr2B.!!$R1 2183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.179097 GCTAGCCAAGGAAGGACTCG 60.179 60.000 2.29 0.0 0.00 4.18 F
1089 1152 0.171455 CTGCCGTAGCTTCTTCGTCT 59.829 55.000 0.00 0.0 40.80 4.18 F
1090 1153 0.601558 TGCCGTAGCTTCTTCGTCTT 59.398 50.000 0.00 0.0 40.80 3.01 F
1091 1154 1.270068 GCCGTAGCTTCTTCGTCTTC 58.730 55.000 0.00 0.0 35.50 2.87 F
1092 1155 1.402456 GCCGTAGCTTCTTCGTCTTCA 60.402 52.381 0.00 0.0 35.50 3.02 F
1964 2028 1.565759 TGCAGCCATCTAACCCAGAAT 59.434 47.619 0.00 0.0 36.67 2.40 F
3125 3202 0.767375 ATGGTGAAGTGTGCTGACCT 59.233 50.000 0.00 0.0 32.19 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1152 1215 0.030101 GAACGCTGGAGAGGATCGAG 59.970 60.000 0.00 0.0 42.67 4.04 R
2001 2065 0.449388 GTGAATGGAGAAAGCGCAGG 59.551 55.000 11.47 0.0 0.00 4.85 R
2689 2766 1.001181 CACCATGGCAGGAAAAGGTTG 59.999 52.381 13.04 0.0 0.00 3.77 R
2862 2939 3.440173 AGGCACTTCACCATTTGTATTCG 59.560 43.478 0.00 0.0 27.25 3.34 R
2933 3010 3.694566 GCCACCAAAACAGAGTATAAGGG 59.305 47.826 0.00 0.0 0.00 3.95 R
3225 3302 0.550914 AGCTCCCACAGGTCAAAACA 59.449 50.000 0.00 0.0 0.00 2.83 R
5086 5483 0.179156 CTGCCAATTTGCCTAGCGTG 60.179 55.000 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.179599 CCCCCTCCCTCCCCTCTC 62.180 77.778 0.00 0.00 0.00 3.20
19 20 4.179599 CCCCTCCCTCCCCTCTCC 62.180 77.778 0.00 0.00 0.00 3.71
20 21 3.039526 CCCTCCCTCCCCTCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
21 22 2.612251 CCTCCCTCCCCTCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
22 23 2.612251 CTCCCTCCCCTCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
23 24 3.036959 TCCCTCCCCTCTCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
24 25 4.548513 CCCTCCCCTCTCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
26 27 4.465446 CTCCCCTCTCCTCCCGCA 62.465 72.222 0.00 0.00 0.00 5.69
27 28 4.465446 TCCCCTCTCCTCCCGCAG 62.465 72.222 0.00 0.00 0.00 5.18
28 29 4.787280 CCCCTCTCCTCCCGCAGT 62.787 72.222 0.00 0.00 0.00 4.40
29 30 2.279073 CCCTCTCCTCCCGCAGTA 59.721 66.667 0.00 0.00 0.00 2.74
30 31 1.830408 CCCTCTCCTCCCGCAGTAG 60.830 68.421 0.00 0.00 0.00 2.57
31 32 2.494530 CCTCTCCTCCCGCAGTAGC 61.495 68.421 0.00 0.00 37.42 3.58
32 33 1.454847 CTCTCCTCCCGCAGTAGCT 60.455 63.158 0.00 0.00 39.10 3.32
33 34 1.733402 CTCTCCTCCCGCAGTAGCTG 61.733 65.000 0.00 0.00 39.10 4.24
34 35 2.759973 TCCTCCCGCAGTAGCTGG 60.760 66.667 0.00 0.00 45.55 4.85
38 39 4.845580 CCCGCAGTAGCTGGGCAG 62.846 72.222 0.00 0.00 43.82 4.85
52 53 4.232310 GCAGCTAGCCAAGGAAGG 57.768 61.111 12.13 0.00 37.23 3.46
53 54 1.604378 GCAGCTAGCCAAGGAAGGA 59.396 57.895 12.13 0.00 37.23 3.36
54 55 0.746204 GCAGCTAGCCAAGGAAGGAC 60.746 60.000 12.13 0.00 37.23 3.85
55 56 0.908198 CAGCTAGCCAAGGAAGGACT 59.092 55.000 12.13 0.00 0.00 3.85
56 57 1.134551 CAGCTAGCCAAGGAAGGACTC 60.135 57.143 12.13 0.00 0.00 3.36
57 58 0.179097 GCTAGCCAAGGAAGGACTCG 60.179 60.000 2.29 0.00 0.00 4.18
58 59 0.179097 CTAGCCAAGGAAGGACTCGC 60.179 60.000 0.00 0.00 0.00 5.03
59 60 1.614241 TAGCCAAGGAAGGACTCGCC 61.614 60.000 0.00 0.00 0.00 5.54
60 61 2.125512 CCAAGGAAGGACTCGCCG 60.126 66.667 0.00 0.00 43.43 6.46
61 62 2.657237 CAAGGAAGGACTCGCCGT 59.343 61.111 0.00 0.00 43.43 5.68
62 63 1.446272 CAAGGAAGGACTCGCCGTC 60.446 63.158 0.00 0.00 43.54 4.79
201 222 3.447025 GATCGCAGGCGGGTAAGCT 62.447 63.158 14.24 0.00 40.25 3.74
230 254 2.787866 CCTTCTCCCCTCTCCCCA 59.212 66.667 0.00 0.00 0.00 4.96
231 255 1.383803 CCTTCTCCCCTCTCCCCAG 60.384 68.421 0.00 0.00 0.00 4.45
232 256 1.394151 CTTCTCCCCTCTCCCCAGT 59.606 63.158 0.00 0.00 0.00 4.00
233 257 0.689412 CTTCTCCCCTCTCCCCAGTC 60.689 65.000 0.00 0.00 0.00 3.51
234 258 2.041405 CTCCCCTCTCCCCAGTCC 60.041 72.222 0.00 0.00 0.00 3.85
235 259 3.695825 TCCCCTCTCCCCAGTCCC 61.696 72.222 0.00 0.00 0.00 4.46
236 260 3.700350 CCCCTCTCCCCAGTCCCT 61.700 72.222 0.00 0.00 0.00 4.20
237 261 2.366167 CCCTCTCCCCAGTCCCTG 60.366 72.222 0.00 0.00 0.00 4.45
250 274 3.400928 CCCTGCTCTCCTGCTGCT 61.401 66.667 0.00 0.00 0.00 4.24
251 275 2.125065 CCTGCTCTCCTGCTGCTG 60.125 66.667 0.00 0.00 0.00 4.41
252 276 2.820479 CTGCTCTCCTGCTGCTGC 60.820 66.667 8.89 8.89 40.20 5.25
253 277 4.405671 TGCTCTCCTGCTGCTGCC 62.406 66.667 13.47 0.00 38.71 4.85
255 279 4.834453 CTCTCCTGCTGCTGCCGG 62.834 72.222 18.18 18.18 43.71 6.13
280 304 1.901948 CATGCTATGCCCCAGCTGG 60.902 63.158 26.87 26.87 39.83 4.85
291 315 4.120755 CAGCTGGGCTCCCCTTCC 62.121 72.222 5.57 0.00 45.70 3.46
333 358 0.319211 TCGATTCCGTTTCGTGCTGT 60.319 50.000 0.00 0.00 37.82 4.40
343 368 0.389037 TTCGTGCTGTCTGCTGCTAG 60.389 55.000 0.00 0.00 43.37 3.42
346 371 1.018226 GTGCTGTCTGCTGCTAGTGG 61.018 60.000 0.00 0.00 43.37 4.00
373 408 0.392461 TCTAGTCAATTGCGGGTGCC 60.392 55.000 0.00 0.00 41.78 5.01
456 503 1.553248 AGCTAGGTTGTTGATGGCGTA 59.447 47.619 0.00 0.00 0.00 4.42
457 504 2.170607 AGCTAGGTTGTTGATGGCGTAT 59.829 45.455 0.00 0.00 0.00 3.06
458 505 3.386726 AGCTAGGTTGTTGATGGCGTATA 59.613 43.478 0.00 0.00 0.00 1.47
459 506 4.040461 AGCTAGGTTGTTGATGGCGTATAT 59.960 41.667 0.00 0.00 0.00 0.86
460 507 4.152402 GCTAGGTTGTTGATGGCGTATATG 59.848 45.833 0.00 0.00 0.00 1.78
461 508 4.150897 AGGTTGTTGATGGCGTATATGT 57.849 40.909 0.00 0.00 0.00 2.29
462 509 5.284861 AGGTTGTTGATGGCGTATATGTA 57.715 39.130 0.00 0.00 0.00 2.29
463 510 5.054477 AGGTTGTTGATGGCGTATATGTAC 58.946 41.667 0.00 0.00 0.00 2.90
565 612 8.199176 TCATACTTACTAGTTCTGACTTCTCG 57.801 38.462 0.00 0.00 37.33 4.04
594 644 0.815615 GGAGTTAGAATGGGGCTGCG 60.816 60.000 0.00 0.00 0.00 5.18
595 645 0.815615 GAGTTAGAATGGGGCTGCGG 60.816 60.000 0.00 0.00 0.00 5.69
672 722 0.315625 GATCGATGCACGCACACATG 60.316 55.000 0.54 0.00 42.26 3.21
674 724 1.225827 CGATGCACGCACACATGTC 60.226 57.895 0.00 0.00 34.51 3.06
676 726 1.358877 GATGCACGCACACATGTCTA 58.641 50.000 0.00 0.00 0.00 2.59
677 727 1.935873 GATGCACGCACACATGTCTAT 59.064 47.619 0.00 0.00 0.00 1.98
678 728 1.807139 TGCACGCACACATGTCTATT 58.193 45.000 0.00 0.00 0.00 1.73
679 729 1.464219 TGCACGCACACATGTCTATTG 59.536 47.619 0.00 0.00 0.00 1.90
725 777 2.912025 CCCTTGCGTTGCCCTGTT 60.912 61.111 0.00 0.00 0.00 3.16
738 790 1.548719 GCCCTGTTTGTCCCCATTTAC 59.451 52.381 0.00 0.00 0.00 2.01
740 792 3.440127 CCCTGTTTGTCCCCATTTACAT 58.560 45.455 0.00 0.00 0.00 2.29
743 795 5.237048 CCTGTTTGTCCCCATTTACATTTG 58.763 41.667 0.00 0.00 0.00 2.32
744 796 4.636249 TGTTTGTCCCCATTTACATTTGC 58.364 39.130 0.00 0.00 0.00 3.68
746 798 4.533919 TTGTCCCCATTTACATTTGCAG 57.466 40.909 0.00 0.00 0.00 4.41
750 802 2.419021 CCCCATTTACATTTGCAGGCTG 60.419 50.000 10.94 10.94 0.00 4.85
759 811 1.813513 TTTGCAGGCTGAGCTAAGTC 58.186 50.000 20.86 0.00 0.00 3.01
760 812 0.979665 TTGCAGGCTGAGCTAAGTCT 59.020 50.000 20.86 0.00 30.27 3.24
773 825 2.544685 CTAAGTCTTCTGTGGATGGCG 58.455 52.381 0.00 0.00 0.00 5.69
811 864 2.164624 GTCATGTACCGAGCTTCTCTGT 59.835 50.000 0.00 0.00 32.96 3.41
835 891 3.389983 TGCTGGTGTTAGTTAACCTCTGT 59.610 43.478 0.88 0.00 37.36 3.41
887 947 6.931840 ACTTCTGACCATGTTCTTCTAAGTTC 59.068 38.462 0.00 0.00 0.00 3.01
891 951 6.464222 TGACCATGTTCTTCTAAGTTCGAAT 58.536 36.000 0.00 0.00 0.00 3.34
894 954 6.591834 ACCATGTTCTTCTAAGTTCGAATGAG 59.408 38.462 0.00 0.00 0.00 2.90
923 983 2.098770 GCAATTCTGACTTCTGATGCCC 59.901 50.000 2.03 0.00 0.00 5.36
937 997 0.322816 ATGCCCGCTTGTCTGATTGT 60.323 50.000 0.00 0.00 0.00 2.71
939 999 0.727398 GCCCGCTTGTCTGATTGTAC 59.273 55.000 0.00 0.00 0.00 2.90
940 1000 1.676014 GCCCGCTTGTCTGATTGTACT 60.676 52.381 0.00 0.00 0.00 2.73
941 1001 2.418197 GCCCGCTTGTCTGATTGTACTA 60.418 50.000 0.00 0.00 0.00 1.82
950 1010 7.416890 GCTTGTCTGATTGTACTAGTAGGACAT 60.417 40.741 16.12 6.61 32.50 3.06
951 1011 7.956328 TGTCTGATTGTACTAGTAGGACATT 57.044 36.000 16.12 12.45 0.00 2.71
970 1030 3.884704 TTGTGGGTGCCTGATGCCC 62.885 63.158 0.00 0.00 42.64 5.36
1053 1116 1.349026 CCATCCAATCCTACGCCATCT 59.651 52.381 0.00 0.00 0.00 2.90
1056 1119 2.115427 TCCAATCCTACGCCATCTTCA 58.885 47.619 0.00 0.00 0.00 3.02
1065 1128 1.596934 GCCATCTTCACGTGAGGGA 59.403 57.895 25.30 22.44 45.65 4.20
1089 1152 0.171455 CTGCCGTAGCTTCTTCGTCT 59.829 55.000 0.00 0.00 40.80 4.18
1090 1153 0.601558 TGCCGTAGCTTCTTCGTCTT 59.398 50.000 0.00 0.00 40.80 3.01
1091 1154 1.270068 GCCGTAGCTTCTTCGTCTTC 58.730 55.000 0.00 0.00 35.50 2.87
1092 1155 1.402456 GCCGTAGCTTCTTCGTCTTCA 60.402 52.381 0.00 0.00 35.50 3.02
1093 1156 2.735762 GCCGTAGCTTCTTCGTCTTCAT 60.736 50.000 0.00 0.00 35.50 2.57
1094 1157 3.109619 CCGTAGCTTCTTCGTCTTCATC 58.890 50.000 0.00 0.00 0.00 2.92
1095 1158 3.181495 CCGTAGCTTCTTCGTCTTCATCT 60.181 47.826 0.00 0.00 0.00 2.90
1096 1159 4.035324 CCGTAGCTTCTTCGTCTTCATCTA 59.965 45.833 0.00 0.00 0.00 1.98
1108 1171 2.431057 TCTTCATCTACTTCTTCCGCCC 59.569 50.000 0.00 0.00 0.00 6.13
1121 1184 3.847602 CGCCCCAGAGGAGCAGAG 61.848 72.222 0.00 0.00 38.24 3.35
1132 1195 3.708220 GAGCAGAGGAAGGACGGCG 62.708 68.421 4.80 4.80 33.00 6.46
1152 1215 3.741476 CCGAAGCAGTGCAAGGCC 61.741 66.667 19.20 0.00 0.00 5.19
1155 1218 2.670934 AAGCAGTGCAAGGCCTCG 60.671 61.111 19.20 0.00 0.00 4.63
1164 1227 1.745264 CAAGGCCTCGATCCTCTCC 59.255 63.158 5.23 0.00 32.45 3.71
1204 1267 1.899437 GCCGGACCAGGATCAGTCAA 61.899 60.000 5.05 0.00 34.58 3.18
1245 1308 1.622607 CCGGGTCCTATGCTTGGTCA 61.623 60.000 0.00 0.00 0.00 4.02
1413 1476 1.580942 GCATGCTGCGTTCTTGGAA 59.419 52.632 11.37 0.00 31.71 3.53
1425 1488 3.550233 CGTTCTTGGAAGACTTCTCGTCA 60.550 47.826 14.72 1.76 45.32 4.35
1429 1492 2.594131 TGGAAGACTTCTCGTCAAGGA 58.406 47.619 14.72 0.00 45.32 3.36
1474 1537 3.525268 AGTTTGGCCTGTTCTTGTTTG 57.475 42.857 3.32 0.00 0.00 2.93
1683 1746 7.610580 TGATTGTTTTGAAACCCTTCCTTAT 57.389 32.000 4.32 0.00 38.11 1.73
1894 1958 3.887621 TCAGTTACAGTAGGTGATGGC 57.112 47.619 0.00 0.00 0.00 4.40
1955 2019 5.471116 GTCAATGTTCATATGCAGCCATCTA 59.529 40.000 0.00 0.00 32.85 1.98
1964 2028 1.565759 TGCAGCCATCTAACCCAGAAT 59.434 47.619 0.00 0.00 36.67 2.40
1968 2032 5.251468 TGCAGCCATCTAACCCAGAATATAT 59.749 40.000 0.00 0.00 36.67 0.86
2001 2065 1.734465 CCTGTTCGGTGATTCTGAAGC 59.266 52.381 0.00 0.00 41.44 3.86
2167 2231 5.659440 GGAATGAAAGTTTTCCTATGGCA 57.341 39.130 0.00 0.00 38.68 4.92
2176 2240 6.067217 AGTTTTCCTATGGCACTCTATGTT 57.933 37.500 0.00 0.00 0.00 2.71
2393 2459 5.448632 GCGGTTCCTGTATCTATTTTTGGTG 60.449 44.000 0.00 0.00 0.00 4.17
2397 2463 7.775561 GGTTCCTGTATCTATTTTTGGTGATCT 59.224 37.037 0.00 0.00 0.00 2.75
2398 2464 8.616076 GTTCCTGTATCTATTTTTGGTGATCTG 58.384 37.037 0.00 0.00 0.00 2.90
2399 2465 8.089625 TCCTGTATCTATTTTTGGTGATCTGA 57.910 34.615 0.00 0.00 0.00 3.27
2508 2577 5.371115 AAAATACATACACCACACACTGC 57.629 39.130 0.00 0.00 0.00 4.40
2544 2613 9.125026 CTTATAATCTGATTTGGTGGCTAGTTT 57.875 33.333 8.38 0.00 0.00 2.66
2570 2645 8.670521 TCCTGATCTTAATCATATAGAGGCAA 57.329 34.615 0.00 0.00 41.05 4.52
2584 2659 9.736023 CATATAGAGGCAAATTAACCTTTCAAC 57.264 33.333 0.97 0.00 36.05 3.18
2603 2678 3.340814 ACCCTTCACAGCTATCAACTG 57.659 47.619 0.00 0.00 41.08 3.16
2689 2766 9.521503 GCTTGGTAGGAAATCATTCTAATTTTC 57.478 33.333 0.00 0.00 35.79 2.29
2729 2806 5.048713 TGGTGTCACATACTATCTGATAGCG 60.049 44.000 21.58 13.89 36.30 4.26
2736 2813 5.825679 ACATACTATCTGATAGCGATCCTCC 59.174 44.000 21.58 0.00 36.30 4.30
2771 2848 2.665165 ACAAATGGTGAAGTGCCTTGA 58.335 42.857 0.00 0.00 0.00 3.02
2780 2857 2.271800 GAAGTGCCTTGATGACCTACG 58.728 52.381 0.00 0.00 0.00 3.51
2859 2936 6.116126 GTGGCTAGTTCATCCTCAGTAAAAT 58.884 40.000 0.00 0.00 0.00 1.82
2862 2939 7.769044 TGGCTAGTTCATCCTCAGTAAAATTAC 59.231 37.037 0.00 0.00 0.00 1.89
2907 2984 4.575885 TGCTGACCTACCAATTACTTGAC 58.424 43.478 0.00 0.00 34.04 3.18
3008 3085 6.928492 GGCAAATTAATCTTTTGACCTGTGAA 59.072 34.615 4.56 0.00 36.32 3.18
3055 3132 4.657952 GGGTGCCCCTGTGAATAC 57.342 61.111 3.16 0.00 41.34 1.89
3056 3133 1.999346 GGGTGCCCCTGTGAATACT 59.001 57.895 3.16 0.00 41.34 2.12
3057 3134 1.209621 GGGTGCCCCTGTGAATACTA 58.790 55.000 3.16 0.00 41.34 1.82
3058 3135 1.562475 GGGTGCCCCTGTGAATACTAA 59.438 52.381 3.16 0.00 41.34 2.24
3059 3136 2.025699 GGGTGCCCCTGTGAATACTAAA 60.026 50.000 3.16 0.00 41.34 1.85
3060 3137 3.372675 GGGTGCCCCTGTGAATACTAAAT 60.373 47.826 3.16 0.00 41.34 1.40
3061 3138 3.632145 GGTGCCCCTGTGAATACTAAATG 59.368 47.826 0.00 0.00 0.00 2.32
3062 3139 4.270008 GTGCCCCTGTGAATACTAAATGT 58.730 43.478 0.00 0.00 0.00 2.71
3063 3140 4.705023 GTGCCCCTGTGAATACTAAATGTT 59.295 41.667 0.00 0.00 0.00 2.71
3064 3141 5.185056 GTGCCCCTGTGAATACTAAATGTTT 59.815 40.000 0.00 0.00 0.00 2.83
3065 3142 5.777732 TGCCCCTGTGAATACTAAATGTTTT 59.222 36.000 0.00 0.00 0.00 2.43
3066 3143 6.948886 TGCCCCTGTGAATACTAAATGTTTTA 59.051 34.615 0.00 0.00 0.00 1.52
3067 3144 7.451877 TGCCCCTGTGAATACTAAATGTTTTAA 59.548 33.333 0.00 0.00 0.00 1.52
3068 3145 8.474831 GCCCCTGTGAATACTAAATGTTTTAAT 58.525 33.333 0.00 0.00 0.00 1.40
3080 3157 9.218440 ACTAAATGTTTTAATTGATGGCTTTGG 57.782 29.630 0.00 0.00 0.00 3.28
3081 3158 9.218440 CTAAATGTTTTAATTGATGGCTTTGGT 57.782 29.630 0.00 0.00 0.00 3.67
3083 3160 8.546597 AATGTTTTAATTGATGGCTTTGGTAC 57.453 30.769 0.00 0.00 0.00 3.34
3084 3161 6.153067 TGTTTTAATTGATGGCTTTGGTACG 58.847 36.000 0.00 0.00 0.00 3.67
3085 3162 6.016192 TGTTTTAATTGATGGCTTTGGTACGA 60.016 34.615 0.00 0.00 0.00 3.43
3086 3163 6.576662 TTTAATTGATGGCTTTGGTACGAA 57.423 33.333 0.00 0.00 0.00 3.85
3087 3164 6.576662 TTAATTGATGGCTTTGGTACGAAA 57.423 33.333 2.91 2.91 0.00 3.46
3088 3165 5.659440 AATTGATGGCTTTGGTACGAAAT 57.341 34.783 3.35 0.00 0.00 2.17
3089 3166 5.659440 ATTGATGGCTTTGGTACGAAATT 57.341 34.783 3.35 0.00 0.00 1.82
3090 3167 6.767524 ATTGATGGCTTTGGTACGAAATTA 57.232 33.333 3.35 0.00 0.00 1.40
3091 3168 6.767524 TTGATGGCTTTGGTACGAAATTAT 57.232 33.333 3.35 0.00 0.00 1.28
3092 3169 6.767524 TGATGGCTTTGGTACGAAATTATT 57.232 33.333 3.35 0.00 0.00 1.40
3093 3170 6.791303 TGATGGCTTTGGTACGAAATTATTC 58.209 36.000 3.35 1.27 0.00 1.75
3094 3171 6.601613 TGATGGCTTTGGTACGAAATTATTCT 59.398 34.615 3.35 0.00 33.17 2.40
3095 3172 7.771361 TGATGGCTTTGGTACGAAATTATTCTA 59.229 33.333 3.35 0.00 33.17 2.10
3096 3173 7.925043 TGGCTTTGGTACGAAATTATTCTAA 57.075 32.000 3.35 0.00 33.17 2.10
3097 3174 8.514330 TGGCTTTGGTACGAAATTATTCTAAT 57.486 30.769 3.35 0.00 33.17 1.73
3098 3175 8.962679 TGGCTTTGGTACGAAATTATTCTAATT 58.037 29.630 3.35 0.00 33.17 1.40
3099 3176 9.797556 GGCTTTGGTACGAAATTATTCTAATTT 57.202 29.630 3.35 4.90 33.17 1.82
3119 3196 9.289303 CTAATTTATACAAATGGTGAAGTGTGC 57.711 33.333 0.00 0.00 34.53 4.57
3120 3197 6.892658 TTTATACAAATGGTGAAGTGTGCT 57.107 33.333 0.00 0.00 0.00 4.40
3121 3198 4.771590 ATACAAATGGTGAAGTGTGCTG 57.228 40.909 0.00 0.00 0.00 4.41
3122 3199 2.653726 ACAAATGGTGAAGTGTGCTGA 58.346 42.857 0.00 0.00 0.00 4.26
3123 3200 2.358898 ACAAATGGTGAAGTGTGCTGAC 59.641 45.455 0.00 0.00 0.00 3.51
3124 3201 1.609208 AATGGTGAAGTGTGCTGACC 58.391 50.000 0.00 0.00 0.00 4.02
3125 3202 0.767375 ATGGTGAAGTGTGCTGACCT 59.233 50.000 0.00 0.00 32.19 3.85
3126 3203 1.419381 TGGTGAAGTGTGCTGACCTA 58.581 50.000 0.00 0.00 32.19 3.08
3127 3204 1.070134 TGGTGAAGTGTGCTGACCTAC 59.930 52.381 0.00 0.00 32.19 3.18
3128 3205 1.608283 GGTGAAGTGTGCTGACCTACC 60.608 57.143 0.00 0.00 0.00 3.18
3129 3206 1.070134 GTGAAGTGTGCTGACCTACCA 59.930 52.381 0.00 0.00 0.00 3.25
3130 3207 1.765904 TGAAGTGTGCTGACCTACCAA 59.234 47.619 0.00 0.00 0.00 3.67
3131 3208 2.371841 TGAAGTGTGCTGACCTACCAAT 59.628 45.455 0.00 0.00 0.00 3.16
3132 3209 3.181445 TGAAGTGTGCTGACCTACCAATT 60.181 43.478 0.00 0.00 0.00 2.32
3133 3210 4.041075 TGAAGTGTGCTGACCTACCAATTA 59.959 41.667 0.00 0.00 0.00 1.40
3134 3211 3.939066 AGTGTGCTGACCTACCAATTAC 58.061 45.455 0.00 0.00 0.00 1.89
3135 3212 3.583086 AGTGTGCTGACCTACCAATTACT 59.417 43.478 0.00 0.00 0.00 2.24
3136 3213 4.041691 AGTGTGCTGACCTACCAATTACTT 59.958 41.667 0.00 0.00 0.00 2.24
3137 3214 4.154195 GTGTGCTGACCTACCAATTACTTG 59.846 45.833 0.00 0.00 0.00 3.16
3138 3215 4.041075 TGTGCTGACCTACCAATTACTTGA 59.959 41.667 0.00 0.00 34.04 3.02
3139 3216 5.186198 GTGCTGACCTACCAATTACTTGAT 58.814 41.667 0.00 0.00 34.04 2.57
3140 3217 5.648092 GTGCTGACCTACCAATTACTTGATT 59.352 40.000 0.00 0.00 34.04 2.57
3141 3218 6.821665 GTGCTGACCTACCAATTACTTGATTA 59.178 38.462 0.00 0.00 34.04 1.75
3142 3219 6.821665 TGCTGACCTACCAATTACTTGATTAC 59.178 38.462 0.00 0.00 34.04 1.89
3143 3220 6.821665 GCTGACCTACCAATTACTTGATTACA 59.178 38.462 0.00 0.00 34.04 2.41
3144 3221 7.499232 GCTGACCTACCAATTACTTGATTACAT 59.501 37.037 0.00 0.00 34.04 2.29
3145 3222 9.396022 CTGACCTACCAATTACTTGATTACATT 57.604 33.333 0.00 0.00 34.04 2.71
3146 3223 9.747898 TGACCTACCAATTACTTGATTACATTT 57.252 29.630 0.00 0.00 34.04 2.32
3185 3262 9.449719 AAATACTCCTTATACTCTGTTTTGGTG 57.550 33.333 0.00 0.00 0.00 4.17
3186 3263 5.805728 ACTCCTTATACTCTGTTTTGGTGG 58.194 41.667 0.00 0.00 0.00 4.61
3187 3264 4.585879 TCCTTATACTCTGTTTTGGTGGC 58.414 43.478 0.00 0.00 0.00 5.01
3188 3265 4.288626 TCCTTATACTCTGTTTTGGTGGCT 59.711 41.667 0.00 0.00 0.00 4.75
3189 3266 5.486063 TCCTTATACTCTGTTTTGGTGGCTA 59.514 40.000 0.00 0.00 0.00 3.93
3190 3267 5.585047 CCTTATACTCTGTTTTGGTGGCTAC 59.415 44.000 0.00 0.00 0.00 3.58
3191 3268 4.910458 ATACTCTGTTTTGGTGGCTACT 57.090 40.909 0.00 0.00 0.00 2.57
3192 3269 3.577805 ACTCTGTTTTGGTGGCTACTT 57.422 42.857 0.00 0.00 0.00 2.24
3193 3270 4.699925 ACTCTGTTTTGGTGGCTACTTA 57.300 40.909 0.00 0.00 0.00 2.24
3194 3271 5.242795 ACTCTGTTTTGGTGGCTACTTAT 57.757 39.130 0.00 0.00 0.00 1.73
3195 3272 5.246307 ACTCTGTTTTGGTGGCTACTTATC 58.754 41.667 0.00 0.00 0.00 1.75
3196 3273 4.585879 TCTGTTTTGGTGGCTACTTATCC 58.414 43.478 0.00 0.00 0.00 2.59
3197 3274 4.288626 TCTGTTTTGGTGGCTACTTATCCT 59.711 41.667 0.00 0.00 0.00 3.24
3198 3275 4.331968 TGTTTTGGTGGCTACTTATCCTG 58.668 43.478 0.00 0.00 0.00 3.86
3199 3276 4.042311 TGTTTTGGTGGCTACTTATCCTGA 59.958 41.667 0.00 0.00 0.00 3.86
3200 3277 5.193679 GTTTTGGTGGCTACTTATCCTGAT 58.806 41.667 0.00 0.00 0.00 2.90
3201 3278 4.689612 TTGGTGGCTACTTATCCTGATC 57.310 45.455 0.00 0.00 0.00 2.92
3202 3279 3.928754 TGGTGGCTACTTATCCTGATCT 58.071 45.455 0.00 0.00 0.00 2.75
3203 3280 4.298626 TGGTGGCTACTTATCCTGATCTT 58.701 43.478 0.00 0.00 0.00 2.40
3204 3281 4.345257 TGGTGGCTACTTATCCTGATCTTC 59.655 45.833 0.00 0.00 0.00 2.87
3205 3282 4.345257 GGTGGCTACTTATCCTGATCTTCA 59.655 45.833 0.00 0.00 0.00 3.02
3206 3283 5.012561 GGTGGCTACTTATCCTGATCTTCAT 59.987 44.000 0.00 0.00 0.00 2.57
3207 3284 6.162777 GTGGCTACTTATCCTGATCTTCATC 58.837 44.000 0.00 0.00 0.00 2.92
3208 3285 5.840693 TGGCTACTTATCCTGATCTTCATCA 59.159 40.000 0.00 0.00 36.62 3.07
3220 3297 6.490241 TGATCTTCATCAGATAGAGGCAAA 57.510 37.500 0.00 0.00 42.92 3.68
3221 3298 7.075851 TGATCTTCATCAGATAGAGGCAAAT 57.924 36.000 0.00 0.00 42.92 2.32
3222 3299 7.515586 TGATCTTCATCAGATAGAGGCAAATT 58.484 34.615 0.00 0.00 42.92 1.82
3223 3300 8.654094 TGATCTTCATCAGATAGAGGCAAATTA 58.346 33.333 0.00 0.00 42.92 1.40
3224 3301 9.499479 GATCTTCATCAGATAGAGGCAAATTAA 57.501 33.333 0.00 0.00 42.92 1.40
3226 3303 9.281371 TCTTCATCAGATAGAGGCAAATTAATG 57.719 33.333 0.00 0.00 0.00 1.90
3227 3304 8.985315 TTCATCAGATAGAGGCAAATTAATGT 57.015 30.769 0.00 0.00 0.00 2.71
3228 3305 8.985315 TCATCAGATAGAGGCAAATTAATGTT 57.015 30.769 0.00 0.00 0.00 2.71
3229 3306 9.412460 TCATCAGATAGAGGCAAATTAATGTTT 57.588 29.630 0.00 0.00 0.00 2.83
3232 3309 9.241919 TCAGATAGAGGCAAATTAATGTTTTGA 57.758 29.630 4.56 0.00 36.40 2.69
3233 3310 9.294030 CAGATAGAGGCAAATTAATGTTTTGAC 57.706 33.333 4.56 1.65 41.49 3.18
3234 3311 8.470002 AGATAGAGGCAAATTAATGTTTTGACC 58.530 33.333 2.84 4.58 42.01 4.02
3235 3312 6.670695 AGAGGCAAATTAATGTTTTGACCT 57.329 33.333 12.10 12.10 42.01 3.85
3236 3313 6.458210 AGAGGCAAATTAATGTTTTGACCTG 58.542 36.000 14.97 0.00 42.01 4.00
3237 3314 6.041979 AGAGGCAAATTAATGTTTTGACCTGT 59.958 34.615 14.97 10.99 42.01 4.00
3238 3315 5.990996 AGGCAAATTAATGTTTTGACCTGTG 59.009 36.000 11.74 0.00 42.01 3.66
3239 3316 5.179182 GGCAAATTAATGTTTTGACCTGTGG 59.821 40.000 4.56 0.00 36.32 4.17
3240 3317 5.179182 GCAAATTAATGTTTTGACCTGTGGG 59.821 40.000 4.56 0.00 36.40 4.61
3241 3318 6.520272 CAAATTAATGTTTTGACCTGTGGGA 58.480 36.000 0.00 0.00 36.40 4.37
3242 3319 5.982890 ATTAATGTTTTGACCTGTGGGAG 57.017 39.130 0.00 0.00 36.25 4.30
3243 3320 1.620822 ATGTTTTGACCTGTGGGAGC 58.379 50.000 0.00 0.00 36.25 4.70
3244 3321 0.550914 TGTTTTGACCTGTGGGAGCT 59.449 50.000 0.00 0.00 36.25 4.09
3245 3322 1.771854 TGTTTTGACCTGTGGGAGCTA 59.228 47.619 0.00 0.00 36.25 3.32
3246 3323 2.375174 TGTTTTGACCTGTGGGAGCTAT 59.625 45.455 0.00 0.00 36.25 2.97
3247 3324 3.010420 GTTTTGACCTGTGGGAGCTATC 58.990 50.000 0.00 0.00 36.25 2.08
3248 3325 1.951209 TTGACCTGTGGGAGCTATCA 58.049 50.000 0.00 0.00 36.25 2.15
3249 3326 1.951209 TGACCTGTGGGAGCTATCAA 58.049 50.000 0.00 0.00 36.25 2.57
3250 3327 2.481441 TGACCTGTGGGAGCTATCAAT 58.519 47.619 0.00 0.00 36.25 2.57
3251 3328 2.846206 TGACCTGTGGGAGCTATCAATT 59.154 45.455 0.00 0.00 36.25 2.32
3252 3329 4.037222 TGACCTGTGGGAGCTATCAATTA 58.963 43.478 0.00 0.00 36.25 1.40
3253 3330 4.101585 TGACCTGTGGGAGCTATCAATTAG 59.898 45.833 0.00 0.00 36.25 1.73
3254 3331 4.298626 ACCTGTGGGAGCTATCAATTAGA 58.701 43.478 0.00 0.00 36.25 2.10
3255 3332 4.101741 ACCTGTGGGAGCTATCAATTAGAC 59.898 45.833 0.00 0.00 36.25 2.59
3256 3333 4.346418 CCTGTGGGAGCTATCAATTAGACT 59.654 45.833 0.00 0.00 33.58 3.24
3257 3334 5.540337 CCTGTGGGAGCTATCAATTAGACTA 59.460 44.000 0.00 0.00 33.58 2.59
3258 3335 6.295011 CCTGTGGGAGCTATCAATTAGACTAG 60.295 46.154 0.00 0.00 33.58 2.57
3259 3336 5.540337 TGTGGGAGCTATCAATTAGACTAGG 59.460 44.000 0.00 0.00 0.00 3.02
3260 3337 5.540719 GTGGGAGCTATCAATTAGACTAGGT 59.459 44.000 0.00 0.00 0.00 3.08
3261 3338 6.042208 GTGGGAGCTATCAATTAGACTAGGTT 59.958 42.308 0.00 0.00 0.00 3.50
3262 3339 7.232941 GTGGGAGCTATCAATTAGACTAGGTTA 59.767 40.741 0.00 0.00 0.00 2.85
3263 3340 7.956315 TGGGAGCTATCAATTAGACTAGGTTAT 59.044 37.037 0.00 0.00 0.00 1.89
3264 3341 8.254508 GGGAGCTATCAATTAGACTAGGTTATG 58.745 40.741 0.00 0.00 0.00 1.90
3265 3342 9.026121 GGAGCTATCAATTAGACTAGGTTATGA 57.974 37.037 0.00 0.00 0.00 2.15
3267 3344 9.594936 AGCTATCAATTAGACTAGGTTATGAGT 57.405 33.333 0.00 0.00 0.00 3.41
3271 3348 8.707796 TCAATTAGACTAGGTTATGAGTAGGG 57.292 38.462 0.00 0.00 0.00 3.53
3272 3349 7.728981 TCAATTAGACTAGGTTATGAGTAGGGG 59.271 40.741 0.00 0.00 0.00 4.79
3273 3350 6.603110 TTAGACTAGGTTATGAGTAGGGGT 57.397 41.667 0.00 0.00 0.00 4.95
3274 3351 4.805744 AGACTAGGTTATGAGTAGGGGTG 58.194 47.826 0.00 0.00 0.00 4.61
3275 3352 3.306613 ACTAGGTTATGAGTAGGGGTGC 58.693 50.000 0.00 0.00 0.00 5.01
3276 3353 1.508256 AGGTTATGAGTAGGGGTGCC 58.492 55.000 0.00 0.00 0.00 5.01
3277 3354 0.472898 GGTTATGAGTAGGGGTGCCC 59.527 60.000 0.00 0.00 45.90 5.36
3513 3590 4.532834 TGAGGTTCAGCTGGTAAAAACTT 58.467 39.130 15.13 6.72 0.00 2.66
3594 3671 5.879223 TGTAGTTTTTGTACCTTCGGTGAAA 59.121 36.000 0.00 0.00 36.19 2.69
3640 3720 6.904463 TGGAATGCAAACATGATATGCTAT 57.096 33.333 18.00 10.05 40.66 2.97
3644 3724 9.048446 GGAATGCAAACATGATATGCTATTTTT 57.952 29.630 18.00 8.15 40.66 1.94
3933 4015 7.624360 ATTCTGGAGTCGCAAACAATTATTA 57.376 32.000 0.00 0.00 0.00 0.98
4099 4465 9.941664 CTTCAGCATATATTTAGTTTGTTCCAG 57.058 33.333 0.00 0.00 0.00 3.86
4133 4499 1.968493 GCCCGATCCATAGTTCCTGTA 59.032 52.381 0.00 0.00 0.00 2.74
4150 4516 7.732593 AGTTCCTGTAGATATCTATTTCTGCCT 59.267 37.037 15.43 4.74 0.00 4.75
4153 4519 7.730332 TCCTGTAGATATCTATTTCTGCCTTCA 59.270 37.037 15.43 4.36 0.00 3.02
4322 4688 2.182030 GAGGCGGACACTTCCTCG 59.818 66.667 0.00 0.00 40.23 4.63
4356 4722 7.212976 CAGGTATGTGCATCATTCTAGTTACT 58.787 38.462 7.02 0.00 37.91 2.24
4488 4854 4.293494 TGATAGATCCATCCCTGGCTATC 58.707 47.826 0.00 0.00 42.80 2.08
4691 5057 1.595109 CGTGCAGTCAGTTCAGCCA 60.595 57.895 0.00 0.00 0.00 4.75
4757 5123 4.278956 GGCGTCTCCGACAACATT 57.721 55.556 0.00 0.00 43.43 2.71
4868 5239 3.886505 GGTTAAACCTTCACATGACCACA 59.113 43.478 0.00 0.00 34.73 4.17
4870 5241 1.981256 AACCTTCACATGACCACACC 58.019 50.000 0.00 0.00 0.00 4.16
4953 5344 2.325082 CCAGTTCCGCTTGTTCCGG 61.325 63.158 0.00 0.00 46.88 5.14
4975 5366 1.075659 GCTGGGAGGCTGGAAAAGT 59.924 57.895 0.00 0.00 0.00 2.66
5013 5410 1.686355 TCATCGGCACAAGTTGGTTT 58.314 45.000 7.96 0.00 0.00 3.27
5019 5416 1.686052 GGCACAAGTTGGTTTGATGGA 59.314 47.619 7.96 0.00 0.00 3.41
5086 5483 9.241317 CTGCAAAATGTATCTATTGATTGGTTC 57.759 33.333 0.00 0.00 34.32 3.62
5155 5552 3.822594 TGTTTGTGATTCGATTTCGGG 57.177 42.857 0.00 0.00 40.29 5.14
5198 5596 1.734388 GCTTTTGTGAAGGGGCACGT 61.734 55.000 0.00 0.00 41.63 4.49
5222 5620 0.392461 TATCGCAAGGTGGTTCAGGC 60.392 55.000 0.00 0.00 38.47 4.85
5234 5632 2.268076 TTCAGGCGGCAAGAAAGGC 61.268 57.895 13.08 0.00 0.00 4.35
5347 5749 8.802267 TCATTTTACATTTTCCCTAGAAACAGG 58.198 33.333 0.00 0.00 41.69 4.00
5456 5860 7.290813 AGAGCCCTTATTTACATTTTCCCTAG 58.709 38.462 0.00 0.00 0.00 3.02
5461 5865 9.475620 CCCTTATTTACATTTTCCCTAGAAACT 57.524 33.333 0.00 0.00 41.69 2.66
5587 5994 5.006386 CACTGGCACTTTCTTTTAGGAGAT 58.994 41.667 0.00 0.00 0.00 2.75
5588 5995 5.006386 ACTGGCACTTTCTTTTAGGAGATG 58.994 41.667 0.00 0.00 0.00 2.90
5669 6077 5.868801 CACGCCAAATCTGGATTAATTTTGT 59.131 36.000 0.00 0.00 46.92 2.83
5699 6107 2.121963 TTGACCCAGAGGCCCAGT 60.122 61.111 0.00 0.00 36.11 4.00
5700 6108 1.774217 TTGACCCAGAGGCCCAGTT 60.774 57.895 0.00 0.00 36.11 3.16
5702 6110 2.936032 ACCCAGAGGCCCAGTTCC 60.936 66.667 0.00 0.00 36.11 3.62
5703 6111 3.732849 CCCAGAGGCCCAGTTCCC 61.733 72.222 0.00 0.00 0.00 3.97
5704 6112 2.935481 CCAGAGGCCCAGTTCCCA 60.935 66.667 0.00 0.00 0.00 4.37
5705 6113 2.311854 CCAGAGGCCCAGTTCCCAT 61.312 63.158 0.00 0.00 0.00 4.00
5706 6114 1.077212 CAGAGGCCCAGTTCCCATG 60.077 63.158 0.00 0.00 0.00 3.66
5707 6115 2.276740 GAGGCCCAGTTCCCATGG 59.723 66.667 4.14 4.14 37.58 3.66
5708 6116 2.204291 AGGCCCAGTTCCCATGGA 60.204 61.111 15.22 0.00 40.51 3.41
5709 6117 1.856873 AGGCCCAGTTCCCATGGAA 60.857 57.895 15.22 2.63 40.51 3.53
5721 6129 1.396653 CCATGGAAGCAATCAGGACC 58.603 55.000 5.56 0.00 0.00 4.46
5756 6164 1.437986 GAGGTCCATCCCGTCGAAG 59.562 63.158 0.00 0.00 36.75 3.79
5795 6203 2.043248 GTCCTCTCCGGTAGCCCA 60.043 66.667 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.179599 GAGAGGGGAGGGAGGGGG 62.180 77.778 0.00 0.00 0.00 5.40
2 3 4.179599 GGAGAGGGGAGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
3 4 3.039526 AGGAGAGGGGAGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
4 5 2.612251 GAGGAGAGGGGAGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
5 6 2.612251 GGAGGAGAGGGGAGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
6 7 3.036959 GGGAGGAGAGGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
7 8 4.548513 CGGGAGGAGAGGGGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
9 10 4.465446 TGCGGGAGGAGAGGGGAG 62.465 72.222 0.00 0.00 0.00 4.30
35 36 0.746204 GTCCTTCCTTGGCTAGCTGC 60.746 60.000 15.72 0.00 41.94 5.25
36 37 0.908198 AGTCCTTCCTTGGCTAGCTG 59.092 55.000 15.72 5.36 0.00 4.24
37 38 1.199615 GAGTCCTTCCTTGGCTAGCT 58.800 55.000 15.72 0.00 0.00 3.32
38 39 0.179097 CGAGTCCTTCCTTGGCTAGC 60.179 60.000 6.04 6.04 0.00 3.42
39 40 0.179097 GCGAGTCCTTCCTTGGCTAG 60.179 60.000 0.00 0.00 0.00 3.42
40 41 1.614241 GGCGAGTCCTTCCTTGGCTA 61.614 60.000 0.00 0.00 38.16 3.93
41 42 2.665603 GCGAGTCCTTCCTTGGCT 59.334 61.111 0.00 0.00 0.00 4.75
42 43 2.436824 GGCGAGTCCTTCCTTGGC 60.437 66.667 0.00 0.00 34.64 4.52
43 44 2.125512 CGGCGAGTCCTTCCTTGG 60.126 66.667 0.00 0.00 0.00 3.61
44 45 1.446272 GACGGCGAGTCCTTCCTTG 60.446 63.158 16.62 0.00 43.95 3.61
45 46 2.971452 GACGGCGAGTCCTTCCTT 59.029 61.111 16.62 0.00 43.95 3.36
53 54 2.683933 AAGATGGGGACGGCGAGT 60.684 61.111 16.62 0.00 0.00 4.18
54 55 2.107141 GAAGATGGGGACGGCGAG 59.893 66.667 16.62 0.00 0.00 5.03
55 56 3.467226 GGAAGATGGGGACGGCGA 61.467 66.667 16.62 0.00 0.00 5.54
56 57 2.925162 GAAGGAAGATGGGGACGGCG 62.925 65.000 4.80 4.80 0.00 6.46
57 58 1.153147 GAAGGAAGATGGGGACGGC 60.153 63.158 0.00 0.00 0.00 5.68
58 59 1.527370 GGAAGGAAGATGGGGACGG 59.473 63.158 0.00 0.00 0.00 4.79
59 60 1.527370 GGGAAGGAAGATGGGGACG 59.473 63.158 0.00 0.00 0.00 4.79
60 61 0.919289 TGGGGAAGGAAGATGGGGAC 60.919 60.000 0.00 0.00 0.00 4.46
61 62 0.919289 GTGGGGAAGGAAGATGGGGA 60.919 60.000 0.00 0.00 0.00 4.81
62 63 1.615262 GTGGGGAAGGAAGATGGGG 59.385 63.158 0.00 0.00 0.00 4.96
63 64 1.615262 GGTGGGGAAGGAAGATGGG 59.385 63.158 0.00 0.00 0.00 4.00
64 65 1.615262 GGGTGGGGAAGGAAGATGG 59.385 63.158 0.00 0.00 0.00 3.51
65 66 1.615262 GGGGTGGGGAAGGAAGATG 59.385 63.158 0.00 0.00 0.00 2.90
66 67 2.001269 CGGGGTGGGGAAGGAAGAT 61.001 63.158 0.00 0.00 0.00 2.40
67 68 2.609610 CGGGGTGGGGAAGGAAGA 60.610 66.667 0.00 0.00 0.00 2.87
181 182 4.215742 TTACCCGCCTGCGATCCG 62.216 66.667 13.94 0.00 42.83 4.18
182 183 2.280186 CTTACCCGCCTGCGATCC 60.280 66.667 13.94 0.00 42.83 3.36
183 184 2.967615 GCTTACCCGCCTGCGATC 60.968 66.667 13.94 0.00 42.83 3.69
184 185 3.470888 AGCTTACCCGCCTGCGAT 61.471 61.111 13.94 3.29 42.83 4.58
201 222 0.252742 GGAGAAGGGGAGAAGGGTCA 60.253 60.000 0.00 0.00 0.00 4.02
230 254 1.988956 CAGCAGGAGAGCAGGGACT 60.989 63.158 0.00 0.00 43.88 3.85
231 255 2.583520 CAGCAGGAGAGCAGGGAC 59.416 66.667 0.00 0.00 36.85 4.46
232 256 3.397439 GCAGCAGGAGAGCAGGGA 61.397 66.667 0.00 0.00 36.85 4.20
233 257 3.400928 AGCAGCAGGAGAGCAGGG 61.401 66.667 0.00 0.00 36.85 4.45
234 258 2.125065 CAGCAGCAGGAGAGCAGG 60.125 66.667 0.00 0.00 36.85 4.85
235 259 2.820479 GCAGCAGCAGGAGAGCAG 60.820 66.667 0.00 0.00 41.58 4.24
236 260 4.405671 GGCAGCAGCAGGAGAGCA 62.406 66.667 2.65 0.00 44.61 4.26
261 285 1.901948 CAGCTGGGGCATAGCATGG 60.902 63.158 5.57 0.95 43.53 3.66
262 286 1.901948 CCAGCTGGGGCATAGCATG 60.902 63.158 26.14 8.93 43.53 4.06
263 287 2.519441 CCAGCTGGGGCATAGCAT 59.481 61.111 26.14 0.00 43.53 3.79
301 325 0.030908 GAATCGAGCCAGTCCTACGG 59.969 60.000 0.00 0.00 0.00 4.02
302 326 0.030908 GGAATCGAGCCAGTCCTACG 59.969 60.000 2.43 0.00 0.00 3.51
305 329 1.258445 AACGGAATCGAGCCAGTCCT 61.258 55.000 7.74 0.00 40.11 3.85
307 331 1.000145 GAAACGGAATCGAGCCAGTC 59.000 55.000 7.74 0.00 40.11 3.51
308 332 0.736325 CGAAACGGAATCGAGCCAGT 60.736 55.000 7.74 4.04 42.76 4.00
310 334 1.011968 CACGAAACGGAATCGAGCCA 61.012 55.000 12.63 0.00 42.76 4.75
313 337 0.366871 CAGCACGAAACGGAATCGAG 59.633 55.000 12.63 6.76 42.76 4.04
333 358 0.457443 CATCGTCCACTAGCAGCAGA 59.543 55.000 0.00 0.00 0.00 4.26
343 368 4.210120 GCAATTGACTAGATCATCGTCCAC 59.790 45.833 10.34 0.00 37.11 4.02
346 371 3.426859 CCGCAATTGACTAGATCATCGTC 59.573 47.826 10.34 0.00 37.11 4.20
373 408 1.815003 AGTAGGACGAACAGGTTACGG 59.185 52.381 0.00 0.00 0.00 4.02
456 503 7.176490 GGAGACATGACCTACCTAGTACATAT 58.824 42.308 0.00 0.00 0.00 1.78
457 504 6.540995 GGAGACATGACCTACCTAGTACATA 58.459 44.000 0.00 0.00 0.00 2.29
458 505 5.386924 GGAGACATGACCTACCTAGTACAT 58.613 45.833 0.00 0.00 0.00 2.29
459 506 4.685302 CGGAGACATGACCTACCTAGTACA 60.685 50.000 0.00 0.00 0.00 2.90
460 507 3.814283 CGGAGACATGACCTACCTAGTAC 59.186 52.174 0.00 0.00 0.00 2.73
461 508 3.713248 TCGGAGACATGACCTACCTAGTA 59.287 47.826 0.00 0.00 0.00 1.82
462 509 2.508716 TCGGAGACATGACCTACCTAGT 59.491 50.000 0.00 0.00 0.00 2.57
463 510 3.142951 CTCGGAGACATGACCTACCTAG 58.857 54.545 0.00 0.00 0.00 3.02
499 546 0.744771 TAACAGCAACACGCACCACA 60.745 50.000 0.00 0.00 46.13 4.17
576 623 0.815615 CCGCAGCCCCATTCTAACTC 60.816 60.000 0.00 0.00 0.00 3.01
577 624 1.224592 CCGCAGCCCCATTCTAACT 59.775 57.895 0.00 0.00 0.00 2.24
578 625 0.679960 AACCGCAGCCCCATTCTAAC 60.680 55.000 0.00 0.00 0.00 2.34
580 627 1.223487 GAACCGCAGCCCCATTCTA 59.777 57.895 0.00 0.00 0.00 2.10
581 628 2.044946 GAACCGCAGCCCCATTCT 60.045 61.111 0.00 0.00 0.00 2.40
585 635 2.424842 AAATGAGAACCGCAGCCCCA 62.425 55.000 0.00 0.00 0.00 4.96
594 644 2.686915 CCAGGCATCAGAAATGAGAACC 59.313 50.000 0.00 0.00 0.00 3.62
595 645 3.614092 TCCAGGCATCAGAAATGAGAAC 58.386 45.455 0.00 0.00 0.00 3.01
652 702 0.460811 ATGTGTGCGTGCATCGATCT 60.461 50.000 11.94 0.00 42.86 2.75
672 722 6.142817 CAGGTTACAAGCAAACACAATAGAC 58.857 40.000 0.00 0.00 0.00 2.59
674 724 6.072112 ACAGGTTACAAGCAAACACAATAG 57.928 37.500 0.00 0.00 0.00 1.73
676 726 5.337578 AACAGGTTACAAGCAAACACAAT 57.662 34.783 0.00 0.00 0.00 2.71
677 727 4.673061 CGAACAGGTTACAAGCAAACACAA 60.673 41.667 0.00 0.00 0.00 3.33
678 728 3.181505 CGAACAGGTTACAAGCAAACACA 60.182 43.478 0.00 0.00 0.00 3.72
679 729 3.181504 ACGAACAGGTTACAAGCAAACAC 60.182 43.478 0.00 0.00 0.00 3.32
682 732 2.614983 GGACGAACAGGTTACAAGCAAA 59.385 45.455 0.00 0.00 0.00 3.68
738 790 2.089980 ACTTAGCTCAGCCTGCAAATG 58.910 47.619 0.00 0.00 0.00 2.32
740 792 1.349026 AGACTTAGCTCAGCCTGCAAA 59.651 47.619 0.00 0.00 0.00 3.68
743 795 1.206849 AGAAGACTTAGCTCAGCCTGC 59.793 52.381 0.00 0.00 0.00 4.85
744 796 2.233431 ACAGAAGACTTAGCTCAGCCTG 59.767 50.000 0.00 0.00 0.00 4.85
746 798 2.615869 CACAGAAGACTTAGCTCAGCC 58.384 52.381 0.00 0.00 0.00 4.85
750 802 3.791245 CCATCCACAGAAGACTTAGCTC 58.209 50.000 0.00 0.00 0.00 4.09
759 811 2.365617 ACCTATACGCCATCCACAGAAG 59.634 50.000 0.00 0.00 0.00 2.85
760 812 2.394632 ACCTATACGCCATCCACAGAA 58.605 47.619 0.00 0.00 0.00 3.02
773 825 7.826744 GGTACATGACCTACCTAGTACCTATAC 59.173 44.444 0.00 0.00 45.89 1.47
811 864 3.389983 AGAGGTTAACTAACACCAGCACA 59.610 43.478 5.42 0.00 37.92 4.57
863 923 6.090088 CGAACTTAGAAGAACATGGTCAGAAG 59.910 42.308 14.46 12.06 0.00 2.85
887 947 0.465097 ATTGCAGCCTCCCTCATTCG 60.465 55.000 0.00 0.00 0.00 3.34
891 951 0.034767 CAGAATTGCAGCCTCCCTCA 60.035 55.000 0.00 0.00 0.00 3.86
894 954 0.034670 AGTCAGAATTGCAGCCTCCC 60.035 55.000 0.00 0.00 0.00 4.30
923 983 5.066117 TCCTACTAGTACAATCAGACAAGCG 59.934 44.000 0.00 0.00 0.00 4.68
937 997 5.570034 GCACCCACAAAATGTCCTACTAGTA 60.570 44.000 1.89 1.89 0.00 1.82
939 999 3.689649 GCACCCACAAAATGTCCTACTAG 59.310 47.826 0.00 0.00 0.00 2.57
940 1000 3.560453 GGCACCCACAAAATGTCCTACTA 60.560 47.826 0.00 0.00 0.00 1.82
941 1001 2.514803 GCACCCACAAAATGTCCTACT 58.485 47.619 0.00 0.00 0.00 2.57
950 1010 2.048601 GCATCAGGCACCCACAAAA 58.951 52.632 0.00 0.00 43.97 2.44
951 1011 3.776158 GCATCAGGCACCCACAAA 58.224 55.556 0.00 0.00 43.97 2.83
970 1030 3.301352 GCATGTGTGCGTCAATCAG 57.699 52.632 0.00 0.00 42.28 2.90
1032 1092 1.072331 GATGGCGTAGGATTGGATGGT 59.928 52.381 0.00 0.00 0.00 3.55
1053 1116 1.901948 AGCGTCTCCCTCACGTGAA 60.902 57.895 20.49 3.77 39.54 3.18
1056 1119 4.057428 GCAGCGTCTCCCTCACGT 62.057 66.667 0.00 0.00 39.54 4.49
1089 1152 1.485066 GGGGCGGAAGAAGTAGATGAA 59.515 52.381 0.00 0.00 0.00 2.57
1090 1153 1.120530 GGGGCGGAAGAAGTAGATGA 58.879 55.000 0.00 0.00 0.00 2.92
1091 1154 0.830648 TGGGGCGGAAGAAGTAGATG 59.169 55.000 0.00 0.00 0.00 2.90
1092 1155 1.123928 CTGGGGCGGAAGAAGTAGAT 58.876 55.000 0.00 0.00 0.00 1.98
1093 1156 0.040646 TCTGGGGCGGAAGAAGTAGA 59.959 55.000 0.00 0.00 0.00 2.59
1094 1157 0.461961 CTCTGGGGCGGAAGAAGTAG 59.538 60.000 0.00 0.00 0.00 2.57
1095 1158 0.976073 CCTCTGGGGCGGAAGAAGTA 60.976 60.000 0.00 0.00 0.00 2.24
1096 1159 2.294078 CCTCTGGGGCGGAAGAAGT 61.294 63.158 0.00 0.00 0.00 3.01
1108 1171 0.325110 TCCTTCCTCTGCTCCTCTGG 60.325 60.000 0.00 0.00 0.00 3.86
1132 1195 3.741476 CTTGCACTGCTTCGGGCC 61.741 66.667 1.98 0.00 40.92 5.80
1152 1215 0.030101 GAACGCTGGAGAGGATCGAG 59.970 60.000 0.00 0.00 42.67 4.04
1155 1218 1.107114 TGAGAACGCTGGAGAGGATC 58.893 55.000 0.00 0.00 0.00 3.36
1164 1227 0.994995 CGAAGATGGTGAGAACGCTG 59.005 55.000 0.00 0.00 0.00 5.18
1245 1308 0.537371 CAAACCGCCTCAGAACCCTT 60.537 55.000 0.00 0.00 0.00 3.95
1327 1390 5.452078 TTGTAGCATTTTCCAAGGAACTG 57.548 39.130 0.00 3.91 40.86 3.16
1328 1391 4.021981 GCTTGTAGCATTTTCCAAGGAACT 60.022 41.667 0.00 0.00 41.89 3.01
1425 1488 5.093236 TCCTGTAGGTGATCCATATCCTT 57.907 43.478 0.00 0.00 36.34 3.36
1429 1492 5.227593 ACCTTTCCTGTAGGTGATCCATAT 58.772 41.667 0.00 0.00 44.25 1.78
1518 1581 1.086067 ATCATGTCAACAGCTCGCGG 61.086 55.000 6.13 0.00 0.00 6.46
1519 1582 0.299895 GATCATGTCAACAGCTCGCG 59.700 55.000 0.00 0.00 0.00 5.87
1683 1746 0.605083 CTACAGCAGCAGTGGTCAGA 59.395 55.000 0.00 0.00 29.64 3.27
1808 1872 3.546724 TGAGATCAGAGTAGGGAAGTCG 58.453 50.000 0.00 0.00 32.30 4.18
1861 1925 8.926710 CCTACTGTAACTGAATAGAAACACTTG 58.073 37.037 0.00 0.00 0.00 3.16
1894 1958 8.502105 ACCCTACATTAAGAATTAAAAGACCG 57.498 34.615 0.00 0.00 44.76 4.79
1964 2028 8.118976 CCGAACAGGTGTAAGATCCTTATATA 57.881 38.462 0.00 0.00 34.51 0.86
1968 2032 4.730949 CCGAACAGGTGTAAGATCCTTA 57.269 45.455 0.00 0.00 34.51 2.69
2001 2065 0.449388 GTGAATGGAGAAAGCGCAGG 59.551 55.000 11.47 0.00 0.00 4.85
2167 2231 2.803956 TCACCCGAGACAACATAGAGT 58.196 47.619 0.00 0.00 0.00 3.24
2176 2240 1.482182 CCATCTTCATCACCCGAGACA 59.518 52.381 0.00 0.00 0.00 3.41
2218 2282 1.125384 GCAGCAACATCAATGCAAACG 59.875 47.619 0.00 0.00 46.22 3.60
2399 2465 8.865090 CCTAGTTTTACTCAGGATGACTATCAT 58.135 37.037 0.00 0.00 42.56 2.45
2443 2512 1.435256 AACTGGTAGGTCAGCAAGGT 58.565 50.000 0.00 0.00 38.26 3.50
2501 2570 9.593134 AGATTATAAGAAGTTAAGAGCAGTGTG 57.407 33.333 0.00 0.00 0.00 3.82
2544 2613 8.670521 TGCCTCTATATGATTAAGATCAGGAA 57.329 34.615 0.00 0.00 45.01 3.36
2570 2645 5.221441 GCTGTGAAGGGTTGAAAGGTTAATT 60.221 40.000 0.00 0.00 0.00 1.40
2574 2649 2.031870 GCTGTGAAGGGTTGAAAGGTT 58.968 47.619 0.00 0.00 0.00 3.50
2576 2651 1.986882 AGCTGTGAAGGGTTGAAAGG 58.013 50.000 0.00 0.00 0.00 3.11
2580 2655 3.327757 AGTTGATAGCTGTGAAGGGTTGA 59.672 43.478 0.00 0.00 0.00 3.18
2584 2659 2.237143 TCCAGTTGATAGCTGTGAAGGG 59.763 50.000 0.00 0.00 32.41 3.95
2603 2678 3.958798 TGCATAACCTAGTGTCCTAGTCC 59.041 47.826 0.00 0.00 39.29 3.85
2689 2766 1.001181 CACCATGGCAGGAAAAGGTTG 59.999 52.381 13.04 0.00 0.00 3.77
2729 2806 7.047460 TGTATTCCTAGTTTTACGGAGGATC 57.953 40.000 0.00 0.00 35.82 3.36
2736 2813 8.259049 TCACCATTTGTATTCCTAGTTTTACG 57.741 34.615 0.00 0.00 0.00 3.18
2771 2848 9.832445 AATGTAATCAAGTAATTCGTAGGTCAT 57.168 29.630 0.00 0.00 0.00 3.06
2813 2890 6.817140 CCACCAAAACAGAGTATAAGGAGTAC 59.183 42.308 0.00 0.00 0.00 2.73
2859 2936 5.106475 GGCACTTCACCATTTGTATTCGTAA 60.106 40.000 0.00 0.00 0.00 3.18
2862 2939 3.440173 AGGCACTTCACCATTTGTATTCG 59.560 43.478 0.00 0.00 27.25 3.34
2933 3010 3.694566 GCCACCAAAACAGAGTATAAGGG 59.305 47.826 0.00 0.00 0.00 3.95
3054 3131 9.218440 CCAAAGCCATCAATTAAAACATTTAGT 57.782 29.630 0.00 0.00 0.00 2.24
3055 3132 9.218440 ACCAAAGCCATCAATTAAAACATTTAG 57.782 29.630 0.00 0.00 0.00 1.85
3057 3134 8.998377 GTACCAAAGCCATCAATTAAAACATTT 58.002 29.630 0.00 0.00 0.00 2.32
3058 3135 7.330700 CGTACCAAAGCCATCAATTAAAACATT 59.669 33.333 0.00 0.00 0.00 2.71
3059 3136 6.811170 CGTACCAAAGCCATCAATTAAAACAT 59.189 34.615 0.00 0.00 0.00 2.71
3060 3137 6.016192 TCGTACCAAAGCCATCAATTAAAACA 60.016 34.615 0.00 0.00 0.00 2.83
3061 3138 6.383415 TCGTACCAAAGCCATCAATTAAAAC 58.617 36.000 0.00 0.00 0.00 2.43
3062 3139 6.576662 TCGTACCAAAGCCATCAATTAAAA 57.423 33.333 0.00 0.00 0.00 1.52
3063 3140 6.576662 TTCGTACCAAAGCCATCAATTAAA 57.423 33.333 0.00 0.00 0.00 1.52
3064 3141 6.576662 TTTCGTACCAAAGCCATCAATTAA 57.423 33.333 0.00 0.00 0.00 1.40
3065 3142 6.767524 ATTTCGTACCAAAGCCATCAATTA 57.232 33.333 0.00 0.00 0.00 1.40
3066 3143 5.659440 ATTTCGTACCAAAGCCATCAATT 57.341 34.783 0.00 0.00 0.00 2.32
3067 3144 5.659440 AATTTCGTACCAAAGCCATCAAT 57.341 34.783 0.00 0.00 0.00 2.57
3068 3145 6.767524 ATAATTTCGTACCAAAGCCATCAA 57.232 33.333 0.00 0.00 0.00 2.57
3069 3146 6.601613 AGAATAATTTCGTACCAAAGCCATCA 59.398 34.615 0.00 0.00 36.93 3.07
3070 3147 7.027778 AGAATAATTTCGTACCAAAGCCATC 57.972 36.000 0.00 0.00 36.93 3.51
3071 3148 8.514330 TTAGAATAATTTCGTACCAAAGCCAT 57.486 30.769 0.00 0.00 36.93 4.40
3072 3149 7.925043 TTAGAATAATTTCGTACCAAAGCCA 57.075 32.000 0.00 0.00 36.93 4.75
3073 3150 9.797556 AAATTAGAATAATTTCGTACCAAAGCC 57.202 29.630 2.42 0.00 36.93 4.35
3093 3170 9.289303 GCACACTTCACCATTTGTATAAATTAG 57.711 33.333 0.00 0.00 34.34 1.73
3094 3171 9.019656 AGCACACTTCACCATTTGTATAAATTA 57.980 29.630 0.00 0.00 34.34 1.40
3095 3172 7.814107 CAGCACACTTCACCATTTGTATAAATT 59.186 33.333 0.00 0.00 34.34 1.82
3096 3173 7.176515 TCAGCACACTTCACCATTTGTATAAAT 59.823 33.333 0.00 0.00 36.97 1.40
3097 3174 6.488344 TCAGCACACTTCACCATTTGTATAAA 59.512 34.615 0.00 0.00 0.00 1.40
3098 3175 6.000840 TCAGCACACTTCACCATTTGTATAA 58.999 36.000 0.00 0.00 0.00 0.98
3099 3176 5.411361 GTCAGCACACTTCACCATTTGTATA 59.589 40.000 0.00 0.00 0.00 1.47
3100 3177 4.216257 GTCAGCACACTTCACCATTTGTAT 59.784 41.667 0.00 0.00 0.00 2.29
3101 3178 3.563808 GTCAGCACACTTCACCATTTGTA 59.436 43.478 0.00 0.00 0.00 2.41
3102 3179 2.358898 GTCAGCACACTTCACCATTTGT 59.641 45.455 0.00 0.00 0.00 2.83
3103 3180 2.287788 GGTCAGCACACTTCACCATTTG 60.288 50.000 0.00 0.00 0.00 2.32
3104 3181 1.956477 GGTCAGCACACTTCACCATTT 59.044 47.619 0.00 0.00 0.00 2.32
3105 3182 1.143684 AGGTCAGCACACTTCACCATT 59.856 47.619 0.00 0.00 0.00 3.16
3106 3183 0.767375 AGGTCAGCACACTTCACCAT 59.233 50.000 0.00 0.00 0.00 3.55
3107 3184 1.070134 GTAGGTCAGCACACTTCACCA 59.930 52.381 0.00 0.00 0.00 4.17
3108 3185 1.608283 GGTAGGTCAGCACACTTCACC 60.608 57.143 0.00 0.00 0.00 4.02
3109 3186 1.070134 TGGTAGGTCAGCACACTTCAC 59.930 52.381 0.00 0.00 0.00 3.18
3110 3187 1.419381 TGGTAGGTCAGCACACTTCA 58.581 50.000 0.00 0.00 0.00 3.02
3111 3188 2.543777 TTGGTAGGTCAGCACACTTC 57.456 50.000 0.00 0.00 33.42 3.01
3112 3189 3.508845 AATTGGTAGGTCAGCACACTT 57.491 42.857 0.00 0.00 33.42 3.16
3113 3190 3.583086 AGTAATTGGTAGGTCAGCACACT 59.417 43.478 0.00 0.00 33.42 3.55
3114 3191 3.939066 AGTAATTGGTAGGTCAGCACAC 58.061 45.455 0.00 0.00 33.42 3.82
3115 3192 4.041075 TCAAGTAATTGGTAGGTCAGCACA 59.959 41.667 2.65 0.00 33.42 4.57
3116 3193 4.575885 TCAAGTAATTGGTAGGTCAGCAC 58.424 43.478 2.65 0.00 33.42 4.40
3117 3194 4.901197 TCAAGTAATTGGTAGGTCAGCA 57.099 40.909 2.65 0.00 0.00 4.41
3118 3195 6.821665 TGTAATCAAGTAATTGGTAGGTCAGC 59.178 38.462 2.65 0.00 0.00 4.26
3119 3196 8.964476 ATGTAATCAAGTAATTGGTAGGTCAG 57.036 34.615 2.65 0.00 0.00 3.51
3120 3197 9.747898 AAATGTAATCAAGTAATTGGTAGGTCA 57.252 29.630 2.65 0.00 0.00 4.02
3159 3236 9.449719 CACCAAAACAGAGTATAAGGAGTATTT 57.550 33.333 0.00 0.00 0.00 1.40
3160 3237 8.047310 CCACCAAAACAGAGTATAAGGAGTATT 58.953 37.037 0.00 0.00 0.00 1.89
3161 3238 7.565680 CCACCAAAACAGAGTATAAGGAGTAT 58.434 38.462 0.00 0.00 0.00 2.12
3162 3239 6.575649 GCCACCAAAACAGAGTATAAGGAGTA 60.576 42.308 0.00 0.00 0.00 2.59
3163 3240 5.803470 GCCACCAAAACAGAGTATAAGGAGT 60.803 44.000 0.00 0.00 0.00 3.85
3164 3241 4.636206 GCCACCAAAACAGAGTATAAGGAG 59.364 45.833 0.00 0.00 0.00 3.69
3165 3242 4.288626 AGCCACCAAAACAGAGTATAAGGA 59.711 41.667 0.00 0.00 0.00 3.36
3166 3243 4.589908 AGCCACCAAAACAGAGTATAAGG 58.410 43.478 0.00 0.00 0.00 2.69
3167 3244 6.407202 AGTAGCCACCAAAACAGAGTATAAG 58.593 40.000 0.00 0.00 0.00 1.73
3168 3245 6.368779 AGTAGCCACCAAAACAGAGTATAA 57.631 37.500 0.00 0.00 0.00 0.98
3169 3246 6.368779 AAGTAGCCACCAAAACAGAGTATA 57.631 37.500 0.00 0.00 0.00 1.47
3170 3247 4.910458 AGTAGCCACCAAAACAGAGTAT 57.090 40.909 0.00 0.00 0.00 2.12
3171 3248 4.699925 AAGTAGCCACCAAAACAGAGTA 57.300 40.909 0.00 0.00 0.00 2.59
3172 3249 3.577805 AAGTAGCCACCAAAACAGAGT 57.422 42.857 0.00 0.00 0.00 3.24
3173 3250 4.636206 GGATAAGTAGCCACCAAAACAGAG 59.364 45.833 0.00 0.00 0.00 3.35
3174 3251 4.288626 AGGATAAGTAGCCACCAAAACAGA 59.711 41.667 0.00 0.00 33.22 3.41
3175 3252 4.396166 CAGGATAAGTAGCCACCAAAACAG 59.604 45.833 0.00 0.00 33.22 3.16
3176 3253 4.042311 TCAGGATAAGTAGCCACCAAAACA 59.958 41.667 0.00 0.00 33.22 2.83
3177 3254 4.585879 TCAGGATAAGTAGCCACCAAAAC 58.414 43.478 0.00 0.00 33.22 2.43
3178 3255 4.919774 TCAGGATAAGTAGCCACCAAAA 57.080 40.909 0.00 0.00 33.22 2.44
3179 3256 4.721776 AGATCAGGATAAGTAGCCACCAAA 59.278 41.667 0.00 0.00 33.22 3.28
3180 3257 4.298626 AGATCAGGATAAGTAGCCACCAA 58.701 43.478 0.00 0.00 33.22 3.67
3181 3258 3.928754 AGATCAGGATAAGTAGCCACCA 58.071 45.455 0.00 0.00 33.22 4.17
3182 3259 4.345257 TGAAGATCAGGATAAGTAGCCACC 59.655 45.833 0.00 0.00 33.22 4.61
3183 3260 5.537300 TGAAGATCAGGATAAGTAGCCAC 57.463 43.478 0.00 0.00 33.22 5.01
3184 3261 5.840693 TGATGAAGATCAGGATAAGTAGCCA 59.159 40.000 0.00 0.00 33.40 4.75
3185 3262 6.352016 TGATGAAGATCAGGATAAGTAGCC 57.648 41.667 0.00 0.00 33.40 3.93
3197 3274 6.490241 TTTGCCTCTATCTGATGAAGATCA 57.510 37.500 0.00 0.00 42.27 2.92
3198 3275 7.982761 AATTTGCCTCTATCTGATGAAGATC 57.017 36.000 0.00 0.00 42.27 2.75
3200 3277 9.281371 CATTAATTTGCCTCTATCTGATGAAGA 57.719 33.333 0.00 0.00 39.94 2.87
3201 3278 9.064706 ACATTAATTTGCCTCTATCTGATGAAG 57.935 33.333 0.00 0.00 0.00 3.02
3202 3279 8.985315 ACATTAATTTGCCTCTATCTGATGAA 57.015 30.769 0.00 0.00 0.00 2.57
3203 3280 8.985315 AACATTAATTTGCCTCTATCTGATGA 57.015 30.769 0.00 0.00 0.00 2.92
3206 3283 9.241919 TCAAAACATTAATTTGCCTCTATCTGA 57.758 29.630 0.00 0.00 37.62 3.27
3207 3284 9.294030 GTCAAAACATTAATTTGCCTCTATCTG 57.706 33.333 0.00 0.00 37.62 2.90
3208 3285 8.470002 GGTCAAAACATTAATTTGCCTCTATCT 58.530 33.333 0.00 0.00 37.62 1.98
3209 3286 8.470002 AGGTCAAAACATTAATTTGCCTCTATC 58.530 33.333 8.78 0.00 38.63 2.08
3210 3287 8.253113 CAGGTCAAAACATTAATTTGCCTCTAT 58.747 33.333 10.49 0.00 39.77 1.98
3211 3288 7.232534 ACAGGTCAAAACATTAATTTGCCTCTA 59.767 33.333 10.49 0.00 39.77 2.43
3212 3289 6.041979 ACAGGTCAAAACATTAATTTGCCTCT 59.958 34.615 10.49 2.01 39.77 3.69
3213 3290 6.146021 CACAGGTCAAAACATTAATTTGCCTC 59.854 38.462 10.49 0.63 39.77 4.70
3214 3291 5.990996 CACAGGTCAAAACATTAATTTGCCT 59.009 36.000 8.78 8.78 41.07 4.75
3215 3292 5.179182 CCACAGGTCAAAACATTAATTTGCC 59.821 40.000 0.00 0.00 37.62 4.52
3216 3293 5.179182 CCCACAGGTCAAAACATTAATTTGC 59.821 40.000 0.00 0.00 37.62 3.68
3217 3294 6.520272 TCCCACAGGTCAAAACATTAATTTG 58.480 36.000 0.00 0.00 38.76 2.32
3218 3295 6.739331 TCCCACAGGTCAAAACATTAATTT 57.261 33.333 0.00 0.00 0.00 1.82
3219 3296 5.279456 GCTCCCACAGGTCAAAACATTAATT 60.279 40.000 0.00 0.00 0.00 1.40
3220 3297 4.220602 GCTCCCACAGGTCAAAACATTAAT 59.779 41.667 0.00 0.00 0.00 1.40
3221 3298 3.572255 GCTCCCACAGGTCAAAACATTAA 59.428 43.478 0.00 0.00 0.00 1.40
3222 3299 3.153919 GCTCCCACAGGTCAAAACATTA 58.846 45.455 0.00 0.00 0.00 1.90
3223 3300 1.963515 GCTCCCACAGGTCAAAACATT 59.036 47.619 0.00 0.00 0.00 2.71
3224 3301 1.145738 AGCTCCCACAGGTCAAAACAT 59.854 47.619 0.00 0.00 0.00 2.71
3225 3302 0.550914 AGCTCCCACAGGTCAAAACA 59.449 50.000 0.00 0.00 0.00 2.83
3226 3303 2.561478 TAGCTCCCACAGGTCAAAAC 57.439 50.000 0.00 0.00 33.71 2.43
3227 3304 2.642311 TGATAGCTCCCACAGGTCAAAA 59.358 45.455 0.00 0.00 33.71 2.44
3228 3305 2.265367 TGATAGCTCCCACAGGTCAAA 58.735 47.619 0.00 0.00 33.71 2.69
3229 3306 1.951209 TGATAGCTCCCACAGGTCAA 58.049 50.000 0.00 0.00 33.71 3.18
3230 3307 1.951209 TTGATAGCTCCCACAGGTCA 58.049 50.000 0.00 0.00 33.71 4.02
3231 3308 3.567478 AATTGATAGCTCCCACAGGTC 57.433 47.619 0.00 0.00 33.71 3.85
3232 3309 4.101741 GTCTAATTGATAGCTCCCACAGGT 59.898 45.833 0.00 0.00 36.55 4.00
3233 3310 4.346418 AGTCTAATTGATAGCTCCCACAGG 59.654 45.833 0.00 0.00 0.00 4.00
3234 3311 5.543507 AGTCTAATTGATAGCTCCCACAG 57.456 43.478 0.00 0.00 0.00 3.66
3235 3312 5.540337 CCTAGTCTAATTGATAGCTCCCACA 59.460 44.000 0.00 0.00 0.00 4.17
3236 3313 5.540719 ACCTAGTCTAATTGATAGCTCCCAC 59.459 44.000 0.00 0.00 0.00 4.61
3237 3314 5.716979 ACCTAGTCTAATTGATAGCTCCCA 58.283 41.667 0.00 0.00 0.00 4.37
3238 3315 6.673839 AACCTAGTCTAATTGATAGCTCCC 57.326 41.667 0.00 0.00 0.00 4.30
3239 3316 9.026121 TCATAACCTAGTCTAATTGATAGCTCC 57.974 37.037 0.00 0.00 0.00 4.70
3241 3318 9.594936 ACTCATAACCTAGTCTAATTGATAGCT 57.405 33.333 0.00 0.00 0.00 3.32
3245 3322 9.315363 CCCTACTCATAACCTAGTCTAATTGAT 57.685 37.037 0.00 0.00 0.00 2.57
3246 3323 7.728981 CCCCTACTCATAACCTAGTCTAATTGA 59.271 40.741 0.00 0.00 0.00 2.57
3247 3324 7.509659 ACCCCTACTCATAACCTAGTCTAATTG 59.490 40.741 0.00 0.00 0.00 2.32
3248 3325 7.509659 CACCCCTACTCATAACCTAGTCTAATT 59.490 40.741 0.00 0.00 0.00 1.40
3249 3326 7.011382 CACCCCTACTCATAACCTAGTCTAAT 58.989 42.308 0.00 0.00 0.00 1.73
3250 3327 6.371278 CACCCCTACTCATAACCTAGTCTAA 58.629 44.000 0.00 0.00 0.00 2.10
3251 3328 5.692242 GCACCCCTACTCATAACCTAGTCTA 60.692 48.000 0.00 0.00 0.00 2.59
3252 3329 4.805744 CACCCCTACTCATAACCTAGTCT 58.194 47.826 0.00 0.00 0.00 3.24
3253 3330 3.321396 GCACCCCTACTCATAACCTAGTC 59.679 52.174 0.00 0.00 0.00 2.59
3254 3331 3.306613 GCACCCCTACTCATAACCTAGT 58.693 50.000 0.00 0.00 0.00 2.57
3255 3332 2.633481 GGCACCCCTACTCATAACCTAG 59.367 54.545 0.00 0.00 0.00 3.02
3256 3333 2.686119 GGCACCCCTACTCATAACCTA 58.314 52.381 0.00 0.00 0.00 3.08
3257 3334 1.508256 GGCACCCCTACTCATAACCT 58.492 55.000 0.00 0.00 0.00 3.50
3272 3349 5.852282 ACATTTAATATTCACAGGGGCAC 57.148 39.130 0.00 0.00 0.00 5.01
3273 3350 6.865834 AAACATTTAATATTCACAGGGGCA 57.134 33.333 0.00 0.00 0.00 5.36
3274 3351 9.830975 ATAAAAACATTTAATATTCACAGGGGC 57.169 29.630 0.00 0.00 0.00 5.80
3287 3364 9.566432 ACCAAAGCCATCAATAAAAACATTTAA 57.434 25.926 0.00 0.00 0.00 1.52
3513 3590 8.621532 ATGTGCTAAATAACTGAAAAGTCTGA 57.378 30.769 0.00 0.00 0.00 3.27
3594 3671 7.179872 TCCATACAGCTTATAGATCAGATTGCT 59.820 37.037 0.00 0.00 0.00 3.91
3933 4015 4.002982 TCAGCTTTTCGTGCACTGATAAT 58.997 39.130 16.19 0.00 32.65 1.28
4099 4465 3.312697 GGATCGGGCTAAAATCAACAGAC 59.687 47.826 0.00 0.00 0.00 3.51
4133 4499 7.800092 ACAAGTGAAGGCAGAAATAGATATCT 58.200 34.615 10.73 10.73 0.00 1.98
4150 4516 3.068024 GGCATTCCAACTGAACAAGTGAA 59.932 43.478 0.00 0.00 39.81 3.18
4153 4519 2.665165 TGGCATTCCAACTGAACAAGT 58.335 42.857 0.00 0.00 39.99 3.16
4322 4688 1.338674 TGCACATACCTGCAGTGGTAC 60.339 52.381 13.81 0.63 44.34 3.34
4343 4709 7.692460 TCTTAACCGTCAGTAACTAGAATGA 57.308 36.000 0.00 0.00 0.00 2.57
4356 4722 2.635915 AGTGGAACCATCTTAACCGTCA 59.364 45.455 0.00 0.00 37.80 4.35
4691 5057 4.020573 TCCTGGTTGTACATCTGTTTCGAT 60.021 41.667 0.00 0.00 0.00 3.59
4757 5123 1.001269 ATCGAGGTCCTCCGTGTCA 60.001 57.895 13.54 0.00 39.05 3.58
4953 5344 1.562672 TTTCCAGCCTCCCAGCTACC 61.563 60.000 0.00 0.00 42.61 3.18
4975 5366 1.066605 GATCAGCGTAACGGCTCCTAA 59.933 52.381 0.00 0.00 42.53 2.69
5086 5483 0.179156 CTGCCAATTTGCCTAGCGTG 60.179 55.000 0.00 0.00 0.00 5.34
5155 5552 2.488153 CTCCAAAACAAAGATCCCGACC 59.512 50.000 0.00 0.00 0.00 4.79
5198 5596 2.568062 TGAACCACCTTGCGATACCTAA 59.432 45.455 0.00 0.00 0.00 2.69
5222 5620 2.252260 CGTGTGCCTTTCTTGCCG 59.748 61.111 0.00 0.00 0.00 5.69
5234 5632 3.673366 CTTTGTGCATACATAGCGTGTG 58.327 45.455 7.88 0.00 42.24 3.82
5340 5742 4.376146 TGTTGCAAAATAAGGCCTGTTTC 58.624 39.130 5.69 0.92 0.00 2.78
5429 5831 6.607600 AGGGAAAATGTAAATAAGGGCTCTTC 59.392 38.462 0.00 0.00 34.59 2.87
5432 5834 7.287810 TCTAGGGAAAATGTAAATAAGGGCTC 58.712 38.462 0.00 0.00 0.00 4.70
5557 5964 1.267806 AGAAAGTGCCAGTGATTTGCG 59.732 47.619 0.00 0.00 0.00 4.85
5631 6039 0.968393 GGCGTGGTCCTTCTCTCTCT 60.968 60.000 0.00 0.00 0.00 3.10
5639 6047 0.609131 CCAGATTTGGCGTGGTCCTT 60.609 55.000 0.00 0.00 37.73 3.36
5669 6077 4.373116 GTCAAGCGGGCCTCGTGA 62.373 66.667 8.09 8.09 41.72 4.35
5699 6107 1.640149 TCCTGATTGCTTCCATGGGAA 59.360 47.619 13.02 4.19 39.66 3.97
5700 6108 1.064463 GTCCTGATTGCTTCCATGGGA 60.064 52.381 13.02 0.69 0.00 4.37
5702 6110 1.341285 TGGTCCTGATTGCTTCCATGG 60.341 52.381 4.97 4.97 0.00 3.66
5703 6111 2.133281 TGGTCCTGATTGCTTCCATG 57.867 50.000 0.00 0.00 0.00 3.66
5704 6112 2.731572 CTTGGTCCTGATTGCTTCCAT 58.268 47.619 0.00 0.00 0.00 3.41
5705 6113 1.887956 GCTTGGTCCTGATTGCTTCCA 60.888 52.381 0.00 0.00 0.00 3.53
5706 6114 0.813821 GCTTGGTCCTGATTGCTTCC 59.186 55.000 0.00 0.00 0.00 3.46
5707 6115 0.813821 GGCTTGGTCCTGATTGCTTC 59.186 55.000 0.00 0.00 0.00 3.86
5708 6116 0.613012 GGGCTTGGTCCTGATTGCTT 60.613 55.000 0.00 0.00 0.00 3.91
5709 6117 1.000396 GGGCTTGGTCCTGATTGCT 60.000 57.895 0.00 0.00 0.00 3.91
5750 6158 3.123116 CGGCCTAACTTTCTTTCTTCGAC 59.877 47.826 0.00 0.00 0.00 4.20
5756 6164 2.357075 CCTCCGGCCTAACTTTCTTTC 58.643 52.381 0.00 0.00 0.00 2.62
5795 6203 3.525537 CGAGCTATCTGAAATGTGTGGT 58.474 45.455 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.