Multiple sequence alignment - TraesCS2A01G584500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G584500 chr2A 100.000 2549 0 0 1 2549 775968548 775966000 0.000000e+00 4708.0
1 TraesCS2A01G584500 chr2A 96.160 1979 58 5 586 2549 771778418 771780393 0.000000e+00 3217.0
2 TraesCS2A01G584500 chr2A 95.630 1968 66 9 586 2549 233255260 233257211 0.000000e+00 3140.0
3 TraesCS2A01G584500 chr2A 93.962 1971 81 22 586 2549 744582028 744583967 0.000000e+00 2946.0
4 TraesCS2A01G584500 chr2A 97.695 1128 25 1 585 1712 6302713 6301587 0.000000e+00 1938.0
5 TraesCS2A01G584500 chr2A 91.358 81 7 0 1 81 775977634 775977554 7.450000e-21 111.0
6 TraesCS2A01G584500 chr3A 97.013 1975 47 7 586 2549 683237674 683235701 0.000000e+00 3310.0
7 TraesCS2A01G584500 chr5A 96.823 1983 43 6 584 2549 563443927 563445906 0.000000e+00 3295.0
8 TraesCS2A01G584500 chr5A 95.775 71 3 0 1 71 654157158 654157088 5.760000e-22 115.0
9 TraesCS2A01G584500 chr5A 95.775 71 3 0 1 71 654168949 654168879 5.760000e-22 115.0
10 TraesCS2A01G584500 chr7A 96.475 1986 48 5 584 2549 49208207 49210190 0.000000e+00 3260.0
11 TraesCS2A01G584500 chr7A 95.711 1982 54 10 586 2549 150203039 150201071 0.000000e+00 3160.0
12 TraesCS2A01G584500 chr7A 95.576 1989 56 8 580 2549 689996377 689994402 0.000000e+00 3157.0
13 TraesCS2A01G584500 chr1A 96.016 1983 53 7 586 2544 50511105 50513085 0.000000e+00 3201.0
14 TraesCS2A01G584500 chr6A 96.095 1972 60 6 583 2549 203520916 203518957 0.000000e+00 3199.0
15 TraesCS2A01G584500 chr6A 95.835 1969 64 7 580 2544 57901152 57903106 0.000000e+00 3166.0
16 TraesCS2A01G584500 chr2D 91.268 481 22 6 125 586 651717298 651717777 2.770000e-179 638.0
17 TraesCS2A01G584500 chr2D 98.765 81 1 0 1 81 651715944 651716024 7.350000e-31 145.0
18 TraesCS2A01G584500 chr2D 91.139 79 7 0 2 80 651697161 651697239 9.640000e-20 108.0
19 TraesCS2A01G584500 chr2D 87.342 79 10 0 1 79 651721539 651721617 9.710000e-15 91.6
20 TraesCS2A01G584500 chr2B 96.296 81 3 0 1 81 781541645 781541565 1.590000e-27 134.0
21 TraesCS2A01G584500 chr2B 87.805 82 9 1 1 81 781581560 781581479 7.510000e-16 95.3
22 TraesCS2A01G584500 chr5D 95.775 71 3 0 1 71 527156574 527156504 5.760000e-22 115.0
23 TraesCS2A01G584500 chr5B 95.775 71 3 0 1 71 663228598 663228528 5.760000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G584500 chr2A 775966000 775968548 2548 True 4708.000000 4708 100.000000 1 2549 1 chr2A.!!$R2 2548
1 TraesCS2A01G584500 chr2A 771778418 771780393 1975 False 3217.000000 3217 96.160000 586 2549 1 chr2A.!!$F3 1963
2 TraesCS2A01G584500 chr2A 233255260 233257211 1951 False 3140.000000 3140 95.630000 586 2549 1 chr2A.!!$F1 1963
3 TraesCS2A01G584500 chr2A 744582028 744583967 1939 False 2946.000000 2946 93.962000 586 2549 1 chr2A.!!$F2 1963
4 TraesCS2A01G584500 chr2A 6301587 6302713 1126 True 1938.000000 1938 97.695000 585 1712 1 chr2A.!!$R1 1127
5 TraesCS2A01G584500 chr3A 683235701 683237674 1973 True 3310.000000 3310 97.013000 586 2549 1 chr3A.!!$R1 1963
6 TraesCS2A01G584500 chr5A 563443927 563445906 1979 False 3295.000000 3295 96.823000 584 2549 1 chr5A.!!$F1 1965
7 TraesCS2A01G584500 chr7A 49208207 49210190 1983 False 3260.000000 3260 96.475000 584 2549 1 chr7A.!!$F1 1965
8 TraesCS2A01G584500 chr7A 150201071 150203039 1968 True 3160.000000 3160 95.711000 586 2549 1 chr7A.!!$R1 1963
9 TraesCS2A01G584500 chr7A 689994402 689996377 1975 True 3157.000000 3157 95.576000 580 2549 1 chr7A.!!$R2 1969
10 TraesCS2A01G584500 chr1A 50511105 50513085 1980 False 3201.000000 3201 96.016000 586 2544 1 chr1A.!!$F1 1958
11 TraesCS2A01G584500 chr6A 203518957 203520916 1959 True 3199.000000 3199 96.095000 583 2549 1 chr6A.!!$R1 1966
12 TraesCS2A01G584500 chr6A 57901152 57903106 1954 False 3166.000000 3166 95.835000 580 2544 1 chr6A.!!$F1 1964
13 TraesCS2A01G584500 chr2D 651715944 651721617 5673 False 291.533333 638 92.458333 1 586 3 chr2D.!!$F2 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 562 0.037326 GGTCCATGAGTTCGCACAGA 60.037 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2057 2536 1.338389 GCACCTGGCGTAAACCTCTAA 60.338 52.381 0.0 0.0 0.0 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.118510 CACAACTTTCACACAAAGTTTGTCC 59.881 40.000 18.34 0.00 45.20 4.02
81 82 9.734984 GCATTATATGGGTAGGTAAAAGTACAT 57.265 33.333 0.00 0.00 31.21 2.29
85 86 6.796785 ATGGGTAGGTAAAAGTACATACGT 57.203 37.500 0.00 0.00 44.67 3.57
86 87 6.207691 TGGGTAGGTAAAAGTACATACGTC 57.792 41.667 0.00 0.57 44.67 4.34
87 88 5.127031 TGGGTAGGTAAAAGTACATACGTCC 59.873 44.000 0.00 1.66 44.67 4.79
89 90 6.127338 GGGTAGGTAAAAGTACATACGTCCTT 60.127 42.308 0.00 0.00 44.67 3.36
90 91 7.068226 GGGTAGGTAAAAGTACATACGTCCTTA 59.932 40.741 0.00 0.00 44.67 2.69
91 92 8.466798 GGTAGGTAAAAGTACATACGTCCTTAA 58.533 37.037 0.00 0.00 44.67 1.85
102 103 9.688592 GTACATACGTCCTTAATTAGCTAACAT 57.311 33.333 8.70 3.55 0.00 2.71
103 104 8.589335 ACATACGTCCTTAATTAGCTAACATG 57.411 34.615 8.70 2.47 0.00 3.21
104 105 7.656137 ACATACGTCCTTAATTAGCTAACATGG 59.344 37.037 8.70 11.13 0.00 3.66
105 106 6.229936 ACGTCCTTAATTAGCTAACATGGA 57.770 37.500 8.70 13.11 0.00 3.41
107 108 6.761714 ACGTCCTTAATTAGCTAACATGGAAG 59.238 38.462 22.11 22.11 0.00 3.46
108 109 6.984474 CGTCCTTAATTAGCTAACATGGAAGA 59.016 38.462 20.68 8.29 0.00 2.87
109 110 7.494625 CGTCCTTAATTAGCTAACATGGAAGAA 59.505 37.037 20.68 2.55 0.00 2.52
110 111 9.174166 GTCCTTAATTAGCTAACATGGAAGAAA 57.826 33.333 18.73 6.15 0.00 2.52
111 112 9.920946 TCCTTAATTAGCTAACATGGAAGAAAT 57.079 29.630 8.70 0.00 0.00 2.17
135 136 4.541973 ATTTTCTTTTGCAAGCTAGGGG 57.458 40.909 0.00 0.00 0.00 4.79
136 137 1.256812 TTCTTTTGCAAGCTAGGGGC 58.743 50.000 0.00 0.00 42.19 5.80
137 138 0.611896 TCTTTTGCAAGCTAGGGGCC 60.612 55.000 0.00 0.00 43.05 5.80
138 139 1.607801 CTTTTGCAAGCTAGGGGCCC 61.608 60.000 17.12 17.12 43.05 5.80
139 140 2.092904 TTTTGCAAGCTAGGGGCCCT 62.093 55.000 31.38 31.38 43.05 5.19
140 141 2.786512 TTTGCAAGCTAGGGGCCCTG 62.787 60.000 35.70 24.21 43.05 4.45
141 142 3.732849 GCAAGCTAGGGGCCCTGT 61.733 66.667 35.70 16.71 43.05 4.00
142 143 2.592308 CAAGCTAGGGGCCCTGTC 59.408 66.667 35.70 24.54 43.05 3.51
143 144 2.692741 AAGCTAGGGGCCCTGTCC 60.693 66.667 35.70 21.46 43.05 4.02
144 145 3.274550 AAGCTAGGGGCCCTGTCCT 62.275 63.158 35.70 23.32 43.05 3.85
145 146 1.898190 AAGCTAGGGGCCCTGTCCTA 61.898 60.000 35.70 14.09 43.05 2.94
146 147 4.629442 CTAGGGGCCCTGTCCTAG 57.371 66.667 35.70 20.15 44.36 3.02
147 148 1.839296 CTAGGGGCCCTGTCCTAGC 60.839 68.421 35.70 1.15 43.99 3.42
148 149 3.406113 TAGGGGCCCTGTCCTAGCC 62.406 68.421 35.70 0.26 46.37 3.93
151 152 3.015145 GGCCCTGTCCTAGCCCAA 61.015 66.667 0.00 0.00 41.00 4.12
152 153 2.386935 GGCCCTGTCCTAGCCCAAT 61.387 63.158 0.00 0.00 41.00 3.16
153 154 1.615262 GCCCTGTCCTAGCCCAATT 59.385 57.895 0.00 0.00 0.00 2.32
154 155 0.753111 GCCCTGTCCTAGCCCAATTG 60.753 60.000 0.00 0.00 0.00 2.32
155 156 0.625849 CCCTGTCCTAGCCCAATTGT 59.374 55.000 4.43 0.00 0.00 2.71
156 157 1.683011 CCCTGTCCTAGCCCAATTGTG 60.683 57.143 4.43 0.00 0.00 3.33
157 158 1.281867 CCTGTCCTAGCCCAATTGTGA 59.718 52.381 4.43 0.00 0.00 3.58
158 159 2.636830 CTGTCCTAGCCCAATTGTGAG 58.363 52.381 4.43 0.00 0.00 3.51
159 160 1.985159 TGTCCTAGCCCAATTGTGAGT 59.015 47.619 4.43 0.00 0.00 3.41
160 161 2.290260 TGTCCTAGCCCAATTGTGAGTG 60.290 50.000 4.43 0.00 0.00 3.51
161 162 1.281867 TCCTAGCCCAATTGTGAGTGG 59.718 52.381 4.43 0.00 40.68 4.00
162 163 1.281867 CCTAGCCCAATTGTGAGTGGA 59.718 52.381 4.43 0.00 43.66 4.02
163 164 2.636830 CTAGCCCAATTGTGAGTGGAG 58.363 52.381 4.43 0.00 43.66 3.86
164 165 0.773644 AGCCCAATTGTGAGTGGAGT 59.226 50.000 4.43 0.00 43.66 3.85
165 166 1.985159 AGCCCAATTGTGAGTGGAGTA 59.015 47.619 4.43 0.00 43.66 2.59
166 167 2.026822 AGCCCAATTGTGAGTGGAGTAG 60.027 50.000 4.43 0.00 43.66 2.57
167 168 2.027192 GCCCAATTGTGAGTGGAGTAGA 60.027 50.000 4.43 0.00 43.66 2.59
168 169 3.370953 GCCCAATTGTGAGTGGAGTAGAT 60.371 47.826 4.43 0.00 43.66 1.98
169 170 4.194640 CCCAATTGTGAGTGGAGTAGATG 58.805 47.826 4.43 0.00 43.66 2.90
170 171 4.080919 CCCAATTGTGAGTGGAGTAGATGA 60.081 45.833 4.43 0.00 43.66 2.92
171 172 5.397221 CCCAATTGTGAGTGGAGTAGATGAT 60.397 44.000 4.43 0.00 43.66 2.45
172 173 6.183361 CCCAATTGTGAGTGGAGTAGATGATA 60.183 42.308 4.43 0.00 43.66 2.15
173 174 7.448420 CCAATTGTGAGTGGAGTAGATGATAT 58.552 38.462 4.43 0.00 43.66 1.63
174 175 7.601886 CCAATTGTGAGTGGAGTAGATGATATC 59.398 40.741 4.43 0.00 43.66 1.63
175 176 7.846101 ATTGTGAGTGGAGTAGATGATATCA 57.154 36.000 8.10 8.10 0.00 2.15
176 177 6.641169 TGTGAGTGGAGTAGATGATATCAC 57.359 41.667 7.78 2.47 36.08 3.06
177 178 6.368805 TGTGAGTGGAGTAGATGATATCACT 58.631 40.000 7.78 9.89 36.40 3.41
178 179 7.518188 TGTGAGTGGAGTAGATGATATCACTA 58.482 38.462 7.78 8.93 36.40 2.74
179 180 7.663493 TGTGAGTGGAGTAGATGATATCACTAG 59.337 40.741 7.78 0.00 36.40 2.57
180 181 6.657117 TGAGTGGAGTAGATGATATCACTAGC 59.343 42.308 7.78 6.96 34.63 3.42
181 182 6.789268 AGTGGAGTAGATGATATCACTAGCT 58.211 40.000 7.78 10.75 33.00 3.32
182 183 6.658816 AGTGGAGTAGATGATATCACTAGCTG 59.341 42.308 7.78 0.00 33.00 4.24
183 184 6.657117 GTGGAGTAGATGATATCACTAGCTGA 59.343 42.308 7.78 0.00 0.00 4.26
184 185 6.883756 TGGAGTAGATGATATCACTAGCTGAG 59.116 42.308 7.78 0.00 30.20 3.35
185 186 6.884295 GGAGTAGATGATATCACTAGCTGAGT 59.116 42.308 7.78 0.00 39.82 3.41
186 187 7.393234 GGAGTAGATGATATCACTAGCTGAGTT 59.607 40.741 7.78 0.00 35.64 3.01
187 188 9.443323 GAGTAGATGATATCACTAGCTGAGTTA 57.557 37.037 7.78 0.00 35.64 2.24
188 189 9.448438 AGTAGATGATATCACTAGCTGAGTTAG 57.552 37.037 7.78 1.54 35.64 2.34
189 190 9.226606 GTAGATGATATCACTAGCTGAGTTAGT 57.773 37.037 7.78 2.95 35.64 2.24
190 191 8.109705 AGATGATATCACTAGCTGAGTTAGTG 57.890 38.462 24.83 24.83 44.70 2.74
191 192 7.723616 AGATGATATCACTAGCTGAGTTAGTGT 59.276 37.037 27.83 19.85 44.07 3.55
192 193 7.032377 TGATATCACTAGCTGAGTTAGTGTG 57.968 40.000 27.83 11.55 44.07 3.82
193 194 3.577649 TCACTAGCTGAGTTAGTGTGC 57.422 47.619 27.83 0.00 44.07 4.57
194 195 2.890945 TCACTAGCTGAGTTAGTGTGCA 59.109 45.455 27.83 12.59 44.07 4.57
195 196 3.320826 TCACTAGCTGAGTTAGTGTGCAA 59.679 43.478 27.83 12.29 44.07 4.08
196 197 3.430218 CACTAGCTGAGTTAGTGTGCAAC 59.570 47.826 23.18 0.00 40.66 4.17
197 198 1.502231 AGCTGAGTTAGTGTGCAACG 58.498 50.000 0.00 0.00 42.39 4.10
198 199 0.512952 GCTGAGTTAGTGTGCAACGG 59.487 55.000 0.00 0.00 42.39 4.44
199 200 1.865865 CTGAGTTAGTGTGCAACGGT 58.134 50.000 0.00 0.00 42.39 4.83
200 201 2.210116 CTGAGTTAGTGTGCAACGGTT 58.790 47.619 0.00 0.00 42.39 4.44
201 202 1.937223 TGAGTTAGTGTGCAACGGTTG 59.063 47.619 16.35 16.35 42.39 3.77
202 203 2.206750 GAGTTAGTGTGCAACGGTTGA 58.793 47.619 24.20 6.95 42.39 3.18
203 204 2.610374 GAGTTAGTGTGCAACGGTTGAA 59.390 45.455 24.20 11.66 42.39 2.69
204 205 2.612212 AGTTAGTGTGCAACGGTTGAAG 59.388 45.455 24.20 0.00 42.39 3.02
205 206 2.605837 TAGTGTGCAACGGTTGAAGA 57.394 45.000 24.20 10.00 42.39 2.87
206 207 1.967319 AGTGTGCAACGGTTGAAGAT 58.033 45.000 24.20 0.00 42.39 2.40
207 208 3.120321 AGTGTGCAACGGTTGAAGATA 57.880 42.857 24.20 0.86 42.39 1.98
208 209 3.067106 AGTGTGCAACGGTTGAAGATAG 58.933 45.455 24.20 0.00 42.39 2.08
209 210 1.804151 TGTGCAACGGTTGAAGATAGC 59.196 47.619 24.20 7.54 42.39 2.97
210 211 1.804151 GTGCAACGGTTGAAGATAGCA 59.196 47.619 24.20 10.11 0.00 3.49
211 212 2.420022 GTGCAACGGTTGAAGATAGCAT 59.580 45.455 24.20 0.00 32.98 3.79
212 213 2.677836 TGCAACGGTTGAAGATAGCATC 59.322 45.455 24.20 3.26 0.00 3.91
213 214 2.939103 GCAACGGTTGAAGATAGCATCT 59.061 45.455 24.20 0.00 42.61 2.90
229 230 9.941325 AGATAGCATCTTCAAGTATGATAAAGG 57.059 33.333 2.14 0.00 35.76 3.11
230 231 9.160496 GATAGCATCTTCAAGTATGATAAAGGG 57.840 37.037 2.14 0.00 34.96 3.95
231 232 6.904626 AGCATCTTCAAGTATGATAAAGGGT 58.095 36.000 2.14 0.00 34.96 4.34
232 233 6.769822 AGCATCTTCAAGTATGATAAAGGGTG 59.230 38.462 2.14 0.00 34.96 4.61
233 234 6.016777 GCATCTTCAAGTATGATAAAGGGTGG 60.017 42.308 2.14 0.00 34.96 4.61
234 235 6.884472 TCTTCAAGTATGATAAAGGGTGGA 57.116 37.500 0.00 0.00 34.96 4.02
235 236 6.889198 TCTTCAAGTATGATAAAGGGTGGAG 58.111 40.000 0.00 0.00 34.96 3.86
236 237 6.672218 TCTTCAAGTATGATAAAGGGTGGAGA 59.328 38.462 0.00 0.00 34.96 3.71
237 238 7.348274 TCTTCAAGTATGATAAAGGGTGGAGAT 59.652 37.037 0.00 0.00 34.96 2.75
238 239 8.561536 TTCAAGTATGATAAAGGGTGGAGATA 57.438 34.615 0.00 0.00 34.96 1.98
239 240 8.561536 TCAAGTATGATAAAGGGTGGAGATAA 57.438 34.615 0.00 0.00 0.00 1.75
240 241 8.429641 TCAAGTATGATAAAGGGTGGAGATAAC 58.570 37.037 0.00 0.00 0.00 1.89
241 242 7.931015 AGTATGATAAAGGGTGGAGATAACA 57.069 36.000 0.00 0.00 0.00 2.41
242 243 7.967908 AGTATGATAAAGGGTGGAGATAACAG 58.032 38.462 0.00 0.00 0.00 3.16
243 244 5.036117 TGATAAAGGGTGGAGATAACAGC 57.964 43.478 0.00 0.00 35.71 4.40
244 245 4.721776 TGATAAAGGGTGGAGATAACAGCT 59.278 41.667 0.00 0.00 36.62 4.24
245 246 5.191722 TGATAAAGGGTGGAGATAACAGCTT 59.808 40.000 0.00 0.00 36.62 3.74
246 247 3.636153 AAGGGTGGAGATAACAGCTTC 57.364 47.619 0.00 0.00 36.62 3.86
247 248 1.482593 AGGGTGGAGATAACAGCTTCG 59.517 52.381 0.00 0.00 36.62 3.79
248 249 1.480954 GGGTGGAGATAACAGCTTCGA 59.519 52.381 0.00 0.00 36.62 3.71
249 250 2.482142 GGGTGGAGATAACAGCTTCGAG 60.482 54.545 0.00 0.00 36.62 4.04
250 251 2.166664 GGTGGAGATAACAGCTTCGAGT 59.833 50.000 0.00 0.00 33.78 4.18
251 252 3.368531 GGTGGAGATAACAGCTTCGAGTT 60.369 47.826 0.00 0.00 33.78 3.01
252 253 3.614616 GTGGAGATAACAGCTTCGAGTTG 59.385 47.826 0.00 0.00 32.33 3.16
253 254 3.258372 TGGAGATAACAGCTTCGAGTTGT 59.742 43.478 0.00 0.00 41.54 3.32
254 255 4.461431 TGGAGATAACAGCTTCGAGTTGTA 59.539 41.667 5.18 0.00 38.76 2.41
255 256 5.047590 TGGAGATAACAGCTTCGAGTTGTAA 60.048 40.000 5.18 0.00 38.76 2.41
256 257 5.288952 GGAGATAACAGCTTCGAGTTGTAAC 59.711 44.000 5.18 0.00 38.76 2.50
257 258 6.026947 AGATAACAGCTTCGAGTTGTAACT 57.973 37.500 0.00 0.00 38.76 2.24
258 259 6.456501 AGATAACAGCTTCGAGTTGTAACTT 58.543 36.000 0.00 0.00 38.76 2.66
259 260 6.929606 AGATAACAGCTTCGAGTTGTAACTTT 59.070 34.615 0.00 0.00 38.76 2.66
260 261 5.813080 AACAGCTTCGAGTTGTAACTTTT 57.187 34.783 0.00 0.00 38.76 2.27
261 262 5.813080 ACAGCTTCGAGTTGTAACTTTTT 57.187 34.783 0.00 0.00 37.91 1.94
262 263 6.913873 ACAGCTTCGAGTTGTAACTTTTTA 57.086 33.333 0.00 0.00 37.91 1.52
263 264 7.492352 ACAGCTTCGAGTTGTAACTTTTTAT 57.508 32.000 0.00 0.00 37.91 1.40
264 265 7.573627 ACAGCTTCGAGTTGTAACTTTTTATC 58.426 34.615 0.00 0.00 37.91 1.75
265 266 7.441458 ACAGCTTCGAGTTGTAACTTTTTATCT 59.559 33.333 0.00 0.00 37.91 1.98
266 267 7.952637 CAGCTTCGAGTTGTAACTTTTTATCTC 59.047 37.037 0.00 0.00 39.88 2.75
267 268 7.656137 AGCTTCGAGTTGTAACTTTTTATCTCA 59.344 33.333 0.00 0.00 39.88 3.27
268 269 8.443937 GCTTCGAGTTGTAACTTTTTATCTCAT 58.556 33.333 0.00 0.00 39.88 2.90
332 333 9.639601 TGTATTTATAATGAGAGTGCTAATCGG 57.360 33.333 0.00 0.00 0.00 4.18
333 334 9.640963 GTATTTATAATGAGAGTGCTAATCGGT 57.359 33.333 0.00 0.00 0.00 4.69
335 336 7.946655 TTATAATGAGAGTGCTAATCGGTTG 57.053 36.000 0.00 0.00 0.00 3.77
336 337 2.010145 TGAGAGTGCTAATCGGTTGC 57.990 50.000 0.00 0.00 0.00 4.17
337 338 1.550524 TGAGAGTGCTAATCGGTTGCT 59.449 47.619 0.00 0.00 0.00 3.91
338 339 2.758423 TGAGAGTGCTAATCGGTTGCTA 59.242 45.455 0.00 0.00 0.00 3.49
339 340 3.384789 TGAGAGTGCTAATCGGTTGCTAT 59.615 43.478 0.00 0.00 0.00 2.97
340 341 4.141937 TGAGAGTGCTAATCGGTTGCTATT 60.142 41.667 0.00 0.00 0.00 1.73
341 342 5.068591 TGAGAGTGCTAATCGGTTGCTATTA 59.931 40.000 0.00 0.00 0.00 0.98
342 343 5.533482 AGAGTGCTAATCGGTTGCTATTAG 58.467 41.667 0.00 0.00 38.27 1.73
343 344 5.069251 AGAGTGCTAATCGGTTGCTATTAGT 59.931 40.000 0.00 0.00 37.78 2.24
344 345 5.671493 AGTGCTAATCGGTTGCTATTAGTT 58.329 37.500 0.00 0.00 37.78 2.24
345 346 6.812998 AGTGCTAATCGGTTGCTATTAGTTA 58.187 36.000 0.00 0.00 37.78 2.24
346 347 7.442656 AGTGCTAATCGGTTGCTATTAGTTAT 58.557 34.615 0.00 0.00 37.78 1.89
347 348 7.385205 AGTGCTAATCGGTTGCTATTAGTTATG 59.615 37.037 0.00 0.00 37.78 1.90
348 349 7.170998 GTGCTAATCGGTTGCTATTAGTTATGT 59.829 37.037 0.00 0.00 37.78 2.29
349 350 7.713507 TGCTAATCGGTTGCTATTAGTTATGTT 59.286 33.333 0.00 0.00 37.78 2.71
350 351 8.221766 GCTAATCGGTTGCTATTAGTTATGTTC 58.778 37.037 0.00 0.00 37.78 3.18
351 352 6.764877 ATCGGTTGCTATTAGTTATGTTCG 57.235 37.500 0.00 0.00 0.00 3.95
352 353 5.653507 TCGGTTGCTATTAGTTATGTTCGT 58.346 37.500 0.00 0.00 0.00 3.85
353 354 5.517411 TCGGTTGCTATTAGTTATGTTCGTG 59.483 40.000 0.00 0.00 0.00 4.35
354 355 5.290158 CGGTTGCTATTAGTTATGTTCGTGT 59.710 40.000 0.00 0.00 0.00 4.49
355 356 6.475207 GGTTGCTATTAGTTATGTTCGTGTG 58.525 40.000 0.00 0.00 0.00 3.82
356 357 6.311935 GGTTGCTATTAGTTATGTTCGTGTGA 59.688 38.462 0.00 0.00 0.00 3.58
357 358 7.148540 GGTTGCTATTAGTTATGTTCGTGTGAA 60.149 37.037 0.00 0.00 0.00 3.18
358 359 7.892778 TGCTATTAGTTATGTTCGTGTGAAA 57.107 32.000 0.00 0.00 35.46 2.69
359 360 8.487313 TGCTATTAGTTATGTTCGTGTGAAAT 57.513 30.769 0.00 0.00 35.46 2.17
360 361 8.941977 TGCTATTAGTTATGTTCGTGTGAAATT 58.058 29.630 0.00 0.00 35.46 1.82
361 362 9.422196 GCTATTAGTTATGTTCGTGTGAAATTC 57.578 33.333 0.00 0.00 35.46 2.17
362 363 9.619727 CTATTAGTTATGTTCGTGTGAAATTCG 57.380 33.333 0.00 0.00 35.46 3.34
363 364 5.917541 AGTTATGTTCGTGTGAAATTCGT 57.082 34.783 0.00 0.00 35.46 3.85
364 365 5.912528 AGTTATGTTCGTGTGAAATTCGTC 58.087 37.500 0.00 0.00 35.46 4.20
365 366 3.806316 ATGTTCGTGTGAAATTCGTCC 57.194 42.857 0.00 0.00 35.46 4.79
366 367 2.552031 TGTTCGTGTGAAATTCGTCCA 58.448 42.857 0.00 0.00 35.46 4.02
367 368 2.542178 TGTTCGTGTGAAATTCGTCCAG 59.458 45.455 0.00 0.00 35.46 3.86
368 369 1.144969 TCGTGTGAAATTCGTCCAGC 58.855 50.000 0.00 0.00 0.00 4.85
369 370 0.865111 CGTGTGAAATTCGTCCAGCA 59.135 50.000 0.00 0.00 0.00 4.41
370 371 1.464608 CGTGTGAAATTCGTCCAGCAT 59.535 47.619 0.00 0.00 0.00 3.79
371 372 2.474526 CGTGTGAAATTCGTCCAGCATC 60.475 50.000 0.00 0.00 0.00 3.91
372 373 2.083774 TGTGAAATTCGTCCAGCATCC 58.916 47.619 0.00 0.00 0.00 3.51
373 374 2.290260 TGTGAAATTCGTCCAGCATCCT 60.290 45.455 0.00 0.00 0.00 3.24
374 375 2.352960 GTGAAATTCGTCCAGCATCCTC 59.647 50.000 0.00 0.00 0.00 3.71
375 376 2.027285 TGAAATTCGTCCAGCATCCTCA 60.027 45.455 0.00 0.00 0.00 3.86
376 377 2.029838 AATTCGTCCAGCATCCTCAC 57.970 50.000 0.00 0.00 0.00 3.51
377 378 1.198713 ATTCGTCCAGCATCCTCACT 58.801 50.000 0.00 0.00 0.00 3.41
378 379 0.976641 TTCGTCCAGCATCCTCACTT 59.023 50.000 0.00 0.00 0.00 3.16
379 380 1.847328 TCGTCCAGCATCCTCACTTA 58.153 50.000 0.00 0.00 0.00 2.24
380 381 2.388735 TCGTCCAGCATCCTCACTTAT 58.611 47.619 0.00 0.00 0.00 1.73
381 382 2.766263 TCGTCCAGCATCCTCACTTATT 59.234 45.455 0.00 0.00 0.00 1.40
382 383 3.958147 TCGTCCAGCATCCTCACTTATTA 59.042 43.478 0.00 0.00 0.00 0.98
383 384 4.588951 TCGTCCAGCATCCTCACTTATTAT 59.411 41.667 0.00 0.00 0.00 1.28
384 385 4.687948 CGTCCAGCATCCTCACTTATTATG 59.312 45.833 0.00 0.00 0.00 1.90
385 386 4.999950 GTCCAGCATCCTCACTTATTATGG 59.000 45.833 0.00 0.00 0.00 2.74
386 387 4.660303 TCCAGCATCCTCACTTATTATGGT 59.340 41.667 0.00 0.00 0.00 3.55
387 388 4.758674 CCAGCATCCTCACTTATTATGGTG 59.241 45.833 0.00 0.00 42.67 4.17
388 389 5.371526 CAGCATCCTCACTTATTATGGTGT 58.628 41.667 0.00 0.00 39.81 4.16
389 390 6.464322 CCAGCATCCTCACTTATTATGGTGTA 60.464 42.308 10.71 0.00 41.91 2.90
390 391 6.425114 CAGCATCCTCACTTATTATGGTGTAC 59.575 42.308 0.00 0.00 39.81 2.90
391 392 5.701290 GCATCCTCACTTATTATGGTGTACC 59.299 44.000 0.00 0.00 35.26 3.34
406 407 4.396790 TGGTGTACCATTTTATTTCTCCGC 59.603 41.667 0.00 0.00 42.01 5.54
407 408 4.396790 GGTGTACCATTTTATTTCTCCGCA 59.603 41.667 0.00 0.00 35.64 5.69
408 409 5.329493 GTGTACCATTTTATTTCTCCGCAC 58.671 41.667 0.00 0.00 0.00 5.34
409 410 5.123344 GTGTACCATTTTATTTCTCCGCACT 59.877 40.000 0.00 0.00 0.00 4.40
410 411 6.314400 GTGTACCATTTTATTTCTCCGCACTA 59.686 38.462 0.00 0.00 0.00 2.74
411 412 6.879993 TGTACCATTTTATTTCTCCGCACTAA 59.120 34.615 0.00 0.00 0.00 2.24
412 413 7.554835 TGTACCATTTTATTTCTCCGCACTAAT 59.445 33.333 0.00 0.00 0.00 1.73
413 414 7.404671 ACCATTTTATTTCTCCGCACTAATT 57.595 32.000 0.00 0.00 0.00 1.40
414 415 7.257722 ACCATTTTATTTCTCCGCACTAATTG 58.742 34.615 0.00 0.00 0.00 2.32
415 416 7.122055 ACCATTTTATTTCTCCGCACTAATTGA 59.878 33.333 0.00 0.00 0.00 2.57
416 417 7.645340 CCATTTTATTTCTCCGCACTAATTGAG 59.355 37.037 0.00 0.00 0.00 3.02
417 418 7.681939 TTTTATTTCTCCGCACTAATTGAGT 57.318 32.000 0.00 0.00 39.82 3.41
418 419 8.780846 TTTTATTTCTCCGCACTAATTGAGTA 57.219 30.769 0.00 0.00 35.64 2.59
419 420 7.766219 TTATTTCTCCGCACTAATTGAGTAC 57.234 36.000 0.00 0.00 35.64 2.73
420 421 3.795623 TCTCCGCACTAATTGAGTACC 57.204 47.619 0.00 0.00 35.64 3.34
421 422 3.093814 TCTCCGCACTAATTGAGTACCA 58.906 45.455 0.00 0.00 35.64 3.25
422 423 3.704566 TCTCCGCACTAATTGAGTACCAT 59.295 43.478 0.00 0.00 35.64 3.55
423 424 4.161565 TCTCCGCACTAATTGAGTACCATT 59.838 41.667 0.00 0.00 35.64 3.16
424 425 4.188462 TCCGCACTAATTGAGTACCATTG 58.812 43.478 0.00 0.00 35.64 2.82
425 426 3.938963 CCGCACTAATTGAGTACCATTGT 59.061 43.478 0.00 0.00 35.64 2.71
426 427 4.201812 CCGCACTAATTGAGTACCATTGTG 60.202 45.833 0.00 0.00 35.64 3.33
427 428 4.629634 CGCACTAATTGAGTACCATTGTGA 59.370 41.667 0.00 0.00 35.64 3.58
428 429 5.121611 CGCACTAATTGAGTACCATTGTGAA 59.878 40.000 0.00 0.00 35.64 3.18
429 430 6.348132 CGCACTAATTGAGTACCATTGTGAAA 60.348 38.462 0.00 0.00 35.64 2.69
430 431 7.367285 GCACTAATTGAGTACCATTGTGAAAA 58.633 34.615 0.00 0.00 35.64 2.29
431 432 7.865385 GCACTAATTGAGTACCATTGTGAAAAA 59.135 33.333 0.00 0.00 35.64 1.94
455 456 9.696917 AAAAATTTATGAGCACTTCTTCGAATT 57.303 25.926 0.00 0.00 0.00 2.17
456 457 9.696917 AAAATTTATGAGCACTTCTTCGAATTT 57.303 25.926 0.00 0.00 0.00 1.82
458 459 9.994432 AATTTATGAGCACTTCTTCGAATTTAG 57.006 29.630 0.00 0.00 0.00 1.85
459 460 8.547967 TTTATGAGCACTTCTTCGAATTTAGT 57.452 30.769 0.00 0.00 0.00 2.24
460 461 9.647797 TTTATGAGCACTTCTTCGAATTTAGTA 57.352 29.630 0.00 0.00 0.00 1.82
461 462 9.647797 TTATGAGCACTTCTTCGAATTTAGTAA 57.352 29.630 0.00 0.00 0.00 2.24
462 463 7.956420 TGAGCACTTCTTCGAATTTAGTAAA 57.044 32.000 0.00 0.00 0.00 2.01
463 464 8.373048 TGAGCACTTCTTCGAATTTAGTAAAA 57.627 30.769 0.00 0.00 0.00 1.52
464 465 8.832521 TGAGCACTTCTTCGAATTTAGTAAAAA 58.167 29.630 0.00 0.00 0.00 1.94
465 466 9.104126 GAGCACTTCTTCGAATTTAGTAAAAAC 57.896 33.333 0.00 0.00 0.00 2.43
466 467 8.837389 AGCACTTCTTCGAATTTAGTAAAAACT 58.163 29.630 0.00 0.00 0.00 2.66
472 473 8.715088 TCTTCGAATTTAGTAAAAACTACTGGC 58.285 33.333 0.00 0.00 0.00 4.85
473 474 8.611654 TTCGAATTTAGTAAAAACTACTGGCT 57.388 30.769 0.00 0.00 0.00 4.75
474 475 9.709495 TTCGAATTTAGTAAAAACTACTGGCTA 57.291 29.630 0.00 0.00 0.00 3.93
475 476 9.709495 TCGAATTTAGTAAAAACTACTGGCTAA 57.291 29.630 0.00 0.00 0.00 3.09
480 481 8.857694 TTAGTAAAAACTACTGGCTAAATGCT 57.142 30.769 0.00 0.00 42.39 3.79
481 482 7.761038 AGTAAAAACTACTGGCTAAATGCTT 57.239 32.000 0.00 0.00 42.39 3.91
482 483 7.593825 AGTAAAAACTACTGGCTAAATGCTTG 58.406 34.615 0.00 0.00 42.39 4.01
483 484 6.405278 AAAAACTACTGGCTAAATGCTTGT 57.595 33.333 0.00 0.00 42.39 3.16
484 485 5.376854 AAACTACTGGCTAAATGCTTGTG 57.623 39.130 0.00 0.00 42.39 3.33
485 486 2.749621 ACTACTGGCTAAATGCTTGTGC 59.250 45.455 0.00 0.00 42.39 4.57
486 487 0.523072 ACTGGCTAAATGCTTGTGCG 59.477 50.000 0.00 0.00 43.34 5.34
487 488 0.523072 CTGGCTAAATGCTTGTGCGT 59.477 50.000 0.00 0.00 43.34 5.24
489 490 2.155279 TGGCTAAATGCTTGTGCGTTA 58.845 42.857 0.00 0.00 46.57 3.18
490 491 2.095466 TGGCTAAATGCTTGTGCGTTAC 60.095 45.455 0.00 0.00 46.57 2.50
491 492 2.161609 GGCTAAATGCTTGTGCGTTACT 59.838 45.455 0.00 0.00 46.57 2.24
492 493 3.372822 GGCTAAATGCTTGTGCGTTACTA 59.627 43.478 0.00 0.00 46.57 1.82
493 494 4.035208 GGCTAAATGCTTGTGCGTTACTAT 59.965 41.667 0.00 0.00 46.57 2.12
494 495 4.963953 GCTAAATGCTTGTGCGTTACTATG 59.036 41.667 0.00 0.00 46.57 2.23
495 496 4.355543 AAATGCTTGTGCGTTACTATGG 57.644 40.909 0.00 0.00 46.57 2.74
496 497 2.753055 TGCTTGTGCGTTACTATGGA 57.247 45.000 0.00 0.00 43.34 3.41
497 498 3.046968 TGCTTGTGCGTTACTATGGAA 57.953 42.857 0.00 0.00 43.34 3.53
498 499 3.000041 TGCTTGTGCGTTACTATGGAAG 59.000 45.455 0.00 0.00 43.34 3.46
499 500 3.000727 GCTTGTGCGTTACTATGGAAGT 58.999 45.455 0.00 0.00 42.62 3.01
500 501 3.435671 GCTTGTGCGTTACTATGGAAGTT 59.564 43.478 0.00 0.00 39.80 2.66
504 505 7.625606 GCTTGTGCGTTACTATGGAAGTTAATT 60.626 37.037 0.00 0.00 39.80 1.40
506 507 8.101654 TGTGCGTTACTATGGAAGTTAATTTT 57.898 30.769 0.00 0.00 39.80 1.82
546 547 8.466798 AGTTGTTTAAATTATGCTACATGGTCC 58.533 33.333 0.00 0.00 0.00 4.46
549 550 8.412456 TGTTTAAATTATGCTACATGGTCCATG 58.588 33.333 27.31 27.31 46.18 3.66
551 552 6.889301 AAATTATGCTACATGGTCCATGAG 57.111 37.500 33.99 25.50 43.81 2.90
552 553 5.573380 ATTATGCTACATGGTCCATGAGT 57.427 39.130 33.99 17.77 43.81 3.41
554 555 3.266510 TGCTACATGGTCCATGAGTTC 57.733 47.619 33.99 20.06 43.81 3.01
555 556 2.205074 GCTACATGGTCCATGAGTTCG 58.795 52.381 33.99 18.28 43.81 3.95
556 557 2.205074 CTACATGGTCCATGAGTTCGC 58.795 52.381 33.99 0.00 43.81 4.70
557 558 0.324614 ACATGGTCCATGAGTTCGCA 59.675 50.000 33.99 0.00 43.81 5.10
558 559 0.729116 CATGGTCCATGAGTTCGCAC 59.271 55.000 25.39 0.00 43.81 5.34
560 561 0.320683 TGGTCCATGAGTTCGCACAG 60.321 55.000 0.00 0.00 0.00 3.66
561 562 0.037326 GGTCCATGAGTTCGCACAGA 60.037 55.000 0.00 0.00 0.00 3.41
562 563 1.608025 GGTCCATGAGTTCGCACAGAA 60.608 52.381 0.00 0.00 36.31 3.02
564 565 2.744202 GTCCATGAGTTCGCACAGAATT 59.256 45.455 0.00 0.00 41.49 2.17
565 566 3.189287 GTCCATGAGTTCGCACAGAATTT 59.811 43.478 0.00 0.00 41.49 1.82
566 567 4.391830 GTCCATGAGTTCGCACAGAATTTA 59.608 41.667 0.00 0.00 41.49 1.40
568 569 5.471797 TCCATGAGTTCGCACAGAATTTAAA 59.528 36.000 0.00 0.00 41.49 1.52
569 570 6.016693 TCCATGAGTTCGCACAGAATTTAAAA 60.017 34.615 0.00 0.00 41.49 1.52
570 571 6.088085 CCATGAGTTCGCACAGAATTTAAAAC 59.912 38.462 0.00 0.00 41.49 2.43
572 573 6.734137 TGAGTTCGCACAGAATTTAAAACAT 58.266 32.000 0.00 0.00 41.49 2.71
573 574 6.855914 TGAGTTCGCACAGAATTTAAAACATC 59.144 34.615 0.00 0.00 41.49 3.06
574 575 6.734137 AGTTCGCACAGAATTTAAAACATCA 58.266 32.000 0.00 0.00 41.49 3.07
575 576 7.370383 AGTTCGCACAGAATTTAAAACATCAT 58.630 30.769 0.00 0.00 41.49 2.45
576 577 7.538678 AGTTCGCACAGAATTTAAAACATCATC 59.461 33.333 0.00 0.00 41.49 2.92
578 579 7.592938 TCGCACAGAATTTAAAACATCATCTT 58.407 30.769 0.00 0.00 0.00 2.40
650 651 2.708216 TTGCCCTCAGATGCGAATTA 57.292 45.000 0.00 0.00 0.00 1.40
691 692 3.973516 TGCGCACCGACTCGTTCT 61.974 61.111 5.66 0.00 0.00 3.01
878 939 3.295273 ACGGCGACAGAGAGCACA 61.295 61.111 16.62 0.00 34.54 4.57
988 1066 1.515954 GGCGTTGAGATCCCTTCGA 59.484 57.895 0.00 0.00 0.00 3.71
1126 1204 1.699730 TTCTCAGACACCGAGGAACA 58.300 50.000 0.00 0.00 0.00 3.18
1143 1221 4.159879 AGGAACAAGAATCGTCCGTTCTAT 59.840 41.667 0.00 0.00 37.09 1.98
1375 1453 1.482593 GAGCTCCGAAAGAAGGGATGA 59.517 52.381 0.87 0.00 0.00 2.92
1778 2115 2.586648 AAAGGTTACTCTTGGGCCAG 57.413 50.000 6.23 0.96 0.00 4.85
1822 2159 2.107204 CAGGCTAGACTAATGGGCCAAT 59.893 50.000 11.89 4.19 44.60 3.16
1964 2443 3.366985 CCGGAGCCAAACAATTAAGGTTC 60.367 47.826 0.00 0.00 0.00 3.62
2046 2525 5.307204 ACCAAAATGTCATGGAAAATGTGG 58.693 37.500 0.00 0.00 39.12 4.17
2057 2536 2.157738 GAAAATGTGGCTCAGCTCTGT 58.842 47.619 0.00 0.00 0.00 3.41
2214 3811 1.830086 GCGTGGTTTGTGGTGTTTAC 58.170 50.000 0.00 0.00 0.00 2.01
2256 3967 3.571401 AGGACAGATGGCAAAACTTTGAG 59.429 43.478 6.37 0.00 40.55 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.547913 TGCATGCACAAATAGCTTCG 57.452 45.000 18.46 0.00 0.00 3.79
81 82 7.350744 TCCATGTTAGCTAATTAAGGACGTA 57.649 36.000 9.88 0.00 0.00 3.57
82 83 6.229936 TCCATGTTAGCTAATTAAGGACGT 57.770 37.500 9.88 0.00 0.00 4.34
83 84 6.984474 TCTTCCATGTTAGCTAATTAAGGACG 59.016 38.462 9.88 11.96 0.00 4.79
84 85 8.732746 TTCTTCCATGTTAGCTAATTAAGGAC 57.267 34.615 9.88 0.00 0.00 3.85
85 86 9.920946 ATTTCTTCCATGTTAGCTAATTAAGGA 57.079 29.630 9.88 11.77 0.00 3.36
107 108 9.080915 CCTAGCTTGCAAAAGAAAATAGATTTC 57.919 33.333 0.00 0.00 46.45 2.17
108 109 8.037166 CCCTAGCTTGCAAAAGAAAATAGATTT 58.963 33.333 0.00 0.00 0.00 2.17
109 110 7.364144 CCCCTAGCTTGCAAAAGAAAATAGATT 60.364 37.037 0.00 0.00 0.00 2.40
110 111 6.097412 CCCCTAGCTTGCAAAAGAAAATAGAT 59.903 38.462 0.00 0.00 0.00 1.98
111 112 5.418840 CCCCTAGCTTGCAAAAGAAAATAGA 59.581 40.000 0.00 0.00 0.00 1.98
112 113 5.654497 CCCCTAGCTTGCAAAAGAAAATAG 58.346 41.667 0.00 0.00 0.00 1.73
114 115 3.306989 GCCCCTAGCTTGCAAAAGAAAAT 60.307 43.478 0.00 0.00 38.99 1.82
115 116 2.037121 GCCCCTAGCTTGCAAAAGAAAA 59.963 45.455 0.00 0.00 38.99 2.29
117 118 1.256812 GCCCCTAGCTTGCAAAAGAA 58.743 50.000 0.00 0.00 38.99 2.52
120 121 1.609210 GGGCCCCTAGCTTGCAAAA 60.609 57.895 12.23 0.00 43.05 2.44
121 122 2.037208 GGGCCCCTAGCTTGCAAA 59.963 61.111 12.23 0.00 43.05 3.68
122 123 2.941025 AGGGCCCCTAGCTTGCAA 60.941 61.111 21.43 0.00 43.05 4.08
126 127 1.898190 TAGGACAGGGCCCCTAGCTT 61.898 60.000 21.43 4.65 43.05 3.74
128 129 1.839296 CTAGGACAGGGCCCCTAGC 60.839 68.421 21.43 5.45 43.69 3.42
129 130 4.629442 CTAGGACAGGGCCCCTAG 57.371 66.667 21.43 17.96 44.07 3.02
130 131 2.285868 GCTAGGACAGGGCCCCTA 59.714 66.667 21.43 11.94 34.11 3.53
131 132 4.825679 GGCTAGGACAGGGCCCCT 62.826 72.222 21.43 11.31 39.96 4.79
135 136 0.753111 CAATTGGGCTAGGACAGGGC 60.753 60.000 0.00 0.00 0.00 5.19
136 137 0.625849 ACAATTGGGCTAGGACAGGG 59.374 55.000 10.83 0.00 0.00 4.45
137 138 1.281867 TCACAATTGGGCTAGGACAGG 59.718 52.381 10.83 0.00 0.00 4.00
138 139 2.026822 ACTCACAATTGGGCTAGGACAG 60.027 50.000 10.83 0.00 0.00 3.51
139 140 1.985159 ACTCACAATTGGGCTAGGACA 59.015 47.619 10.83 0.00 0.00 4.02
140 141 2.359900 CACTCACAATTGGGCTAGGAC 58.640 52.381 10.83 0.00 0.00 3.85
141 142 1.281867 CCACTCACAATTGGGCTAGGA 59.718 52.381 10.83 0.00 0.00 2.94
142 143 1.281867 TCCACTCACAATTGGGCTAGG 59.718 52.381 10.83 7.99 33.25 3.02
143 144 2.026822 ACTCCACTCACAATTGGGCTAG 60.027 50.000 10.83 2.44 33.25 3.42
144 145 1.985159 ACTCCACTCACAATTGGGCTA 59.015 47.619 10.83 0.00 33.25 3.93
145 146 0.773644 ACTCCACTCACAATTGGGCT 59.226 50.000 10.83 0.00 33.25 5.19
146 147 2.027192 TCTACTCCACTCACAATTGGGC 60.027 50.000 10.83 0.00 33.25 5.36
147 148 3.981071 TCTACTCCACTCACAATTGGG 57.019 47.619 10.83 5.72 33.25 4.12
148 149 5.089970 TCATCTACTCCACTCACAATTGG 57.910 43.478 10.83 0.00 0.00 3.16
149 150 8.146412 TGATATCATCTACTCCACTCACAATTG 58.854 37.037 3.24 3.24 0.00 2.32
150 151 8.147058 GTGATATCATCTACTCCACTCACAATT 58.853 37.037 9.02 0.00 32.73 2.32
151 152 7.508636 AGTGATATCATCTACTCCACTCACAAT 59.491 37.037 9.02 0.00 34.42 2.71
152 153 6.836007 AGTGATATCATCTACTCCACTCACAA 59.164 38.462 9.02 0.00 34.42 3.33
153 154 6.368805 AGTGATATCATCTACTCCACTCACA 58.631 40.000 9.02 0.00 34.42 3.58
154 155 6.892658 AGTGATATCATCTACTCCACTCAC 57.107 41.667 9.02 0.00 0.00 3.51
155 156 6.657117 GCTAGTGATATCATCTACTCCACTCA 59.343 42.308 9.02 0.00 35.38 3.41
156 157 6.884295 AGCTAGTGATATCATCTACTCCACTC 59.116 42.308 9.02 0.00 35.38 3.51
157 158 6.658816 CAGCTAGTGATATCATCTACTCCACT 59.341 42.308 9.02 1.08 37.23 4.00
158 159 6.657117 TCAGCTAGTGATATCATCTACTCCAC 59.343 42.308 9.02 0.00 0.00 4.02
159 160 6.784031 TCAGCTAGTGATATCATCTACTCCA 58.216 40.000 9.02 0.00 0.00 3.86
160 161 6.884295 ACTCAGCTAGTGATATCATCTACTCC 59.116 42.308 9.02 0.00 36.93 3.85
161 162 7.921786 ACTCAGCTAGTGATATCATCTACTC 57.078 40.000 9.02 5.57 36.93 2.59
162 163 9.448438 CTAACTCAGCTAGTGATATCATCTACT 57.552 37.037 9.02 3.79 38.88 2.57
163 164 9.226606 ACTAACTCAGCTAGTGATATCATCTAC 57.773 37.037 9.02 7.43 38.88 2.59
164 165 9.225436 CACTAACTCAGCTAGTGATATCATCTA 57.775 37.037 9.34 10.86 46.12 1.98
165 166 7.723616 ACACTAACTCAGCTAGTGATATCATCT 59.276 37.037 20.03 10.31 46.12 2.90
166 167 7.807433 CACACTAACTCAGCTAGTGATATCATC 59.193 40.741 20.03 3.10 46.12 2.92
167 168 7.656412 CACACTAACTCAGCTAGTGATATCAT 58.344 38.462 20.03 1.07 46.12 2.45
168 169 6.460261 GCACACTAACTCAGCTAGTGATATCA 60.460 42.308 20.03 0.00 46.12 2.15
169 170 5.918011 GCACACTAACTCAGCTAGTGATATC 59.082 44.000 20.03 0.00 46.12 1.63
170 171 5.360999 TGCACACTAACTCAGCTAGTGATAT 59.639 40.000 20.03 0.00 46.12 1.63
171 172 4.705023 TGCACACTAACTCAGCTAGTGATA 59.295 41.667 20.03 4.91 46.12 2.15
172 173 3.511540 TGCACACTAACTCAGCTAGTGAT 59.488 43.478 20.03 3.91 46.12 3.06
173 174 2.890945 TGCACACTAACTCAGCTAGTGA 59.109 45.455 20.03 0.00 46.12 3.41
175 176 3.654414 GTTGCACACTAACTCAGCTAGT 58.346 45.455 0.00 0.00 41.49 2.57
176 177 2.663602 CGTTGCACACTAACTCAGCTAG 59.336 50.000 0.00 0.00 0.00 3.42
177 178 2.609491 CCGTTGCACACTAACTCAGCTA 60.609 50.000 0.00 0.00 0.00 3.32
178 179 1.502231 CGTTGCACACTAACTCAGCT 58.498 50.000 0.00 0.00 0.00 4.24
179 180 0.512952 CCGTTGCACACTAACTCAGC 59.487 55.000 0.00 0.00 0.00 4.26
180 181 1.865865 ACCGTTGCACACTAACTCAG 58.134 50.000 0.00 0.00 0.00 3.35
181 182 1.937223 CAACCGTTGCACACTAACTCA 59.063 47.619 0.00 0.00 0.00 3.41
182 183 2.206750 TCAACCGTTGCACACTAACTC 58.793 47.619 6.37 0.00 0.00 3.01
183 184 2.319136 TCAACCGTTGCACACTAACT 57.681 45.000 6.37 0.00 0.00 2.24
184 185 2.610374 TCTTCAACCGTTGCACACTAAC 59.390 45.455 6.37 0.00 0.00 2.34
185 186 2.907634 TCTTCAACCGTTGCACACTAA 58.092 42.857 6.37 0.00 0.00 2.24
186 187 2.605837 TCTTCAACCGTTGCACACTA 57.394 45.000 6.37 0.00 0.00 2.74
187 188 1.967319 ATCTTCAACCGTTGCACACT 58.033 45.000 6.37 0.00 0.00 3.55
188 189 2.412847 GCTATCTTCAACCGTTGCACAC 60.413 50.000 6.37 0.00 0.00 3.82
189 190 1.804151 GCTATCTTCAACCGTTGCACA 59.196 47.619 6.37 0.00 0.00 4.57
190 191 1.804151 TGCTATCTTCAACCGTTGCAC 59.196 47.619 6.37 0.00 0.00 4.57
191 192 2.177394 TGCTATCTTCAACCGTTGCA 57.823 45.000 6.37 0.00 0.00 4.08
192 193 2.939103 AGATGCTATCTTCAACCGTTGC 59.061 45.455 6.37 0.00 35.76 4.17
203 204 9.941325 CCTTTATCATACTTGAAGATGCTATCT 57.059 33.333 0.00 0.00 42.61 1.98
204 205 9.160496 CCCTTTATCATACTTGAAGATGCTATC 57.840 37.037 0.00 0.00 34.96 2.08
205 206 8.664079 ACCCTTTATCATACTTGAAGATGCTAT 58.336 33.333 0.00 0.00 34.96 2.97
206 207 7.933577 CACCCTTTATCATACTTGAAGATGCTA 59.066 37.037 0.00 0.00 34.96 3.49
207 208 6.769822 CACCCTTTATCATACTTGAAGATGCT 59.230 38.462 0.00 0.00 34.96 3.79
208 209 6.016777 CCACCCTTTATCATACTTGAAGATGC 60.017 42.308 0.00 0.00 34.96 3.91
209 210 7.282585 TCCACCCTTTATCATACTTGAAGATG 58.717 38.462 0.00 0.00 34.96 2.90
210 211 7.348274 TCTCCACCCTTTATCATACTTGAAGAT 59.652 37.037 0.00 0.00 34.96 2.40
211 212 6.672218 TCTCCACCCTTTATCATACTTGAAGA 59.328 38.462 0.00 0.00 34.96 2.87
212 213 6.889198 TCTCCACCCTTTATCATACTTGAAG 58.111 40.000 0.00 0.00 34.96 3.02
213 214 6.884472 TCTCCACCCTTTATCATACTTGAA 57.116 37.500 0.00 0.00 34.96 2.69
214 215 8.429641 GTTATCTCCACCCTTTATCATACTTGA 58.570 37.037 0.00 0.00 36.00 3.02
215 216 8.210946 TGTTATCTCCACCCTTTATCATACTTG 58.789 37.037 0.00 0.00 0.00 3.16
216 217 8.331931 TGTTATCTCCACCCTTTATCATACTT 57.668 34.615 0.00 0.00 0.00 2.24
217 218 7.473511 GCTGTTATCTCCACCCTTTATCATACT 60.474 40.741 0.00 0.00 0.00 2.12
218 219 6.651225 GCTGTTATCTCCACCCTTTATCATAC 59.349 42.308 0.00 0.00 0.00 2.39
219 220 6.558775 AGCTGTTATCTCCACCCTTTATCATA 59.441 38.462 0.00 0.00 0.00 2.15
220 221 5.370880 AGCTGTTATCTCCACCCTTTATCAT 59.629 40.000 0.00 0.00 0.00 2.45
221 222 4.721776 AGCTGTTATCTCCACCCTTTATCA 59.278 41.667 0.00 0.00 0.00 2.15
222 223 5.297569 AGCTGTTATCTCCACCCTTTATC 57.702 43.478 0.00 0.00 0.00 1.75
223 224 5.685075 CGAAGCTGTTATCTCCACCCTTTAT 60.685 44.000 0.00 0.00 0.00 1.40
224 225 4.382685 CGAAGCTGTTATCTCCACCCTTTA 60.383 45.833 0.00 0.00 0.00 1.85
225 226 3.619979 CGAAGCTGTTATCTCCACCCTTT 60.620 47.826 0.00 0.00 0.00 3.11
226 227 2.093447 CGAAGCTGTTATCTCCACCCTT 60.093 50.000 0.00 0.00 0.00 3.95
227 228 1.482593 CGAAGCTGTTATCTCCACCCT 59.517 52.381 0.00 0.00 0.00 4.34
228 229 1.480954 TCGAAGCTGTTATCTCCACCC 59.519 52.381 0.00 0.00 0.00 4.61
229 230 2.166664 ACTCGAAGCTGTTATCTCCACC 59.833 50.000 0.00 0.00 0.00 4.61
230 231 3.512033 ACTCGAAGCTGTTATCTCCAC 57.488 47.619 0.00 0.00 0.00 4.02
231 232 3.258372 ACAACTCGAAGCTGTTATCTCCA 59.742 43.478 0.00 0.00 0.00 3.86
232 233 3.851098 ACAACTCGAAGCTGTTATCTCC 58.149 45.455 0.00 0.00 0.00 3.71
233 234 6.094061 AGTTACAACTCGAAGCTGTTATCTC 58.906 40.000 0.00 0.00 32.86 2.75
234 235 6.026947 AGTTACAACTCGAAGCTGTTATCT 57.973 37.500 0.00 0.00 32.86 1.98
235 236 6.707599 AAGTTACAACTCGAAGCTGTTATC 57.292 37.500 0.00 0.00 38.57 1.75
236 237 7.492352 AAAAGTTACAACTCGAAGCTGTTAT 57.508 32.000 0.00 0.00 38.57 1.89
237 238 6.913873 AAAAGTTACAACTCGAAGCTGTTA 57.086 33.333 0.00 0.00 38.57 2.41
238 239 5.813080 AAAAGTTACAACTCGAAGCTGTT 57.187 34.783 0.00 0.00 38.57 3.16
239 240 5.813080 AAAAAGTTACAACTCGAAGCTGT 57.187 34.783 0.00 0.00 38.57 4.40
240 241 7.797819 AGATAAAAAGTTACAACTCGAAGCTG 58.202 34.615 0.00 0.00 38.57 4.24
241 242 7.656137 TGAGATAAAAAGTTACAACTCGAAGCT 59.344 33.333 0.00 0.00 38.57 3.74
242 243 7.793902 TGAGATAAAAAGTTACAACTCGAAGC 58.206 34.615 0.00 0.00 38.57 3.86
306 307 9.639601 CCGATTAGCACTCTCATTATAAATACA 57.360 33.333 0.00 0.00 0.00 2.29
307 308 9.640963 ACCGATTAGCACTCTCATTATAAATAC 57.359 33.333 0.00 0.00 0.00 1.89
309 310 8.993121 CAACCGATTAGCACTCTCATTATAAAT 58.007 33.333 0.00 0.00 0.00 1.40
310 311 7.042051 GCAACCGATTAGCACTCTCATTATAAA 60.042 37.037 0.00 0.00 0.00 1.40
311 312 6.423905 GCAACCGATTAGCACTCTCATTATAA 59.576 38.462 0.00 0.00 0.00 0.98
312 313 5.926542 GCAACCGATTAGCACTCTCATTATA 59.073 40.000 0.00 0.00 0.00 0.98
313 314 4.752101 GCAACCGATTAGCACTCTCATTAT 59.248 41.667 0.00 0.00 0.00 1.28
314 315 4.119862 GCAACCGATTAGCACTCTCATTA 58.880 43.478 0.00 0.00 0.00 1.90
315 316 2.939103 GCAACCGATTAGCACTCTCATT 59.061 45.455 0.00 0.00 0.00 2.57
316 317 2.169352 AGCAACCGATTAGCACTCTCAT 59.831 45.455 0.00 0.00 0.00 2.90
317 318 1.550524 AGCAACCGATTAGCACTCTCA 59.449 47.619 0.00 0.00 0.00 3.27
318 319 2.301577 AGCAACCGATTAGCACTCTC 57.698 50.000 0.00 0.00 0.00 3.20
319 320 4.408182 AATAGCAACCGATTAGCACTCT 57.592 40.909 0.00 0.00 0.00 3.24
320 321 5.290386 ACTAATAGCAACCGATTAGCACTC 58.710 41.667 0.00 0.00 39.09 3.51
321 322 5.277857 ACTAATAGCAACCGATTAGCACT 57.722 39.130 0.00 0.00 39.09 4.40
322 323 5.986004 AACTAATAGCAACCGATTAGCAC 57.014 39.130 0.00 0.00 39.09 4.40
323 324 7.214381 ACATAACTAATAGCAACCGATTAGCA 58.786 34.615 0.00 0.00 39.09 3.49
324 325 7.653767 ACATAACTAATAGCAACCGATTAGC 57.346 36.000 0.00 0.00 39.09 3.09
325 326 8.425491 CGAACATAACTAATAGCAACCGATTAG 58.575 37.037 0.00 0.00 40.42 1.73
326 327 7.922278 ACGAACATAACTAATAGCAACCGATTA 59.078 33.333 0.00 0.00 0.00 1.75
327 328 6.759827 ACGAACATAACTAATAGCAACCGATT 59.240 34.615 0.00 0.00 0.00 3.34
328 329 6.200286 CACGAACATAACTAATAGCAACCGAT 59.800 38.462 0.00 0.00 0.00 4.18
329 330 5.517411 CACGAACATAACTAATAGCAACCGA 59.483 40.000 0.00 0.00 0.00 4.69
330 331 5.290158 ACACGAACATAACTAATAGCAACCG 59.710 40.000 0.00 0.00 0.00 4.44
331 332 6.311935 TCACACGAACATAACTAATAGCAACC 59.688 38.462 0.00 0.00 0.00 3.77
332 333 7.285783 TCACACGAACATAACTAATAGCAAC 57.714 36.000 0.00 0.00 0.00 4.17
333 334 7.892778 TTCACACGAACATAACTAATAGCAA 57.107 32.000 0.00 0.00 0.00 3.91
334 335 7.892778 TTTCACACGAACATAACTAATAGCA 57.107 32.000 0.00 0.00 0.00 3.49
335 336 9.422196 GAATTTCACACGAACATAACTAATAGC 57.578 33.333 0.00 0.00 0.00 2.97
336 337 9.619727 CGAATTTCACACGAACATAACTAATAG 57.380 33.333 0.00 0.00 0.00 1.73
337 338 9.142515 ACGAATTTCACACGAACATAACTAATA 57.857 29.630 0.00 0.00 0.00 0.98
338 339 8.025243 ACGAATTTCACACGAACATAACTAAT 57.975 30.769 0.00 0.00 0.00 1.73
339 340 7.359431 GGACGAATTTCACACGAACATAACTAA 60.359 37.037 0.00 0.00 0.00 2.24
340 341 6.089820 GGACGAATTTCACACGAACATAACTA 59.910 38.462 0.00 0.00 0.00 2.24
341 342 5.107220 GGACGAATTTCACACGAACATAACT 60.107 40.000 0.00 0.00 0.00 2.24
342 343 5.077424 GGACGAATTTCACACGAACATAAC 58.923 41.667 0.00 0.00 0.00 1.89
343 344 4.750598 TGGACGAATTTCACACGAACATAA 59.249 37.500 0.00 0.00 0.00 1.90
344 345 4.308265 TGGACGAATTTCACACGAACATA 58.692 39.130 0.00 0.00 0.00 2.29
345 346 3.135225 TGGACGAATTTCACACGAACAT 58.865 40.909 0.00 0.00 0.00 2.71
346 347 2.542178 CTGGACGAATTTCACACGAACA 59.458 45.455 0.00 0.00 0.00 3.18
347 348 2.661979 GCTGGACGAATTTCACACGAAC 60.662 50.000 0.00 0.00 0.00 3.95
348 349 1.529438 GCTGGACGAATTTCACACGAA 59.471 47.619 0.00 0.00 0.00 3.85
349 350 1.144969 GCTGGACGAATTTCACACGA 58.855 50.000 0.00 0.00 0.00 4.35
350 351 0.865111 TGCTGGACGAATTTCACACG 59.135 50.000 0.00 0.00 0.00 4.49
351 352 2.159517 GGATGCTGGACGAATTTCACAC 60.160 50.000 0.00 0.00 0.00 3.82
352 353 2.083774 GGATGCTGGACGAATTTCACA 58.916 47.619 0.00 0.00 0.00 3.58
353 354 2.352960 GAGGATGCTGGACGAATTTCAC 59.647 50.000 0.00 0.00 0.00 3.18
354 355 2.027285 TGAGGATGCTGGACGAATTTCA 60.027 45.455 0.00 0.00 0.00 2.69
355 356 2.352960 GTGAGGATGCTGGACGAATTTC 59.647 50.000 0.00 0.00 0.00 2.17
356 357 2.026822 AGTGAGGATGCTGGACGAATTT 60.027 45.455 0.00 0.00 0.00 1.82
357 358 1.556911 AGTGAGGATGCTGGACGAATT 59.443 47.619 0.00 0.00 0.00 2.17
358 359 1.198713 AGTGAGGATGCTGGACGAAT 58.801 50.000 0.00 0.00 0.00 3.34
359 360 0.976641 AAGTGAGGATGCTGGACGAA 59.023 50.000 0.00 0.00 0.00 3.85
360 361 1.847328 TAAGTGAGGATGCTGGACGA 58.153 50.000 0.00 0.00 0.00 4.20
361 362 2.898729 ATAAGTGAGGATGCTGGACG 57.101 50.000 0.00 0.00 0.00 4.79
362 363 4.999950 CCATAATAAGTGAGGATGCTGGAC 59.000 45.833 0.00 0.00 0.00 4.02
363 364 4.660303 ACCATAATAAGTGAGGATGCTGGA 59.340 41.667 0.00 0.00 0.00 3.86
364 365 4.758674 CACCATAATAAGTGAGGATGCTGG 59.241 45.833 0.00 0.00 36.01 4.85
365 366 5.371526 ACACCATAATAAGTGAGGATGCTG 58.628 41.667 0.00 0.00 37.43 4.41
366 367 5.636903 ACACCATAATAAGTGAGGATGCT 57.363 39.130 0.00 0.00 37.43 3.79
367 368 5.701290 GGTACACCATAATAAGTGAGGATGC 59.299 44.000 0.00 0.00 37.43 3.91
368 369 6.826668 TGGTACACCATAATAAGTGAGGATG 58.173 40.000 0.00 0.00 42.01 3.51
387 388 5.813080 AGTGCGGAGAAATAAAATGGTAC 57.187 39.130 0.00 0.00 0.00 3.34
388 389 8.402472 CAATTAGTGCGGAGAAATAAAATGGTA 58.598 33.333 0.00 0.00 0.00 3.25
389 390 7.122055 TCAATTAGTGCGGAGAAATAAAATGGT 59.878 33.333 0.00 0.00 0.00 3.55
390 391 7.479980 TCAATTAGTGCGGAGAAATAAAATGG 58.520 34.615 0.00 0.00 0.00 3.16
391 392 8.184192 ACTCAATTAGTGCGGAGAAATAAAATG 58.816 33.333 0.00 0.00 36.93 2.32
392 393 8.281212 ACTCAATTAGTGCGGAGAAATAAAAT 57.719 30.769 0.00 0.00 36.93 1.82
393 394 7.681939 ACTCAATTAGTGCGGAGAAATAAAA 57.318 32.000 0.00 0.00 36.93 1.52
394 395 7.279313 GGTACTCAATTAGTGCGGAGAAATAAA 59.721 37.037 0.00 0.00 41.40 1.40
395 396 6.759827 GGTACTCAATTAGTGCGGAGAAATAA 59.240 38.462 0.00 0.00 41.40 1.40
396 397 6.127281 TGGTACTCAATTAGTGCGGAGAAATA 60.127 38.462 0.00 0.00 41.40 1.40
397 398 5.116882 GGTACTCAATTAGTGCGGAGAAAT 58.883 41.667 0.00 0.00 41.40 2.17
398 399 4.020928 TGGTACTCAATTAGTGCGGAGAAA 60.021 41.667 0.00 0.00 41.40 2.52
399 400 3.512329 TGGTACTCAATTAGTGCGGAGAA 59.488 43.478 0.00 0.00 41.40 2.87
400 401 3.093814 TGGTACTCAATTAGTGCGGAGA 58.906 45.455 0.00 0.00 41.40 3.71
401 402 3.520290 TGGTACTCAATTAGTGCGGAG 57.480 47.619 0.00 0.00 41.40 4.63
402 403 4.188462 CAATGGTACTCAATTAGTGCGGA 58.812 43.478 0.00 0.00 41.40 5.54
403 404 3.938963 ACAATGGTACTCAATTAGTGCGG 59.061 43.478 0.00 0.00 41.40 5.69
404 405 4.629634 TCACAATGGTACTCAATTAGTGCG 59.370 41.667 0.00 0.00 41.40 5.34
405 406 6.494893 TTCACAATGGTACTCAATTAGTGC 57.505 37.500 0.00 0.00 39.39 4.40
429 430 9.696917 AATTCGAAGAAGTGCTCATAAATTTTT 57.303 25.926 3.35 0.00 45.90 1.94
430 431 9.696917 AAATTCGAAGAAGTGCTCATAAATTTT 57.303 25.926 3.35 0.00 45.90 1.82
432 433 9.994432 CTAAATTCGAAGAAGTGCTCATAAATT 57.006 29.630 3.35 0.00 45.90 1.82
433 434 9.167311 ACTAAATTCGAAGAAGTGCTCATAAAT 57.833 29.630 3.35 0.00 45.90 1.40
434 435 8.547967 ACTAAATTCGAAGAAGTGCTCATAAA 57.452 30.769 3.35 0.00 45.90 1.40
435 436 9.647797 TTACTAAATTCGAAGAAGTGCTCATAA 57.352 29.630 16.04 3.34 45.90 1.90
436 437 9.647797 TTTACTAAATTCGAAGAAGTGCTCATA 57.352 29.630 16.04 0.00 45.90 2.15
437 438 8.547967 TTTACTAAATTCGAAGAAGTGCTCAT 57.452 30.769 16.04 0.00 45.90 2.90
438 439 7.956420 TTTACTAAATTCGAAGAAGTGCTCA 57.044 32.000 16.04 0.00 45.90 4.26
439 440 9.104126 GTTTTTACTAAATTCGAAGAAGTGCTC 57.896 33.333 16.04 0.00 45.90 4.26
440 441 8.837389 AGTTTTTACTAAATTCGAAGAAGTGCT 58.163 29.630 16.04 6.99 45.90 4.40
446 447 8.715088 GCCAGTAGTTTTTACTAAATTCGAAGA 58.285 33.333 3.35 0.00 0.00 2.87
447 448 8.718734 AGCCAGTAGTTTTTACTAAATTCGAAG 58.281 33.333 3.35 0.00 0.00 3.79
448 449 8.611654 AGCCAGTAGTTTTTACTAAATTCGAA 57.388 30.769 0.00 0.00 0.00 3.71
449 450 9.709495 TTAGCCAGTAGTTTTTACTAAATTCGA 57.291 29.630 0.00 0.00 0.00 3.71
471 472 3.471495 AGTAACGCACAAGCATTTAGC 57.529 42.857 0.00 0.00 42.27 3.09
472 473 5.293324 TCCATAGTAACGCACAAGCATTTAG 59.707 40.000 0.00 0.00 42.27 1.85
473 474 5.179533 TCCATAGTAACGCACAAGCATTTA 58.820 37.500 0.00 0.00 42.27 1.40
474 475 4.006989 TCCATAGTAACGCACAAGCATTT 58.993 39.130 0.00 0.00 42.27 2.32
475 476 3.605634 TCCATAGTAACGCACAAGCATT 58.394 40.909 0.00 0.00 42.27 3.56
476 477 3.260475 TCCATAGTAACGCACAAGCAT 57.740 42.857 0.00 0.00 42.27 3.79
477 478 2.753055 TCCATAGTAACGCACAAGCA 57.247 45.000 0.00 0.00 42.27 3.91
478 479 3.000727 ACTTCCATAGTAACGCACAAGC 58.999 45.455 0.00 0.00 34.56 4.01
479 480 6.715344 TTAACTTCCATAGTAACGCACAAG 57.285 37.500 0.00 0.00 35.54 3.16
480 481 7.675962 AATTAACTTCCATAGTAACGCACAA 57.324 32.000 0.00 0.00 35.54 3.33
481 482 7.675962 AAATTAACTTCCATAGTAACGCACA 57.324 32.000 0.00 0.00 35.54 4.57
482 483 8.959734 AAAAATTAACTTCCATAGTAACGCAC 57.040 30.769 0.00 0.00 35.54 5.34
521 522 8.247562 TGGACCATGTAGCATAATTTAAACAAC 58.752 33.333 0.00 0.00 0.00 3.32
524 525 8.629158 TCATGGACCATGTAGCATAATTTAAAC 58.371 33.333 29.44 0.00 41.98 2.01
526 527 7.998383 ACTCATGGACCATGTAGCATAATTTAA 59.002 33.333 29.44 8.58 41.98 1.52
529 530 5.945310 ACTCATGGACCATGTAGCATAATT 58.055 37.500 29.44 9.50 41.98 1.40
530 531 5.573380 ACTCATGGACCATGTAGCATAAT 57.427 39.130 29.44 10.06 41.98 1.28
535 536 2.205074 CGAACTCATGGACCATGTAGC 58.795 52.381 29.44 17.72 41.98 3.58
536 537 2.205074 GCGAACTCATGGACCATGTAG 58.795 52.381 29.44 25.33 41.98 2.74
537 538 1.552792 TGCGAACTCATGGACCATGTA 59.447 47.619 29.44 17.29 41.98 2.29
538 539 0.324614 TGCGAACTCATGGACCATGT 59.675 50.000 29.44 14.25 41.98 3.21
539 540 0.729116 GTGCGAACTCATGGACCATG 59.271 55.000 26.10 26.10 42.60 3.66
540 541 0.324614 TGTGCGAACTCATGGACCAT 59.675 50.000 0.00 0.00 0.00 3.55
542 543 0.037326 TCTGTGCGAACTCATGGACC 60.037 55.000 0.00 0.00 0.00 4.46
543 544 1.795768 TTCTGTGCGAACTCATGGAC 58.204 50.000 0.00 0.00 0.00 4.02
544 545 2.768253 ATTCTGTGCGAACTCATGGA 57.232 45.000 0.00 0.00 33.72 3.41
545 546 3.837213 AAATTCTGTGCGAACTCATGG 57.163 42.857 0.00 0.00 33.72 3.66
546 547 6.636447 TGTTTTAAATTCTGTGCGAACTCATG 59.364 34.615 0.00 0.00 33.72 3.07
549 550 6.855914 TGATGTTTTAAATTCTGTGCGAACTC 59.144 34.615 0.00 0.00 33.72 3.01
551 552 6.984740 TGATGTTTTAAATTCTGTGCGAAC 57.015 33.333 0.00 0.00 33.72 3.95
552 553 7.592938 AGATGATGTTTTAAATTCTGTGCGAA 58.407 30.769 0.00 0.00 35.78 4.70
554 555 7.801547 AAGATGATGTTTTAAATTCTGTGCG 57.198 32.000 0.00 0.00 0.00 5.34
650 651 1.355720 ACTAGGGGCAAAACTGAGCAT 59.644 47.619 0.00 0.00 0.00 3.79
691 692 1.666011 GGAGACGGCAGAGTTCACA 59.334 57.895 0.00 0.00 0.00 3.58
878 939 2.029073 CTCGCCGTGGTCACTGTT 59.971 61.111 0.00 0.00 0.00 3.16
988 1066 0.820871 GAAGACATGGAGCTCGGAGT 59.179 55.000 7.83 5.42 0.00 3.85
1101 1179 1.344763 CTCGGTGTCTGAGAAACCCTT 59.655 52.381 16.02 0.00 36.63 3.95
1126 1204 4.174009 CACACATAGAACGGACGATTCTT 58.826 43.478 12.26 0.00 37.57 2.52
1143 1221 1.672030 CCCATTCTCGCTGCACACA 60.672 57.895 0.00 0.00 0.00 3.72
1521 1600 6.397272 TGCCTTTCCATACATTTTCAACATC 58.603 36.000 0.00 0.00 0.00 3.06
1636 1947 7.273598 GGTCACTTCTTCTCTTTTTGTTTCAAC 59.726 37.037 0.00 0.00 0.00 3.18
1766 2103 1.558756 CTCTGAATCTGGCCCAAGAGT 59.441 52.381 0.00 0.00 0.00 3.24
1778 2115 2.159170 ACTTGGCTCTACGCTCTGAATC 60.159 50.000 0.00 0.00 39.13 2.52
1822 2159 2.475339 ATGGGCCTAATTGGATGCAA 57.525 45.000 4.53 0.79 38.35 4.08
1920 2257 7.340743 TCCGGAATAATTCAATTAGCTTCCAAA 59.659 33.333 17.30 6.56 35.25 3.28
1921 2258 6.831353 TCCGGAATAATTCAATTAGCTTCCAA 59.169 34.615 17.30 6.81 35.25 3.53
2046 2525 3.326836 AAACCTCTAACAGAGCTGAGC 57.673 47.619 4.21 0.00 40.98 4.26
2057 2536 1.338389 GCACCTGGCGTAAACCTCTAA 60.338 52.381 0.00 0.00 0.00 2.10
2256 3967 6.023603 TGTATACCTTCCTTCCCTATCCATC 58.976 44.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.