Multiple sequence alignment - TraesCS2A01G584200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G584200 chr2A 100.000 2337 0 0 1 2337 775657910 775660246 0.000000e+00 4316.0
1 TraesCS2A01G584200 chr2A 91.324 219 17 2 2119 2337 674059487 674059703 4.880000e-77 298.0
2 TraesCS2A01G584200 chr2D 88.102 1059 52 22 775 1806 649061973 649060962 0.000000e+00 1190.0
3 TraesCS2A01G584200 chr2D 81.818 814 51 35 57 812 649062744 649061970 5.560000e-166 593.0
4 TraesCS2A01G584200 chr2D 89.529 191 15 4 1745 1932 649061073 649060885 1.080000e-58 237.0
5 TraesCS2A01G584200 chr2D 93.421 152 10 0 1937 2088 649060804 649060653 2.340000e-55 226.0
6 TraesCS2A01G584200 chr2D 100.000 37 0 0 32 68 649062802 649062766 4.170000e-08 69.4
7 TraesCS2A01G584200 chr2B 90.378 873 38 18 957 1800 784754364 784753509 0.000000e+00 1105.0
8 TraesCS2A01G584200 chr2B 85.632 348 27 8 1742 2089 784753613 784753289 6.180000e-91 344.0
9 TraesCS2A01G584200 chr2B 80.184 217 20 14 223 426 784755072 784754866 8.710000e-30 141.0
10 TraesCS2A01G584200 chrUn 81.853 777 100 28 889 1639 294783103 294782342 1.190000e-172 616.0
11 TraesCS2A01G584200 chr7A 80.385 780 103 31 889 1636 20096802 20097563 4.390000e-152 547.0
12 TraesCS2A01G584200 chr7A 82.951 305 41 8 1145 1439 20152318 20152621 4.950000e-67 265.0
13 TraesCS2A01G584200 chr7A 86.957 115 13 2 1219 1332 19319088 19318975 6.780000e-26 128.0
14 TraesCS2A01G584200 chr7A 85.882 85 11 1 1948 2031 20097867 20097951 3.200000e-14 89.8
15 TraesCS2A01G584200 chr7D 83.361 601 76 18 952 1539 19961783 19962372 3.420000e-148 534.0
16 TraesCS2A01G584200 chr7D 90.135 223 20 2 2115 2337 58498174 58497954 2.940000e-74 289.0
17 TraesCS2A01G584200 chr7D 87.826 115 12 2 1219 1332 18912620 18912507 1.460000e-27 134.0
18 TraesCS2A01G584200 chr5A 91.781 219 18 0 2119 2337 565379368 565379150 2.920000e-79 305.0
19 TraesCS2A01G584200 chr5A 90.411 219 21 0 2119 2337 632012437 632012655 2.940000e-74 289.0
20 TraesCS2A01G584200 chr5A 92.308 156 11 1 332 486 401438462 401438617 1.090000e-53 220.0
21 TraesCS2A01G584200 chr5A 91.837 98 7 1 73 170 401438106 401438202 4.050000e-28 135.0
22 TraesCS2A01G584200 chr4D 90.868 219 20 0 2119 2337 437030174 437030392 6.320000e-76 294.0
23 TraesCS2A01G584200 chr3B 90.411 219 21 0 2119 2337 824370136 824369918 2.940000e-74 289.0
24 TraesCS2A01G584200 chr3B 90.411 219 20 1 2119 2337 703994449 703994232 1.060000e-73 287.0
25 TraesCS2A01G584200 chr5B 90.411 219 19 2 2119 2337 320411183 320410967 1.060000e-73 287.0
26 TraesCS2A01G584200 chr5B 91.716 169 11 2 331 496 337907502 337907334 5.020000e-57 231.0
27 TraesCS2A01G584200 chr5B 88.421 95 10 1 76 170 337907854 337907761 1.900000e-21 113.0
28 TraesCS2A01G584200 chr5B 100.000 30 0 0 496 525 337906992 337906963 3.240000e-04 56.5
29 TraesCS2A01G584200 chr1B 90.411 219 20 1 2119 2337 317201053 317200836 1.060000e-73 287.0
30 TraesCS2A01G584200 chr5D 90.909 165 15 0 332 496 297580898 297580734 3.020000e-54 222.0
31 TraesCS2A01G584200 chr5D 91.579 95 7 1 76 170 297581250 297581157 1.880000e-26 130.0
32 TraesCS2A01G584200 chr4A 87.826 115 12 2 1219 1332 713352179 713352066 1.460000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G584200 chr2A 775657910 775660246 2336 False 4316.00 4316 100.0000 1 2337 1 chr2A.!!$F2 2336
1 TraesCS2A01G584200 chr2D 649060653 649062802 2149 True 463.08 1190 90.5740 32 2088 5 chr2D.!!$R1 2056
2 TraesCS2A01G584200 chr2B 784753289 784755072 1783 True 530.00 1105 85.3980 223 2089 3 chr2B.!!$R1 1866
3 TraesCS2A01G584200 chrUn 294782342 294783103 761 True 616.00 616 81.8530 889 1639 1 chrUn.!!$R1 750
4 TraesCS2A01G584200 chr7A 20096802 20097951 1149 False 318.40 547 83.1335 889 2031 2 chr7A.!!$F2 1142
5 TraesCS2A01G584200 chr7D 19961783 19962372 589 False 534.00 534 83.3610 952 1539 1 chr7D.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 720 0.035881 ACATGTCTGCTGTGTCAGGG 59.964 55.0 0.0 0.0 34.91 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2510 0.030235 GTGTTGTGTTCGCCCCTTTC 59.97 55.0 0.0 0.0 0.0 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.754946 ATAAAGGTCGCCGAAGTTCA 57.245 45.000 3.32 0.00 0.00 3.18
21 22 2.529780 TAAAGGTCGCCGAAGTTCAA 57.470 45.000 3.32 0.00 0.00 2.69
22 23 1.670791 AAAGGTCGCCGAAGTTCAAA 58.329 45.000 3.32 0.00 0.00 2.69
23 24 1.670791 AAGGTCGCCGAAGTTCAAAA 58.329 45.000 3.32 0.00 0.00 2.44
24 25 1.226746 AGGTCGCCGAAGTTCAAAAG 58.773 50.000 3.32 0.00 0.00 2.27
25 26 1.202604 AGGTCGCCGAAGTTCAAAAGA 60.203 47.619 3.32 0.00 0.00 2.52
26 27 1.600485 GGTCGCCGAAGTTCAAAAGAA 59.400 47.619 3.32 0.00 0.00 2.52
27 28 2.032426 GGTCGCCGAAGTTCAAAAGAAA 59.968 45.455 3.32 0.00 0.00 2.52
28 29 3.487879 GGTCGCCGAAGTTCAAAAGAAAA 60.488 43.478 3.32 0.00 0.00 2.29
29 30 4.099824 GTCGCCGAAGTTCAAAAGAAAAA 58.900 39.130 3.32 0.00 0.00 1.94
99 133 3.382832 CGTGGCCTCTCCGTCCTT 61.383 66.667 3.32 0.00 37.80 3.36
124 158 0.603065 CACGTCACAGAGACCCATCA 59.397 55.000 0.00 0.00 44.66 3.07
125 159 1.205655 CACGTCACAGAGACCCATCAT 59.794 52.381 0.00 0.00 44.66 2.45
134 168 1.524621 GACCCATCATCCACCGCTG 60.525 63.158 0.00 0.00 0.00 5.18
135 169 2.203252 CCCATCATCCACCGCTGG 60.203 66.667 0.00 0.00 39.23 4.85
146 180 0.742281 CACCGCTGGTTCCAGATCAG 60.742 60.000 21.32 9.05 36.24 2.90
159 193 4.148825 ATCAGACGGCTCCGCACC 62.149 66.667 8.41 0.00 44.19 5.01
189 223 0.107508 CACACGCATCCTCATCCCTT 60.108 55.000 0.00 0.00 0.00 3.95
197 231 0.327576 TCCTCATCCCTTTCCCTCCC 60.328 60.000 0.00 0.00 0.00 4.30
198 232 0.327964 CCTCATCCCTTTCCCTCCCT 60.328 60.000 0.00 0.00 0.00 4.20
199 233 1.135960 CTCATCCCTTTCCCTCCCTC 58.864 60.000 0.00 0.00 0.00 4.30
200 234 0.327576 TCATCCCTTTCCCTCCCTCC 60.328 60.000 0.00 0.00 0.00 4.30
201 235 0.624500 CATCCCTTTCCCTCCCTCCA 60.625 60.000 0.00 0.00 0.00 3.86
204 238 0.327964 CCCTTTCCCTCCCTCCAGAT 60.328 60.000 0.00 0.00 0.00 2.90
216 250 2.038659 CCTCCAGATCTCTCAGTTCCC 58.961 57.143 0.00 0.00 0.00 3.97
217 251 2.625352 CCTCCAGATCTCTCAGTTCCCA 60.625 54.545 0.00 0.00 0.00 4.37
218 252 2.430332 CTCCAGATCTCTCAGTTCCCAC 59.570 54.545 0.00 0.00 0.00 4.61
220 254 1.484240 CAGATCTCTCAGTTCCCACCC 59.516 57.143 0.00 0.00 0.00 4.61
222 256 1.208293 GATCTCTCAGTTCCCACCCAC 59.792 57.143 0.00 0.00 0.00 4.61
223 257 0.836400 TCTCTCAGTTCCCACCCACC 60.836 60.000 0.00 0.00 0.00 4.61
224 258 0.838122 CTCTCAGTTCCCACCCACCT 60.838 60.000 0.00 0.00 0.00 4.00
225 259 0.836400 TCTCAGTTCCCACCCACCTC 60.836 60.000 0.00 0.00 0.00 3.85
279 340 4.862823 CTCCGTCCTCCCCTCCCC 62.863 77.778 0.00 0.00 0.00 4.81
283 344 3.369388 GTCCTCCCCTCCCCTCCT 61.369 72.222 0.00 0.00 0.00 3.69
288 349 3.039526 CCCCTCCCCTCCTCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
324 394 2.040544 CACAGCCGGCCAGGTAAAG 61.041 63.158 26.15 3.86 43.70 1.85
331 401 3.210302 GCCAGGTAAAGCCATGCC 58.790 61.111 0.00 0.00 40.61 4.40
332 402 2.426406 GCCAGGTAAAGCCATGCCC 61.426 63.158 0.00 0.00 40.61 5.36
333 403 2.120909 CCAGGTAAAGCCATGCCCG 61.121 63.158 0.00 0.00 40.61 6.13
334 404 2.120909 CAGGTAAAGCCATGCCCGG 61.121 63.158 0.00 0.00 40.61 5.73
335 405 2.274104 GGTAAAGCCATGCCCGGA 59.726 61.111 0.73 0.00 37.17 5.14
336 406 1.152756 GGTAAAGCCATGCCCGGAT 60.153 57.895 0.73 0.00 37.17 4.18
338 408 0.179018 GTAAAGCCATGCCCGGATCT 60.179 55.000 0.73 0.00 0.00 2.75
341 411 3.928779 GCCATGCCCGGATCTCGA 61.929 66.667 0.73 0.00 42.43 4.04
342 412 2.341543 CCATGCCCGGATCTCGAG 59.658 66.667 5.93 5.93 42.43 4.04
343 413 2.502492 CCATGCCCGGATCTCGAGT 61.502 63.158 13.13 0.00 42.43 4.18
378 456 2.125269 CTTTCCCCCGATTCGCGT 60.125 61.111 5.77 0.00 38.67 6.01
379 457 2.435234 TTTCCCCCGATTCGCGTG 60.435 61.111 5.77 0.00 38.67 5.34
435 513 2.158959 CGCCTGATCCGTGTCGAAC 61.159 63.158 0.00 0.00 0.00 3.95
466 544 0.798159 ATGCGCTGTGTGTGTGTATG 59.202 50.000 9.73 0.00 0.00 2.39
490 568 0.443869 ATCGTGCTTGTTCATGCGTC 59.556 50.000 6.28 2.48 0.00 5.19
491 569 0.599991 TCGTGCTTGTTCATGCGTCT 60.600 50.000 6.28 0.00 0.00 4.18
493 571 0.110056 GTGCTTGTTCATGCGTCTGG 60.110 55.000 6.28 0.00 0.00 3.86
494 572 0.534877 TGCTTGTTCATGCGTCTGGT 60.535 50.000 6.28 0.00 0.00 4.00
502 669 1.138859 TCATGCGTCTGGTTGGATAGG 59.861 52.381 0.00 0.00 0.00 2.57
547 717 2.231235 ACGATACATGTCTGCTGTGTCA 59.769 45.455 0.00 0.00 35.26 3.58
548 718 2.856557 CGATACATGTCTGCTGTGTCAG 59.143 50.000 0.00 0.00 35.26 3.51
549 719 2.749280 TACATGTCTGCTGTGTCAGG 57.251 50.000 0.00 0.00 34.91 3.86
550 720 0.035881 ACATGTCTGCTGTGTCAGGG 59.964 55.000 0.00 0.00 34.91 4.45
551 721 0.322648 CATGTCTGCTGTGTCAGGGA 59.677 55.000 0.00 0.00 34.91 4.20
552 722 0.322975 ATGTCTGCTGTGTCAGGGAC 59.677 55.000 0.00 0.00 34.91 4.46
553 723 0.760567 TGTCTGCTGTGTCAGGGACT 60.761 55.000 0.00 0.00 43.88 3.85
554 724 0.037790 GTCTGCTGTGTCAGGGACTC 60.038 60.000 0.00 0.00 34.60 3.36
555 725 0.469892 TCTGCTGTGTCAGGGACTCA 60.470 55.000 0.00 0.00 34.60 3.41
577 747 1.832998 GGGATGCATGTTGAAATGGGT 59.167 47.619 2.46 0.00 0.00 4.51
587 766 7.039434 TGCATGTTGAAATGGGTACAAAATCTA 60.039 33.333 0.00 0.00 0.00 1.98
600 779 2.038387 AAATCTAGCCGGCGAACAAT 57.962 45.000 23.20 8.90 0.00 2.71
601 780 2.038387 AATCTAGCCGGCGAACAATT 57.962 45.000 23.20 14.50 0.00 2.32
657 844 4.563976 GCACCAGATATGCATGTTGAAAAC 59.436 41.667 10.16 0.00 44.51 2.43
717 912 0.249120 CCGGTACTTCATCTGCACCA 59.751 55.000 0.00 0.00 0.00 4.17
749 944 4.488790 CACTAGATGCATGCCCCC 57.511 61.111 16.68 4.00 0.00 5.40
802 1001 4.452114 TCGTGTTCAACTGGATTGATTCTG 59.548 41.667 0.00 0.00 46.80 3.02
812 1011 6.725364 ACTGGATTGATTCTGTTCTACCATT 58.275 36.000 0.00 0.00 0.00 3.16
813 1012 6.600822 ACTGGATTGATTCTGTTCTACCATTG 59.399 38.462 0.00 0.00 0.00 2.82
815 1014 6.599244 TGGATTGATTCTGTTCTACCATTGTC 59.401 38.462 0.00 0.00 0.00 3.18
817 1016 7.011857 GGATTGATTCTGTTCTACCATTGTCTC 59.988 40.741 0.00 0.00 0.00 3.36
818 1017 6.358974 TGATTCTGTTCTACCATTGTCTCA 57.641 37.500 0.00 0.00 0.00 3.27
821 1020 4.998788 TCTGTTCTACCATTGTCTCATCG 58.001 43.478 0.00 0.00 0.00 3.84
822 1021 3.521560 TGTTCTACCATTGTCTCATCGC 58.478 45.455 0.00 0.00 0.00 4.58
823 1022 2.492019 TCTACCATTGTCTCATCGCG 57.508 50.000 0.00 0.00 0.00 5.87
824 1023 1.067060 TCTACCATTGTCTCATCGCGG 59.933 52.381 6.13 0.00 0.00 6.46
842 1074 2.332104 CGGGATGTCTATGCGAATCAG 58.668 52.381 0.00 0.00 0.00 2.90
882 1114 4.621087 GGCCAGTGGGGGTGCTTT 62.621 66.667 12.15 0.00 37.04 3.51
883 1115 2.524148 GCCAGTGGGGGTGCTTTT 60.524 61.111 12.15 0.00 37.04 2.27
884 1116 2.140138 GCCAGTGGGGGTGCTTTTT 61.140 57.895 12.15 0.00 37.04 1.94
945 1177 7.197071 ACGCATGTGAATAGTTTCTTTACAA 57.803 32.000 14.43 0.00 32.78 2.41
947 1180 7.075121 CGCATGTGAATAGTTTCTTTACAACA 58.925 34.615 0.00 0.00 32.78 3.33
1045 1282 1.304052 TTGGTTGGATCCCTTGGCG 60.304 57.895 9.90 0.00 0.00 5.69
1224 1468 2.805353 CAAGACCGCGACCGACAG 60.805 66.667 8.23 0.00 36.29 3.51
1445 1700 5.475564 TGAAAGTTGGGGTATACTCTTTTGC 59.524 40.000 2.03 0.00 0.00 3.68
1502 1758 2.867333 CTTTACCGCTCGCTCGCTCA 62.867 60.000 0.00 0.00 0.00 4.26
1503 1759 2.279502 TTTACCGCTCGCTCGCTCAT 62.280 55.000 0.00 0.00 0.00 2.90
1534 1790 3.878160 ACTCTCTTCCTCGGTGAAATC 57.122 47.619 0.00 0.00 0.00 2.17
1539 1795 3.173965 TCTTCCTCGGTGAAATCTTCCT 58.826 45.455 0.00 0.00 0.00 3.36
1542 1798 2.497675 TCCTCGGTGAAATCTTCCTCAG 59.502 50.000 0.00 0.00 0.00 3.35
1543 1799 2.234908 CCTCGGTGAAATCTTCCTCAGT 59.765 50.000 0.00 0.00 0.00 3.41
1544 1800 3.307059 CCTCGGTGAAATCTTCCTCAGTT 60.307 47.826 0.00 0.00 0.00 3.16
1545 1801 4.319177 CTCGGTGAAATCTTCCTCAGTTT 58.681 43.478 0.00 0.00 0.00 2.66
1547 1803 4.065088 CGGTGAAATCTTCCTCAGTTTCA 58.935 43.478 0.00 0.00 38.01 2.69
1571 1869 2.503331 TCCGCATTGTCTTTCATGTGT 58.497 42.857 0.00 0.00 0.00 3.72
1589 1887 5.499139 TGTGTTGTGTTTCTTTCTGATCC 57.501 39.130 0.00 0.00 0.00 3.36
1599 1897 2.702478 TCTTTCTGATCCGATGCTCCAT 59.298 45.455 0.00 0.00 0.00 3.41
1603 1901 1.871676 CTGATCCGATGCTCCATGTTG 59.128 52.381 0.00 0.00 0.00 3.33
1666 1964 2.510411 TGGACTGGTGGTGCACTG 59.490 61.111 17.98 4.95 41.27 3.66
1739 2066 2.175878 AGAATTCGTCAGCTGCTGTT 57.824 45.000 27.24 14.99 32.61 3.16
1740 2067 2.072298 AGAATTCGTCAGCTGCTGTTC 58.928 47.619 27.24 21.70 32.61 3.18
1741 2068 2.072298 GAATTCGTCAGCTGCTGTTCT 58.928 47.619 27.24 8.93 32.61 3.01
1742 2069 1.436600 ATTCGTCAGCTGCTGTTCTG 58.563 50.000 27.24 15.84 32.61 3.02
1743 2070 1.224069 TTCGTCAGCTGCTGTTCTGC 61.224 55.000 27.24 13.23 39.61 4.26
1749 2076 4.060372 CTGCTGTTCTGCTGCTGT 57.940 55.556 0.00 0.00 41.79 4.40
1750 2077 2.328235 CTGCTGTTCTGCTGCTGTT 58.672 52.632 0.00 0.00 41.79 3.16
1751 2078 1.516161 CTGCTGTTCTGCTGCTGTTA 58.484 50.000 0.00 0.00 41.79 2.41
1752 2079 2.082231 CTGCTGTTCTGCTGCTGTTAT 58.918 47.619 0.00 0.00 41.79 1.89
1753 2080 2.486982 CTGCTGTTCTGCTGCTGTTATT 59.513 45.455 0.00 0.00 41.79 1.40
1754 2081 2.886523 TGCTGTTCTGCTGCTGTTATTT 59.113 40.909 0.00 0.00 41.79 1.40
1755 2082 3.240069 GCTGTTCTGCTGCTGTTATTTG 58.760 45.455 0.00 0.00 38.75 2.32
1756 2083 3.240069 CTGTTCTGCTGCTGTTATTTGC 58.760 45.455 0.00 0.00 0.00 3.68
1757 2084 2.622470 TGTTCTGCTGCTGTTATTTGCA 59.378 40.909 0.00 0.00 37.63 4.08
1758 2085 3.067883 TGTTCTGCTGCTGTTATTTGCAA 59.932 39.130 0.00 0.00 38.81 4.08
1759 2086 4.240096 GTTCTGCTGCTGTTATTTGCAAT 58.760 39.130 0.00 0.00 38.81 3.56
1760 2087 3.840468 TCTGCTGCTGTTATTTGCAATG 58.160 40.909 0.00 0.00 38.81 2.82
1761 2088 3.256383 TCTGCTGCTGTTATTTGCAATGT 59.744 39.130 0.00 0.00 38.81 2.71
1762 2089 3.991773 CTGCTGCTGTTATTTGCAATGTT 59.008 39.130 0.00 0.00 38.81 2.71
1763 2090 5.048154 TCTGCTGCTGTTATTTGCAATGTTA 60.048 36.000 0.00 0.00 38.81 2.41
1764 2091 5.536260 TGCTGCTGTTATTTGCAATGTTAA 58.464 33.333 0.00 0.00 38.81 2.01
1765 2092 5.987953 TGCTGCTGTTATTTGCAATGTTAAA 59.012 32.000 0.00 0.00 38.81 1.52
1766 2093 6.481313 TGCTGCTGTTATTTGCAATGTTAAAA 59.519 30.769 0.00 0.00 38.81 1.52
1767 2094 6.791775 GCTGCTGTTATTTGCAATGTTAAAAC 59.208 34.615 0.00 0.00 38.81 2.43
1768 2095 7.307337 GCTGCTGTTATTTGCAATGTTAAAACT 60.307 33.333 0.00 0.00 38.81 2.66
1769 2096 9.190858 CTGCTGTTATTTGCAATGTTAAAACTA 57.809 29.630 0.00 0.00 38.81 2.24
1770 2097 9.703892 TGCTGTTATTTGCAATGTTAAAACTAT 57.296 25.926 0.00 0.00 36.15 2.12
1791 2118 9.525409 AACTATTATTGAAAAGCATTCATCTGC 57.475 29.630 5.88 0.00 42.62 4.26
1797 2124 4.711980 GCATTCATCTGCTGCTGC 57.288 55.556 8.89 8.89 39.12 5.25
1943 2355 2.158682 TGAAGCCCAACTCTAGCAACAA 60.159 45.455 0.00 0.00 0.00 2.83
1951 2363 5.163561 CCCAACTCTAGCAACAAAACTTTGA 60.164 40.000 9.12 0.00 40.55 2.69
2031 2448 2.176369 CGCTGAAATGGTTTACATGCG 58.824 47.619 0.00 0.00 40.34 4.73
2040 2457 3.321497 TGGTTTACATGCGGATTTTTGC 58.679 40.909 0.00 0.00 0.00 3.68
2059 2476 6.371595 TTTGCAAAATTGGGAGATGGTAAT 57.628 33.333 10.02 0.00 0.00 1.89
2089 2506 8.211116 ACATCAGATTTCAAAATTTGTTTGCA 57.789 26.923 5.56 0.00 33.59 4.08
2090 2507 8.124199 ACATCAGATTTCAAAATTTGTTTGCAC 58.876 29.630 5.56 0.00 33.59 4.57
2091 2508 7.606858 TCAGATTTCAAAATTTGTTTGCACA 57.393 28.000 5.56 0.00 33.59 4.57
2092 2509 8.211116 TCAGATTTCAAAATTTGTTTGCACAT 57.789 26.923 5.56 0.00 33.59 3.21
2093 2510 8.123575 TCAGATTTCAAAATTTGTTTGCACATG 58.876 29.630 5.56 0.00 33.59 3.21
2094 2511 8.123575 CAGATTTCAAAATTTGTTTGCACATGA 58.876 29.630 0.00 0.00 31.06 3.07
2095 2512 8.675504 AGATTTCAAAATTTGTTTGCACATGAA 58.324 25.926 0.00 0.00 31.06 2.57
2096 2513 9.286946 GATTTCAAAATTTGTTTGCACATGAAA 57.713 25.926 0.00 9.90 39.49 2.69
2097 2514 8.670804 TTTCAAAATTTGTTTGCACATGAAAG 57.329 26.923 0.00 0.00 34.31 2.62
2098 2515 6.783162 TCAAAATTTGTTTGCACATGAAAGG 58.217 32.000 0.00 0.00 31.06 3.11
2099 2516 5.754543 AAATTTGTTTGCACATGAAAGGG 57.245 34.783 0.00 0.00 31.06 3.95
2100 2517 2.906691 TTGTTTGCACATGAAAGGGG 57.093 45.000 0.00 0.00 31.06 4.79
2101 2518 0.392336 TGTTTGCACATGAAAGGGGC 59.608 50.000 0.00 0.00 0.00 5.80
2102 2519 0.667184 GTTTGCACATGAAAGGGGCG 60.667 55.000 0.00 0.00 0.00 6.13
2103 2520 0.825425 TTTGCACATGAAAGGGGCGA 60.825 50.000 0.00 0.00 0.00 5.54
2104 2521 0.825425 TTGCACATGAAAGGGGCGAA 60.825 50.000 0.00 0.00 0.00 4.70
2105 2522 1.212751 GCACATGAAAGGGGCGAAC 59.787 57.895 0.00 0.00 0.00 3.95
2106 2523 1.523154 GCACATGAAAGGGGCGAACA 61.523 55.000 0.00 0.00 0.00 3.18
2107 2524 0.240945 CACATGAAAGGGGCGAACAC 59.759 55.000 0.00 0.00 0.00 3.32
2108 2525 0.179004 ACATGAAAGGGGCGAACACA 60.179 50.000 0.00 0.00 0.00 3.72
2109 2526 0.958091 CATGAAAGGGGCGAACACAA 59.042 50.000 0.00 0.00 0.00 3.33
2110 2527 0.958822 ATGAAAGGGGCGAACACAAC 59.041 50.000 0.00 0.00 0.00 3.32
2111 2528 0.394488 TGAAAGGGGCGAACACAACA 60.394 50.000 0.00 0.00 0.00 3.33
2112 2529 0.030235 GAAAGGGGCGAACACAACAC 59.970 55.000 0.00 0.00 0.00 3.32
2113 2530 0.681564 AAAGGGGCGAACACAACACA 60.682 50.000 0.00 0.00 0.00 3.72
2114 2531 0.467290 AAGGGGCGAACACAACACAT 60.467 50.000 0.00 0.00 0.00 3.21
2115 2532 1.172180 AGGGGCGAACACAACACATG 61.172 55.000 0.00 0.00 0.00 3.21
2116 2533 1.169661 GGGGCGAACACAACACATGA 61.170 55.000 0.00 0.00 0.00 3.07
2117 2534 0.881118 GGGCGAACACAACACATGAT 59.119 50.000 0.00 0.00 0.00 2.45
2118 2535 1.401409 GGGCGAACACAACACATGATG 60.401 52.381 0.00 0.00 0.00 3.07
2119 2536 1.401409 GGCGAACACAACACATGATGG 60.401 52.381 0.00 0.00 0.00 3.51
2120 2537 1.401409 GCGAACACAACACATGATGGG 60.401 52.381 0.00 0.00 0.00 4.00
2121 2538 1.401409 CGAACACAACACATGATGGGC 60.401 52.381 0.00 0.00 0.00 5.36
2122 2539 1.612950 GAACACAACACATGATGGGCA 59.387 47.619 0.00 0.00 0.00 5.36
2123 2540 1.927487 ACACAACACATGATGGGCAT 58.073 45.000 0.00 0.00 37.85 4.40
2135 2552 2.624364 TGATGGGCATGTACAATGATGC 59.376 45.455 10.12 10.12 43.60 3.91
2136 2553 2.440517 TGGGCATGTACAATGATGCT 57.559 45.000 16.47 0.00 43.77 3.79
2137 2554 3.574354 TGGGCATGTACAATGATGCTA 57.426 42.857 16.47 6.03 43.77 3.49
2138 2555 4.103013 TGGGCATGTACAATGATGCTAT 57.897 40.909 16.47 0.00 43.77 2.97
2139 2556 4.074259 TGGGCATGTACAATGATGCTATC 58.926 43.478 16.47 8.95 43.77 2.08
2140 2557 4.202493 TGGGCATGTACAATGATGCTATCT 60.202 41.667 16.47 0.00 43.77 1.98
2141 2558 4.763793 GGGCATGTACAATGATGCTATCTT 59.236 41.667 16.47 0.00 43.77 2.40
2142 2559 5.939883 GGGCATGTACAATGATGCTATCTTA 59.060 40.000 16.47 0.00 43.77 2.10
2143 2560 6.093219 GGGCATGTACAATGATGCTATCTTAG 59.907 42.308 16.47 0.00 43.77 2.18
2144 2561 6.093219 GGCATGTACAATGATGCTATCTTAGG 59.907 42.308 16.47 0.00 43.77 2.69
2145 2562 6.875726 GCATGTACAATGATGCTATCTTAGGA 59.124 38.462 11.12 0.00 41.52 2.94
2146 2563 7.064371 GCATGTACAATGATGCTATCTTAGGAG 59.936 40.741 11.12 0.00 41.52 3.69
2147 2564 7.603180 TGTACAATGATGCTATCTTAGGAGT 57.397 36.000 0.00 0.00 0.00 3.85
2148 2565 7.436933 TGTACAATGATGCTATCTTAGGAGTG 58.563 38.462 0.00 0.00 0.00 3.51
2149 2566 5.303971 ACAATGATGCTATCTTAGGAGTGC 58.696 41.667 0.00 0.00 0.00 4.40
2150 2567 5.071519 ACAATGATGCTATCTTAGGAGTGCT 59.928 40.000 0.00 0.00 0.00 4.40
2151 2568 6.268617 ACAATGATGCTATCTTAGGAGTGCTA 59.731 38.462 0.00 0.00 0.00 3.49
2152 2569 7.038445 ACAATGATGCTATCTTAGGAGTGCTAT 60.038 37.037 0.00 0.00 0.00 2.97
2153 2570 6.278172 TGATGCTATCTTAGGAGTGCTATG 57.722 41.667 0.00 0.00 0.00 2.23
2154 2571 5.777223 TGATGCTATCTTAGGAGTGCTATGT 59.223 40.000 4.78 0.00 0.00 2.29
2155 2572 6.948309 TGATGCTATCTTAGGAGTGCTATGTA 59.052 38.462 4.78 0.00 0.00 2.29
2156 2573 6.825944 TGCTATCTTAGGAGTGCTATGTAG 57.174 41.667 4.78 6.97 0.00 2.74
2157 2574 6.543735 TGCTATCTTAGGAGTGCTATGTAGA 58.456 40.000 13.15 6.32 0.00 2.59
2158 2575 7.004691 TGCTATCTTAGGAGTGCTATGTAGAA 58.995 38.462 13.15 5.38 0.00 2.10
2159 2576 7.671819 TGCTATCTTAGGAGTGCTATGTAGAAT 59.328 37.037 13.15 2.36 0.00 2.40
2160 2577 9.179909 GCTATCTTAGGAGTGCTATGTAGAATA 57.820 37.037 13.15 3.09 0.00 1.75
2168 2585 8.874156 AGGAGTGCTATGTAGAATAAATGATGA 58.126 33.333 0.00 0.00 0.00 2.92
2169 2586 9.149225 GGAGTGCTATGTAGAATAAATGATGAG 57.851 37.037 0.00 0.00 0.00 2.90
2170 2587 9.149225 GAGTGCTATGTAGAATAAATGATGAGG 57.851 37.037 0.00 0.00 0.00 3.86
2171 2588 8.654997 AGTGCTATGTAGAATAAATGATGAGGT 58.345 33.333 0.00 0.00 0.00 3.85
2172 2589 8.715998 GTGCTATGTAGAATAAATGATGAGGTG 58.284 37.037 0.00 0.00 0.00 4.00
2173 2590 7.879677 TGCTATGTAGAATAAATGATGAGGTGG 59.120 37.037 0.00 0.00 0.00 4.61
2174 2591 8.097038 GCTATGTAGAATAAATGATGAGGTGGA 58.903 37.037 0.00 0.00 0.00 4.02
2175 2592 9.650539 CTATGTAGAATAAATGATGAGGTGGAG 57.349 37.037 0.00 0.00 0.00 3.86
2176 2593 7.675161 TGTAGAATAAATGATGAGGTGGAGA 57.325 36.000 0.00 0.00 0.00 3.71
2177 2594 8.089625 TGTAGAATAAATGATGAGGTGGAGAA 57.910 34.615 0.00 0.00 0.00 2.87
2178 2595 8.206867 TGTAGAATAAATGATGAGGTGGAGAAG 58.793 37.037 0.00 0.00 0.00 2.85
2179 2596 7.443302 AGAATAAATGATGAGGTGGAGAAGA 57.557 36.000 0.00 0.00 0.00 2.87
2180 2597 7.507829 AGAATAAATGATGAGGTGGAGAAGAG 58.492 38.462 0.00 0.00 0.00 2.85
2181 2598 7.346698 AGAATAAATGATGAGGTGGAGAAGAGA 59.653 37.037 0.00 0.00 0.00 3.10
2182 2599 5.356291 AAATGATGAGGTGGAGAAGAGAG 57.644 43.478 0.00 0.00 0.00 3.20
2183 2600 3.746792 TGATGAGGTGGAGAAGAGAGA 57.253 47.619 0.00 0.00 0.00 3.10
2184 2601 4.053009 TGATGAGGTGGAGAAGAGAGAA 57.947 45.455 0.00 0.00 0.00 2.87
2185 2602 3.766591 TGATGAGGTGGAGAAGAGAGAAC 59.233 47.826 0.00 0.00 0.00 3.01
2186 2603 3.534357 TGAGGTGGAGAAGAGAGAACT 57.466 47.619 0.00 0.00 0.00 3.01
2187 2604 3.426615 TGAGGTGGAGAAGAGAGAACTC 58.573 50.000 0.00 0.00 42.90 3.01
2188 2605 3.181428 TGAGGTGGAGAAGAGAGAACTCA 60.181 47.826 4.64 0.00 44.79 3.41
2189 2606 4.023291 GAGGTGGAGAAGAGAGAACTCAT 58.977 47.826 4.64 0.00 44.79 2.90
2190 2607 5.197451 GAGGTGGAGAAGAGAGAACTCATA 58.803 45.833 4.64 0.00 44.79 2.15
2191 2608 5.584913 AGGTGGAGAAGAGAGAACTCATAA 58.415 41.667 4.64 0.00 44.79 1.90
2192 2609 5.656416 AGGTGGAGAAGAGAGAACTCATAAG 59.344 44.000 4.64 0.00 44.79 1.73
2193 2610 5.654650 GGTGGAGAAGAGAGAACTCATAAGA 59.345 44.000 4.64 0.00 44.79 2.10
2194 2611 6.153680 GGTGGAGAAGAGAGAACTCATAAGAA 59.846 42.308 4.64 0.00 44.79 2.52
2195 2612 7.310113 GGTGGAGAAGAGAGAACTCATAAGAAA 60.310 40.741 4.64 0.00 44.79 2.52
2196 2613 8.091449 GTGGAGAAGAGAGAACTCATAAGAAAA 58.909 37.037 4.64 0.00 44.79 2.29
2197 2614 8.310382 TGGAGAAGAGAGAACTCATAAGAAAAG 58.690 37.037 4.64 0.00 44.79 2.27
2198 2615 8.527810 GGAGAAGAGAGAACTCATAAGAAAAGA 58.472 37.037 4.64 0.00 44.79 2.52
2199 2616 9.353999 GAGAAGAGAGAACTCATAAGAAAAGAC 57.646 37.037 4.64 0.00 44.79 3.01
2200 2617 9.088987 AGAAGAGAGAACTCATAAGAAAAGACT 57.911 33.333 4.64 0.00 44.79 3.24
2201 2618 9.705290 GAAGAGAGAACTCATAAGAAAAGACTT 57.295 33.333 4.64 0.00 44.79 3.01
2202 2619 9.487790 AAGAGAGAACTCATAAGAAAAGACTTG 57.512 33.333 4.64 0.00 44.79 3.16
2203 2620 8.646900 AGAGAGAACTCATAAGAAAAGACTTGT 58.353 33.333 4.64 0.00 44.79 3.16
2204 2621 8.825667 AGAGAACTCATAAGAAAAGACTTGTC 57.174 34.615 0.00 0.00 0.00 3.18
2205 2622 8.646900 AGAGAACTCATAAGAAAAGACTTGTCT 58.353 33.333 1.69 1.69 0.00 3.41
2206 2623 9.267084 GAGAACTCATAAGAAAAGACTTGTCTT 57.733 33.333 21.59 21.59 35.77 3.01
2207 2624 9.267084 AGAACTCATAAGAAAAGACTTGTCTTC 57.733 33.333 21.53 8.09 33.70 2.87
2208 2625 9.267084 GAACTCATAAGAAAAGACTTGTCTTCT 57.733 33.333 21.53 11.28 33.70 2.85
2209 2626 8.825667 ACTCATAAGAAAAGACTTGTCTTCTC 57.174 34.615 21.53 11.71 33.70 2.87
2210 2627 8.646900 ACTCATAAGAAAAGACTTGTCTTCTCT 58.353 33.333 21.53 13.63 33.70 3.10
2211 2628 9.487790 CTCATAAGAAAAGACTTGTCTTCTCTT 57.512 33.333 25.61 25.61 39.50 2.85
2260 2677 6.897259 TTTTAGTACAATATGTCTCACCGC 57.103 37.500 0.00 0.00 0.00 5.68
2261 2678 5.585820 TTAGTACAATATGTCTCACCGCA 57.414 39.130 0.00 0.00 0.00 5.69
2262 2679 4.672587 AGTACAATATGTCTCACCGCAT 57.327 40.909 0.00 0.00 0.00 4.73
2263 2680 5.023533 AGTACAATATGTCTCACCGCATT 57.976 39.130 0.00 0.00 0.00 3.56
2264 2681 5.428253 AGTACAATATGTCTCACCGCATTT 58.572 37.500 0.00 0.00 0.00 2.32
2265 2682 5.880332 AGTACAATATGTCTCACCGCATTTT 59.120 36.000 0.00 0.00 0.00 1.82
2266 2683 5.643379 ACAATATGTCTCACCGCATTTTT 57.357 34.783 0.00 0.00 0.00 1.94
2267 2684 6.751514 ACAATATGTCTCACCGCATTTTTA 57.248 33.333 0.00 0.00 0.00 1.52
2268 2685 6.785191 ACAATATGTCTCACCGCATTTTTAG 58.215 36.000 0.00 0.00 0.00 1.85
2269 2686 6.183360 ACAATATGTCTCACCGCATTTTTAGG 60.183 38.462 0.00 0.00 0.00 2.69
2270 2687 3.410631 TGTCTCACCGCATTTTTAGGA 57.589 42.857 0.00 0.00 0.00 2.94
2271 2688 3.745799 TGTCTCACCGCATTTTTAGGAA 58.254 40.909 0.00 0.00 0.00 3.36
2272 2689 4.331968 TGTCTCACCGCATTTTTAGGAAT 58.668 39.130 0.00 0.00 0.00 3.01
2273 2690 5.492895 TGTCTCACCGCATTTTTAGGAATA 58.507 37.500 0.00 0.00 0.00 1.75
2274 2691 5.584649 TGTCTCACCGCATTTTTAGGAATAG 59.415 40.000 0.00 0.00 0.00 1.73
2275 2692 4.574828 TCTCACCGCATTTTTAGGAATAGC 59.425 41.667 0.00 0.00 0.00 2.97
2276 2693 4.523083 TCACCGCATTTTTAGGAATAGCT 58.477 39.130 0.00 0.00 0.00 3.32
2277 2694 5.676552 TCACCGCATTTTTAGGAATAGCTA 58.323 37.500 0.00 0.00 0.00 3.32
2278 2695 5.758296 TCACCGCATTTTTAGGAATAGCTAG 59.242 40.000 0.00 0.00 0.00 3.42
2279 2696 5.527582 CACCGCATTTTTAGGAATAGCTAGT 59.472 40.000 0.00 0.00 0.00 2.57
2280 2697 6.038271 CACCGCATTTTTAGGAATAGCTAGTT 59.962 38.462 0.00 0.00 0.00 2.24
2281 2698 6.038271 ACCGCATTTTTAGGAATAGCTAGTTG 59.962 38.462 0.00 0.00 0.00 3.16
2282 2699 6.038271 CCGCATTTTTAGGAATAGCTAGTTGT 59.962 38.462 0.00 0.00 0.00 3.32
2283 2700 7.415206 CCGCATTTTTAGGAATAGCTAGTTGTT 60.415 37.037 0.00 0.00 0.00 2.83
2284 2701 7.968405 CGCATTTTTAGGAATAGCTAGTTGTTT 59.032 33.333 0.00 0.00 0.00 2.83
2294 2711 9.731819 GGAATAGCTAGTTGTTTAAAATAAGGC 57.268 33.333 0.00 0.00 0.00 4.35
2299 2716 9.734984 AGCTAGTTGTTTAAAATAAGGCTAAGA 57.265 29.630 0.00 0.00 0.00 2.10
2300 2717 9.989869 GCTAGTTGTTTAAAATAAGGCTAAGAG 57.010 33.333 0.00 0.00 0.00 2.85
2306 2723 9.174166 TGTTTAAAATAAGGCTAAGAGATGACC 57.826 33.333 0.00 0.00 0.00 4.02
2307 2724 9.397280 GTTTAAAATAAGGCTAAGAGATGACCT 57.603 33.333 0.00 0.00 0.00 3.85
2311 2728 9.566432 AAAATAAGGCTAAGAGATGACCTATTG 57.434 33.333 0.00 0.00 0.00 1.90
2312 2729 7.863901 ATAAGGCTAAGAGATGACCTATTGT 57.136 36.000 0.00 0.00 0.00 2.71
2313 2730 8.958060 ATAAGGCTAAGAGATGACCTATTGTA 57.042 34.615 0.00 0.00 0.00 2.41
2314 2731 6.909550 AGGCTAAGAGATGACCTATTGTAG 57.090 41.667 0.00 0.00 0.00 2.74
2315 2732 6.615617 AGGCTAAGAGATGACCTATTGTAGA 58.384 40.000 0.00 0.00 0.00 2.59
2316 2733 6.492087 AGGCTAAGAGATGACCTATTGTAGAC 59.508 42.308 0.00 0.00 0.00 2.59
2317 2734 6.265649 GGCTAAGAGATGACCTATTGTAGACA 59.734 42.308 0.00 0.00 0.00 3.41
2318 2735 7.039363 GGCTAAGAGATGACCTATTGTAGACAT 60.039 40.741 0.00 0.00 0.00 3.06
2319 2736 8.364142 GCTAAGAGATGACCTATTGTAGACATT 58.636 37.037 0.00 0.00 0.00 2.71
2322 2739 9.965902 AAGAGATGACCTATTGTAGACATTTTT 57.034 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.048337 TGAACTTCGGCGACCTTTATT 57.952 42.857 10.16 0.00 0.00 1.40
1 2 2.754946 TGAACTTCGGCGACCTTTAT 57.245 45.000 10.16 0.00 0.00 1.40
3 4 1.670791 TTTGAACTTCGGCGACCTTT 58.329 45.000 10.16 2.25 0.00 3.11
4 5 1.602377 CTTTTGAACTTCGGCGACCTT 59.398 47.619 10.16 3.01 0.00 3.50
5 6 1.202604 TCTTTTGAACTTCGGCGACCT 60.203 47.619 10.16 0.00 0.00 3.85
6 7 1.223187 TCTTTTGAACTTCGGCGACC 58.777 50.000 10.16 0.00 0.00 4.79
7 8 3.328237 TTTCTTTTGAACTTCGGCGAC 57.672 42.857 10.16 0.00 38.30 5.19
8 9 4.358494 TTTTTCTTTTGAACTTCGGCGA 57.642 36.364 4.99 4.99 38.30 5.54
68 69 0.598158 GCCACGTCGACCACAACTAA 60.598 55.000 10.58 0.00 0.00 2.24
99 133 0.387929 GTCTCTGTGACGTGGAACCA 59.612 55.000 0.00 0.00 35.81 3.67
134 168 0.179097 GAGCCGTCTGATCTGGAACC 60.179 60.000 0.00 0.00 0.00 3.62
135 169 0.179097 GGAGCCGTCTGATCTGGAAC 60.179 60.000 0.00 0.00 0.00 3.62
173 207 0.181350 GGAAAGGGATGAGGATGCGT 59.819 55.000 0.00 0.00 0.00 5.24
189 223 1.219213 GAGAGATCTGGAGGGAGGGAA 59.781 57.143 0.00 0.00 0.00 3.97
197 231 2.430332 GTGGGAACTGAGAGATCTGGAG 59.570 54.545 0.00 0.00 0.00 3.86
198 232 2.461695 GTGGGAACTGAGAGATCTGGA 58.538 52.381 0.00 0.00 0.00 3.86
199 233 1.484240 GGTGGGAACTGAGAGATCTGG 59.516 57.143 0.00 0.00 0.00 3.86
200 234 1.484240 GGGTGGGAACTGAGAGATCTG 59.516 57.143 0.00 0.00 0.00 2.90
201 235 1.079490 TGGGTGGGAACTGAGAGATCT 59.921 52.381 0.00 0.00 0.00 2.75
204 238 0.836400 GGTGGGTGGGAACTGAGAGA 60.836 60.000 0.00 0.00 0.00 3.10
216 250 1.687493 GGGGAGAGAGAGGTGGGTG 60.687 68.421 0.00 0.00 0.00 4.61
217 251 2.781406 GGGGAGAGAGAGGTGGGT 59.219 66.667 0.00 0.00 0.00 4.51
218 252 1.934459 TACGGGGAGAGAGAGGTGGG 61.934 65.000 0.00 0.00 0.00 4.61
220 254 1.104577 GCTACGGGGAGAGAGAGGTG 61.105 65.000 0.00 0.00 0.00 4.00
222 256 0.536460 GAGCTACGGGGAGAGAGAGG 60.536 65.000 0.00 0.00 0.00 3.69
223 257 0.472471 AGAGCTACGGGGAGAGAGAG 59.528 60.000 0.00 0.00 0.00 3.20
224 258 0.470766 GAGAGCTACGGGGAGAGAGA 59.529 60.000 0.00 0.00 0.00 3.10
225 259 0.472471 AGAGAGCTACGGGGAGAGAG 59.528 60.000 0.00 0.00 0.00 3.20
269 330 2.612251 GAGAGGAGGGGAGGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
288 349 0.040646 TGGCTTCGAACCCTAGGAGA 59.959 55.000 11.48 1.01 0.00 3.71
307 368 2.351276 CTTTACCTGGCCGGCTGT 59.649 61.111 28.56 22.35 35.61 4.40
309 370 4.426313 GGCTTTACCTGGCCGGCT 62.426 66.667 28.56 9.11 38.91 5.52
324 394 3.873026 CTCGAGATCCGGGCATGGC 62.873 68.421 11.56 11.56 39.14 4.40
327 397 2.556459 CGACTCGAGATCCGGGCAT 61.556 63.158 21.68 0.00 44.17 4.40
328 398 2.960359 ATCGACTCGAGATCCGGGCA 62.960 60.000 21.68 4.45 44.17 5.36
329 399 2.190101 GATCGACTCGAGATCCGGGC 62.190 65.000 21.68 10.62 44.17 6.13
330 400 1.870383 GATCGACTCGAGATCCGGG 59.130 63.158 21.68 2.39 46.23 5.73
334 404 0.236187 CACCGGATCGACTCGAGATC 59.764 60.000 21.68 11.94 39.91 2.75
335 405 1.167155 CCACCGGATCGACTCGAGAT 61.167 60.000 21.68 1.65 39.91 2.75
336 406 1.818363 CCACCGGATCGACTCGAGA 60.818 63.158 21.68 0.00 39.91 4.04
338 408 2.045634 ACCACCGGATCGACTCGA 60.046 61.111 9.46 3.06 41.13 4.04
466 544 2.762472 CATGAACAAGCACGATTCGAC 58.238 47.619 13.95 4.43 0.00 4.20
490 568 2.203209 GGCGGCCTATCCAACCAG 60.203 66.667 12.87 0.00 32.34 4.00
491 569 2.690881 AGGCGGCCTATCCAACCA 60.691 61.111 22.47 0.00 34.04 3.67
493 571 2.203209 CCAGGCGGCCTATCCAAC 60.203 66.667 23.37 0.00 29.64 3.77
494 572 1.858739 AAACCAGGCGGCCTATCCAA 61.859 55.000 23.37 0.00 34.57 3.53
502 669 3.605013 AAAAATGAAACCAGGCGGC 57.395 47.368 0.00 0.00 34.57 6.53
527 694 2.856557 CTGACACAGCAGACATGTATCG 59.143 50.000 0.00 0.00 38.14 2.92
547 717 1.005289 ATGCATCCCCTGAGTCCCT 59.995 57.895 0.00 0.00 0.00 4.20
548 718 1.150081 CATGCATCCCCTGAGTCCC 59.850 63.158 0.00 0.00 0.00 4.46
549 719 0.257039 AACATGCATCCCCTGAGTCC 59.743 55.000 0.00 0.00 0.00 3.85
550 720 1.065199 TCAACATGCATCCCCTGAGTC 60.065 52.381 0.00 0.00 0.00 3.36
551 721 0.994247 TCAACATGCATCCCCTGAGT 59.006 50.000 0.00 0.00 0.00 3.41
552 722 2.133281 TTCAACATGCATCCCCTGAG 57.867 50.000 0.00 0.00 0.00 3.35
553 723 2.601240 TTTCAACATGCATCCCCTGA 57.399 45.000 0.00 0.00 0.00 3.86
554 724 2.159014 CCATTTCAACATGCATCCCCTG 60.159 50.000 0.00 0.00 0.00 4.45
555 725 2.112998 CCATTTCAACATGCATCCCCT 58.887 47.619 0.00 0.00 0.00 4.79
556 726 1.139455 CCCATTTCAACATGCATCCCC 59.861 52.381 0.00 0.00 0.00 4.81
557 727 1.832998 ACCCATTTCAACATGCATCCC 59.167 47.619 0.00 0.00 0.00 3.85
577 747 2.273557 GTTCGCCGGCTAGATTTTGTA 58.726 47.619 26.68 0.00 0.00 2.41
587 766 0.319469 CCAAAAATTGTTCGCCGGCT 60.319 50.000 26.68 0.00 0.00 5.52
600 779 9.589461 TGTAGAGATTTAATAACCACCCAAAAA 57.411 29.630 0.00 0.00 0.00 1.94
601 780 9.016438 GTGTAGAGATTTAATAACCACCCAAAA 57.984 33.333 0.00 0.00 0.00 2.44
657 844 6.256104 CAGAAACTAAGAGAGATCATGTGCTG 59.744 42.308 0.00 0.00 0.00 4.41
695 886 2.093869 GGTGCAGATGAAGTACCGGTTA 60.094 50.000 15.04 0.00 32.17 2.85
749 944 4.269183 TGTGGTATTATTGGGCAAGTGAG 58.731 43.478 0.00 0.00 0.00 3.51
802 1001 2.535984 CGCGATGAGACAATGGTAGAAC 59.464 50.000 0.00 0.00 0.00 3.01
818 1017 4.996976 GCATAGACATCCCGCGAT 57.003 55.556 8.23 0.00 0.00 4.58
821 1020 1.071605 GATTCGCATAGACATCCCGC 58.928 55.000 0.00 0.00 0.00 6.13
822 1021 2.332104 CTGATTCGCATAGACATCCCG 58.668 52.381 0.00 0.00 0.00 5.14
823 1022 2.300152 TCCTGATTCGCATAGACATCCC 59.700 50.000 0.00 0.00 0.00 3.85
824 1023 3.667497 TCCTGATTCGCATAGACATCC 57.333 47.619 0.00 0.00 0.00 3.51
833 1065 1.536766 CAGTTGCTTTCCTGATTCGCA 59.463 47.619 0.00 0.00 0.00 5.10
842 1074 5.335191 CCACTAAGACAATCAGTTGCTTTCC 60.335 44.000 0.00 0.00 38.96 3.13
881 1113 4.440880 CATGACAGGCCAGAAAACAAAAA 58.559 39.130 5.01 0.00 0.00 1.94
882 1114 3.740764 GCATGACAGGCCAGAAAACAAAA 60.741 43.478 5.01 0.00 0.00 2.44
883 1115 2.224018 GCATGACAGGCCAGAAAACAAA 60.224 45.455 5.01 0.00 0.00 2.83
884 1116 1.340889 GCATGACAGGCCAGAAAACAA 59.659 47.619 5.01 0.00 0.00 2.83
885 1117 0.961019 GCATGACAGGCCAGAAAACA 59.039 50.000 5.01 0.00 0.00 2.83
886 1118 1.251251 AGCATGACAGGCCAGAAAAC 58.749 50.000 8.76 0.00 0.00 2.43
887 1119 1.999648 AAGCATGACAGGCCAGAAAA 58.000 45.000 8.76 0.00 0.00 2.29
899 1131 5.334802 CGTGTAAAATGGTCAGAAAGCATGA 60.335 40.000 0.00 0.00 45.23 3.07
1224 1468 2.843545 TGGCCTGAAACCACTCCC 59.156 61.111 3.32 0.00 30.29 4.30
1445 1700 8.077991 TGCTCACAGAAACTGAAATTCATAAAG 58.922 33.333 5.76 0.00 35.18 1.85
1464 1719 1.024271 GCACCTCAAAGTTGCTCACA 58.976 50.000 0.00 0.00 0.00 3.58
1534 1790 2.224314 GCGGAAACTGAAACTGAGGAAG 59.776 50.000 0.00 0.00 0.00 3.46
1539 1795 2.948979 ACAATGCGGAAACTGAAACTGA 59.051 40.909 0.00 0.00 0.00 3.41
1542 1798 3.626028 AGACAATGCGGAAACTGAAAC 57.374 42.857 0.00 0.00 0.00 2.78
1543 1799 4.097135 TGAAAGACAATGCGGAAACTGAAA 59.903 37.500 0.00 0.00 0.00 2.69
1544 1800 3.629855 TGAAAGACAATGCGGAAACTGAA 59.370 39.130 0.00 0.00 0.00 3.02
1545 1801 3.210227 TGAAAGACAATGCGGAAACTGA 58.790 40.909 0.00 0.00 0.00 3.41
1547 1803 3.569701 ACATGAAAGACAATGCGGAAACT 59.430 39.130 0.00 0.00 0.00 2.66
1571 1869 4.083324 GCATCGGATCAGAAAGAAACACAA 60.083 41.667 0.00 0.00 0.00 3.33
1589 1887 1.002792 CAGCATCAACATGGAGCATCG 60.003 52.381 0.00 0.00 34.37 3.84
1599 1897 4.061596 TCGTTAACATCACAGCATCAACA 58.938 39.130 6.39 0.00 0.00 3.33
1603 1901 2.030946 GGCTCGTTAACATCACAGCATC 59.969 50.000 6.39 0.00 0.00 3.91
1666 1964 4.746611 AGCAGCACAAGCAAAAAGAATTAC 59.253 37.500 0.00 0.00 45.49 1.89
1739 2066 3.256383 ACATTGCAAATAACAGCAGCAGA 59.744 39.130 1.71 0.00 42.39 4.26
1740 2067 3.581755 ACATTGCAAATAACAGCAGCAG 58.418 40.909 1.71 0.00 42.39 4.24
1741 2068 3.663995 ACATTGCAAATAACAGCAGCA 57.336 38.095 1.71 0.00 42.39 4.41
1742 2069 6.464895 TTTAACATTGCAAATAACAGCAGC 57.535 33.333 1.71 0.00 42.39 5.25
1743 2070 8.075593 AGTTTTAACATTGCAAATAACAGCAG 57.924 30.769 1.71 0.00 42.39 4.24
1744 2071 9.703892 ATAGTTTTAACATTGCAAATAACAGCA 57.296 25.926 1.71 0.00 39.32 4.41
1765 2092 9.525409 GCAGATGAATGCTTTTCAATAATAGTT 57.475 29.630 6.73 0.00 43.07 2.24
1780 2107 1.306148 TAGCAGCAGCAGATGAATGC 58.694 50.000 3.17 7.94 46.88 3.56
1781 2108 4.290969 CAAATAGCAGCAGCAGATGAATG 58.709 43.478 3.17 0.00 45.49 2.67
1782 2109 3.243434 GCAAATAGCAGCAGCAGATGAAT 60.243 43.478 3.17 0.00 45.49 2.57
1783 2110 2.098607 GCAAATAGCAGCAGCAGATGAA 59.901 45.455 3.17 0.00 45.49 2.57
1784 2111 1.674441 GCAAATAGCAGCAGCAGATGA 59.326 47.619 3.17 0.00 45.49 2.92
1785 2112 2.121116 GCAAATAGCAGCAGCAGATG 57.879 50.000 3.17 0.00 45.49 2.90
1835 2162 1.522668 ACGCAATCTAACAGCAGCAA 58.477 45.000 0.00 0.00 0.00 3.91
1870 2197 2.224597 TGAGTCCAGCATTTTCAGCAGA 60.225 45.455 0.00 0.00 0.00 4.26
1951 2363 7.926018 GGTCATCATGTTACCTTTTTCAAAACT 59.074 33.333 0.00 0.00 0.00 2.66
2031 2448 5.124297 CCATCTCCCAATTTTGCAAAAATCC 59.876 40.000 27.10 0.00 0.00 3.01
2040 2457 6.543430 TCCAATTACCATCTCCCAATTTTG 57.457 37.500 0.00 0.00 0.00 2.44
2059 2476 8.961294 ACAAATTTTGAAATCTGATGTTCCAA 57.039 26.923 15.81 0.00 0.00 3.53
2089 2506 0.179004 TGTGTTCGCCCCTTTCATGT 60.179 50.000 0.00 0.00 0.00 3.21
2090 2507 0.958091 TTGTGTTCGCCCCTTTCATG 59.042 50.000 0.00 0.00 0.00 3.07
2091 2508 0.958822 GTTGTGTTCGCCCCTTTCAT 59.041 50.000 0.00 0.00 0.00 2.57
2092 2509 0.394488 TGTTGTGTTCGCCCCTTTCA 60.394 50.000 0.00 0.00 0.00 2.69
2093 2510 0.030235 GTGTTGTGTTCGCCCCTTTC 59.970 55.000 0.00 0.00 0.00 2.62
2094 2511 0.681564 TGTGTTGTGTTCGCCCCTTT 60.682 50.000 0.00 0.00 0.00 3.11
2095 2512 0.467290 ATGTGTTGTGTTCGCCCCTT 60.467 50.000 0.00 0.00 0.00 3.95
2096 2513 1.150536 ATGTGTTGTGTTCGCCCCT 59.849 52.632 0.00 0.00 0.00 4.79
2097 2514 1.169661 TCATGTGTTGTGTTCGCCCC 61.170 55.000 0.00 0.00 0.00 5.80
2098 2515 0.881118 ATCATGTGTTGTGTTCGCCC 59.119 50.000 0.00 0.00 0.00 6.13
2099 2516 1.401409 CCATCATGTGTTGTGTTCGCC 60.401 52.381 0.00 0.00 0.00 5.54
2100 2517 1.401409 CCCATCATGTGTTGTGTTCGC 60.401 52.381 0.00 0.00 0.00 4.70
2101 2518 1.401409 GCCCATCATGTGTTGTGTTCG 60.401 52.381 0.00 0.00 0.00 3.95
2102 2519 1.612950 TGCCCATCATGTGTTGTGTTC 59.387 47.619 0.00 0.00 0.00 3.18
2103 2520 1.702182 TGCCCATCATGTGTTGTGTT 58.298 45.000 0.00 0.00 0.00 3.32
2104 2521 1.546923 CATGCCCATCATGTGTTGTGT 59.453 47.619 0.00 0.00 45.79 3.72
2105 2522 2.287393 CATGCCCATCATGTGTTGTG 57.713 50.000 0.00 0.00 45.79 3.33
2113 2530 3.257375 GCATCATTGTACATGCCCATCAT 59.743 43.478 7.77 0.00 39.70 2.45
2114 2531 2.624364 GCATCATTGTACATGCCCATCA 59.376 45.455 7.77 0.00 39.70 3.07
2115 2532 2.889045 AGCATCATTGTACATGCCCATC 59.111 45.455 14.08 0.00 45.63 3.51
2116 2533 2.953453 AGCATCATTGTACATGCCCAT 58.047 42.857 14.08 0.00 45.63 4.00
2117 2534 2.440517 AGCATCATTGTACATGCCCA 57.559 45.000 14.08 0.00 45.63 5.36
2118 2535 4.330250 AGATAGCATCATTGTACATGCCC 58.670 43.478 14.08 5.86 45.63 5.36
2119 2536 5.954296 AAGATAGCATCATTGTACATGCC 57.046 39.130 14.08 1.71 45.63 4.40
2120 2537 6.875726 TCCTAAGATAGCATCATTGTACATGC 59.124 38.462 10.53 10.53 44.96 4.06
2121 2538 8.093307 ACTCCTAAGATAGCATCATTGTACATG 58.907 37.037 0.00 0.00 0.00 3.21
2122 2539 8.093307 CACTCCTAAGATAGCATCATTGTACAT 58.907 37.037 0.00 0.00 0.00 2.29
2123 2540 7.436933 CACTCCTAAGATAGCATCATTGTACA 58.563 38.462 0.00 0.00 0.00 2.90
2124 2541 6.367422 GCACTCCTAAGATAGCATCATTGTAC 59.633 42.308 0.00 0.00 0.00 2.90
2125 2542 6.268617 AGCACTCCTAAGATAGCATCATTGTA 59.731 38.462 0.00 0.00 0.00 2.41
2126 2543 5.071519 AGCACTCCTAAGATAGCATCATTGT 59.928 40.000 0.00 0.00 0.00 2.71
2127 2544 5.549347 AGCACTCCTAAGATAGCATCATTG 58.451 41.667 0.00 0.00 0.00 2.82
2128 2545 5.822132 AGCACTCCTAAGATAGCATCATT 57.178 39.130 0.00 0.00 0.00 2.57
2129 2546 6.440010 ACATAGCACTCCTAAGATAGCATCAT 59.560 38.462 0.00 0.00 0.00 2.45
2130 2547 5.777223 ACATAGCACTCCTAAGATAGCATCA 59.223 40.000 0.00 0.00 0.00 3.07
2131 2548 6.279513 ACATAGCACTCCTAAGATAGCATC 57.720 41.667 0.00 0.00 0.00 3.91
2132 2549 7.178573 TCTACATAGCACTCCTAAGATAGCAT 58.821 38.462 0.00 0.00 0.00 3.79
2133 2550 6.543735 TCTACATAGCACTCCTAAGATAGCA 58.456 40.000 0.00 0.00 0.00 3.49
2134 2551 7.455641 TTCTACATAGCACTCCTAAGATAGC 57.544 40.000 0.00 0.00 0.00 2.97
2142 2559 8.874156 TCATCATTTATTCTACATAGCACTCCT 58.126 33.333 0.00 0.00 0.00 3.69
2143 2560 9.149225 CTCATCATTTATTCTACATAGCACTCC 57.851 37.037 0.00 0.00 0.00 3.85
2144 2561 9.149225 CCTCATCATTTATTCTACATAGCACTC 57.851 37.037 0.00 0.00 0.00 3.51
2145 2562 8.654997 ACCTCATCATTTATTCTACATAGCACT 58.345 33.333 0.00 0.00 0.00 4.40
2146 2563 8.715998 CACCTCATCATTTATTCTACATAGCAC 58.284 37.037 0.00 0.00 0.00 4.40
2147 2564 7.879677 CCACCTCATCATTTATTCTACATAGCA 59.120 37.037 0.00 0.00 0.00 3.49
2148 2565 8.097038 TCCACCTCATCATTTATTCTACATAGC 58.903 37.037 0.00 0.00 0.00 2.97
2149 2566 9.650539 CTCCACCTCATCATTTATTCTACATAG 57.349 37.037 0.00 0.00 0.00 2.23
2150 2567 9.379770 TCTCCACCTCATCATTTATTCTACATA 57.620 33.333 0.00 0.00 0.00 2.29
2151 2568 8.267620 TCTCCACCTCATCATTTATTCTACAT 57.732 34.615 0.00 0.00 0.00 2.29
2152 2569 7.675161 TCTCCACCTCATCATTTATTCTACA 57.325 36.000 0.00 0.00 0.00 2.74
2153 2570 8.424918 TCTTCTCCACCTCATCATTTATTCTAC 58.575 37.037 0.00 0.00 0.00 2.59
2154 2571 8.553085 TCTTCTCCACCTCATCATTTATTCTA 57.447 34.615 0.00 0.00 0.00 2.10
2155 2572 7.346698 TCTCTTCTCCACCTCATCATTTATTCT 59.653 37.037 0.00 0.00 0.00 2.40
2156 2573 7.504403 TCTCTTCTCCACCTCATCATTTATTC 58.496 38.462 0.00 0.00 0.00 1.75
2157 2574 7.346698 TCTCTCTTCTCCACCTCATCATTTATT 59.653 37.037 0.00 0.00 0.00 1.40
2158 2575 6.843333 TCTCTCTTCTCCACCTCATCATTTAT 59.157 38.462 0.00 0.00 0.00 1.40
2159 2576 6.197903 TCTCTCTTCTCCACCTCATCATTTA 58.802 40.000 0.00 0.00 0.00 1.40
2160 2577 5.028802 TCTCTCTTCTCCACCTCATCATTT 58.971 41.667 0.00 0.00 0.00 2.32
2161 2578 4.618635 TCTCTCTTCTCCACCTCATCATT 58.381 43.478 0.00 0.00 0.00 2.57
2162 2579 4.262891 TCTCTCTTCTCCACCTCATCAT 57.737 45.455 0.00 0.00 0.00 2.45
2163 2580 3.746792 TCTCTCTTCTCCACCTCATCA 57.253 47.619 0.00 0.00 0.00 3.07
2164 2581 4.023291 AGTTCTCTCTTCTCCACCTCATC 58.977 47.826 0.00 0.00 0.00 2.92
2165 2582 4.023291 GAGTTCTCTCTTCTCCACCTCAT 58.977 47.826 0.00 0.00 37.68 2.90
2166 2583 3.181428 TGAGTTCTCTCTTCTCCACCTCA 60.181 47.826 1.53 0.00 40.98 3.86
2167 2584 3.426615 TGAGTTCTCTCTTCTCCACCTC 58.573 50.000 1.53 0.00 40.98 3.85
2168 2585 3.534357 TGAGTTCTCTCTTCTCCACCT 57.466 47.619 1.53 0.00 40.98 4.00
2169 2586 5.654650 TCTTATGAGTTCTCTCTTCTCCACC 59.345 44.000 1.53 0.00 40.98 4.61
2170 2587 6.767524 TCTTATGAGTTCTCTCTTCTCCAC 57.232 41.667 1.53 0.00 40.98 4.02
2171 2588 7.782897 TTTCTTATGAGTTCTCTCTTCTCCA 57.217 36.000 1.53 0.00 40.98 3.86
2172 2589 8.527810 TCTTTTCTTATGAGTTCTCTCTTCTCC 58.472 37.037 1.53 0.00 40.98 3.71
2173 2590 9.353999 GTCTTTTCTTATGAGTTCTCTCTTCTC 57.646 37.037 1.53 0.00 40.98 2.87
2174 2591 9.088987 AGTCTTTTCTTATGAGTTCTCTCTTCT 57.911 33.333 1.53 0.00 40.98 2.85
2175 2592 9.705290 AAGTCTTTTCTTATGAGTTCTCTCTTC 57.295 33.333 1.53 0.00 40.98 2.87
2176 2593 9.487790 CAAGTCTTTTCTTATGAGTTCTCTCTT 57.512 33.333 1.53 0.00 40.98 2.85
2177 2594 8.646900 ACAAGTCTTTTCTTATGAGTTCTCTCT 58.353 33.333 1.53 0.00 40.98 3.10
2178 2595 8.825667 ACAAGTCTTTTCTTATGAGTTCTCTC 57.174 34.615 1.53 0.00 40.79 3.20
2179 2596 8.646900 AGACAAGTCTTTTCTTATGAGTTCTCT 58.353 33.333 0.00 0.00 36.31 3.10
2180 2597 8.825667 AGACAAGTCTTTTCTTATGAGTTCTC 57.174 34.615 0.00 0.00 36.31 2.87
2234 2651 9.204570 GCGGTGAGACATATTGTACTAAAATAT 57.795 33.333 0.00 0.00 31.76 1.28
2235 2652 8.198778 TGCGGTGAGACATATTGTACTAAAATA 58.801 33.333 0.00 0.00 0.00 1.40
2236 2653 7.045416 TGCGGTGAGACATATTGTACTAAAAT 58.955 34.615 0.00 0.00 0.00 1.82
2237 2654 6.399743 TGCGGTGAGACATATTGTACTAAAA 58.600 36.000 0.00 0.00 0.00 1.52
2238 2655 5.968254 TGCGGTGAGACATATTGTACTAAA 58.032 37.500 0.00 0.00 0.00 1.85
2239 2656 5.585820 TGCGGTGAGACATATTGTACTAA 57.414 39.130 0.00 0.00 0.00 2.24
2240 2657 5.784578 ATGCGGTGAGACATATTGTACTA 57.215 39.130 0.00 0.00 0.00 1.82
2241 2658 4.672587 ATGCGGTGAGACATATTGTACT 57.327 40.909 0.00 0.00 0.00 2.73
2242 2659 5.734855 AAATGCGGTGAGACATATTGTAC 57.265 39.130 0.00 0.00 0.00 2.90
2243 2660 6.751514 AAAAATGCGGTGAGACATATTGTA 57.248 33.333 0.00 0.00 0.00 2.41
2244 2661 5.643379 AAAAATGCGGTGAGACATATTGT 57.357 34.783 0.00 0.00 0.00 2.71
2245 2662 6.038161 TCCTAAAAATGCGGTGAGACATATTG 59.962 38.462 0.00 0.00 0.00 1.90
2246 2663 6.119536 TCCTAAAAATGCGGTGAGACATATT 58.880 36.000 0.00 0.00 0.00 1.28
2247 2664 5.680619 TCCTAAAAATGCGGTGAGACATAT 58.319 37.500 0.00 0.00 0.00 1.78
2248 2665 5.092554 TCCTAAAAATGCGGTGAGACATA 57.907 39.130 0.00 0.00 0.00 2.29
2249 2666 3.950397 TCCTAAAAATGCGGTGAGACAT 58.050 40.909 0.00 0.00 0.00 3.06
2250 2667 3.410631 TCCTAAAAATGCGGTGAGACA 57.589 42.857 0.00 0.00 0.00 3.41
2251 2668 4.965119 ATTCCTAAAAATGCGGTGAGAC 57.035 40.909 0.00 0.00 0.00 3.36
2252 2669 4.574828 GCTATTCCTAAAAATGCGGTGAGA 59.425 41.667 0.00 0.00 0.00 3.27
2253 2670 4.576463 AGCTATTCCTAAAAATGCGGTGAG 59.424 41.667 0.00 0.00 0.00 3.51
2254 2671 4.523083 AGCTATTCCTAAAAATGCGGTGA 58.477 39.130 0.00 0.00 0.00 4.02
2255 2672 4.900635 AGCTATTCCTAAAAATGCGGTG 57.099 40.909 0.00 0.00 0.00 4.94
2256 2673 5.681639 ACTAGCTATTCCTAAAAATGCGGT 58.318 37.500 0.00 0.00 0.00 5.68
2257 2674 6.038271 ACAACTAGCTATTCCTAAAAATGCGG 59.962 38.462 0.00 0.00 0.00 5.69
2258 2675 7.016361 ACAACTAGCTATTCCTAAAAATGCG 57.984 36.000 0.00 0.00 0.00 4.73
2268 2685 9.731819 GCCTTATTTTAAACAACTAGCTATTCC 57.268 33.333 0.00 0.00 0.00 3.01
2273 2690 9.734984 TCTTAGCCTTATTTTAAACAACTAGCT 57.265 29.630 0.00 0.00 0.00 3.32
2274 2691 9.989869 CTCTTAGCCTTATTTTAAACAACTAGC 57.010 33.333 0.00 0.00 0.00 3.42
2280 2697 9.174166 GGTCATCTCTTAGCCTTATTTTAAACA 57.826 33.333 0.00 0.00 0.00 2.83
2281 2698 9.397280 AGGTCATCTCTTAGCCTTATTTTAAAC 57.603 33.333 0.00 0.00 0.00 2.01
2285 2702 9.566432 CAATAGGTCATCTCTTAGCCTTATTTT 57.434 33.333 0.00 0.00 0.00 1.82
2286 2703 8.718656 ACAATAGGTCATCTCTTAGCCTTATTT 58.281 33.333 0.00 0.00 0.00 1.40
2287 2704 8.268878 ACAATAGGTCATCTCTTAGCCTTATT 57.731 34.615 0.00 0.00 0.00 1.40
2288 2705 7.863901 ACAATAGGTCATCTCTTAGCCTTAT 57.136 36.000 0.00 0.00 0.00 1.73
2289 2706 8.225416 TCTACAATAGGTCATCTCTTAGCCTTA 58.775 37.037 0.00 0.00 0.00 2.69
2290 2707 7.014808 GTCTACAATAGGTCATCTCTTAGCCTT 59.985 40.741 0.00 0.00 0.00 4.35
2291 2708 6.492087 GTCTACAATAGGTCATCTCTTAGCCT 59.508 42.308 0.00 0.00 0.00 4.58
2292 2709 6.265649 TGTCTACAATAGGTCATCTCTTAGCC 59.734 42.308 0.00 0.00 0.00 3.93
2293 2710 7.278461 TGTCTACAATAGGTCATCTCTTAGC 57.722 40.000 0.00 0.00 0.00 3.09
2296 2713 9.965902 AAAAATGTCTACAATAGGTCATCTCTT 57.034 29.630 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.