Multiple sequence alignment - TraesCS2A01G583600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G583600 chr2A 100.000 2666 0 0 1 2666 775380157 775377492 0.000000e+00 4924.0
1 TraesCS2A01G583600 chr2A 93.117 247 14 3 1 245 22164454 22164699 2.520000e-95 359.0
2 TraesCS2A01G583600 chr2A 87.023 262 22 8 344 604 775429190 775428940 4.340000e-73 285.0
3 TraesCS2A01G583600 chr2D 88.932 1816 101 51 242 1995 649337602 649339379 0.000000e+00 2148.0
4 TraesCS2A01G583600 chr2D 92.241 348 10 6 2328 2666 649339750 649340089 6.680000e-131 477.0
5 TraesCS2A01G583600 chr2D 94.191 241 14 0 1 241 607026004 607026244 4.190000e-98 368.0
6 TraesCS2A01G583600 chr2D 86.348 293 20 11 321 611 649313566 649313840 4.310000e-78 302.0
7 TraesCS2A01G583600 chr2D 90.789 152 11 3 2061 2210 649339471 649339621 1.620000e-47 200.0
8 TraesCS2A01G583600 chr2D 93.750 64 2 2 2267 2329 649339631 649339693 7.860000e-16 95.3
9 TraesCS2A01G583600 chr2B 90.827 1101 46 29 697 1753 785208195 785209284 0.000000e+00 1423.0
10 TraesCS2A01G583600 chr2B 84.457 534 37 24 382 893 785198219 785198728 3.990000e-133 484.0
11 TraesCS2A01G583600 chr2B 85.417 480 24 22 2061 2500 785209605 785210078 8.700000e-125 457.0
12 TraesCS2A01G583600 chr2B 84.324 370 28 13 299 664 785207777 785208120 4.250000e-88 335.0
13 TraesCS2A01G583600 chr2B 97.857 140 3 0 2527 2666 785210072 785210211 2.650000e-60 243.0
14 TraesCS2A01G583600 chr2B 82.264 265 13 13 1745 1978 785209306 785209567 5.820000e-47 198.0
15 TraesCS2A01G583600 chr6A 96.266 241 9 0 1 241 519225024 519224784 1.920000e-106 396.0
16 TraesCS2A01G583600 chr6A 95.000 240 12 0 5 244 604629976 604629737 6.970000e-101 377.0
17 TraesCS2A01G583600 chr5B 94.378 249 13 1 1 248 349357088 349357336 5.390000e-102 381.0
18 TraesCS2A01G583600 chr5B 75.000 180 34 9 1113 1288 226759381 226759553 3.680000e-09 73.1
19 TraesCS2A01G583600 chr1A 94.262 244 14 0 1 244 21990785 21990542 9.010000e-100 374.0
20 TraesCS2A01G583600 chr1D 94.191 241 13 1 1 241 426868553 426868792 1.510000e-97 366.0
21 TraesCS2A01G583600 chr6D 93.443 244 16 0 1 244 60541329 60541086 1.950000e-96 363.0
22 TraesCS2A01G583600 chr5D 93.776 241 14 1 1 241 475188004 475188243 7.020000e-96 361.0
23 TraesCS2A01G583600 chr5D 74.194 279 46 19 1098 1366 212627341 212627603 2.830000e-15 93.5
24 TraesCS2A01G583600 chr4D 71.492 449 95 24 1113 1540 93841294 93841730 3.660000e-14 89.8
25 TraesCS2A01G583600 chr5A 73.462 260 54 13 1113 1366 276111885 276112135 1.700000e-12 84.2
26 TraesCS2A01G583600 chr4A 71.366 454 93 26 1113 1543 487868894 487868455 1.700000e-12 84.2
27 TraesCS2A01G583600 chr4B 71.554 341 80 15 1235 1568 132331799 132332129 2.850000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G583600 chr2A 775377492 775380157 2665 True 4924.000 4924 100.0000 1 2666 1 chr2A.!!$R1 2665
1 TraesCS2A01G583600 chr2D 649337602 649340089 2487 False 730.075 2148 91.4280 242 2666 4 chr2D.!!$F3 2424
2 TraesCS2A01G583600 chr2B 785207777 785210211 2434 False 531.200 1423 88.1378 299 2666 5 chr2B.!!$F2 2367
3 TraesCS2A01G583600 chr2B 785198219 785198728 509 False 484.000 484 84.4570 382 893 1 chr2B.!!$F1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.03563 GTGCCTCTGCTGGACTGAAT 60.036 55.0 0.0 0.0 38.71 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 2192 0.233332 GCTTGAGCGACACTGTTCAC 59.767 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.706492 TGCATTTTTATTTTGATCAGATGGAC 57.294 30.769 0.00 0.00 0.00 4.02
26 27 8.533657 TGCATTTTTATTTTGATCAGATGGACT 58.466 29.630 0.00 0.00 0.00 3.85
27 28 9.374838 GCATTTTTATTTTGATCAGATGGACTT 57.625 29.630 0.00 0.00 0.00 3.01
39 40 9.685276 TGATCAGATGGACTTATTTGTAAATGT 57.315 29.630 0.00 0.00 0.00 2.71
46 47 9.762381 ATGGACTTATTTGTAAATGTTTAGGGA 57.238 29.630 0.27 0.00 0.00 4.20
47 48 9.016438 TGGACTTATTTGTAAATGTTTAGGGAC 57.984 33.333 0.27 0.00 0.00 4.46
48 49 8.464404 GGACTTATTTGTAAATGTTTAGGGACC 58.536 37.037 0.27 0.00 0.00 4.46
49 50 9.239551 GACTTATTTGTAAATGTTTAGGGACCT 57.760 33.333 0.00 0.00 0.00 3.85
50 51 9.020731 ACTTATTTGTAAATGTTTAGGGACCTG 57.979 33.333 0.00 0.00 0.00 4.00
51 52 8.943594 TTATTTGTAAATGTTTAGGGACCTGT 57.056 30.769 0.00 0.00 0.00 4.00
52 53 7.849322 ATTTGTAAATGTTTAGGGACCTGTT 57.151 32.000 0.00 0.00 0.00 3.16
53 54 7.663043 TTTGTAAATGTTTAGGGACCTGTTT 57.337 32.000 0.00 0.00 0.00 2.83
54 55 6.642707 TGTAAATGTTTAGGGACCTGTTTG 57.357 37.500 0.00 0.00 0.00 2.93
55 56 4.600692 AAATGTTTAGGGACCTGTTTGC 57.399 40.909 0.00 0.00 0.00 3.68
56 57 3.525800 ATGTTTAGGGACCTGTTTGCT 57.474 42.857 0.00 0.00 0.00 3.91
57 58 2.582052 TGTTTAGGGACCTGTTTGCTG 58.418 47.619 0.00 0.00 0.00 4.41
58 59 2.092103 TGTTTAGGGACCTGTTTGCTGT 60.092 45.455 0.00 0.00 0.00 4.40
59 60 3.136809 TGTTTAGGGACCTGTTTGCTGTA 59.863 43.478 0.00 0.00 0.00 2.74
60 61 3.695830 TTAGGGACCTGTTTGCTGTAG 57.304 47.619 0.00 0.00 0.00 2.74
61 62 1.729586 AGGGACCTGTTTGCTGTAGA 58.270 50.000 0.00 0.00 0.00 2.59
62 63 2.269940 AGGGACCTGTTTGCTGTAGAT 58.730 47.619 0.00 0.00 0.00 1.98
63 64 3.450904 AGGGACCTGTTTGCTGTAGATA 58.549 45.455 0.00 0.00 0.00 1.98
64 65 4.040755 AGGGACCTGTTTGCTGTAGATAT 58.959 43.478 0.00 0.00 0.00 1.63
65 66 5.216622 AGGGACCTGTTTGCTGTAGATATA 58.783 41.667 0.00 0.00 0.00 0.86
66 67 5.846714 AGGGACCTGTTTGCTGTAGATATAT 59.153 40.000 0.00 0.00 0.00 0.86
67 68 6.330250 AGGGACCTGTTTGCTGTAGATATATT 59.670 38.462 0.00 0.00 0.00 1.28
68 69 6.998673 GGGACCTGTTTGCTGTAGATATATTT 59.001 38.462 0.00 0.00 0.00 1.40
69 70 7.041098 GGGACCTGTTTGCTGTAGATATATTTG 60.041 40.741 0.00 0.00 0.00 2.32
70 71 7.499232 GGACCTGTTTGCTGTAGATATATTTGT 59.501 37.037 0.00 0.00 0.00 2.83
71 72 8.213518 ACCTGTTTGCTGTAGATATATTTGTG 57.786 34.615 0.00 0.00 0.00 3.33
72 73 7.283127 ACCTGTTTGCTGTAGATATATTTGTGG 59.717 37.037 0.00 0.00 0.00 4.17
73 74 7.026631 TGTTTGCTGTAGATATATTTGTGGC 57.973 36.000 0.00 0.00 0.00 5.01
74 75 5.922739 TTGCTGTAGATATATTTGTGGCG 57.077 39.130 0.00 0.00 0.00 5.69
75 76 3.745975 TGCTGTAGATATATTTGTGGCGC 59.254 43.478 0.00 0.00 0.00 6.53
76 77 3.997021 GCTGTAGATATATTTGTGGCGCT 59.003 43.478 7.64 0.00 0.00 5.92
77 78 4.452455 GCTGTAGATATATTTGTGGCGCTT 59.548 41.667 7.64 0.00 0.00 4.68
78 79 5.049405 GCTGTAGATATATTTGTGGCGCTTT 60.049 40.000 7.64 0.00 0.00 3.51
79 80 6.147164 GCTGTAGATATATTTGTGGCGCTTTA 59.853 38.462 7.64 0.00 0.00 1.85
80 81 7.148407 GCTGTAGATATATTTGTGGCGCTTTAT 60.148 37.037 7.64 0.00 0.00 1.40
81 82 8.615878 TGTAGATATATTTGTGGCGCTTTATT 57.384 30.769 7.64 0.00 0.00 1.40
82 83 9.062524 TGTAGATATATTTGTGGCGCTTTATTT 57.937 29.630 7.64 0.00 0.00 1.40
83 84 9.893305 GTAGATATATTTGTGGCGCTTTATTTT 57.107 29.630 7.64 0.00 0.00 1.82
101 102 3.602390 TTTTTAGTGCGTCTGCTGAAC 57.398 42.857 0.00 0.00 43.34 3.18
102 103 2.526304 TTTAGTGCGTCTGCTGAACT 57.474 45.000 0.00 0.00 43.34 3.01
103 104 1.783284 TTAGTGCGTCTGCTGAACTG 58.217 50.000 6.67 0.00 43.34 3.16
104 105 0.673985 TAGTGCGTCTGCTGAACTGT 59.326 50.000 6.67 0.00 43.34 3.55
105 106 0.179073 AGTGCGTCTGCTGAACTGTT 60.179 50.000 0.00 0.00 43.34 3.16
106 107 0.041839 GTGCGTCTGCTGAACTGTTG 60.042 55.000 0.00 0.00 43.34 3.33
107 108 1.082496 GCGTCTGCTGAACTGTTGC 60.082 57.895 0.00 0.00 38.39 4.17
108 109 1.202568 CGTCTGCTGAACTGTTGCG 59.797 57.895 0.00 0.00 0.00 4.85
109 110 1.082496 GTCTGCTGAACTGTTGCGC 60.082 57.895 0.00 0.00 0.00 6.09
110 111 2.127496 CTGCTGAACTGTTGCGCG 60.127 61.111 0.00 0.00 0.00 6.86
111 112 4.312231 TGCTGAACTGTTGCGCGC 62.312 61.111 27.26 27.26 0.00 6.86
112 113 4.017877 GCTGAACTGTTGCGCGCT 62.018 61.111 33.29 10.95 0.00 5.92
113 114 2.127496 CTGAACTGTTGCGCGCTG 60.127 61.111 33.29 20.59 0.00 5.18
114 115 2.885676 CTGAACTGTTGCGCGCTGT 61.886 57.895 33.29 21.24 0.00 4.40
115 116 2.127609 GAACTGTTGCGCGCTGTC 60.128 61.111 33.29 21.24 0.00 3.51
116 117 3.579626 GAACTGTTGCGCGCTGTCC 62.580 63.158 33.29 16.88 0.00 4.02
117 118 4.609018 ACTGTTGCGCGCTGTCCT 62.609 61.111 33.29 9.07 0.00 3.85
118 119 3.782244 CTGTTGCGCGCTGTCCTC 61.782 66.667 33.29 15.34 0.00 3.71
119 120 4.299547 TGTTGCGCGCTGTCCTCT 62.300 61.111 33.29 0.00 0.00 3.69
120 121 3.782244 GTTGCGCGCTGTCCTCTG 61.782 66.667 33.29 0.00 0.00 3.35
126 127 4.731612 CGCTGTCCTCTGCACGCT 62.732 66.667 0.00 0.00 38.20 5.07
127 128 2.573869 GCTGTCCTCTGCACGCTA 59.426 61.111 0.00 0.00 38.20 4.26
128 129 1.142748 GCTGTCCTCTGCACGCTAT 59.857 57.895 0.00 0.00 38.20 2.97
129 130 0.385751 GCTGTCCTCTGCACGCTATA 59.614 55.000 0.00 0.00 38.20 1.31
130 131 1.000283 GCTGTCCTCTGCACGCTATAT 60.000 52.381 0.00 0.00 38.20 0.86
131 132 2.546795 GCTGTCCTCTGCACGCTATATT 60.547 50.000 0.00 0.00 38.20 1.28
132 133 3.722147 CTGTCCTCTGCACGCTATATTT 58.278 45.455 0.00 0.00 0.00 1.40
133 134 4.122776 CTGTCCTCTGCACGCTATATTTT 58.877 43.478 0.00 0.00 0.00 1.82
134 135 4.513442 TGTCCTCTGCACGCTATATTTTT 58.487 39.130 0.00 0.00 0.00 1.94
135 136 4.332543 TGTCCTCTGCACGCTATATTTTTG 59.667 41.667 0.00 0.00 0.00 2.44
136 137 4.332819 GTCCTCTGCACGCTATATTTTTGT 59.667 41.667 0.00 0.00 0.00 2.83
137 138 4.332543 TCCTCTGCACGCTATATTTTTGTG 59.667 41.667 0.00 0.00 0.00 3.33
142 143 4.882671 CACGCTATATTTTTGTGCCTCT 57.117 40.909 0.00 0.00 0.00 3.69
143 144 4.591202 CACGCTATATTTTTGTGCCTCTG 58.409 43.478 0.00 0.00 0.00 3.35
144 145 3.065371 ACGCTATATTTTTGTGCCTCTGC 59.935 43.478 0.00 0.00 38.26 4.26
145 146 3.313526 CGCTATATTTTTGTGCCTCTGCT 59.686 43.478 0.00 0.00 38.71 4.24
146 147 4.604976 GCTATATTTTTGTGCCTCTGCTG 58.395 43.478 0.00 0.00 38.71 4.41
147 148 4.498682 GCTATATTTTTGTGCCTCTGCTGG 60.499 45.833 0.00 0.00 38.71 4.85
148 149 1.999648 ATTTTTGTGCCTCTGCTGGA 58.000 45.000 0.00 0.00 38.71 3.86
149 150 1.032014 TTTTTGTGCCTCTGCTGGAC 58.968 50.000 0.00 0.00 38.71 4.02
150 151 0.183492 TTTTGTGCCTCTGCTGGACT 59.817 50.000 0.00 0.00 38.71 3.85
151 152 0.535780 TTTGTGCCTCTGCTGGACTG 60.536 55.000 0.00 0.00 38.71 3.51
152 153 1.410050 TTGTGCCTCTGCTGGACTGA 61.410 55.000 0.00 0.00 38.71 3.41
153 154 1.372683 GTGCCTCTGCTGGACTGAA 59.627 57.895 0.00 0.00 38.71 3.02
154 155 0.035630 GTGCCTCTGCTGGACTGAAT 60.036 55.000 0.00 0.00 38.71 2.57
155 156 0.251354 TGCCTCTGCTGGACTGAATC 59.749 55.000 0.00 0.00 38.71 2.52
156 157 0.809241 GCCTCTGCTGGACTGAATCG 60.809 60.000 0.00 0.00 33.53 3.34
157 158 0.179089 CCTCTGCTGGACTGAATCGG 60.179 60.000 0.00 0.00 0.00 4.18
158 159 0.809241 CTCTGCTGGACTGAATCGGC 60.809 60.000 0.00 0.00 0.00 5.54
159 160 1.817099 CTGCTGGACTGAATCGGCC 60.817 63.158 0.00 0.00 0.00 6.13
160 161 2.268920 GCTGGACTGAATCGGCCA 59.731 61.111 2.24 5.40 0.00 5.36
161 162 2.109126 GCTGGACTGAATCGGCCAC 61.109 63.158 2.24 0.00 0.00 5.01
162 163 1.811266 CTGGACTGAATCGGCCACG 60.811 63.158 2.24 0.00 42.74 4.94
163 164 2.511600 GGACTGAATCGGCCACGG 60.512 66.667 2.24 0.00 41.39 4.94
164 165 3.195698 GACTGAATCGGCCACGGC 61.196 66.667 2.24 0.00 41.39 5.68
173 174 3.358707 GGCCACGGCGTGCTAAAA 61.359 61.111 33.15 0.00 43.06 1.52
174 175 2.696759 GGCCACGGCGTGCTAAAAT 61.697 57.895 33.15 0.00 43.06 1.82
175 176 1.211709 GCCACGGCGTGCTAAAATT 59.788 52.632 33.15 0.00 31.34 1.82
176 177 0.448593 GCCACGGCGTGCTAAAATTA 59.551 50.000 33.15 0.00 31.34 1.40
177 178 1.792632 GCCACGGCGTGCTAAAATTAC 60.793 52.381 33.15 9.92 31.34 1.89
178 179 1.735571 CCACGGCGTGCTAAAATTACT 59.264 47.619 33.15 0.00 31.34 2.24
179 180 2.931325 CCACGGCGTGCTAAAATTACTA 59.069 45.455 33.15 0.00 31.34 1.82
180 181 3.371591 CCACGGCGTGCTAAAATTACTAA 59.628 43.478 33.15 0.00 31.34 2.24
181 182 4.142859 CCACGGCGTGCTAAAATTACTAAA 60.143 41.667 33.15 0.00 31.34 1.85
182 183 5.383958 CACGGCGTGCTAAAATTACTAAAA 58.616 37.500 28.30 0.00 0.00 1.52
183 184 6.025280 CACGGCGTGCTAAAATTACTAAAAT 58.975 36.000 28.30 0.00 0.00 1.82
184 185 6.021782 CACGGCGTGCTAAAATTACTAAAATG 60.022 38.462 28.30 0.00 0.00 2.32
185 186 5.454232 CGGCGTGCTAAAATTACTAAAATGG 59.546 40.000 0.00 0.00 0.00 3.16
186 187 5.231357 GGCGTGCTAAAATTACTAAAATGGC 59.769 40.000 0.00 0.00 0.00 4.40
187 188 5.052633 GCGTGCTAAAATTACTAAAATGGCG 60.053 40.000 0.00 0.00 0.00 5.69
188 189 5.052633 CGTGCTAAAATTACTAAAATGGCGC 60.053 40.000 0.00 0.00 0.00 6.53
189 190 6.033966 GTGCTAAAATTACTAAAATGGCGCT 58.966 36.000 7.64 0.00 0.00 5.92
190 191 6.020678 GTGCTAAAATTACTAAAATGGCGCTG 60.021 38.462 7.64 0.00 0.00 5.18
191 192 6.033966 GCTAAAATTACTAAAATGGCGCTGT 58.966 36.000 7.64 0.00 0.00 4.40
192 193 7.148222 TGCTAAAATTACTAAAATGGCGCTGTA 60.148 33.333 7.64 0.00 0.00 2.74
193 194 7.698970 GCTAAAATTACTAAAATGGCGCTGTAA 59.301 33.333 7.64 6.37 0.00 2.41
194 195 9.562583 CTAAAATTACTAAAATGGCGCTGTAAA 57.437 29.630 7.64 0.00 0.00 2.01
195 196 8.819643 AAAATTACTAAAATGGCGCTGTAAAA 57.180 26.923 7.64 0.00 0.00 1.52
196 197 8.996024 AAATTACTAAAATGGCGCTGTAAAAT 57.004 26.923 7.64 0.00 0.00 1.82
197 198 8.996024 AATTACTAAAATGGCGCTGTAAAATT 57.004 26.923 7.64 0.01 0.00 1.82
201 202 8.996024 ACTAAAATGGCGCTGTAAAATTATTT 57.004 26.923 7.64 0.00 0.00 1.40
202 203 9.430623 ACTAAAATGGCGCTGTAAAATTATTTT 57.569 25.926 7.64 8.07 36.67 1.82
205 206 7.463469 AATGGCGCTGTAAAATTATTTTAGC 57.537 32.000 7.64 11.49 35.91 3.09
208 209 5.206206 CGCTGTAAAATTATTTTAGCGCG 57.794 39.130 24.66 24.60 45.26 6.86
209 210 4.372640 CGCTGTAAAATTATTTTAGCGCGC 60.373 41.667 26.66 26.66 45.26 6.86
210 211 4.085772 GCTGTAAAATTATTTTAGCGCGCC 60.086 41.667 30.33 10.31 35.91 6.53
211 212 4.029704 TGTAAAATTATTTTAGCGCGCCG 58.970 39.130 30.33 0.00 35.91 6.46
212 213 2.836479 AAATTATTTTAGCGCGCCGT 57.164 40.000 30.33 13.66 0.00 5.68
213 214 2.836479 AATTATTTTAGCGCGCCGTT 57.164 40.000 30.33 12.78 0.00 4.44
214 215 2.836479 ATTATTTTAGCGCGCCGTTT 57.164 40.000 30.33 12.34 0.00 3.60
215 216 1.884756 TTATTTTAGCGCGCCGTTTG 58.115 45.000 30.33 0.00 0.00 2.93
216 217 0.797542 TATTTTAGCGCGCCGTTTGT 59.202 45.000 30.33 11.01 0.00 2.83
217 218 0.039888 ATTTTAGCGCGCCGTTTGTT 60.040 45.000 30.33 10.14 0.00 2.83
218 219 0.248539 TTTTAGCGCGCCGTTTGTTT 60.249 45.000 30.33 9.26 0.00 2.83
219 220 0.930742 TTTAGCGCGCCGTTTGTTTG 60.931 50.000 30.33 0.00 0.00 2.93
220 221 2.718993 TTAGCGCGCCGTTTGTTTGG 62.719 55.000 30.33 0.00 0.00 3.28
223 224 4.279043 GCGCCGTTTGTTTGGGCT 62.279 61.111 0.00 0.00 44.68 5.19
224 225 2.415426 CGCCGTTTGTTTGGGCTT 59.585 55.556 0.00 0.00 44.68 4.35
225 226 1.660264 CGCCGTTTGTTTGGGCTTC 60.660 57.895 0.00 0.00 44.68 3.86
226 227 1.739667 GCCGTTTGTTTGGGCTTCT 59.260 52.632 0.00 0.00 43.52 2.85
227 228 0.597377 GCCGTTTGTTTGGGCTTCTG 60.597 55.000 0.00 0.00 43.52 3.02
228 229 0.744281 CCGTTTGTTTGGGCTTCTGT 59.256 50.000 0.00 0.00 0.00 3.41
229 230 1.136110 CCGTTTGTTTGGGCTTCTGTT 59.864 47.619 0.00 0.00 0.00 3.16
230 231 2.192624 CGTTTGTTTGGGCTTCTGTTG 58.807 47.619 0.00 0.00 0.00 3.33
231 232 2.549926 GTTTGTTTGGGCTTCTGTTGG 58.450 47.619 0.00 0.00 0.00 3.77
232 233 2.151502 TTGTTTGGGCTTCTGTTGGA 57.848 45.000 0.00 0.00 0.00 3.53
233 234 1.691196 TGTTTGGGCTTCTGTTGGAG 58.309 50.000 0.00 0.00 0.00 3.86
234 235 1.214175 TGTTTGGGCTTCTGTTGGAGA 59.786 47.619 0.00 0.00 0.00 3.71
235 236 1.609072 GTTTGGGCTTCTGTTGGAGAC 59.391 52.381 0.00 0.00 0.00 3.36
236 237 0.250295 TTGGGCTTCTGTTGGAGACG 60.250 55.000 0.00 0.00 0.00 4.18
237 238 2.035442 GGGCTTCTGTTGGAGACGC 61.035 63.158 0.00 0.00 43.68 5.19
238 239 1.004440 GGCTTCTGTTGGAGACGCT 60.004 57.895 0.00 0.00 43.85 5.07
239 240 1.016653 GGCTTCTGTTGGAGACGCTC 61.017 60.000 0.00 0.00 43.85 5.03
240 241 0.037790 GCTTCTGTTGGAGACGCTCT 60.038 55.000 6.78 0.00 41.67 4.09
253 254 1.291588 CGCTCTCAGCCTCACAACT 59.708 57.895 0.00 0.00 38.18 3.16
254 255 0.320247 CGCTCTCAGCCTCACAACTT 60.320 55.000 0.00 0.00 38.18 2.66
255 256 1.155042 GCTCTCAGCCTCACAACTTG 58.845 55.000 0.00 0.00 34.48 3.16
256 257 1.542108 GCTCTCAGCCTCACAACTTGT 60.542 52.381 0.00 0.00 34.48 3.16
259 260 3.620488 TCTCAGCCTCACAACTTGTTTT 58.380 40.909 0.00 0.00 0.00 2.43
270 271 5.659440 ACAACTTGTTTTGTGTGGAGAAT 57.341 34.783 0.00 0.00 38.31 2.40
271 272 6.036577 ACAACTTGTTTTGTGTGGAGAATT 57.963 33.333 0.00 0.00 38.31 2.17
278 279 2.455674 TGTGTGGAGAATTGAGACGG 57.544 50.000 0.00 0.00 0.00 4.79
282 283 0.690192 TGGAGAATTGAGACGGGCAA 59.310 50.000 0.00 0.00 0.00 4.52
284 285 1.066143 GGAGAATTGAGACGGGCAAGA 60.066 52.381 0.00 0.00 0.00 3.02
286 287 2.675348 GAGAATTGAGACGGGCAAGAAG 59.325 50.000 0.00 0.00 0.00 2.85
287 288 2.303022 AGAATTGAGACGGGCAAGAAGA 59.697 45.455 0.00 0.00 0.00 2.87
289 290 2.169832 TTGAGACGGGCAAGAAGAAG 57.830 50.000 0.00 0.00 0.00 2.85
290 291 1.338107 TGAGACGGGCAAGAAGAAGA 58.662 50.000 0.00 0.00 0.00 2.87
292 293 2.289072 TGAGACGGGCAAGAAGAAGAAG 60.289 50.000 0.00 0.00 0.00 2.85
294 295 2.368875 AGACGGGCAAGAAGAAGAAGAA 59.631 45.455 0.00 0.00 0.00 2.52
295 296 2.739379 GACGGGCAAGAAGAAGAAGAAG 59.261 50.000 0.00 0.00 0.00 2.85
296 297 2.368875 ACGGGCAAGAAGAAGAAGAAGA 59.631 45.455 0.00 0.00 0.00 2.87
297 298 3.181454 ACGGGCAAGAAGAAGAAGAAGAA 60.181 43.478 0.00 0.00 0.00 2.52
299 300 4.646572 GGGCAAGAAGAAGAAGAAGAAGA 58.353 43.478 0.00 0.00 0.00 2.87
300 301 5.066593 GGGCAAGAAGAAGAAGAAGAAGAA 58.933 41.667 0.00 0.00 0.00 2.52
379 383 1.060308 CACGTTTAGGGCGAATGCG 59.940 57.895 0.00 0.00 44.10 4.73
408 412 3.018428 GCACACTTGCGCAACGTG 61.018 61.111 32.36 32.36 39.50 4.49
480 487 1.814169 CGGAGGAACTAAAGGCGCC 60.814 63.158 21.89 21.89 41.55 6.53
510 518 2.286294 CCACGAATCATTGCTGCTCTAC 59.714 50.000 0.00 0.00 0.00 2.59
533 541 0.871057 GCTTGGAACTGAGCACTCAC 59.129 55.000 0.00 0.00 37.93 3.51
572 580 0.824109 TAACCACCTCTCATCTGCCG 59.176 55.000 0.00 0.00 0.00 5.69
573 581 1.194781 AACCACCTCTCATCTGCCGT 61.195 55.000 0.00 0.00 0.00 5.68
574 582 1.194781 ACCACCTCTCATCTGCCGTT 61.195 55.000 0.00 0.00 0.00 4.44
575 583 0.460987 CCACCTCTCATCTGCCGTTC 60.461 60.000 0.00 0.00 0.00 3.95
576 584 0.460987 CACCTCTCATCTGCCGTTCC 60.461 60.000 0.00 0.00 0.00 3.62
577 585 0.616111 ACCTCTCATCTGCCGTTCCT 60.616 55.000 0.00 0.00 0.00 3.36
616 624 4.737855 TCCACCACTGCTAATTACTCTC 57.262 45.455 0.00 0.00 0.00 3.20
671 683 4.353383 AAAAGACCAAGTACTCTGACCC 57.647 45.455 0.00 0.00 0.00 4.46
673 685 2.249139 AGACCAAGTACTCTGACCCAC 58.751 52.381 0.00 0.00 0.00 4.61
693 767 0.717784 CATACACACGCTCTGCAGTG 59.282 55.000 14.67 12.95 39.17 3.66
862 958 4.684757 GCCATTTCTTCTCCCTTCTCCTAC 60.685 50.000 0.00 0.00 0.00 3.18
907 1007 0.975040 CTCACACCTCCTCCCCTGAG 60.975 65.000 0.00 0.00 38.42 3.35
908 1008 1.229336 CACACCTCCTCCCCTGAGT 60.229 63.158 0.00 0.00 36.86 3.41
909 1009 1.079438 ACACCTCCTCCCCTGAGTC 59.921 63.158 0.00 0.00 36.86 3.36
914 1014 0.686112 CTCCTCCCCTGAGTCCTGAC 60.686 65.000 0.00 0.00 36.86 3.51
1321 1429 2.813908 CGGAGTACAAGGGCGTGC 60.814 66.667 0.00 0.00 0.00 5.34
1389 1497 4.436998 CAGTCCGTCTGGTCGCCC 62.437 72.222 0.00 0.00 40.23 6.13
1392 1500 2.753043 TCCGTCTGGTCGCCCTAC 60.753 66.667 0.00 0.00 36.30 3.18
1395 1503 2.772691 CGTCTGGTCGCCCTACCTC 61.773 68.421 0.00 0.00 40.44 3.85
1396 1504 2.043248 TCTGGTCGCCCTACCTCC 60.043 66.667 0.00 0.00 40.44 4.30
1702 1829 2.111878 CCTCCACCGATCCATGCC 59.888 66.667 0.00 0.00 0.00 4.40
1822 1994 9.973450 TCGATTGGTTAAAGAAATGAATGAAAA 57.027 25.926 0.00 0.00 0.00 2.29
1834 2006 9.447157 AGAAATGAATGAAAACAAAAGGTTGAA 57.553 25.926 0.00 0.00 40.35 2.69
1835 2007 9.706846 GAAATGAATGAAAACAAAAGGTTGAAG 57.293 29.630 0.00 0.00 40.35 3.02
1836 2008 6.660887 TGAATGAAAACAAAAGGTTGAAGC 57.339 33.333 0.00 0.00 40.35 3.86
1837 2009 6.405538 TGAATGAAAACAAAAGGTTGAAGCT 58.594 32.000 0.00 0.00 40.35 3.74
1839 2011 6.908870 ATGAAAACAAAAGGTTGAAGCTTC 57.091 33.333 19.89 19.89 40.35 3.86
1840 2012 4.862018 TGAAAACAAAAGGTTGAAGCTTCG 59.138 37.500 21.11 7.43 40.35 3.79
1842 2014 4.918810 AACAAAAGGTTGAAGCTTCGAT 57.081 36.364 19.35 1.68 38.60 3.59
1843 2015 6.385649 AAACAAAAGGTTGAAGCTTCGATA 57.614 33.333 19.35 5.70 40.35 2.92
1950 2138 1.493772 TGGAGTAAACGTGAAGTGCG 58.506 50.000 0.00 0.00 0.00 5.34
1957 2149 3.299340 AAACGTGAAGTGCGTATCTCT 57.701 42.857 0.00 0.00 42.10 3.10
1989 2181 8.980143 TTCCGGACAAAATTGATCTATTTTTC 57.020 30.769 20.60 19.06 35.98 2.29
1991 2183 6.472163 CCGGACAAAATTGATCTATTTTTCGG 59.528 38.462 26.41 26.41 35.98 4.30
1994 2186 8.197439 GGACAAAATTGATCTATTTTTCGGGAT 58.803 33.333 20.60 6.82 35.98 3.85
2006 2198 9.893634 TCTATTTTTCGGGATATTAAGTGAACA 57.106 29.630 0.00 0.00 0.00 3.18
2008 2200 7.989416 TTTTTCGGGATATTAAGTGAACAGT 57.011 32.000 0.00 0.00 0.00 3.55
2011 2203 5.657474 TCGGGATATTAAGTGAACAGTGTC 58.343 41.667 0.00 0.00 0.00 3.67
2012 2204 4.503007 CGGGATATTAAGTGAACAGTGTCG 59.497 45.833 0.00 0.00 0.00 4.35
2013 2205 4.270325 GGGATATTAAGTGAACAGTGTCGC 59.730 45.833 0.00 0.00 0.00 5.19
2015 2207 5.232414 GGATATTAAGTGAACAGTGTCGCTC 59.768 44.000 0.00 0.00 37.38 5.03
2016 2208 3.446310 TTAAGTGAACAGTGTCGCTCA 57.554 42.857 0.00 0.00 37.38 4.26
2017 2209 2.309528 AAGTGAACAGTGTCGCTCAA 57.690 45.000 0.00 0.00 37.38 3.02
2021 2225 0.787183 GAACAGTGTCGCTCAAGCTC 59.213 55.000 0.00 0.00 39.32 4.09
2033 2237 3.384668 GCTCAAGCTCTCGTGCATAATA 58.615 45.455 0.00 0.00 38.21 0.98
2034 2238 3.804325 GCTCAAGCTCTCGTGCATAATAA 59.196 43.478 0.00 0.00 38.21 1.40
2035 2239 4.084641 GCTCAAGCTCTCGTGCATAATAAG 60.085 45.833 0.00 0.00 38.21 1.73
2036 2240 4.371786 TCAAGCTCTCGTGCATAATAAGG 58.628 43.478 0.00 0.00 34.99 2.69
2037 2241 2.760374 AGCTCTCGTGCATAATAAGGC 58.240 47.619 0.00 0.00 34.99 4.35
2038 2242 2.366916 AGCTCTCGTGCATAATAAGGCT 59.633 45.455 0.00 0.00 32.35 4.58
2040 2244 4.039245 AGCTCTCGTGCATAATAAGGCTTA 59.961 41.667 9.79 9.79 32.35 3.09
2041 2245 4.150804 GCTCTCGTGCATAATAAGGCTTAC 59.849 45.833 9.55 0.00 32.35 2.34
2042 2246 5.531122 TCTCGTGCATAATAAGGCTTACT 57.469 39.130 9.55 0.28 32.35 2.24
2043 2247 5.914033 TCTCGTGCATAATAAGGCTTACTT 58.086 37.500 9.55 7.93 43.28 2.24
2045 2249 7.145985 TCTCGTGCATAATAAGGCTTACTTAG 58.854 38.462 9.55 1.93 44.43 2.18
2046 2250 6.220930 TCGTGCATAATAAGGCTTACTTAGG 58.779 40.000 9.55 11.55 44.43 2.69
2048 2252 6.874134 CGTGCATAATAAGGCTTACTTAGGAT 59.126 38.462 9.55 0.00 44.43 3.24
2050 2254 9.067986 GTGCATAATAAGGCTTACTTAGGATTT 57.932 33.333 9.55 0.01 44.43 2.17
2051 2255 9.640952 TGCATAATAAGGCTTACTTAGGATTTT 57.359 29.630 9.55 0.00 44.43 1.82
2055 2259 8.895141 AATAAGGCTTACTTAGGATTTTTGGT 57.105 30.769 9.55 0.00 44.43 3.67
2056 2260 8.895141 ATAAGGCTTACTTAGGATTTTTGGTT 57.105 30.769 9.55 0.00 44.43 3.67
2057 2261 6.835819 AGGCTTACTTAGGATTTTTGGTTC 57.164 37.500 0.00 0.00 0.00 3.62
2058 2262 6.311735 AGGCTTACTTAGGATTTTTGGTTCA 58.688 36.000 0.00 0.00 0.00 3.18
2059 2263 6.434340 AGGCTTACTTAGGATTTTTGGTTCAG 59.566 38.462 0.00 0.00 0.00 3.02
2082 2302 4.957759 AACAGTTAACACGCTTCACTTT 57.042 36.364 8.61 0.00 0.00 2.66
2121 2342 4.204370 GCGTGAAGTTCCTTTTCTTTTTCG 59.796 41.667 0.00 0.00 0.00 3.46
2129 2352 7.418408 AGTTCCTTTTCTTTTTCGTCTGATTC 58.582 34.615 0.00 0.00 0.00 2.52
2160 2383 0.812811 TCGTGGTCGAGAGATACGGG 60.813 60.000 0.00 0.00 46.43 5.28
2177 2400 1.134670 CGGGCTTTTCTCTCGGATCTT 60.135 52.381 0.00 0.00 0.00 2.40
2178 2401 2.284190 GGGCTTTTCTCTCGGATCTTG 58.716 52.381 0.00 0.00 0.00 3.02
2179 2402 1.668237 GGCTTTTCTCTCGGATCTTGC 59.332 52.381 0.00 0.00 0.00 4.01
2200 2423 4.391405 CCTTTTGGCTGAAAGTGTTTCT 57.609 40.909 11.20 0.00 40.32 2.52
2210 2433 3.632145 TGAAAGTGTTTCTTTGGAGAGCC 59.368 43.478 1.39 0.00 45.15 4.70
2215 2438 3.569701 GTGTTTCTTTGGAGAGCCATCAA 59.430 43.478 0.00 0.00 45.46 2.57
2216 2439 3.822735 TGTTTCTTTGGAGAGCCATCAAG 59.177 43.478 0.00 0.00 45.46 3.02
2218 2441 1.988107 TCTTTGGAGAGCCATCAAGGT 59.012 47.619 0.00 0.00 45.46 3.50
2219 2442 2.376518 TCTTTGGAGAGCCATCAAGGTT 59.623 45.455 0.00 0.00 45.46 3.50
2220 2443 3.587061 TCTTTGGAGAGCCATCAAGGTTA 59.413 43.478 0.00 0.00 45.46 2.85
2221 2444 3.634397 TTGGAGAGCCATCAAGGTTAG 57.366 47.619 0.00 0.00 45.46 2.34
2222 2445 1.210478 TGGAGAGCCATCAAGGTTAGC 59.790 52.381 0.00 0.00 39.92 3.09
2223 2446 1.488393 GGAGAGCCATCAAGGTTAGCT 59.512 52.381 0.00 0.00 40.61 3.32
2240 2463 0.665972 GCTAGCTAGCTGATCACGCC 60.666 60.000 33.71 5.30 45.62 5.68
2243 2466 3.120105 CTAGCTGATCACGCCCGA 58.880 61.111 11.89 0.82 0.00 5.14
2338 2628 2.617774 AGTTAGCAGCTAGGTACGTAGC 59.382 50.000 30.98 30.98 45.06 3.58
2464 2778 3.685214 CTCGGTCGACCTCTTGCCG 62.685 68.421 30.92 16.88 43.32 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.533657 AGTCCATCTGATCAAAATAAAAATGCA 58.466 29.630 0.00 0.00 0.00 3.96
1 2 8.937634 AGTCCATCTGATCAAAATAAAAATGC 57.062 30.769 0.00 0.00 0.00 3.56
13 14 9.685276 ACATTTACAAATAAGTCCATCTGATCA 57.315 29.630 0.00 0.00 0.00 2.92
20 21 9.762381 TCCCTAAACATTTACAAATAAGTCCAT 57.238 29.630 0.00 0.00 0.00 3.41
21 22 9.016438 GTCCCTAAACATTTACAAATAAGTCCA 57.984 33.333 0.00 0.00 0.00 4.02
22 23 8.464404 GGTCCCTAAACATTTACAAATAAGTCC 58.536 37.037 0.00 0.00 0.00 3.85
23 24 9.239551 AGGTCCCTAAACATTTACAAATAAGTC 57.760 33.333 0.00 0.00 0.00 3.01
24 25 9.020731 CAGGTCCCTAAACATTTACAAATAAGT 57.979 33.333 0.00 0.00 0.00 2.24
25 26 9.020731 ACAGGTCCCTAAACATTTACAAATAAG 57.979 33.333 0.00 0.00 0.00 1.73
26 27 8.943594 ACAGGTCCCTAAACATTTACAAATAA 57.056 30.769 0.00 0.00 0.00 1.40
27 28 8.943594 AACAGGTCCCTAAACATTTACAAATA 57.056 30.769 0.00 0.00 0.00 1.40
28 29 7.849322 AACAGGTCCCTAAACATTTACAAAT 57.151 32.000 0.00 0.00 0.00 2.32
29 30 7.493367 CAAACAGGTCCCTAAACATTTACAAA 58.507 34.615 0.00 0.00 0.00 2.83
30 31 6.461788 GCAAACAGGTCCCTAAACATTTACAA 60.462 38.462 0.00 0.00 0.00 2.41
31 32 5.010213 GCAAACAGGTCCCTAAACATTTACA 59.990 40.000 0.00 0.00 0.00 2.41
32 33 5.243060 AGCAAACAGGTCCCTAAACATTTAC 59.757 40.000 0.00 0.00 0.00 2.01
33 34 5.242838 CAGCAAACAGGTCCCTAAACATTTA 59.757 40.000 0.00 0.00 0.00 1.40
34 35 4.039124 CAGCAAACAGGTCCCTAAACATTT 59.961 41.667 0.00 0.00 0.00 2.32
35 36 3.573967 CAGCAAACAGGTCCCTAAACATT 59.426 43.478 0.00 0.00 0.00 2.71
36 37 3.157087 CAGCAAACAGGTCCCTAAACAT 58.843 45.455 0.00 0.00 0.00 2.71
37 38 2.092103 ACAGCAAACAGGTCCCTAAACA 60.092 45.455 0.00 0.00 0.00 2.83
38 39 2.583143 ACAGCAAACAGGTCCCTAAAC 58.417 47.619 0.00 0.00 0.00 2.01
39 40 3.649023 TCTACAGCAAACAGGTCCCTAAA 59.351 43.478 0.00 0.00 0.00 1.85
40 41 3.244582 TCTACAGCAAACAGGTCCCTAA 58.755 45.455 0.00 0.00 0.00 2.69
41 42 2.897350 TCTACAGCAAACAGGTCCCTA 58.103 47.619 0.00 0.00 0.00 3.53
42 43 1.729586 TCTACAGCAAACAGGTCCCT 58.270 50.000 0.00 0.00 0.00 4.20
43 44 2.789409 ATCTACAGCAAACAGGTCCC 57.211 50.000 0.00 0.00 0.00 4.46
44 45 7.499232 ACAAATATATCTACAGCAAACAGGTCC 59.501 37.037 0.00 0.00 0.00 4.46
45 46 8.338259 CACAAATATATCTACAGCAAACAGGTC 58.662 37.037 0.00 0.00 0.00 3.85
46 47 7.283127 CCACAAATATATCTACAGCAAACAGGT 59.717 37.037 0.00 0.00 0.00 4.00
47 48 7.642669 CCACAAATATATCTACAGCAAACAGG 58.357 38.462 0.00 0.00 0.00 4.00
48 49 7.134815 GCCACAAATATATCTACAGCAAACAG 58.865 38.462 0.00 0.00 0.00 3.16
49 50 6.238347 CGCCACAAATATATCTACAGCAAACA 60.238 38.462 0.00 0.00 0.00 2.83
50 51 6.136071 CGCCACAAATATATCTACAGCAAAC 58.864 40.000 0.00 0.00 0.00 2.93
51 52 5.277779 GCGCCACAAATATATCTACAGCAAA 60.278 40.000 0.00 0.00 0.00 3.68
52 53 4.213270 GCGCCACAAATATATCTACAGCAA 59.787 41.667 0.00 0.00 0.00 3.91
53 54 3.745975 GCGCCACAAATATATCTACAGCA 59.254 43.478 0.00 0.00 0.00 4.41
54 55 3.997021 AGCGCCACAAATATATCTACAGC 59.003 43.478 2.29 0.00 0.00 4.40
55 56 6.545504 AAAGCGCCACAAATATATCTACAG 57.454 37.500 2.29 0.00 0.00 2.74
56 57 8.615878 AATAAAGCGCCACAAATATATCTACA 57.384 30.769 2.29 0.00 0.00 2.74
57 58 9.893305 AAAATAAAGCGCCACAAATATATCTAC 57.107 29.630 2.29 0.00 0.00 2.59
81 82 3.002246 CAGTTCAGCAGACGCACTAAAAA 59.998 43.478 0.00 0.00 42.27 1.94
82 83 2.543848 CAGTTCAGCAGACGCACTAAAA 59.456 45.455 0.00 0.00 42.27 1.52
83 84 2.135139 CAGTTCAGCAGACGCACTAAA 58.865 47.619 0.00 0.00 42.27 1.85
84 85 1.068588 ACAGTTCAGCAGACGCACTAA 59.931 47.619 0.00 0.00 42.27 2.24
85 86 0.673985 ACAGTTCAGCAGACGCACTA 59.326 50.000 0.00 0.00 42.27 2.74
86 87 0.179073 AACAGTTCAGCAGACGCACT 60.179 50.000 0.00 0.00 42.27 4.40
87 88 0.041839 CAACAGTTCAGCAGACGCAC 60.042 55.000 0.00 0.00 42.27 5.34
88 89 1.775039 GCAACAGTTCAGCAGACGCA 61.775 55.000 0.00 0.00 42.27 5.24
89 90 1.082496 GCAACAGTTCAGCAGACGC 60.082 57.895 0.00 0.00 38.99 5.19
90 91 1.202568 CGCAACAGTTCAGCAGACG 59.797 57.895 0.00 0.00 0.00 4.18
91 92 1.082496 GCGCAACAGTTCAGCAGAC 60.082 57.895 0.30 0.00 0.00 3.51
92 93 2.597713 CGCGCAACAGTTCAGCAGA 61.598 57.895 8.75 0.00 0.00 4.26
93 94 2.127496 CGCGCAACAGTTCAGCAG 60.127 61.111 8.75 0.73 0.00 4.24
94 95 4.312231 GCGCGCAACAGTTCAGCA 62.312 61.111 29.10 0.00 0.00 4.41
95 96 4.017877 AGCGCGCAACAGTTCAGC 62.018 61.111 35.10 0.00 0.00 4.26
96 97 2.127496 CAGCGCGCAACAGTTCAG 60.127 61.111 35.10 6.98 0.00 3.02
97 98 2.881266 GACAGCGCGCAACAGTTCA 61.881 57.895 35.10 0.00 0.00 3.18
98 99 2.127609 GACAGCGCGCAACAGTTC 60.128 61.111 35.10 15.19 0.00 3.01
99 100 3.649986 GGACAGCGCGCAACAGTT 61.650 61.111 35.10 8.46 0.00 3.16
100 101 4.609018 AGGACAGCGCGCAACAGT 62.609 61.111 35.10 24.60 0.00 3.55
101 102 3.782244 GAGGACAGCGCGCAACAG 61.782 66.667 35.10 21.44 0.00 3.16
102 103 4.299547 AGAGGACAGCGCGCAACA 62.300 61.111 35.10 0.00 0.00 3.33
103 104 3.782244 CAGAGGACAGCGCGCAAC 61.782 66.667 35.10 22.30 0.00 4.17
109 110 2.619840 ATAGCGTGCAGAGGACAGCG 62.620 60.000 0.00 0.00 0.00 5.18
110 111 0.385751 TATAGCGTGCAGAGGACAGC 59.614 55.000 0.00 0.00 0.00 4.40
111 112 3.377346 AATATAGCGTGCAGAGGACAG 57.623 47.619 0.00 0.00 0.00 3.51
112 113 3.819564 AAATATAGCGTGCAGAGGACA 57.180 42.857 0.00 0.00 0.00 4.02
113 114 4.332819 ACAAAAATATAGCGTGCAGAGGAC 59.667 41.667 0.00 0.00 0.00 3.85
114 115 4.332543 CACAAAAATATAGCGTGCAGAGGA 59.667 41.667 0.00 0.00 0.00 3.71
115 116 4.591202 CACAAAAATATAGCGTGCAGAGG 58.409 43.478 0.00 0.00 0.00 3.69
121 122 4.591202 CAGAGGCACAAAAATATAGCGTG 58.409 43.478 0.00 0.00 0.00 5.34
122 123 3.065371 GCAGAGGCACAAAAATATAGCGT 59.935 43.478 0.00 0.00 40.72 5.07
123 124 3.313526 AGCAGAGGCACAAAAATATAGCG 59.686 43.478 0.00 0.00 44.61 4.26
124 125 4.498682 CCAGCAGAGGCACAAAAATATAGC 60.499 45.833 0.00 0.00 44.61 2.97
125 126 4.883585 TCCAGCAGAGGCACAAAAATATAG 59.116 41.667 0.00 0.00 44.61 1.31
126 127 4.640201 GTCCAGCAGAGGCACAAAAATATA 59.360 41.667 0.00 0.00 44.61 0.86
127 128 3.445096 GTCCAGCAGAGGCACAAAAATAT 59.555 43.478 0.00 0.00 44.61 1.28
128 129 2.819608 GTCCAGCAGAGGCACAAAAATA 59.180 45.455 0.00 0.00 44.61 1.40
129 130 1.615392 GTCCAGCAGAGGCACAAAAAT 59.385 47.619 0.00 0.00 44.61 1.82
130 131 1.032014 GTCCAGCAGAGGCACAAAAA 58.968 50.000 0.00 0.00 44.61 1.94
131 132 0.183492 AGTCCAGCAGAGGCACAAAA 59.817 50.000 0.00 0.00 44.61 2.44
132 133 0.535780 CAGTCCAGCAGAGGCACAAA 60.536 55.000 0.00 0.00 44.61 2.83
133 134 1.071987 CAGTCCAGCAGAGGCACAA 59.928 57.895 0.00 0.00 44.61 3.33
134 135 1.410050 TTCAGTCCAGCAGAGGCACA 61.410 55.000 0.00 0.00 44.61 4.57
135 136 0.035630 ATTCAGTCCAGCAGAGGCAC 60.036 55.000 0.00 0.00 44.61 5.01
136 137 0.251354 GATTCAGTCCAGCAGAGGCA 59.749 55.000 0.00 0.00 44.61 4.75
137 138 0.809241 CGATTCAGTCCAGCAGAGGC 60.809 60.000 0.00 0.00 41.61 4.70
138 139 0.179089 CCGATTCAGTCCAGCAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
139 140 0.809241 GCCGATTCAGTCCAGCAGAG 60.809 60.000 0.00 0.00 0.00 3.35
140 141 1.219124 GCCGATTCAGTCCAGCAGA 59.781 57.895 0.00 0.00 0.00 4.26
141 142 1.817099 GGCCGATTCAGTCCAGCAG 60.817 63.158 0.00 0.00 0.00 4.24
142 143 2.268920 GGCCGATTCAGTCCAGCA 59.731 61.111 0.00 0.00 0.00 4.41
143 144 2.109126 GTGGCCGATTCAGTCCAGC 61.109 63.158 0.00 0.00 0.00 4.85
144 145 1.811266 CGTGGCCGATTCAGTCCAG 60.811 63.158 0.00 0.00 35.63 3.86
145 146 2.264480 CGTGGCCGATTCAGTCCA 59.736 61.111 0.00 0.00 35.63 4.02
146 147 2.511600 CCGTGGCCGATTCAGTCC 60.512 66.667 0.00 0.00 35.63 3.85
147 148 3.195698 GCCGTGGCCGATTCAGTC 61.196 66.667 0.00 0.00 35.63 3.51
156 157 2.207788 AATTTTAGCACGCCGTGGCC 62.208 55.000 20.07 2.78 37.98 5.36
157 158 0.448593 TAATTTTAGCACGCCGTGGC 59.551 50.000 20.07 11.26 33.64 5.01
158 159 1.735571 AGTAATTTTAGCACGCCGTGG 59.264 47.619 20.07 0.57 33.64 4.94
159 160 4.587211 TTAGTAATTTTAGCACGCCGTG 57.413 40.909 13.95 13.95 36.51 4.94
160 161 5.610235 TTTTAGTAATTTTAGCACGCCGT 57.390 34.783 0.00 0.00 0.00 5.68
161 162 5.454232 CCATTTTAGTAATTTTAGCACGCCG 59.546 40.000 0.00 0.00 0.00 6.46
162 163 5.231357 GCCATTTTAGTAATTTTAGCACGCC 59.769 40.000 0.00 0.00 0.00 5.68
163 164 5.052633 CGCCATTTTAGTAATTTTAGCACGC 60.053 40.000 0.00 0.00 0.00 5.34
164 165 5.052633 GCGCCATTTTAGTAATTTTAGCACG 60.053 40.000 0.00 0.00 0.00 5.34
165 166 6.020678 CAGCGCCATTTTAGTAATTTTAGCAC 60.021 38.462 2.29 0.00 0.00 4.40
166 167 6.033341 CAGCGCCATTTTAGTAATTTTAGCA 58.967 36.000 2.29 0.00 0.00 3.49
167 168 6.033966 ACAGCGCCATTTTAGTAATTTTAGC 58.966 36.000 2.29 0.00 0.00 3.09
168 169 9.562583 TTTACAGCGCCATTTTAGTAATTTTAG 57.437 29.630 2.29 0.00 0.00 1.85
169 170 9.909644 TTTTACAGCGCCATTTTAGTAATTTTA 57.090 25.926 2.29 0.00 0.00 1.52
170 171 8.819643 TTTTACAGCGCCATTTTAGTAATTTT 57.180 26.923 2.29 0.00 0.00 1.82
171 172 8.996024 ATTTTACAGCGCCATTTTAGTAATTT 57.004 26.923 2.29 0.00 0.00 1.82
172 173 8.996024 AATTTTACAGCGCCATTTTAGTAATT 57.004 26.923 2.29 0.00 0.00 1.40
176 177 8.996024 AAATAATTTTACAGCGCCATTTTAGT 57.004 26.923 2.29 0.00 0.00 2.24
179 180 8.387354 GCTAAAATAATTTTACAGCGCCATTTT 58.613 29.630 2.29 5.36 34.19 1.82
180 181 7.253950 CGCTAAAATAATTTTACAGCGCCATTT 60.254 33.333 16.97 0.00 43.45 2.32
181 182 6.198216 CGCTAAAATAATTTTACAGCGCCATT 59.802 34.615 16.97 0.00 43.45 3.16
182 183 5.685511 CGCTAAAATAATTTTACAGCGCCAT 59.314 36.000 16.97 0.00 43.45 4.40
183 184 5.031578 CGCTAAAATAATTTTACAGCGCCA 58.968 37.500 16.97 0.00 43.45 5.69
184 185 5.540282 CGCTAAAATAATTTTACAGCGCC 57.460 39.130 16.97 0.00 43.45 6.53
187 188 4.085772 GGCGCGCTAAAATAATTTTACAGC 60.086 41.667 32.29 2.98 34.19 4.40
188 189 4.144051 CGGCGCGCTAAAATAATTTTACAG 59.856 41.667 32.29 1.75 34.19 2.74
189 190 4.029704 CGGCGCGCTAAAATAATTTTACA 58.970 39.130 32.29 0.00 34.19 2.41
190 191 4.030366 ACGGCGCGCTAAAATAATTTTAC 58.970 39.130 32.29 7.64 34.19 2.01
191 192 4.275838 ACGGCGCGCTAAAATAATTTTA 57.724 36.364 32.29 0.00 34.19 1.52
192 193 3.139603 ACGGCGCGCTAAAATAATTTT 57.860 38.095 32.29 0.00 36.67 1.82
193 194 2.836479 ACGGCGCGCTAAAATAATTT 57.164 40.000 32.29 0.00 0.00 1.82
194 195 2.836479 AACGGCGCGCTAAAATAATT 57.164 40.000 32.29 10.56 0.00 1.40
195 196 2.159490 ACAAACGGCGCGCTAAAATAAT 60.159 40.909 32.29 7.26 0.00 1.28
196 197 1.197264 ACAAACGGCGCGCTAAAATAA 59.803 42.857 32.29 0.00 0.00 1.40
197 198 0.797542 ACAAACGGCGCGCTAAAATA 59.202 45.000 32.29 0.00 0.00 1.40
198 199 0.039888 AACAAACGGCGCGCTAAAAT 60.040 45.000 32.29 11.09 0.00 1.82
199 200 0.248539 AAACAAACGGCGCGCTAAAA 60.249 45.000 32.29 0.00 0.00 1.52
200 201 0.930742 CAAACAAACGGCGCGCTAAA 60.931 50.000 32.29 0.00 0.00 1.85
201 202 1.369448 CAAACAAACGGCGCGCTAA 60.369 52.632 32.29 0.00 0.00 3.09
202 203 2.249896 CAAACAAACGGCGCGCTA 59.750 55.556 32.29 0.00 0.00 4.26
203 204 4.622456 CCAAACAAACGGCGCGCT 62.622 61.111 32.29 9.55 0.00 5.92
208 209 0.597377 CAGAAGCCCAAACAAACGGC 60.597 55.000 0.00 0.00 43.35 5.68
209 210 0.744281 ACAGAAGCCCAAACAAACGG 59.256 50.000 0.00 0.00 0.00 4.44
210 211 2.192624 CAACAGAAGCCCAAACAAACG 58.807 47.619 0.00 0.00 0.00 3.60
211 212 2.167487 TCCAACAGAAGCCCAAACAAAC 59.833 45.455 0.00 0.00 0.00 2.93
212 213 2.430332 CTCCAACAGAAGCCCAAACAAA 59.570 45.455 0.00 0.00 0.00 2.83
213 214 2.031120 CTCCAACAGAAGCCCAAACAA 58.969 47.619 0.00 0.00 0.00 2.83
214 215 1.214175 TCTCCAACAGAAGCCCAAACA 59.786 47.619 0.00 0.00 0.00 2.83
215 216 1.609072 GTCTCCAACAGAAGCCCAAAC 59.391 52.381 0.00 0.00 30.72 2.93
216 217 1.813862 CGTCTCCAACAGAAGCCCAAA 60.814 52.381 0.00 0.00 30.72 3.28
217 218 0.250295 CGTCTCCAACAGAAGCCCAA 60.250 55.000 0.00 0.00 30.72 4.12
218 219 1.371183 CGTCTCCAACAGAAGCCCA 59.629 57.895 0.00 0.00 30.72 5.36
219 220 4.285851 CGTCTCCAACAGAAGCCC 57.714 61.111 0.00 0.00 30.72 5.19
222 223 1.270826 TGAGAGCGTCTCCAACAGAAG 59.729 52.381 11.01 0.00 42.73 2.85
223 224 1.270826 CTGAGAGCGTCTCCAACAGAA 59.729 52.381 11.01 0.00 42.73 3.02
224 225 0.884514 CTGAGAGCGTCTCCAACAGA 59.115 55.000 11.01 0.00 42.73 3.41
225 226 0.735632 GCTGAGAGCGTCTCCAACAG 60.736 60.000 11.01 13.24 42.73 3.16
226 227 1.290324 GCTGAGAGCGTCTCCAACA 59.710 57.895 11.01 5.99 42.73 3.33
227 228 1.446966 GGCTGAGAGCGTCTCCAAC 60.447 63.158 11.01 3.05 42.73 3.77
228 229 1.607756 AGGCTGAGAGCGTCTCCAA 60.608 57.895 11.01 0.00 42.73 3.53
229 230 2.036414 AGGCTGAGAGCGTCTCCA 59.964 61.111 11.01 5.63 42.73 3.86
234 235 1.005630 GTTGTGAGGCTGAGAGCGT 60.006 57.895 0.00 0.00 43.62 5.07
235 236 0.320247 AAGTTGTGAGGCTGAGAGCG 60.320 55.000 0.00 0.00 43.62 5.03
236 237 1.155042 CAAGTTGTGAGGCTGAGAGC 58.845 55.000 0.00 0.00 41.46 4.09
237 238 2.540265 ACAAGTTGTGAGGCTGAGAG 57.460 50.000 7.96 0.00 0.00 3.20
238 239 3.281727 AAACAAGTTGTGAGGCTGAGA 57.718 42.857 9.79 0.00 0.00 3.27
239 240 3.129287 ACAAAACAAGTTGTGAGGCTGAG 59.871 43.478 9.79 0.00 40.22 3.35
240 241 3.088532 ACAAAACAAGTTGTGAGGCTGA 58.911 40.909 9.79 0.00 40.22 4.26
253 254 5.448496 CGTCTCAATTCTCCACACAAAACAA 60.448 40.000 0.00 0.00 0.00 2.83
254 255 4.035091 CGTCTCAATTCTCCACACAAAACA 59.965 41.667 0.00 0.00 0.00 2.83
255 256 4.527564 CGTCTCAATTCTCCACACAAAAC 58.472 43.478 0.00 0.00 0.00 2.43
256 257 3.563808 CCGTCTCAATTCTCCACACAAAA 59.436 43.478 0.00 0.00 0.00 2.44
259 260 1.001974 CCCGTCTCAATTCTCCACACA 59.998 52.381 0.00 0.00 0.00 3.72
264 265 1.066143 TCTTGCCCGTCTCAATTCTCC 60.066 52.381 0.00 0.00 0.00 3.71
269 270 2.303022 TCTTCTTCTTGCCCGTCTCAAT 59.697 45.455 0.00 0.00 0.00 2.57
270 271 1.691976 TCTTCTTCTTGCCCGTCTCAA 59.308 47.619 0.00 0.00 0.00 3.02
271 272 1.338107 TCTTCTTCTTGCCCGTCTCA 58.662 50.000 0.00 0.00 0.00 3.27
278 279 6.816134 ATTCTTCTTCTTCTTCTTCTTGCC 57.184 37.500 0.00 0.00 0.00 4.52
294 295 7.763528 GCCATGATTGATCGATACTATTCTTCT 59.236 37.037 0.00 0.00 0.00 2.85
295 296 7.547019 TGCCATGATTGATCGATACTATTCTTC 59.453 37.037 0.00 0.00 0.00 2.87
296 297 7.389232 TGCCATGATTGATCGATACTATTCTT 58.611 34.615 0.00 0.00 0.00 2.52
297 298 6.939622 TGCCATGATTGATCGATACTATTCT 58.060 36.000 0.00 0.00 0.00 2.40
299 300 6.541278 CCATGCCATGATTGATCGATACTATT 59.459 38.462 6.18 0.00 0.00 1.73
300 301 6.053650 CCATGCCATGATTGATCGATACTAT 58.946 40.000 6.18 0.00 0.00 2.12
491 499 2.169352 AGGTAGAGCAGCAATGATTCGT 59.831 45.455 0.00 0.00 0.00 3.85
510 518 1.277557 AGTGCTCAGTTCCAAGCTAGG 59.722 52.381 0.00 0.00 39.31 3.02
572 580 2.541556 CGTAAGCTAGGCTGAAGGAAC 58.458 52.381 0.00 0.00 39.62 3.62
573 581 1.480954 CCGTAAGCTAGGCTGAAGGAA 59.519 52.381 0.00 0.00 40.42 3.36
574 582 1.112113 CCGTAAGCTAGGCTGAAGGA 58.888 55.000 0.00 0.00 40.42 3.36
575 583 0.824759 ACCGTAAGCTAGGCTGAAGG 59.175 55.000 7.20 7.20 43.02 3.46
576 584 2.541556 GAACCGTAAGCTAGGCTGAAG 58.458 52.381 0.00 0.00 39.62 3.02
577 585 1.206371 GGAACCGTAAGCTAGGCTGAA 59.794 52.381 0.00 0.00 39.62 3.02
616 624 2.370281 AGTTGATACGCCACTGTCAG 57.630 50.000 0.00 0.00 0.00 3.51
654 666 1.275573 GGTGGGTCAGAGTACTTGGTC 59.724 57.143 0.00 0.00 0.00 4.02
655 667 1.349067 GGTGGGTCAGAGTACTTGGT 58.651 55.000 0.00 0.00 0.00 3.67
656 668 1.348064 TGGTGGGTCAGAGTACTTGG 58.652 55.000 0.00 0.00 0.00 3.61
664 676 0.606096 CGTGTGTATGGTGGGTCAGA 59.394 55.000 0.00 0.00 0.00 3.27
665 677 1.019278 GCGTGTGTATGGTGGGTCAG 61.019 60.000 0.00 0.00 0.00 3.51
666 678 1.004320 GCGTGTGTATGGTGGGTCA 60.004 57.895 0.00 0.00 0.00 4.02
669 681 0.740868 CAGAGCGTGTGTATGGTGGG 60.741 60.000 0.00 0.00 0.00 4.61
670 682 1.361668 GCAGAGCGTGTGTATGGTGG 61.362 60.000 0.00 0.00 0.00 4.61
671 683 0.670239 TGCAGAGCGTGTGTATGGTG 60.670 55.000 0.00 0.00 0.00 4.17
673 685 0.390340 ACTGCAGAGCGTGTGTATGG 60.390 55.000 23.35 0.00 0.00 2.74
693 767 3.653009 TCGCAGCTGCTTGTGCAC 61.653 61.111 34.22 10.75 45.31 4.57
710 786 2.470821 GTCAGTGTGCGAAACTACTGT 58.529 47.619 0.00 0.00 38.26 3.55
862 958 0.833287 ATTCGAGGATGTGTGGGAGG 59.167 55.000 0.00 0.00 0.00 4.30
907 1007 3.703127 GGGGTGGTCGGTCAGGAC 61.703 72.222 0.00 0.00 36.18 3.85
995 1098 0.468226 GTCCTTCACCGCCATGGATA 59.532 55.000 18.40 0.00 42.00 2.59
1099 1207 1.622811 GATGATGAAGAGGGCGAGGAT 59.377 52.381 0.00 0.00 0.00 3.24
1321 1429 4.109675 GGTGGGGACGGTGATGGG 62.110 72.222 0.00 0.00 0.00 4.00
1395 1503 4.082523 ACGCTGTCCATGGACCGG 62.083 66.667 36.27 28.91 43.97 5.28
1396 1504 2.509336 GACGCTGTCCATGGACCG 60.509 66.667 36.27 32.97 43.97 4.79
1702 1829 5.232463 CCCTGAATTTGAATTTGGACACAG 58.768 41.667 9.51 0.00 0.00 3.66
1822 1994 5.163854 CGATATCGAAGCTTCAACCTTTTGT 60.164 40.000 25.47 1.99 43.02 2.83
1823 1995 5.063438 TCGATATCGAAGCTTCAACCTTTTG 59.937 40.000 24.92 7.27 46.30 2.44
1839 2011 8.508800 AACAAGAAAAGCTACTATCGATATCG 57.491 34.615 19.14 19.14 41.45 2.92
1840 2012 9.685828 AGAACAAGAAAAGCTACTATCGATATC 57.314 33.333 5.40 0.00 0.00 1.63
1842 2014 9.517609 GAAGAACAAGAAAAGCTACTATCGATA 57.482 33.333 4.78 4.78 0.00 2.92
1843 2015 8.035394 TGAAGAACAAGAAAAGCTACTATCGAT 58.965 33.333 2.16 2.16 0.00 3.59
1964 2156 7.753132 CGAAAAATAGATCAATTTTGTCCGGAA 59.247 33.333 5.23 0.00 38.68 4.30
1983 2175 8.458843 CACTGTTCACTTAATATCCCGAAAAAT 58.541 33.333 0.00 0.00 0.00 1.82
1984 2176 7.446013 ACACTGTTCACTTAATATCCCGAAAAA 59.554 33.333 0.00 0.00 0.00 1.94
1989 2181 4.503007 CGACACTGTTCACTTAATATCCCG 59.497 45.833 0.00 0.00 0.00 5.14
1991 2183 5.109903 AGCGACACTGTTCACTTAATATCC 58.890 41.667 0.00 0.00 0.00 2.59
1994 2186 5.128992 TGAGCGACACTGTTCACTTAATA 57.871 39.130 0.00 0.00 0.00 0.98
1998 2190 2.205074 CTTGAGCGACACTGTTCACTT 58.795 47.619 0.00 0.00 0.00 3.16
1999 2191 1.858091 CTTGAGCGACACTGTTCACT 58.142 50.000 0.00 0.00 0.00 3.41
2000 2192 0.233332 GCTTGAGCGACACTGTTCAC 59.767 55.000 0.00 0.00 0.00 3.18
2012 2204 1.645034 TTATGCACGAGAGCTTGAGC 58.355 50.000 0.00 0.00 42.49 4.26
2013 2205 4.447054 CCTTATTATGCACGAGAGCTTGAG 59.553 45.833 0.00 0.00 34.99 3.02
2015 2207 3.059325 GCCTTATTATGCACGAGAGCTTG 60.059 47.826 0.00 0.00 34.99 4.01
2016 2208 3.134458 GCCTTATTATGCACGAGAGCTT 58.866 45.455 0.00 0.00 34.99 3.74
2017 2209 2.366916 AGCCTTATTATGCACGAGAGCT 59.633 45.455 0.00 0.00 34.99 4.09
2021 2225 6.366332 CCTAAGTAAGCCTTATTATGCACGAG 59.634 42.308 0.00 0.00 35.14 4.18
2033 2237 6.780522 TGAACCAAAAATCCTAAGTAAGCCTT 59.219 34.615 0.00 0.00 37.17 4.35
2034 2238 6.311735 TGAACCAAAAATCCTAAGTAAGCCT 58.688 36.000 0.00 0.00 0.00 4.58
2035 2239 6.208797 ACTGAACCAAAAATCCTAAGTAAGCC 59.791 38.462 0.00 0.00 0.00 4.35
2036 2240 7.215719 ACTGAACCAAAAATCCTAAGTAAGC 57.784 36.000 0.00 0.00 0.00 3.09
2038 2242 9.629878 TGTTACTGAACCAAAAATCCTAAGTAA 57.370 29.630 0.00 0.00 34.38 2.24
2040 2244 7.778382 ACTGTTACTGAACCAAAAATCCTAAGT 59.222 33.333 0.00 0.00 34.38 2.24
2041 2245 8.166422 ACTGTTACTGAACCAAAAATCCTAAG 57.834 34.615 0.00 0.00 34.38 2.18
2042 2246 8.528044 AACTGTTACTGAACCAAAAATCCTAA 57.472 30.769 0.00 0.00 34.38 2.69
2043 2247 9.629878 TTAACTGTTACTGAACCAAAAATCCTA 57.370 29.630 0.00 0.00 34.38 2.94
2045 2249 8.192110 TGTTAACTGTTACTGAACCAAAAATCC 58.808 33.333 7.22 0.00 34.38 3.01
2046 2250 9.016623 GTGTTAACTGTTACTGAACCAAAAATC 57.983 33.333 7.22 0.00 34.38 2.17
2048 2252 7.022384 CGTGTTAACTGTTACTGAACCAAAAA 58.978 34.615 7.22 0.00 34.38 1.94
2050 2254 5.447548 GCGTGTTAACTGTTACTGAACCAAA 60.448 40.000 7.22 0.00 34.38 3.28
2051 2255 4.034279 GCGTGTTAACTGTTACTGAACCAA 59.966 41.667 7.22 0.00 34.38 3.67
2052 2256 3.556775 GCGTGTTAACTGTTACTGAACCA 59.443 43.478 7.22 0.00 34.38 3.67
2053 2257 3.805971 AGCGTGTTAACTGTTACTGAACC 59.194 43.478 7.22 0.00 34.38 3.62
2054 2258 5.005971 TGAAGCGTGTTAACTGTTACTGAAC 59.994 40.000 7.22 0.00 36.00 3.18
2055 2259 5.005971 GTGAAGCGTGTTAACTGTTACTGAA 59.994 40.000 7.22 0.00 0.00 3.02
2056 2260 4.505191 GTGAAGCGTGTTAACTGTTACTGA 59.495 41.667 7.22 0.00 0.00 3.41
2057 2261 4.506654 AGTGAAGCGTGTTAACTGTTACTG 59.493 41.667 7.22 0.00 0.00 2.74
2058 2262 4.690122 AGTGAAGCGTGTTAACTGTTACT 58.310 39.130 7.22 0.27 0.00 2.24
2059 2263 5.399604 AAGTGAAGCGTGTTAACTGTTAC 57.600 39.130 7.22 0.00 0.00 2.50
2082 2302 1.004398 CACGCGCTTCACTTTGTTACA 60.004 47.619 5.73 0.00 0.00 2.41
2121 2342 2.493713 ACTACCGCGATGAATCAGAC 57.506 50.000 8.23 0.00 0.00 3.51
2129 2352 1.138047 GACCACGAACTACCGCGATG 61.138 60.000 8.23 0.00 0.00 3.84
2160 2383 1.668237 GGCAAGATCCGAGAGAAAAGC 59.332 52.381 0.00 0.00 0.00 3.51
2177 2400 1.484038 ACACTTTCAGCCAAAAGGCA 58.516 45.000 9.42 0.00 39.96 4.75
2178 2401 2.602257 AACACTTTCAGCCAAAAGGC 57.398 45.000 11.78 0.00 39.96 4.35
2179 2402 4.391405 AGAAACACTTTCAGCCAAAAGG 57.609 40.909 11.78 5.01 42.10 3.11
2222 2445 0.038709 GGGCGTGATCAGCTAGCTAG 60.039 60.000 18.86 16.84 34.52 3.42
2223 2446 1.796190 CGGGCGTGATCAGCTAGCTA 61.796 60.000 18.86 6.64 34.52 3.32
2240 2463 1.876156 GATTAGGCAGCAGGATTTCGG 59.124 52.381 0.00 0.00 0.00 4.30
2243 2466 3.285484 CACTGATTAGGCAGCAGGATTT 58.715 45.455 0.00 0.00 39.51 2.17
2338 2628 0.169672 CAAGCGTCCAATTGAGCCAG 59.830 55.000 7.12 1.88 0.00 4.85
2405 2703 3.441101 ACTACTAGGTCACCATCAGCAA 58.559 45.455 0.00 0.00 0.00 3.91
2481 2795 7.243487 AGTCAAAATCATAAAGTACACATGCG 58.757 34.615 0.00 0.00 0.00 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.