Multiple sequence alignment - TraesCS2A01G583500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G583500 chr2A 100.000 2989 0 0 1 2989 775357516 775360504 0.000000e+00 5520.0
1 TraesCS2A01G583500 chr2A 97.488 637 13 1 1127 1760 775308990 775308354 0.000000e+00 1085.0
2 TraesCS2A01G583500 chr2D 87.914 1870 145 46 806 2634 649377640 649375811 0.000000e+00 2126.0
3 TraesCS2A01G583500 chr2D 85.833 1087 86 44 1112 2142 649388896 649389970 0.000000e+00 1092.0
4 TraesCS2A01G583500 chr2D 84.615 832 54 31 1 801 649378474 649377686 0.000000e+00 760.0
5 TraesCS2A01G583500 chr2D 84.772 197 26 3 2795 2987 377124580 377124776 8.450000e-46 195.0
6 TraesCS2A01G583500 chr2D 86.408 103 4 1 2645 2747 649375749 649375657 1.470000e-18 104.0
7 TraesCS2A01G583500 chr2B 90.264 1099 56 25 1106 2181 785230209 785229139 0.000000e+00 1389.0
8 TraesCS2A01G583500 chr2B 95.016 642 29 3 1119 1760 785238649 785239287 0.000000e+00 1005.0
9 TraesCS2A01G583500 chr2B 88.546 227 25 1 4 229 785231897 785231671 1.060000e-69 274.0
10 TraesCS2A01G583500 chr2B 90.426 94 5 3 806 899 785230764 785230675 1.460000e-23 121.0
11 TraesCS2A01G583500 chr2B 95.000 40 2 0 594 633 785231057 785231018 2.490000e-06 63.9
12 TraesCS2A01G583500 chr5D 84.896 192 24 4 2795 2982 10748893 10749083 3.930000e-44 189.0
13 TraesCS2A01G583500 chr5D 83.500 200 27 5 2793 2987 58121098 58120900 6.580000e-42 182.0
14 TraesCS2A01G583500 chr3B 84.264 197 26 4 2795 2987 154187433 154187238 1.410000e-43 187.0
15 TraesCS2A01G583500 chr7B 84.865 185 24 2 2807 2987 240970072 240969888 1.830000e-42 183.0
16 TraesCS2A01G583500 chr4D 83.938 193 25 5 2795 2982 18212050 18211859 2.370000e-41 180.0
17 TraesCS2A01G583500 chrUn 83.505 194 27 3 2793 2982 413380543 413380351 3.060000e-40 176.0
18 TraesCS2A01G583500 chrUn 83.505 194 27 3 2793 2982 413381951 413381759 3.060000e-40 176.0
19 TraesCS2A01G583500 chr4B 83.505 194 27 3 2793 2982 44880538 44880346 3.060000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G583500 chr2A 775357516 775360504 2988 False 5520.000000 5520 100.000000 1 2989 1 chr2A.!!$F1 2988
1 TraesCS2A01G583500 chr2A 775308354 775308990 636 True 1085.000000 1085 97.488000 1127 1760 1 chr2A.!!$R1 633
2 TraesCS2A01G583500 chr2D 649388896 649389970 1074 False 1092.000000 1092 85.833000 1112 2142 1 chr2D.!!$F2 1030
3 TraesCS2A01G583500 chr2D 649375657 649378474 2817 True 996.666667 2126 86.312333 1 2747 3 chr2D.!!$R1 2746
4 TraesCS2A01G583500 chr2B 785238649 785239287 638 False 1005.000000 1005 95.016000 1119 1760 1 chr2B.!!$F1 641
5 TraesCS2A01G583500 chr2B 785229139 785231897 2758 True 461.975000 1389 91.059000 4 2181 4 chr2B.!!$R1 2177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
932 1471 0.038159 AAGCAAGGAAGAGTCGTCCG 60.038 55.0 17.96 7.43 40.36 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2854 3797 0.034059 GTGCCATCCGCTACTGCTAT 59.966 55.0 0.0 0.0 38.78 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.958876 GATGACGGGTGGTTGGGAAC 60.959 60.000 0.00 0.00 0.00 3.62
86 88 0.319728 CCATAGGGGATCTCAGTGCG 59.680 60.000 0.00 0.00 40.01 5.34
135 137 3.699038 TCTGAAACCAAAACCTTCCACTG 59.301 43.478 0.00 0.00 0.00 3.66
171 173 2.607750 AGCAAGAGAAGGCCCGGA 60.608 61.111 0.73 0.00 0.00 5.14
200 202 2.029290 GCCGACGGATGTATTAGTCCAT 60.029 50.000 20.50 0.00 34.05 3.41
201 203 3.575630 CCGACGGATGTATTAGTCCATG 58.424 50.000 8.64 0.00 34.05 3.66
204 206 3.314693 ACGGATGTATTAGTCCATGGGT 58.685 45.455 13.02 1.93 34.05 4.51
252 254 1.884464 CATGATGGAGGACGTGGCG 60.884 63.158 0.00 0.00 0.00 5.69
302 304 6.841119 TGTGAGGAATATGAAACACGAATTG 58.159 36.000 0.00 0.00 0.00 2.32
305 307 6.095300 TGAGGAATATGAAACACGAATTGCAT 59.905 34.615 0.00 0.00 0.00 3.96
335 337 7.346751 GGAAAACATCCTTTGGCAATATAGA 57.653 36.000 0.00 0.00 45.56 1.98
342 344 3.809832 CCTTTGGCAATATAGACAGACCG 59.190 47.826 0.00 0.00 0.00 4.79
360 362 2.165641 ACCGAGATGTCGCATTTGTAGA 59.834 45.455 6.76 0.00 45.41 2.59
361 363 2.535984 CCGAGATGTCGCATTTGTAGAC 59.464 50.000 6.76 2.75 45.41 2.59
364 366 3.262420 AGATGTCGCATTTGTAGACACC 58.738 45.455 11.25 4.57 45.99 4.16
367 369 1.128692 GTCGCATTTGTAGACACCAGC 59.871 52.381 0.00 0.00 35.19 4.85
368 370 1.155889 CGCATTTGTAGACACCAGCA 58.844 50.000 0.00 0.00 0.00 4.41
369 371 1.739466 CGCATTTGTAGACACCAGCAT 59.261 47.619 0.00 0.00 0.00 3.79
370 372 2.935849 CGCATTTGTAGACACCAGCATA 59.064 45.455 0.00 0.00 0.00 3.14
371 373 3.373748 CGCATTTGTAGACACCAGCATAA 59.626 43.478 0.00 0.00 0.00 1.90
372 374 4.142708 CGCATTTGTAGACACCAGCATAAA 60.143 41.667 0.00 0.00 0.00 1.40
373 375 5.618863 CGCATTTGTAGACACCAGCATAAAA 60.619 40.000 0.00 0.00 0.00 1.52
374 376 6.155827 GCATTTGTAGACACCAGCATAAAAA 58.844 36.000 0.00 0.00 0.00 1.94
375 377 6.813152 GCATTTGTAGACACCAGCATAAAAAT 59.187 34.615 0.00 0.00 0.00 1.82
376 378 7.973388 GCATTTGTAGACACCAGCATAAAAATA 59.027 33.333 0.00 0.00 0.00 1.40
379 381 8.574251 TTGTAGACACCAGCATAAAAATATGT 57.426 30.769 0.00 0.00 0.00 2.29
380 382 9.674068 TTGTAGACACCAGCATAAAAATATGTA 57.326 29.630 0.00 0.00 0.00 2.29
381 383 9.845740 TGTAGACACCAGCATAAAAATATGTAT 57.154 29.630 0.00 0.00 0.00 2.29
476 497 7.122715 AGCCCTATATTTGGTAAACATGTTGA 58.877 34.615 12.82 0.38 0.00 3.18
501 523 8.020861 ACGTTCGTCATTTTAGCAGTTTATAA 57.979 30.769 0.00 0.00 0.00 0.98
502 524 8.662141 ACGTTCGTCATTTTAGCAGTTTATAAT 58.338 29.630 0.00 0.00 0.00 1.28
506 528 8.770828 TCGTCATTTTAGCAGTTTATAATAGGC 58.229 33.333 0.00 0.00 0.00 3.93
507 529 8.015658 CGTCATTTTAGCAGTTTATAATAGGCC 58.984 37.037 0.00 0.00 0.00 5.19
508 530 8.015658 GTCATTTTAGCAGTTTATAATAGGCCG 58.984 37.037 0.00 0.00 0.00 6.13
511 533 7.868906 TTTAGCAGTTTATAATAGGCCGTTT 57.131 32.000 0.00 0.00 0.00 3.60
633 1041 3.190327 TGAAATCTGGCACACATAAACGG 59.810 43.478 0.00 0.00 0.00 4.44
635 1043 0.958382 TCTGGCACACATAAACGGGC 60.958 55.000 0.00 0.00 0.00 6.13
637 1045 2.329614 GGCACACATAAACGGGCGT 61.330 57.895 0.00 0.00 0.00 5.68
638 1046 1.154301 GCACACATAAACGGGCGTG 60.154 57.895 0.00 0.00 35.48 5.34
639 1047 1.570347 GCACACATAAACGGGCGTGA 61.570 55.000 0.00 0.00 33.56 4.35
640 1048 1.083489 CACACATAAACGGGCGTGAT 58.917 50.000 0.00 0.00 33.56 3.06
641 1049 1.466950 CACACATAAACGGGCGTGATT 59.533 47.619 0.00 0.00 33.56 2.57
642 1050 2.673862 CACACATAAACGGGCGTGATTA 59.326 45.455 0.00 0.00 33.56 1.75
643 1051 3.311322 CACACATAAACGGGCGTGATTAT 59.689 43.478 0.00 0.00 33.56 1.28
644 1052 3.942748 ACACATAAACGGGCGTGATTATT 59.057 39.130 0.00 0.00 33.56 1.40
645 1053 5.006844 CACACATAAACGGGCGTGATTATTA 59.993 40.000 0.00 0.00 33.56 0.98
653 1084 4.753107 ACGGGCGTGATTATTAATTACAGG 59.247 41.667 10.76 0.00 0.00 4.00
743 1197 1.815003 GGCAGAGTCAAACCAATCAGG 59.185 52.381 0.00 0.00 45.67 3.86
786 1246 3.739613 CCCTACCCCACAAGCCCC 61.740 72.222 0.00 0.00 0.00 5.80
787 1247 2.938798 CCTACCCCACAAGCCCCA 60.939 66.667 0.00 0.00 0.00 4.96
788 1248 2.355115 CTACCCCACAAGCCCCAC 59.645 66.667 0.00 0.00 0.00 4.61
789 1249 3.261677 TACCCCACAAGCCCCACC 61.262 66.667 0.00 0.00 0.00 4.61
911 1450 3.213206 ACTCACAATCAGGTCAAGCAA 57.787 42.857 0.00 0.00 0.00 3.91
929 1468 2.213499 CAACAAGCAAGGAAGAGTCGT 58.787 47.619 0.00 0.00 0.00 4.34
932 1471 0.038159 AAGCAAGGAAGAGTCGTCCG 60.038 55.000 17.96 7.43 40.36 4.79
935 1474 0.454620 CAAGGAAGAGTCGTCCGTCG 60.455 60.000 17.96 7.99 40.36 5.12
964 1503 1.248101 GCTTGCGTACCCAACCCAAT 61.248 55.000 0.00 0.00 0.00 3.16
971 1510 0.038455 TACCCAACCCAATCCAACCG 59.962 55.000 0.00 0.00 0.00 4.44
972 1511 2.645192 CCCAACCCAATCCAACCGC 61.645 63.158 0.00 0.00 0.00 5.68
973 1512 2.566010 CAACCCAATCCAACCGCG 59.434 61.111 0.00 0.00 0.00 6.46
974 1513 2.114411 AACCCAATCCAACCGCGT 59.886 55.556 4.92 0.00 0.00 6.01
976 1515 3.131478 CCCAATCCAACCGCGTCC 61.131 66.667 4.92 0.00 0.00 4.79
978 1517 3.131478 CAATCCAACCGCGTCCCC 61.131 66.667 4.92 0.00 0.00 4.81
979 1518 3.642503 AATCCAACCGCGTCCCCA 61.643 61.111 4.92 0.00 0.00 4.96
980 1519 3.198953 AATCCAACCGCGTCCCCAA 62.199 57.895 4.92 0.00 0.00 4.12
982 1521 2.493273 ATCCAACCGCGTCCCCAAAT 62.493 55.000 4.92 0.00 0.00 2.32
983 1522 2.696759 CCAACCGCGTCCCCAAATC 61.697 63.158 4.92 0.00 0.00 2.17
984 1523 1.969064 CAACCGCGTCCCCAAATCA 60.969 57.895 4.92 0.00 0.00 2.57
985 1524 1.228306 AACCGCGTCCCCAAATCAA 60.228 52.632 4.92 0.00 0.00 2.57
986 1525 0.610785 AACCGCGTCCCCAAATCAAT 60.611 50.000 4.92 0.00 0.00 2.57
990 1529 1.391933 GCGTCCCCAAATCAATCCCC 61.392 60.000 0.00 0.00 0.00 4.81
991 1530 0.258774 CGTCCCCAAATCAATCCCCT 59.741 55.000 0.00 0.00 0.00 4.79
992 1531 1.750682 CGTCCCCAAATCAATCCCCTC 60.751 57.143 0.00 0.00 0.00 4.30
993 1532 0.933700 TCCCCAAATCAATCCCCTCC 59.066 55.000 0.00 0.00 0.00 4.30
994 1533 0.105504 CCCCAAATCAATCCCCTCCC 60.106 60.000 0.00 0.00 0.00 4.30
995 1534 0.105504 CCCAAATCAATCCCCTCCCC 60.106 60.000 0.00 0.00 0.00 4.81
996 1535 0.105504 CCAAATCAATCCCCTCCCCC 60.106 60.000 0.00 0.00 0.00 5.40
1018 1557 4.514792 CCATCCCCTACTTATATCCCACCT 60.515 50.000 0.00 0.00 0.00 4.00
1019 1558 4.415224 TCCCCTACTTATATCCCACCTC 57.585 50.000 0.00 0.00 0.00 3.85
1020 1559 3.097614 CCCCTACTTATATCCCACCTCG 58.902 54.545 0.00 0.00 0.00 4.63
1025 1564 1.116536 TTATATCCCACCTCGCCGCA 61.117 55.000 0.00 0.00 0.00 5.69
1026 1565 1.116536 TATATCCCACCTCGCCGCAA 61.117 55.000 0.00 0.00 0.00 4.85
1027 1566 1.978455 ATATCCCACCTCGCCGCAAA 61.978 55.000 0.00 0.00 0.00 3.68
1028 1567 1.978455 TATCCCACCTCGCCGCAAAT 61.978 55.000 0.00 0.00 0.00 2.32
1030 1569 2.745884 CCACCTCGCCGCAAATCA 60.746 61.111 0.00 0.00 0.00 2.57
1031 1570 2.480555 CACCTCGCCGCAAATCAC 59.519 61.111 0.00 0.00 0.00 3.06
1045 1588 3.367703 GCAAATCACTCACCCAAATCCAG 60.368 47.826 0.00 0.00 0.00 3.86
1046 1589 2.134789 ATCACTCACCCAAATCCAGC 57.865 50.000 0.00 0.00 0.00 4.85
1052 1595 2.169810 ACCCAAATCCAGCCCACCT 61.170 57.895 0.00 0.00 0.00 4.00
1053 1596 1.380380 CCCAAATCCAGCCCACCTC 60.380 63.158 0.00 0.00 0.00 3.85
1054 1597 1.380380 CCAAATCCAGCCCACCTCC 60.380 63.158 0.00 0.00 0.00 4.30
1055 1598 1.383799 CAAATCCAGCCCACCTCCA 59.616 57.895 0.00 0.00 0.00 3.86
1056 1599 0.251742 CAAATCCAGCCCACCTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
1057 1600 0.712380 AAATCCAGCCCACCTCCAAT 59.288 50.000 0.00 0.00 0.00 3.16
1059 1602 0.625683 ATCCAGCCCACCTCCAATCT 60.626 55.000 0.00 0.00 0.00 2.40
1060 1603 1.077212 CCAGCCCACCTCCAATCTG 60.077 63.158 0.00 0.00 0.00 2.90
1061 1604 1.751927 CAGCCCACCTCCAATCTGC 60.752 63.158 0.00 0.00 0.00 4.26
1062 1605 2.440980 GCCCACCTCCAATCTGCC 60.441 66.667 0.00 0.00 0.00 4.85
1065 1608 1.153289 CCACCTCCAATCTGCCTCG 60.153 63.158 0.00 0.00 0.00 4.63
1068 1611 2.587194 CTCCAATCTGCCTCGCCG 60.587 66.667 0.00 0.00 0.00 6.46
1094 1849 0.394352 GGAACCACATCCAGCCGAAT 60.394 55.000 0.00 0.00 39.42 3.34
1096 1851 0.394352 AACCACATCCAGCCGAATCC 60.394 55.000 0.00 0.00 0.00 3.01
1100 1855 2.039405 ATCCAGCCGAATCCCCCT 60.039 61.111 0.00 0.00 0.00 4.79
1101 1856 2.150051 ATCCAGCCGAATCCCCCTC 61.150 63.158 0.00 0.00 0.00 4.30
1102 1857 2.914734 ATCCAGCCGAATCCCCCTCA 62.915 60.000 0.00 0.00 0.00 3.86
1103 1858 2.507944 CAGCCGAATCCCCCTCAG 59.492 66.667 0.00 0.00 0.00 3.35
1104 1859 3.483869 AGCCGAATCCCCCTCAGC 61.484 66.667 0.00 0.00 0.00 4.26
1116 1896 2.046507 CTCAGCTCCACCACCAGC 60.047 66.667 0.00 0.00 35.73 4.85
1744 2527 2.281761 AAGCCCACCGAGTGCAAG 60.282 61.111 0.00 0.00 31.34 4.01
1760 2543 2.087646 GCAAGGTCTGGTTCTGATTCC 58.912 52.381 0.00 0.00 0.00 3.01
1764 2554 1.084370 GTCTGGTTCTGATTCCGCCG 61.084 60.000 0.00 0.00 0.00 6.46
1791 2581 0.028110 GATTCGATTCCTTGGTGCGC 59.972 55.000 0.00 0.00 0.00 6.09
1811 2601 2.106683 CGGTGCGTTTGGGGATCTC 61.107 63.158 0.00 0.00 0.00 2.75
1823 2613 4.210611 TGGGGATCTCATCTCATCTCTT 57.789 45.455 0.00 0.00 0.00 2.85
1824 2614 4.158786 TGGGGATCTCATCTCATCTCTTC 58.841 47.826 0.00 0.00 0.00 2.87
1825 2615 4.140734 TGGGGATCTCATCTCATCTCTTCT 60.141 45.833 0.00 0.00 0.00 2.85
1826 2616 4.463891 GGGGATCTCATCTCATCTCTTCTC 59.536 50.000 0.00 0.00 0.00 2.87
1828 2618 5.776716 GGGATCTCATCTCATCTCTTCTCTT 59.223 44.000 0.00 0.00 0.00 2.85
1829 2619 6.071728 GGGATCTCATCTCATCTCTTCTCTTC 60.072 46.154 0.00 0.00 0.00 2.87
1830 2620 6.718454 GGATCTCATCTCATCTCTTCTCTTCT 59.282 42.308 0.00 0.00 0.00 2.85
1831 2621 7.094463 GGATCTCATCTCATCTCTTCTCTTCTC 60.094 44.444 0.00 0.00 0.00 2.87
1844 2654 5.293324 TCTTCTCTTCTCTTCTCTCGATTCG 59.707 44.000 0.00 0.00 0.00 3.34
1845 2655 4.760878 TCTCTTCTCTTCTCTCGATTCGA 58.239 43.478 8.70 8.70 0.00 3.71
1914 2737 4.687948 CGTCCATTAGCATGTAGATCTTGG 59.312 45.833 0.00 0.00 0.00 3.61
1935 2758 5.592054 TGGTAGTAGAGATTTTCGCATCTG 58.408 41.667 0.00 0.00 33.36 2.90
1943 2776 1.448985 TTTTCGCATCTGGTACTGCC 58.551 50.000 0.00 0.00 34.89 4.85
2014 2868 6.212791 TGGTTCTTTGTTAGCAGGAGTACTAT 59.787 38.462 0.00 0.00 0.00 2.12
2026 2880 5.558818 CAGGAGTACTATCCACCGTATACT 58.441 45.833 0.00 0.00 42.26 2.12
2029 2883 7.828223 CAGGAGTACTATCCACCGTATACTATT 59.172 40.741 0.00 0.00 42.26 1.73
2030 2884 9.051259 AGGAGTACTATCCACCGTATACTATTA 57.949 37.037 0.00 0.00 42.26 0.98
2031 2885 9.103861 GGAGTACTATCCACCGTATACTATTAC 57.896 40.741 0.00 0.00 39.34 1.89
2143 3021 2.082231 CAGACTCTGCTGTTGGATTGG 58.918 52.381 0.00 0.00 0.00 3.16
2173 3059 8.839343 TGTTGATATATTCATTCATGCTCGTTT 58.161 29.630 0.00 0.00 33.34 3.60
2176 3062 8.839343 TGATATATTCATTCATGCTCGTTTGTT 58.161 29.630 0.00 0.00 0.00 2.83
2193 3079 3.469899 TGTTCATCGCAATTTCTTCCG 57.530 42.857 0.00 0.00 0.00 4.30
2217 3104 2.223479 ACCATGACAACTTTTCGTGTGC 60.223 45.455 0.00 0.00 0.00 4.57
2218 3105 2.384382 CATGACAACTTTTCGTGTGCC 58.616 47.619 0.00 0.00 0.00 5.01
2219 3106 0.375454 TGACAACTTTTCGTGTGCCG 59.625 50.000 0.00 0.00 38.13 5.69
2230 3117 1.579429 GTGTGCCGTGACCAAATCC 59.421 57.895 0.00 0.00 0.00 3.01
2231 3118 1.149401 TGTGCCGTGACCAAATCCA 59.851 52.632 0.00 0.00 0.00 3.41
2245 3132 1.816863 AATCCACACGGCAGTCGAGT 61.817 55.000 0.00 0.00 43.07 4.18
2246 3133 2.214181 ATCCACACGGCAGTCGAGTC 62.214 60.000 0.00 0.00 40.51 3.36
2247 3134 2.801162 CACACGGCAGTCGAGTCG 60.801 66.667 6.09 6.09 40.51 4.18
2250 3137 2.358369 ACGGCAGTCGAGTCGAGA 60.358 61.111 17.12 0.00 42.43 4.04
2251 3138 2.392181 ACGGCAGTCGAGTCGAGAG 61.392 63.158 17.12 12.46 42.43 3.20
2252 3139 2.101380 GGCAGTCGAGTCGAGAGC 59.899 66.667 23.72 23.72 36.23 4.09
2253 3140 2.403378 GGCAGTCGAGTCGAGAGCT 61.403 63.158 27.86 16.03 36.23 4.09
2254 3141 1.226267 GCAGTCGAGTCGAGAGCTG 60.226 63.158 24.21 22.71 36.23 4.24
2258 3145 0.028770 GTCGAGTCGAGAGCTGGATG 59.971 60.000 17.12 0.00 36.23 3.51
2276 3163 0.110419 TGATTTCGCACGAAAAGCCG 60.110 50.000 20.60 0.00 45.60 5.52
2312 3199 3.181465 ACCTCTGTTTTCAGTGTCGATGT 60.181 43.478 0.00 0.00 46.98 3.06
2313 3200 3.809832 CCTCTGTTTTCAGTGTCGATGTT 59.190 43.478 0.00 0.00 46.98 2.71
2314 3201 4.319046 CCTCTGTTTTCAGTGTCGATGTTG 60.319 45.833 0.00 0.00 46.98 3.33
2378 3265 2.570169 CAGCGTATGTGTTTTCCGTTG 58.430 47.619 0.00 0.00 0.00 4.10
2387 3274 2.596862 GTGTTTTCCGTTGTTCAGTTGC 59.403 45.455 0.00 0.00 0.00 4.17
2390 3277 2.368131 TTCCGTTGTTCAGTTGCGCG 62.368 55.000 0.00 0.00 0.00 6.86
2395 3282 4.719616 GTTCAGTTGCGCGTCGGC 62.720 66.667 8.43 0.00 0.00 5.54
2409 3296 1.528603 CGTCGGCGTCAACTAGAGTAC 60.529 57.143 6.85 0.00 0.00 2.73
2410 3297 1.736681 GTCGGCGTCAACTAGAGTACT 59.263 52.381 6.85 0.00 0.00 2.73
2431 3318 1.732259 AGCAAATTAACACGCCGAGAG 59.268 47.619 0.00 0.00 0.00 3.20
2453 3340 1.618837 AGAGCAGGTTTCGAGCAGTTA 59.381 47.619 0.00 0.00 0.00 2.24
2454 3341 1.996191 GAGCAGGTTTCGAGCAGTTAG 59.004 52.381 0.00 0.00 0.00 2.34
2479 3367 0.796312 CGTCCAAATCGAACCAGGTG 59.204 55.000 0.00 0.00 0.00 4.00
2486 3374 2.564553 ATCGAACCAGGTGAGCGAGC 62.565 60.000 15.21 0.00 34.25 5.03
2494 3382 1.141019 GGTGAGCGAGCCGTGAATA 59.859 57.895 0.00 0.00 0.00 1.75
2524 3416 1.562210 GCTTCATTAGCGCGCTCTC 59.438 57.895 40.23 15.40 40.71 3.20
2530 3422 1.191868 CATTAGCGCGCTCTCAATGAG 59.808 52.381 35.17 18.85 45.33 2.90
2549 3441 2.331132 GCTGTTGGCCTGAGACTGC 61.331 63.158 3.32 9.48 34.27 4.40
2550 3442 1.071987 CTGTTGGCCTGAGACTGCA 59.928 57.895 3.32 0.00 0.00 4.41
2573 3465 0.388907 CAATTTGGTTGGCAGAGGCG 60.389 55.000 0.00 0.00 42.47 5.52
2597 3489 2.194271 GAACGAGATTAAGTGGCTCCG 58.806 52.381 0.00 0.00 0.00 4.63
2634 3526 2.191375 CCGTGCTGGATGGATGCT 59.809 61.111 0.36 0.00 42.00 3.79
2635 3527 1.452651 CCGTGCTGGATGGATGCTT 60.453 57.895 0.36 0.00 42.00 3.91
2636 3528 1.721664 CCGTGCTGGATGGATGCTTG 61.722 60.000 0.36 0.00 42.00 4.01
2639 3531 1.317431 TGCTGGATGGATGCTTGCAC 61.317 55.000 0.00 0.00 0.00 4.57
2640 3532 1.035932 GCTGGATGGATGCTTGCACT 61.036 55.000 0.00 0.00 0.00 4.40
2641 3533 1.748244 GCTGGATGGATGCTTGCACTA 60.748 52.381 0.00 0.00 0.00 2.74
2642 3534 2.219458 CTGGATGGATGCTTGCACTAG 58.781 52.381 0.00 0.00 0.00 2.57
2643 3535 1.561076 TGGATGGATGCTTGCACTAGT 59.439 47.619 0.00 0.00 0.00 2.57
2673 3616 0.032952 GAGTTGAGGTACGGTGCACA 59.967 55.000 20.43 0.00 0.00 4.57
2674 3617 0.685097 AGTTGAGGTACGGTGCACAT 59.315 50.000 20.43 8.72 0.00 3.21
2675 3618 0.796312 GTTGAGGTACGGTGCACATG 59.204 55.000 20.43 13.01 0.00 3.21
2676 3619 0.953471 TTGAGGTACGGTGCACATGC 60.953 55.000 20.43 9.51 42.50 4.06
2677 3620 1.079127 GAGGTACGGTGCACATGCT 60.079 57.895 20.43 3.04 42.66 3.79
2678 3621 1.079127 AGGTACGGTGCACATGCTC 60.079 57.895 20.43 4.92 42.66 4.26
2679 3622 1.079127 GGTACGGTGCACATGCTCT 60.079 57.895 20.43 0.00 42.66 4.09
2680 3623 1.361668 GGTACGGTGCACATGCTCTG 61.362 60.000 20.43 12.11 44.08 3.35
2681 3624 2.427320 ACGGTGCACATGCTCTGT 59.573 55.556 20.43 13.29 45.82 3.41
2682 3625 4.596311 CGGTGCACATGCTCTGTA 57.404 55.556 20.43 0.00 42.66 2.74
2712 3655 2.156446 GCACATGGTACCGTCGACG 61.156 63.158 30.33 30.33 39.44 5.12
2738 3681 2.693285 GCGCAATACGTCCGTGTC 59.307 61.111 0.30 0.00 46.11 3.67
2747 3690 5.051907 GCAATACGTCCGTGTCAATTACTAG 60.052 44.000 1.98 0.00 0.00 2.57
2748 3691 2.872370 ACGTCCGTGTCAATTACTAGC 58.128 47.619 0.00 0.00 0.00 3.42
2749 3692 2.190981 CGTCCGTGTCAATTACTAGCC 58.809 52.381 0.00 0.00 0.00 3.93
2750 3693 2.190981 GTCCGTGTCAATTACTAGCCG 58.809 52.381 0.00 0.00 0.00 5.52
2751 3694 0.928229 CCGTGTCAATTACTAGCCGC 59.072 55.000 0.00 0.00 0.00 6.53
2752 3695 0.928229 CGTGTCAATTACTAGCCGCC 59.072 55.000 0.00 0.00 0.00 6.13
2753 3696 0.928229 GTGTCAATTACTAGCCGCCG 59.072 55.000 0.00 0.00 0.00 6.46
2754 3697 0.179094 TGTCAATTACTAGCCGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
2755 3698 0.103572 GTCAATTACTAGCCGCCGGA 59.896 55.000 7.68 0.00 0.00 5.14
2756 3699 0.103572 TCAATTACTAGCCGCCGGAC 59.896 55.000 7.68 0.00 0.00 4.79
2757 3700 1.066918 AATTACTAGCCGCCGGACG 59.933 57.895 7.68 8.73 43.15 4.79
2767 3710 4.659480 GCCGGACGACTTAACACA 57.341 55.556 5.05 0.00 0.00 3.72
2768 3711 2.147820 GCCGGACGACTTAACACAC 58.852 57.895 5.05 0.00 0.00 3.82
2769 3712 0.319297 GCCGGACGACTTAACACACT 60.319 55.000 5.05 0.00 0.00 3.55
2770 3713 1.415374 CCGGACGACTTAACACACTG 58.585 55.000 0.00 0.00 0.00 3.66
2771 3714 0.782384 CGGACGACTTAACACACTGC 59.218 55.000 0.00 0.00 0.00 4.40
2772 3715 1.602165 CGGACGACTTAACACACTGCT 60.602 52.381 0.00 0.00 0.00 4.24
2773 3716 2.351060 CGGACGACTTAACACACTGCTA 60.351 50.000 0.00 0.00 0.00 3.49
2774 3717 3.243336 GGACGACTTAACACACTGCTAG 58.757 50.000 0.00 0.00 0.00 3.42
2775 3718 3.305199 GGACGACTTAACACACTGCTAGT 60.305 47.826 0.00 0.00 0.00 2.57
2776 3719 4.083110 GGACGACTTAACACACTGCTAGTA 60.083 45.833 0.00 0.00 0.00 1.82
2777 3720 5.392811 GGACGACTTAACACACTGCTAGTAT 60.393 44.000 0.00 0.00 0.00 2.12
2778 3721 6.183360 GGACGACTTAACACACTGCTAGTATA 60.183 42.308 0.00 0.00 0.00 1.47
2779 3722 7.330900 ACGACTTAACACACTGCTAGTATAT 57.669 36.000 0.00 0.00 0.00 0.86
2780 3723 8.442632 ACGACTTAACACACTGCTAGTATATA 57.557 34.615 0.00 0.00 0.00 0.86
2781 3724 9.064706 ACGACTTAACACACTGCTAGTATATAT 57.935 33.333 0.00 0.00 0.00 0.86
2815 3758 6.970613 TCGAAAGAAGGAAAACTGTTTTTAGC 59.029 34.615 18.58 7.20 34.00 3.09
2816 3759 6.972901 CGAAAGAAGGAAAACTGTTTTTAGCT 59.027 34.615 18.58 11.35 34.94 3.32
2817 3760 7.165977 CGAAAGAAGGAAAACTGTTTTTAGCTC 59.834 37.037 18.58 12.80 34.94 4.09
2818 3761 6.392625 AGAAGGAAAACTGTTTTTAGCTCC 57.607 37.500 18.58 14.62 34.94 4.70
2819 3762 5.891551 AGAAGGAAAACTGTTTTTAGCTCCA 59.108 36.000 18.58 0.00 34.94 3.86
2820 3763 5.774498 AGGAAAACTGTTTTTAGCTCCAG 57.226 39.130 18.58 0.00 34.94 3.86
2821 3764 5.201243 AGGAAAACTGTTTTTAGCTCCAGT 58.799 37.500 18.58 0.00 39.73 4.00
2822 3765 5.067805 AGGAAAACTGTTTTTAGCTCCAGTG 59.932 40.000 18.58 0.00 38.14 3.66
2823 3766 5.067283 GGAAAACTGTTTTTAGCTCCAGTGA 59.933 40.000 18.58 0.00 38.14 3.41
2824 3767 6.239036 GGAAAACTGTTTTTAGCTCCAGTGAT 60.239 38.462 18.58 0.00 38.14 3.06
2825 3768 6.715347 AAACTGTTTTTAGCTCCAGTGATT 57.285 33.333 0.00 0.00 38.14 2.57
2826 3769 5.948992 ACTGTTTTTAGCTCCAGTGATTC 57.051 39.130 0.00 0.00 36.82 2.52
2827 3770 5.376625 ACTGTTTTTAGCTCCAGTGATTCA 58.623 37.500 0.00 0.00 36.82 2.57
2828 3771 6.006449 ACTGTTTTTAGCTCCAGTGATTCAT 58.994 36.000 0.00 0.00 36.82 2.57
2829 3772 6.150140 ACTGTTTTTAGCTCCAGTGATTCATC 59.850 38.462 0.00 0.00 36.82 2.92
2830 3773 5.122239 TGTTTTTAGCTCCAGTGATTCATCG 59.878 40.000 0.00 0.00 0.00 3.84
2831 3774 4.736126 TTTAGCTCCAGTGATTCATCGA 57.264 40.909 0.00 0.00 0.00 3.59
2832 3775 4.736126 TTAGCTCCAGTGATTCATCGAA 57.264 40.909 0.00 0.00 0.00 3.71
2833 3776 3.834489 AGCTCCAGTGATTCATCGAAT 57.166 42.857 0.00 0.00 34.71 3.34
2834 3777 4.944619 AGCTCCAGTGATTCATCGAATA 57.055 40.909 0.00 0.00 31.89 1.75
2835 3778 4.880759 AGCTCCAGTGATTCATCGAATAG 58.119 43.478 0.00 0.00 31.89 1.73
2836 3779 4.343526 AGCTCCAGTGATTCATCGAATAGT 59.656 41.667 0.00 0.00 31.89 2.12
2837 3780 5.053145 GCTCCAGTGATTCATCGAATAGTT 58.947 41.667 0.00 0.00 31.89 2.24
2838 3781 5.050499 GCTCCAGTGATTCATCGAATAGTTG 60.050 44.000 0.00 0.00 31.89 3.16
2839 3782 5.977635 TCCAGTGATTCATCGAATAGTTGT 58.022 37.500 0.00 0.00 31.89 3.32
2840 3783 6.042777 TCCAGTGATTCATCGAATAGTTGTC 58.957 40.000 0.00 0.00 31.89 3.18
2841 3784 5.051441 CCAGTGATTCATCGAATAGTTGTCG 60.051 44.000 0.00 0.00 39.88 4.35
2842 3785 5.043903 AGTGATTCATCGAATAGTTGTCGG 58.956 41.667 0.00 0.00 39.01 4.79
2843 3786 4.209288 GTGATTCATCGAATAGTTGTCGGG 59.791 45.833 0.00 0.00 39.01 5.14
2844 3787 2.218953 TCATCGAATAGTTGTCGGGC 57.781 50.000 0.00 0.00 39.01 6.13
2845 3788 1.478916 TCATCGAATAGTTGTCGGGCA 59.521 47.619 0.00 0.00 39.01 5.36
2846 3789 2.102420 TCATCGAATAGTTGTCGGGCAT 59.898 45.455 0.00 0.00 39.01 4.40
2847 3790 1.934589 TCGAATAGTTGTCGGGCATG 58.065 50.000 0.00 0.00 39.01 4.06
2848 3791 0.937304 CGAATAGTTGTCGGGCATGG 59.063 55.000 0.00 0.00 34.85 3.66
2849 3792 1.742411 CGAATAGTTGTCGGGCATGGT 60.742 52.381 0.00 0.00 34.85 3.55
2850 3793 1.670811 GAATAGTTGTCGGGCATGGTG 59.329 52.381 0.00 0.00 0.00 4.17
2851 3794 0.908910 ATAGTTGTCGGGCATGGTGA 59.091 50.000 0.00 0.00 0.00 4.02
2852 3795 0.249120 TAGTTGTCGGGCATGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
2853 3796 1.003839 GTTGTCGGGCATGGTGAGA 60.004 57.895 0.00 0.00 0.00 3.27
2854 3797 0.605319 GTTGTCGGGCATGGTGAGAA 60.605 55.000 0.00 0.00 0.00 2.87
2855 3798 0.327924 TTGTCGGGCATGGTGAGAAT 59.672 50.000 0.00 0.00 0.00 2.40
2856 3799 1.199615 TGTCGGGCATGGTGAGAATA 58.800 50.000 0.00 0.00 0.00 1.75
2857 3800 1.138859 TGTCGGGCATGGTGAGAATAG 59.861 52.381 0.00 0.00 0.00 1.73
2858 3801 0.106708 TCGGGCATGGTGAGAATAGC 59.893 55.000 0.00 0.00 0.00 2.97
2859 3802 0.179048 CGGGCATGGTGAGAATAGCA 60.179 55.000 0.00 0.00 0.00 3.49
2860 3803 1.602311 GGGCATGGTGAGAATAGCAG 58.398 55.000 0.00 0.00 0.00 4.24
2861 3804 1.133976 GGGCATGGTGAGAATAGCAGT 60.134 52.381 0.00 0.00 0.00 4.40
2862 3805 2.104792 GGGCATGGTGAGAATAGCAGTA 59.895 50.000 0.00 0.00 0.00 2.74
2863 3806 3.397482 GGCATGGTGAGAATAGCAGTAG 58.603 50.000 0.00 0.00 0.00 2.57
2864 3807 2.805099 GCATGGTGAGAATAGCAGTAGC 59.195 50.000 0.00 0.00 42.56 3.58
2881 3824 3.770040 CGGATGGCACCTGTCGGA 61.770 66.667 0.00 0.00 0.00 4.55
2882 3825 2.187946 GGATGGCACCTGTCGGAG 59.812 66.667 0.00 0.00 0.00 4.63
2883 3826 2.512515 GATGGCACCTGTCGGAGC 60.513 66.667 0.00 0.00 44.99 4.70
2884 3827 4.457496 ATGGCACCTGTCGGAGCG 62.457 66.667 0.00 0.00 46.45 5.03
2888 3831 4.778415 CACCTGTCGGAGCGGTCG 62.778 72.222 8.77 4.37 0.00 4.79
2891 3834 4.180946 CTGTCGGAGCGGTCGGAG 62.181 72.222 23.03 10.46 33.01 4.63
2896 3839 3.827898 GGAGCGGTCGGAGGACAG 61.828 72.222 8.77 0.00 45.28 3.51
2897 3840 3.827898 GAGCGGTCGGAGGACAGG 61.828 72.222 0.00 0.00 45.28 4.00
2898 3841 4.361971 AGCGGTCGGAGGACAGGA 62.362 66.667 0.00 0.00 45.28 3.86
2899 3842 3.379445 GCGGTCGGAGGACAGGAA 61.379 66.667 0.00 0.00 45.28 3.36
2900 3843 2.722201 GCGGTCGGAGGACAGGAAT 61.722 63.158 0.00 0.00 45.28 3.01
2901 3844 1.898154 CGGTCGGAGGACAGGAATT 59.102 57.895 0.00 0.00 45.28 2.17
2902 3845 1.108776 CGGTCGGAGGACAGGAATTA 58.891 55.000 0.00 0.00 45.28 1.40
2903 3846 1.479323 CGGTCGGAGGACAGGAATTAA 59.521 52.381 0.00 0.00 45.28 1.40
2904 3847 2.093869 CGGTCGGAGGACAGGAATTAAA 60.094 50.000 0.00 0.00 45.28 1.52
2905 3848 3.268330 GGTCGGAGGACAGGAATTAAAC 58.732 50.000 0.00 0.00 45.28 2.01
2906 3849 2.928116 GTCGGAGGACAGGAATTAAACG 59.072 50.000 0.00 0.00 42.91 3.60
2907 3850 2.093869 TCGGAGGACAGGAATTAAACGG 60.094 50.000 0.00 0.00 0.00 4.44
2908 3851 2.093869 CGGAGGACAGGAATTAAACGGA 60.094 50.000 0.00 0.00 0.00 4.69
2909 3852 3.532542 GGAGGACAGGAATTAAACGGAG 58.467 50.000 0.00 0.00 0.00 4.63
2910 3853 3.197116 GGAGGACAGGAATTAAACGGAGA 59.803 47.826 0.00 0.00 0.00 3.71
2911 3854 4.182339 GAGGACAGGAATTAAACGGAGAC 58.818 47.826 0.00 0.00 0.00 3.36
2912 3855 3.581332 AGGACAGGAATTAAACGGAGACA 59.419 43.478 0.00 0.00 0.00 3.41
2913 3856 3.933332 GGACAGGAATTAAACGGAGACAG 59.067 47.826 0.00 0.00 0.00 3.51
2914 3857 4.322499 GGACAGGAATTAAACGGAGACAGA 60.322 45.833 0.00 0.00 0.00 3.41
2915 3858 4.822026 ACAGGAATTAAACGGAGACAGAG 58.178 43.478 0.00 0.00 0.00 3.35
2916 3859 4.184629 CAGGAATTAAACGGAGACAGAGG 58.815 47.826 0.00 0.00 0.00 3.69
2917 3860 4.081642 CAGGAATTAAACGGAGACAGAGGA 60.082 45.833 0.00 0.00 0.00 3.71
2918 3861 4.160626 AGGAATTAAACGGAGACAGAGGAG 59.839 45.833 0.00 0.00 0.00 3.69
2919 3862 4.159879 GGAATTAAACGGAGACAGAGGAGA 59.840 45.833 0.00 0.00 0.00 3.71
2920 3863 5.337330 GGAATTAAACGGAGACAGAGGAGAA 60.337 44.000 0.00 0.00 0.00 2.87
2921 3864 4.785511 TTAAACGGAGACAGAGGAGAAG 57.214 45.455 0.00 0.00 0.00 2.85
2922 3865 0.892063 AACGGAGACAGAGGAGAAGC 59.108 55.000 0.00 0.00 0.00 3.86
2923 3866 1.309499 ACGGAGACAGAGGAGAAGCG 61.309 60.000 0.00 0.00 0.00 4.68
2924 3867 1.813192 GGAGACAGAGGAGAAGCGG 59.187 63.158 0.00 0.00 0.00 5.52
2925 3868 1.140804 GAGACAGAGGAGAAGCGGC 59.859 63.158 0.00 0.00 0.00 6.53
2926 3869 2.202676 GACAGAGGAGAAGCGGCG 60.203 66.667 0.51 0.51 0.00 6.46
2927 3870 3.708220 GACAGAGGAGAAGCGGCGG 62.708 68.421 9.78 0.00 0.00 6.13
2928 3871 4.521062 CAGAGGAGAAGCGGCGGG 62.521 72.222 9.78 0.00 0.00 6.13
2951 3894 4.020617 CTGAAGCGCTGGGGGTGA 62.021 66.667 12.58 0.00 0.00 4.02
2952 3895 4.329545 TGAAGCGCTGGGGGTGAC 62.330 66.667 12.58 0.00 0.00 3.67
2958 3901 4.083862 GCTGGGGGTGACGGAGAC 62.084 72.222 0.00 0.00 0.00 3.36
2973 3916 3.134021 GGAGACGTAGAGTTTCGGAAG 57.866 52.381 0.00 0.00 35.03 3.46
2974 3917 2.159407 GGAGACGTAGAGTTTCGGAAGG 60.159 54.545 0.00 0.00 35.03 3.46
2975 3918 1.817447 AGACGTAGAGTTTCGGAAGGG 59.183 52.381 0.00 0.00 0.00 3.95
2976 3919 0.893447 ACGTAGAGTTTCGGAAGGGG 59.107 55.000 0.00 0.00 0.00 4.79
2977 3920 0.893447 CGTAGAGTTTCGGAAGGGGT 59.107 55.000 0.00 0.00 0.00 4.95
2978 3921 1.403780 CGTAGAGTTTCGGAAGGGGTG 60.404 57.143 0.00 0.00 0.00 4.61
2979 3922 1.622312 GTAGAGTTTCGGAAGGGGTGT 59.378 52.381 0.00 0.00 0.00 4.16
2980 3923 0.396811 AGAGTTTCGGAAGGGGTGTG 59.603 55.000 0.00 0.00 0.00 3.82
2981 3924 0.605589 GAGTTTCGGAAGGGGTGTGG 60.606 60.000 0.00 0.00 0.00 4.17
2982 3925 1.149854 GTTTCGGAAGGGGTGTGGT 59.850 57.895 0.00 0.00 0.00 4.16
2983 3926 1.149627 TTTCGGAAGGGGTGTGGTG 59.850 57.895 0.00 0.00 0.00 4.17
2984 3927 1.637724 TTTCGGAAGGGGTGTGGTGT 61.638 55.000 0.00 0.00 0.00 4.16
2985 3928 2.281484 CGGAAGGGGTGTGGTGTG 60.281 66.667 0.00 0.00 0.00 3.82
2986 3929 2.115266 GGAAGGGGTGTGGTGTGG 59.885 66.667 0.00 0.00 0.00 4.17
2987 3930 2.597510 GAAGGGGTGTGGTGTGGC 60.598 66.667 0.00 0.00 0.00 5.01
2988 3931 4.579384 AAGGGGTGTGGTGTGGCG 62.579 66.667 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.213094 AACGACTTTGCCTCGTCACG 61.213 55.000 0.00 0.00 43.49 4.35
74 76 2.029838 AAACCATCGCACTGAGATCC 57.970 50.000 0.00 0.00 0.00 3.36
81 83 2.157834 TGAACGTAAACCATCGCACT 57.842 45.000 0.00 0.00 0.00 4.40
86 88 3.932710 TGCTCTCATGAACGTAAACCATC 59.067 43.478 0.00 0.00 0.00 3.51
117 119 1.484653 GCCAGTGGAAGGTTTTGGTTT 59.515 47.619 15.20 0.00 0.00 3.27
120 122 2.162681 CTAGCCAGTGGAAGGTTTTGG 58.837 52.381 15.20 0.00 0.00 3.28
135 137 2.280628 CTCCGGTGAACATTTCTAGCC 58.719 52.381 0.00 0.00 0.00 3.93
171 173 2.981859 ACATCCGTCGGCTTTTATCT 57.018 45.000 6.34 0.00 0.00 1.98
200 202 1.462432 TTGTGCCTACTCCCACCCA 60.462 57.895 0.00 0.00 0.00 4.51
201 203 1.002502 GTTGTGCCTACTCCCACCC 60.003 63.158 0.00 0.00 0.00 4.61
204 206 3.955145 CATGTTGTGCCTACTCCCA 57.045 52.632 0.00 0.00 0.00 4.37
229 231 0.537188 ACGTCCTCCATCATGACACC 59.463 55.000 0.00 0.00 0.00 4.16
260 262 3.318839 TCACAATTTTGCTCTTCACCTGG 59.681 43.478 0.00 0.00 0.00 4.45
261 263 4.543692 CTCACAATTTTGCTCTTCACCTG 58.456 43.478 0.00 0.00 0.00 4.00
265 267 7.394077 TCATATTCCTCACAATTTTGCTCTTCA 59.606 33.333 0.00 0.00 0.00 3.02
330 332 2.806818 GCGACATCTCGGTCTGTCTATA 59.193 50.000 9.41 0.00 40.53 1.31
335 337 0.532573 AATGCGACATCTCGGTCTGT 59.467 50.000 0.00 0.00 40.53 3.41
342 344 3.307242 GGTGTCTACAAATGCGACATCTC 59.693 47.826 8.68 0.00 39.55 2.75
350 352 4.963276 TTATGCTGGTGTCTACAAATGC 57.037 40.909 0.00 0.00 0.00 3.56
360 362 6.437928 CGCATACATATTTTTATGCTGGTGT 58.562 36.000 11.06 0.00 45.67 4.16
361 363 5.343058 GCGCATACATATTTTTATGCTGGTG 59.657 40.000 0.30 0.06 45.67 4.17
364 366 6.989796 TTGCGCATACATATTTTTATGCTG 57.010 33.333 12.75 7.04 45.67 4.41
382 384 3.858812 TCAAAGATTAATGTGCATTGCGC 59.141 39.130 15.18 15.18 42.89 6.09
383 385 4.858140 TGTCAAAGATTAATGTGCATTGCG 59.142 37.500 3.84 0.00 32.50 4.85
399 401 7.044510 CGCATGCAATTAATTCTACTGTCAAAG 60.045 37.037 19.57 0.00 0.00 2.77
476 497 4.806342 AAACTGCTAAAATGACGAACGT 57.194 36.364 0.00 0.00 0.00 3.99
501 523 2.684881 CAAGCTCAATCAAACGGCCTAT 59.315 45.455 0.00 0.00 0.00 2.57
502 524 2.083774 CAAGCTCAATCAAACGGCCTA 58.916 47.619 0.00 0.00 0.00 3.93
503 525 0.883833 CAAGCTCAATCAAACGGCCT 59.116 50.000 0.00 0.00 0.00 5.19
504 526 0.598065 ACAAGCTCAATCAAACGGCC 59.402 50.000 0.00 0.00 0.00 6.13
506 528 3.963665 TCAAACAAGCTCAATCAAACGG 58.036 40.909 0.00 0.00 0.00 4.44
507 529 4.383649 CCATCAAACAAGCTCAATCAAACG 59.616 41.667 0.00 0.00 0.00 3.60
508 530 5.291971 ACCATCAAACAAGCTCAATCAAAC 58.708 37.500 0.00 0.00 0.00 2.93
511 533 4.796946 GCAACCATCAAACAAGCTCAATCA 60.797 41.667 0.00 0.00 0.00 2.57
585 617 1.953559 ATGTCGCCTAATCGCAACAT 58.046 45.000 0.00 0.00 0.00 2.71
633 1041 5.107220 CCGACCTGTAATTAATAATCACGCC 60.107 44.000 0.00 0.00 0.00 5.68
635 1043 6.145048 GTCCCGACCTGTAATTAATAATCACG 59.855 42.308 0.00 0.00 0.00 4.35
637 1045 6.218019 CGTCCCGACCTGTAATTAATAATCA 58.782 40.000 0.00 0.00 0.00 2.57
638 1046 5.636543 CCGTCCCGACCTGTAATTAATAATC 59.363 44.000 0.00 0.00 0.00 1.75
639 1047 5.544650 CCGTCCCGACCTGTAATTAATAAT 58.455 41.667 0.00 0.00 0.00 1.28
640 1048 4.740334 GCCGTCCCGACCTGTAATTAATAA 60.740 45.833 0.00 0.00 0.00 1.40
641 1049 3.243839 GCCGTCCCGACCTGTAATTAATA 60.244 47.826 0.00 0.00 0.00 0.98
642 1050 2.484241 GCCGTCCCGACCTGTAATTAAT 60.484 50.000 0.00 0.00 0.00 1.40
643 1051 1.134729 GCCGTCCCGACCTGTAATTAA 60.135 52.381 0.00 0.00 0.00 1.40
644 1052 0.461135 GCCGTCCCGACCTGTAATTA 59.539 55.000 0.00 0.00 0.00 1.40
645 1053 1.219935 GCCGTCCCGACCTGTAATT 59.780 57.895 0.00 0.00 0.00 1.40
709 1145 4.142271 TGACTCTGCCGTTTGTTTCATTTT 60.142 37.500 0.00 0.00 0.00 1.82
710 1146 3.380004 TGACTCTGCCGTTTGTTTCATTT 59.620 39.130 0.00 0.00 0.00 2.32
711 1147 2.948979 TGACTCTGCCGTTTGTTTCATT 59.051 40.909 0.00 0.00 0.00 2.57
712 1148 2.571212 TGACTCTGCCGTTTGTTTCAT 58.429 42.857 0.00 0.00 0.00 2.57
743 1197 3.016474 GAGGTCAAGAAGCGCACGC 62.016 63.158 11.47 6.99 42.33 5.34
786 1246 0.953960 GAAGGGTAGCCGTTGTGGTG 60.954 60.000 5.06 0.00 41.21 4.17
787 1247 1.125711 AGAAGGGTAGCCGTTGTGGT 61.126 55.000 5.06 0.00 41.21 4.16
788 1248 0.036306 AAGAAGGGTAGCCGTTGTGG 59.964 55.000 5.06 0.00 42.50 4.17
789 1249 1.439679 GAAGAAGGGTAGCCGTTGTG 58.560 55.000 5.06 0.00 31.35 3.33
911 1450 1.270358 GGACGACTCTTCCTTGCTTGT 60.270 52.381 0.00 0.00 0.00 3.16
951 1490 1.552578 GGTTGGATTGGGTTGGGTAC 58.447 55.000 0.00 0.00 0.00 3.34
964 1503 3.198953 ATTTGGGGACGCGGTTGGA 62.199 57.895 12.47 0.00 0.00 3.53
971 1510 1.391933 GGGGATTGATTTGGGGACGC 61.392 60.000 0.00 0.00 0.00 5.19
972 1511 0.258774 AGGGGATTGATTTGGGGACG 59.741 55.000 0.00 0.00 0.00 4.79
973 1512 1.411644 GGAGGGGATTGATTTGGGGAC 60.412 57.143 0.00 0.00 0.00 4.46
974 1513 0.933700 GGAGGGGATTGATTTGGGGA 59.066 55.000 0.00 0.00 0.00 4.81
976 1515 0.105504 GGGGAGGGGATTGATTTGGG 60.106 60.000 0.00 0.00 0.00 4.12
978 1517 0.636101 TGGGGGAGGGGATTGATTTG 59.364 55.000 0.00 0.00 0.00 2.32
979 1518 1.505098 GATGGGGGAGGGGATTGATTT 59.495 52.381 0.00 0.00 0.00 2.17
980 1519 1.161603 GATGGGGGAGGGGATTGATT 58.838 55.000 0.00 0.00 0.00 2.57
982 1521 1.387347 GGATGGGGGAGGGGATTGA 60.387 63.158 0.00 0.00 0.00 2.57
983 1522 2.473365 GGGATGGGGGAGGGGATTG 61.473 68.421 0.00 0.00 0.00 2.67
984 1523 2.037238 GGGATGGGGGAGGGGATT 60.037 66.667 0.00 0.00 0.00 3.01
985 1524 4.223426 GGGGATGGGGGAGGGGAT 62.223 72.222 0.00 0.00 0.00 3.85
990 1529 2.743131 ATAAGTAGGGGATGGGGGAG 57.257 55.000 0.00 0.00 0.00 4.30
991 1530 3.014807 GGATATAAGTAGGGGATGGGGGA 59.985 52.174 0.00 0.00 0.00 4.81
992 1531 3.394645 GGATATAAGTAGGGGATGGGGG 58.605 54.545 0.00 0.00 0.00 5.40
993 1532 3.246721 TGGGATATAAGTAGGGGATGGGG 60.247 52.174 0.00 0.00 0.00 4.96
994 1533 3.780850 GTGGGATATAAGTAGGGGATGGG 59.219 52.174 0.00 0.00 0.00 4.00
995 1534 3.780850 GGTGGGATATAAGTAGGGGATGG 59.219 52.174 0.00 0.00 0.00 3.51
996 1535 4.699994 AGGTGGGATATAAGTAGGGGATG 58.300 47.826 0.00 0.00 0.00 3.51
1018 1557 2.032634 GGTGAGTGATTTGCGGCGA 61.033 57.895 12.98 0.00 0.00 5.54
1019 1558 2.480555 GGTGAGTGATTTGCGGCG 59.519 61.111 0.51 0.51 0.00 6.46
1020 1559 1.523154 TTGGGTGAGTGATTTGCGGC 61.523 55.000 0.00 0.00 0.00 6.53
1025 1564 2.827921 GCTGGATTTGGGTGAGTGATTT 59.172 45.455 0.00 0.00 0.00 2.17
1026 1565 2.450476 GCTGGATTTGGGTGAGTGATT 58.550 47.619 0.00 0.00 0.00 2.57
1027 1566 1.341383 GGCTGGATTTGGGTGAGTGAT 60.341 52.381 0.00 0.00 0.00 3.06
1028 1567 0.038166 GGCTGGATTTGGGTGAGTGA 59.962 55.000 0.00 0.00 0.00 3.41
1030 1569 1.384191 GGGCTGGATTTGGGTGAGT 59.616 57.895 0.00 0.00 0.00 3.41
1031 1570 0.967380 GTGGGCTGGATTTGGGTGAG 60.967 60.000 0.00 0.00 0.00 3.51
1045 1588 2.440980 GGCAGATTGGAGGTGGGC 60.441 66.667 0.00 0.00 0.00 5.36
1046 1589 1.225704 GAGGCAGATTGGAGGTGGG 59.774 63.158 0.00 0.00 0.00 4.61
1052 1595 4.838152 GCGGCGAGGCAGATTGGA 62.838 66.667 12.98 0.00 0.00 3.53
1070 1613 4.402528 TGGATGTGGTTCCCGGCG 62.403 66.667 0.00 0.00 34.67 6.46
1071 1614 2.438434 CTGGATGTGGTTCCCGGC 60.438 66.667 0.00 0.00 34.67 6.13
1072 1615 2.438434 GCTGGATGTGGTTCCCGG 60.438 66.667 0.00 0.00 34.67 5.73
1075 1618 0.394352 ATTCGGCTGGATGTGGTTCC 60.394 55.000 0.00 0.00 36.24 3.62
1076 1619 1.017387 GATTCGGCTGGATGTGGTTC 58.983 55.000 0.00 0.00 0.00 3.62
1077 1620 0.394352 GGATTCGGCTGGATGTGGTT 60.394 55.000 0.00 0.00 0.00 3.67
1078 1621 1.224592 GGATTCGGCTGGATGTGGT 59.775 57.895 0.00 0.00 0.00 4.16
1080 1623 1.526917 GGGGATTCGGCTGGATGTG 60.527 63.158 0.00 0.00 0.00 3.21
1094 1849 3.940480 TGGTGGAGCTGAGGGGGA 61.940 66.667 0.00 0.00 0.00 4.81
1096 1851 3.721706 GGTGGTGGAGCTGAGGGG 61.722 72.222 0.00 0.00 0.00 4.79
1100 1855 2.527624 AGCTGGTGGTGGAGCTGA 60.528 61.111 0.00 0.00 44.03 4.26
1101 1856 2.046507 GAGCTGGTGGTGGAGCTG 60.047 66.667 0.00 0.00 45.72 4.24
1103 1858 2.267324 GAGAGCTGGTGGTGGAGC 59.733 66.667 0.00 0.00 35.28 4.70
1104 1859 1.979155 TCGAGAGCTGGTGGTGGAG 60.979 63.158 0.00 0.00 0.00 3.86
1116 1896 1.437986 GAACCCATCCCGTCGAGAG 59.562 63.158 0.00 0.00 0.00 3.20
1117 1897 2.412323 CGAACCCATCCCGTCGAGA 61.412 63.158 0.00 0.00 0.00 4.04
1663 2443 4.827087 CAGCTGATCCTGGCGCGT 62.827 66.667 8.42 0.00 0.00 6.01
1744 2527 0.744771 GGCGGAATCAGAACCAGACC 60.745 60.000 0.00 0.00 0.00 3.85
1760 2543 1.653232 TCGAATCGAATCGACGGCG 60.653 57.895 21.03 2.87 46.12 6.46
1802 2592 3.919304 AGAGATGAGATGAGATCCCCA 57.081 47.619 0.00 0.00 0.00 4.96
1811 2601 7.501559 AGAGAAGAGAAGAGAAGAGATGAGATG 59.498 40.741 0.00 0.00 0.00 2.90
1844 2654 0.173255 CATCCCGCAACCAACCAATC 59.827 55.000 0.00 0.00 0.00 2.67
1845 2655 1.887344 GCATCCCGCAACCAACCAAT 61.887 55.000 0.00 0.00 41.79 3.16
1914 2737 5.593010 ACCAGATGCGAAAATCTCTACTAC 58.407 41.667 0.00 0.00 34.60 2.73
1935 2758 2.095212 GCAAAGCTAACAAGGCAGTACC 60.095 50.000 0.00 0.00 39.61 3.34
1943 2776 6.255670 TCGATAGTATGTGCAAAGCTAACAAG 59.744 38.462 0.00 0.00 37.40 3.16
1983 2831 5.654650 TCCTGCTAACAAAGAACCAAAAGAA 59.345 36.000 0.00 0.00 0.00 2.52
2014 2868 9.494271 CAACTAGTAGTAATAGTATACGGTGGA 57.506 37.037 10.51 0.00 33.15 4.02
2029 2883 6.483307 ACCGATATACGCAACAACTAGTAGTA 59.517 38.462 2.50 0.00 41.07 1.82
2030 2884 5.297776 ACCGATATACGCAACAACTAGTAGT 59.702 40.000 0.00 0.00 41.07 2.73
2031 2885 5.755813 ACCGATATACGCAACAACTAGTAG 58.244 41.667 0.00 0.00 41.07 2.57
2120 2998 2.533266 TCCAACAGCAGAGTCTGAAC 57.467 50.000 24.55 6.99 37.51 3.18
2173 3059 2.161410 CCGGAAGAAATTGCGATGAACA 59.839 45.455 0.00 0.00 38.02 3.18
2176 3062 2.394930 TCCGGAAGAAATTGCGATGA 57.605 45.000 0.00 0.00 38.02 2.92
2193 3079 3.066203 ACACGAAAAGTTGTCATGGTTCC 59.934 43.478 0.00 0.00 0.00 3.62
2217 3104 1.866237 CGTGTGGATTTGGTCACGG 59.134 57.895 8.36 0.00 46.12 4.94
2219 3106 1.169661 TGCCGTGTGGATTTGGTCAC 61.170 55.000 0.00 0.00 37.49 3.67
2230 3117 2.801162 CGACTCGACTGCCGTGTG 60.801 66.667 0.00 0.00 43.90 3.82
2231 3118 2.967473 CTCGACTCGACTGCCGTGT 61.967 63.158 0.00 0.00 46.14 4.49
2245 3132 1.536922 GCGAAATCATCCAGCTCTCGA 60.537 52.381 0.00 0.00 0.00 4.04
2246 3133 0.857935 GCGAAATCATCCAGCTCTCG 59.142 55.000 0.00 0.00 0.00 4.04
2247 3134 1.596727 GTGCGAAATCATCCAGCTCTC 59.403 52.381 0.00 0.00 0.00 3.20
2250 3137 0.108186 TCGTGCGAAATCATCCAGCT 60.108 50.000 0.00 0.00 0.00 4.24
2251 3138 0.726827 TTCGTGCGAAATCATCCAGC 59.273 50.000 4.43 0.00 0.00 4.85
2252 3139 3.419915 CTTTTCGTGCGAAATCATCCAG 58.580 45.455 18.46 9.44 42.71 3.86
2253 3140 2.414029 GCTTTTCGTGCGAAATCATCCA 60.414 45.455 18.46 4.14 42.71 3.41
2254 3141 2.177173 GCTTTTCGTGCGAAATCATCC 58.823 47.619 18.46 4.57 42.71 3.51
2258 3145 0.110373 ACGGCTTTTCGTGCGAAATC 60.110 50.000 18.46 13.46 42.71 2.17
2312 3199 2.649034 GTCCCACTCGCGTCTCAA 59.351 61.111 5.77 0.00 0.00 3.02
2313 3200 3.733960 CGTCCCACTCGCGTCTCA 61.734 66.667 5.77 0.00 0.00 3.27
2314 3201 3.264866 AACGTCCCACTCGCGTCTC 62.265 63.158 5.77 0.00 37.92 3.36
2325 3212 1.024579 ACAATCGCCATCAACGTCCC 61.025 55.000 0.00 0.00 0.00 4.46
2354 3241 1.401018 GGAAAACACATACGCTGGCAC 60.401 52.381 0.00 0.00 0.00 5.01
2362 3249 5.164606 ACTGAACAACGGAAAACACATAC 57.835 39.130 0.00 0.00 0.00 2.39
2363 3250 5.574082 CAACTGAACAACGGAAAACACATA 58.426 37.500 0.00 0.00 0.00 2.29
2378 3265 4.719616 GCCGACGCGCAACTGAAC 62.720 66.667 5.73 0.00 0.00 3.18
2390 3277 1.736681 AGTACTCTAGTTGACGCCGAC 59.263 52.381 0.00 0.00 0.00 4.79
2395 3282 8.796278 GTTAATTTGCTAGTACTCTAGTTGACG 58.204 37.037 0.00 0.00 43.86 4.35
2399 3286 7.275123 GCGTGTTAATTTGCTAGTACTCTAGTT 59.725 37.037 0.00 0.00 43.86 2.24
2404 3291 4.259690 CGGCGTGTTAATTTGCTAGTACTC 60.260 45.833 0.00 0.00 0.00 2.59
2409 3296 2.927477 TCTCGGCGTGTTAATTTGCTAG 59.073 45.455 6.85 0.00 0.00 3.42
2410 3297 2.927477 CTCTCGGCGTGTTAATTTGCTA 59.073 45.455 6.85 0.00 0.00 3.49
2412 3299 1.730064 TCTCTCGGCGTGTTAATTTGC 59.270 47.619 6.85 0.00 0.00 3.68
2413 3300 3.678072 TCTTCTCTCGGCGTGTTAATTTG 59.322 43.478 6.85 0.00 0.00 2.32
2414 3301 3.921677 TCTTCTCTCGGCGTGTTAATTT 58.078 40.909 6.85 0.00 0.00 1.82
2415 3302 3.512680 CTCTTCTCTCGGCGTGTTAATT 58.487 45.455 6.85 0.00 0.00 1.40
2416 3303 2.735762 GCTCTTCTCTCGGCGTGTTAAT 60.736 50.000 6.85 0.00 0.00 1.40
2417 3304 1.402456 GCTCTTCTCTCGGCGTGTTAA 60.402 52.381 6.85 2.86 0.00 2.01
2418 3305 0.170561 GCTCTTCTCTCGGCGTGTTA 59.829 55.000 6.85 0.00 0.00 2.41
2431 3318 1.074752 CTGCTCGAAACCTGCTCTTC 58.925 55.000 0.00 0.00 0.00 2.87
2453 3340 0.323629 TTCGATTTGGACGCTTCCCT 59.676 50.000 6.80 0.00 42.01 4.20
2454 3341 0.446616 GTTCGATTTGGACGCTTCCC 59.553 55.000 6.80 0.00 42.01 3.97
2467 3355 1.513158 CTCGCTCACCTGGTTCGAT 59.487 57.895 13.59 0.00 0.00 3.59
2469 3357 2.811317 GCTCGCTCACCTGGTTCG 60.811 66.667 0.00 1.30 0.00 3.95
2479 3367 1.852942 TTCATATTCACGGCTCGCTC 58.147 50.000 0.00 0.00 0.00 5.03
2486 3374 2.348872 GCACGAGCATTCATATTCACGG 60.349 50.000 0.00 0.00 41.58 4.94
2494 3382 4.808077 CTAATGAAGCACGAGCATTCAT 57.192 40.909 18.93 18.93 43.72 2.57
2562 3454 3.621805 TTCGTCCGCCTCTGCCAA 61.622 61.111 0.00 0.00 0.00 4.52
2573 3465 1.925185 GCCACTTAATCTCGTTCGTCC 59.075 52.381 0.00 0.00 0.00 4.79
2622 3514 2.219458 CTAGTGCAAGCATCCATCCAG 58.781 52.381 0.00 0.00 0.00 3.86
2634 3526 5.294356 ACTCAACGAAACATACTAGTGCAA 58.706 37.500 5.39 0.00 0.00 4.08
2635 3527 4.878439 ACTCAACGAAACATACTAGTGCA 58.122 39.130 5.39 0.00 0.00 4.57
2636 3528 5.404366 TCAACTCAACGAAACATACTAGTGC 59.596 40.000 5.39 0.00 0.00 4.40
2639 3531 6.157211 ACCTCAACTCAACGAAACATACTAG 58.843 40.000 0.00 0.00 0.00 2.57
2640 3532 6.092955 ACCTCAACTCAACGAAACATACTA 57.907 37.500 0.00 0.00 0.00 1.82
2641 3533 4.957296 ACCTCAACTCAACGAAACATACT 58.043 39.130 0.00 0.00 0.00 2.12
2642 3534 5.164119 CGTACCTCAACTCAACGAAACATAC 60.164 44.000 0.00 0.00 35.66 2.39
2643 3535 4.919168 CGTACCTCAACTCAACGAAACATA 59.081 41.667 0.00 0.00 35.66 2.29
2673 3616 3.470709 CAATCCAACGGATACAGAGCAT 58.529 45.455 0.00 0.00 42.27 3.79
2674 3617 2.905075 CAATCCAACGGATACAGAGCA 58.095 47.619 0.00 0.00 42.27 4.26
2675 3618 1.599542 GCAATCCAACGGATACAGAGC 59.400 52.381 0.00 0.00 42.27 4.09
2676 3619 2.609459 GTGCAATCCAACGGATACAGAG 59.391 50.000 0.00 0.00 42.27 3.35
2677 3620 2.027653 TGTGCAATCCAACGGATACAGA 60.028 45.455 0.00 0.00 42.27 3.41
2678 3621 2.355197 TGTGCAATCCAACGGATACAG 58.645 47.619 0.00 0.00 42.27 2.74
2679 3622 2.481289 TGTGCAATCCAACGGATACA 57.519 45.000 0.00 0.00 42.27 2.29
2680 3623 2.033299 CCATGTGCAATCCAACGGATAC 59.967 50.000 0.00 0.00 42.27 2.24
2681 3624 2.296792 CCATGTGCAATCCAACGGATA 58.703 47.619 0.00 0.00 42.27 2.59
2682 3625 1.105457 CCATGTGCAATCCAACGGAT 58.895 50.000 0.00 0.00 45.46 4.18
2722 3665 0.996462 ATTGACACGGACGTATTGCG 59.004 50.000 0.00 0.00 46.25 4.85
2724 3667 5.051907 GCTAGTAATTGACACGGACGTATTG 60.052 44.000 0.00 0.00 0.00 1.90
2738 3681 1.213094 CGTCCGGCGGCTAGTAATTG 61.213 60.000 23.83 0.00 36.85 2.32
2748 3691 2.090524 GTGTTAAGTCGTCCGGCGG 61.091 63.158 22.51 22.51 41.72 6.13
2749 3692 1.372004 TGTGTTAAGTCGTCCGGCG 60.372 57.895 11.37 11.37 43.01 6.46
2750 3693 0.319297 AGTGTGTTAAGTCGTCCGGC 60.319 55.000 0.00 0.00 0.00 6.13
2751 3694 1.415374 CAGTGTGTTAAGTCGTCCGG 58.585 55.000 0.00 0.00 0.00 5.14
2752 3695 0.782384 GCAGTGTGTTAAGTCGTCCG 59.218 55.000 0.00 0.00 0.00 4.79
2753 3696 2.150397 AGCAGTGTGTTAAGTCGTCC 57.850 50.000 0.00 0.00 0.00 4.79
2754 3697 3.898529 ACTAGCAGTGTGTTAAGTCGTC 58.101 45.455 0.00 0.00 0.00 4.20
2755 3698 5.640189 ATACTAGCAGTGTGTTAAGTCGT 57.360 39.130 0.00 0.00 0.00 4.34
2782 3725 8.683615 ACAGTTTTCCTTCTTTCGATTTAAAGT 58.316 29.630 0.00 0.00 37.65 2.66
2783 3726 9.516314 AACAGTTTTCCTTCTTTCGATTTAAAG 57.484 29.630 0.00 0.00 37.73 1.85
2784 3727 9.863845 AAACAGTTTTCCTTCTTTCGATTTAAA 57.136 25.926 0.00 0.00 0.00 1.52
2785 3728 9.863845 AAAACAGTTTTCCTTCTTTCGATTTAA 57.136 25.926 5.37 0.00 0.00 1.52
2786 3729 9.863845 AAAAACAGTTTTCCTTCTTTCGATTTA 57.136 25.926 11.77 0.00 30.96 1.40
2787 3730 8.771920 AAAAACAGTTTTCCTTCTTTCGATTT 57.228 26.923 11.77 0.00 30.96 2.17
2788 3731 9.516314 CTAAAAACAGTTTTCCTTCTTTCGATT 57.484 29.630 11.77 0.00 38.01 3.34
2789 3732 7.648112 GCTAAAAACAGTTTTCCTTCTTTCGAT 59.352 33.333 11.77 0.00 38.01 3.59
2790 3733 6.970613 GCTAAAAACAGTTTTCCTTCTTTCGA 59.029 34.615 11.77 0.00 38.01 3.71
2791 3734 6.972901 AGCTAAAAACAGTTTTCCTTCTTTCG 59.027 34.615 11.77 0.00 38.01 3.46
2792 3735 7.435488 GGAGCTAAAAACAGTTTTCCTTCTTTC 59.565 37.037 11.77 4.48 38.01 2.62
2793 3736 7.093509 TGGAGCTAAAAACAGTTTTCCTTCTTT 60.094 33.333 11.77 0.00 38.01 2.52
2794 3737 6.379988 TGGAGCTAAAAACAGTTTTCCTTCTT 59.620 34.615 11.77 0.00 38.01 2.52
2795 3738 5.891551 TGGAGCTAAAAACAGTTTTCCTTCT 59.108 36.000 11.77 7.02 38.01 2.85
2796 3739 6.144078 TGGAGCTAAAAACAGTTTTCCTTC 57.856 37.500 11.77 8.16 38.01 3.46
2797 3740 5.656859 ACTGGAGCTAAAAACAGTTTTCCTT 59.343 36.000 11.77 0.00 41.03 3.36
2798 3741 5.067805 CACTGGAGCTAAAAACAGTTTTCCT 59.932 40.000 11.77 8.60 41.85 3.36
2799 3742 5.067283 TCACTGGAGCTAAAAACAGTTTTCC 59.933 40.000 11.77 8.94 41.85 3.13
2800 3743 6.131544 TCACTGGAGCTAAAAACAGTTTTC 57.868 37.500 11.77 0.12 41.85 2.29
2801 3744 6.715347 ATCACTGGAGCTAAAAACAGTTTT 57.285 33.333 5.37 5.37 41.85 2.43
2802 3745 6.321181 TGAATCACTGGAGCTAAAAACAGTTT 59.679 34.615 0.00 0.00 41.85 2.66
2803 3746 5.827797 TGAATCACTGGAGCTAAAAACAGTT 59.172 36.000 0.00 0.00 41.85 3.16
2804 3747 5.376625 TGAATCACTGGAGCTAAAAACAGT 58.623 37.500 0.00 0.00 44.36 3.55
2805 3748 5.947228 TGAATCACTGGAGCTAAAAACAG 57.053 39.130 0.00 0.00 37.01 3.16
2806 3749 5.122239 CGATGAATCACTGGAGCTAAAAACA 59.878 40.000 0.00 0.00 0.00 2.83
2807 3750 5.351465 TCGATGAATCACTGGAGCTAAAAAC 59.649 40.000 0.00 0.00 0.00 2.43
2808 3751 5.487433 TCGATGAATCACTGGAGCTAAAAA 58.513 37.500 0.00 0.00 0.00 1.94
2809 3752 5.084818 TCGATGAATCACTGGAGCTAAAA 57.915 39.130 0.00 0.00 0.00 1.52
2810 3753 4.736126 TCGATGAATCACTGGAGCTAAA 57.264 40.909 0.00 0.00 0.00 1.85
2811 3754 4.736126 TTCGATGAATCACTGGAGCTAA 57.264 40.909 0.00 0.00 0.00 3.09
2812 3755 4.944619 ATTCGATGAATCACTGGAGCTA 57.055 40.909 0.00 0.00 0.00 3.32
2813 3756 3.834489 ATTCGATGAATCACTGGAGCT 57.166 42.857 0.00 0.00 0.00 4.09
2814 3757 4.626042 ACTATTCGATGAATCACTGGAGC 58.374 43.478 0.00 0.00 33.95 4.70
2815 3758 6.045318 ACAACTATTCGATGAATCACTGGAG 58.955 40.000 0.00 0.00 33.95 3.86
2816 3759 5.977635 ACAACTATTCGATGAATCACTGGA 58.022 37.500 0.00 0.00 33.95 3.86
2817 3760 5.051441 CGACAACTATTCGATGAATCACTGG 60.051 44.000 0.00 0.00 38.85 4.00
2818 3761 5.051441 CCGACAACTATTCGATGAATCACTG 60.051 44.000 0.00 0.00 38.85 3.66
2819 3762 5.043903 CCGACAACTATTCGATGAATCACT 58.956 41.667 0.00 0.00 38.85 3.41
2820 3763 4.209288 CCCGACAACTATTCGATGAATCAC 59.791 45.833 0.00 0.00 38.85 3.06
2821 3764 4.368315 CCCGACAACTATTCGATGAATCA 58.632 43.478 0.00 0.00 38.85 2.57
2822 3765 3.184581 GCCCGACAACTATTCGATGAATC 59.815 47.826 0.00 0.00 38.85 2.52
2823 3766 3.131396 GCCCGACAACTATTCGATGAAT 58.869 45.455 0.00 0.00 38.85 2.57
2824 3767 2.093921 TGCCCGACAACTATTCGATGAA 60.094 45.455 0.00 0.00 38.85 2.57
2825 3768 1.478916 TGCCCGACAACTATTCGATGA 59.521 47.619 0.00 0.00 38.85 2.92
2826 3769 1.934589 TGCCCGACAACTATTCGATG 58.065 50.000 0.00 0.00 38.85 3.84
2827 3770 2.483876 CATGCCCGACAACTATTCGAT 58.516 47.619 0.00 0.00 38.85 3.59
2828 3771 1.472552 CCATGCCCGACAACTATTCGA 60.473 52.381 0.00 0.00 38.85 3.71
2829 3772 0.937304 CCATGCCCGACAACTATTCG 59.063 55.000 0.00 0.00 36.20 3.34
2830 3773 1.670811 CACCATGCCCGACAACTATTC 59.329 52.381 0.00 0.00 0.00 1.75
2831 3774 1.280710 TCACCATGCCCGACAACTATT 59.719 47.619 0.00 0.00 0.00 1.73
2832 3775 0.908910 TCACCATGCCCGACAACTAT 59.091 50.000 0.00 0.00 0.00 2.12
2833 3776 0.249120 CTCACCATGCCCGACAACTA 59.751 55.000 0.00 0.00 0.00 2.24
2834 3777 1.003355 CTCACCATGCCCGACAACT 60.003 57.895 0.00 0.00 0.00 3.16
2835 3778 0.605319 TTCTCACCATGCCCGACAAC 60.605 55.000 0.00 0.00 0.00 3.32
2836 3779 0.327924 ATTCTCACCATGCCCGACAA 59.672 50.000 0.00 0.00 0.00 3.18
2837 3780 1.138859 CTATTCTCACCATGCCCGACA 59.861 52.381 0.00 0.00 0.00 4.35
2838 3781 1.871080 CTATTCTCACCATGCCCGAC 58.129 55.000 0.00 0.00 0.00 4.79
2839 3782 0.106708 GCTATTCTCACCATGCCCGA 59.893 55.000 0.00 0.00 0.00 5.14
2840 3783 0.179048 TGCTATTCTCACCATGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
2841 3784 1.133976 ACTGCTATTCTCACCATGCCC 60.134 52.381 0.00 0.00 0.00 5.36
2842 3785 2.338577 ACTGCTATTCTCACCATGCC 57.661 50.000 0.00 0.00 0.00 4.40
2843 3786 2.805099 GCTACTGCTATTCTCACCATGC 59.195 50.000 0.00 0.00 36.03 4.06
2844 3787 3.055591 CGCTACTGCTATTCTCACCATG 58.944 50.000 0.00 0.00 36.97 3.66
2845 3788 2.036475 CCGCTACTGCTATTCTCACCAT 59.964 50.000 0.00 0.00 36.97 3.55
2846 3789 1.409064 CCGCTACTGCTATTCTCACCA 59.591 52.381 0.00 0.00 36.97 4.17
2847 3790 1.681793 TCCGCTACTGCTATTCTCACC 59.318 52.381 0.00 0.00 36.97 4.02
2848 3791 3.312828 CATCCGCTACTGCTATTCTCAC 58.687 50.000 0.00 0.00 36.97 3.51
2849 3792 2.297315 CCATCCGCTACTGCTATTCTCA 59.703 50.000 0.00 0.00 36.97 3.27
2850 3793 2.928731 GCCATCCGCTACTGCTATTCTC 60.929 54.545 0.00 0.00 36.97 2.87
2851 3794 1.001406 GCCATCCGCTACTGCTATTCT 59.999 52.381 0.00 0.00 36.97 2.40
2852 3795 1.270305 TGCCATCCGCTACTGCTATTC 60.270 52.381 0.00 0.00 38.78 1.75
2853 3796 0.758734 TGCCATCCGCTACTGCTATT 59.241 50.000 0.00 0.00 38.78 1.73
2854 3797 0.034059 GTGCCATCCGCTACTGCTAT 59.966 55.000 0.00 0.00 38.78 2.97
2855 3798 1.441729 GTGCCATCCGCTACTGCTA 59.558 57.895 0.00 0.00 38.78 3.49
2856 3799 2.187946 GTGCCATCCGCTACTGCT 59.812 61.111 0.00 0.00 38.78 4.24
2857 3800 2.897350 GGTGCCATCCGCTACTGC 60.897 66.667 0.00 0.00 38.78 4.40
2858 3801 1.522355 CAGGTGCCATCCGCTACTG 60.522 63.158 0.00 0.00 38.78 2.74
2859 3802 1.961180 GACAGGTGCCATCCGCTACT 61.961 60.000 0.00 0.00 38.78 2.57
2860 3803 1.521681 GACAGGTGCCATCCGCTAC 60.522 63.158 0.00 0.00 38.78 3.58
2861 3804 2.900273 GACAGGTGCCATCCGCTA 59.100 61.111 0.00 0.00 38.78 4.26
2862 3805 4.457496 CGACAGGTGCCATCCGCT 62.457 66.667 0.00 0.00 38.78 5.52
2864 3807 3.723235 CTCCGACAGGTGCCATCCG 62.723 68.421 0.00 0.00 39.05 4.18
2865 3808 2.187946 CTCCGACAGGTGCCATCC 59.812 66.667 0.00 0.00 39.05 3.51
2871 3814 4.778415 CGACCGCTCCGACAGGTG 62.778 72.222 0.00 0.00 38.57 4.00
2874 3817 4.180946 CTCCGACCGCTCCGACAG 62.181 72.222 0.00 0.00 0.00 3.51
2879 3822 3.827898 CTGTCCTCCGACCGCTCC 61.828 72.222 0.00 0.00 38.32 4.70
2880 3823 3.827898 CCTGTCCTCCGACCGCTC 61.828 72.222 0.00 0.00 38.32 5.03
2881 3824 3.881019 TTCCTGTCCTCCGACCGCT 62.881 63.158 0.00 0.00 38.32 5.52
2882 3825 2.240162 AATTCCTGTCCTCCGACCGC 62.240 60.000 0.00 0.00 38.32 5.68
2883 3826 1.108776 TAATTCCTGTCCTCCGACCG 58.891 55.000 0.00 0.00 38.32 4.79
2884 3827 3.268330 GTTTAATTCCTGTCCTCCGACC 58.732 50.000 0.00 0.00 38.32 4.79
2885 3828 2.928116 CGTTTAATTCCTGTCCTCCGAC 59.072 50.000 0.00 0.00 39.66 4.79
2886 3829 2.093869 CCGTTTAATTCCTGTCCTCCGA 60.094 50.000 0.00 0.00 0.00 4.55
2887 3830 2.093869 TCCGTTTAATTCCTGTCCTCCG 60.094 50.000 0.00 0.00 0.00 4.63
2888 3831 3.197116 TCTCCGTTTAATTCCTGTCCTCC 59.803 47.826 0.00 0.00 0.00 4.30
2889 3832 4.182339 GTCTCCGTTTAATTCCTGTCCTC 58.818 47.826 0.00 0.00 0.00 3.71
2890 3833 3.581332 TGTCTCCGTTTAATTCCTGTCCT 59.419 43.478 0.00 0.00 0.00 3.85
2891 3834 3.933332 CTGTCTCCGTTTAATTCCTGTCC 59.067 47.826 0.00 0.00 0.00 4.02
2892 3835 4.817517 TCTGTCTCCGTTTAATTCCTGTC 58.182 43.478 0.00 0.00 0.00 3.51
2893 3836 4.322801 CCTCTGTCTCCGTTTAATTCCTGT 60.323 45.833 0.00 0.00 0.00 4.00
2894 3837 4.081642 TCCTCTGTCTCCGTTTAATTCCTG 60.082 45.833 0.00 0.00 0.00 3.86
2895 3838 4.094476 TCCTCTGTCTCCGTTTAATTCCT 58.906 43.478 0.00 0.00 0.00 3.36
2896 3839 4.159879 TCTCCTCTGTCTCCGTTTAATTCC 59.840 45.833 0.00 0.00 0.00 3.01
2897 3840 5.326200 TCTCCTCTGTCTCCGTTTAATTC 57.674 43.478 0.00 0.00 0.00 2.17
2898 3841 5.725362 CTTCTCCTCTGTCTCCGTTTAATT 58.275 41.667 0.00 0.00 0.00 1.40
2899 3842 4.382147 GCTTCTCCTCTGTCTCCGTTTAAT 60.382 45.833 0.00 0.00 0.00 1.40
2900 3843 3.056749 GCTTCTCCTCTGTCTCCGTTTAA 60.057 47.826 0.00 0.00 0.00 1.52
2901 3844 2.492484 GCTTCTCCTCTGTCTCCGTTTA 59.508 50.000 0.00 0.00 0.00 2.01
2902 3845 1.273886 GCTTCTCCTCTGTCTCCGTTT 59.726 52.381 0.00 0.00 0.00 3.60
2903 3846 0.892063 GCTTCTCCTCTGTCTCCGTT 59.108 55.000 0.00 0.00 0.00 4.44
2904 3847 1.309499 CGCTTCTCCTCTGTCTCCGT 61.309 60.000 0.00 0.00 0.00 4.69
2905 3848 1.431440 CGCTTCTCCTCTGTCTCCG 59.569 63.158 0.00 0.00 0.00 4.63
2906 3849 1.813192 CCGCTTCTCCTCTGTCTCC 59.187 63.158 0.00 0.00 0.00 3.71
2907 3850 1.140804 GCCGCTTCTCCTCTGTCTC 59.859 63.158 0.00 0.00 0.00 3.36
2908 3851 2.705821 CGCCGCTTCTCCTCTGTCT 61.706 63.158 0.00 0.00 0.00 3.41
2909 3852 2.202676 CGCCGCTTCTCCTCTGTC 60.203 66.667 0.00 0.00 0.00 3.51
2910 3853 3.764466 CCGCCGCTTCTCCTCTGT 61.764 66.667 0.00 0.00 0.00 3.41
2911 3854 4.521062 CCCGCCGCTTCTCCTCTG 62.521 72.222 0.00 0.00 0.00 3.35
2934 3877 4.020617 TCACCCCCAGCGCTTCAG 62.021 66.667 7.50 0.00 0.00 3.02
2935 3878 4.329545 GTCACCCCCAGCGCTTCA 62.330 66.667 7.50 0.00 0.00 3.02
2941 3884 4.083862 GTCTCCGTCACCCCCAGC 62.084 72.222 0.00 0.00 0.00 4.85
2942 3885 3.760035 CGTCTCCGTCACCCCCAG 61.760 72.222 0.00 0.00 0.00 4.45
2943 3886 3.208623 TACGTCTCCGTCACCCCCA 62.209 63.158 0.00 0.00 46.28 4.96
2944 3887 2.361610 TACGTCTCCGTCACCCCC 60.362 66.667 0.00 0.00 46.28 5.40
2945 3888 1.375098 CTCTACGTCTCCGTCACCCC 61.375 65.000 0.00 0.00 46.28 4.95
2946 3889 0.676151 ACTCTACGTCTCCGTCACCC 60.676 60.000 0.00 0.00 46.28 4.61
2947 3890 1.163554 AACTCTACGTCTCCGTCACC 58.836 55.000 0.00 0.00 46.28 4.02
2948 3891 2.724228 CGAAACTCTACGTCTCCGTCAC 60.724 54.545 0.00 0.00 46.28 3.67
2949 3892 1.462283 CGAAACTCTACGTCTCCGTCA 59.538 52.381 0.00 0.00 46.28 4.35
2950 3893 1.202009 CCGAAACTCTACGTCTCCGTC 60.202 57.143 0.00 0.00 46.28 4.79
2952 3895 1.081892 TCCGAAACTCTACGTCTCCG 58.918 55.000 0.00 0.00 40.83 4.63
2953 3896 2.159407 CCTTCCGAAACTCTACGTCTCC 60.159 54.545 0.00 0.00 0.00 3.71
2954 3897 2.159407 CCCTTCCGAAACTCTACGTCTC 60.159 54.545 0.00 0.00 0.00 3.36
2955 3898 1.817447 CCCTTCCGAAACTCTACGTCT 59.183 52.381 0.00 0.00 0.00 4.18
2956 3899 1.135170 CCCCTTCCGAAACTCTACGTC 60.135 57.143 0.00 0.00 0.00 4.34
2957 3900 0.893447 CCCCTTCCGAAACTCTACGT 59.107 55.000 0.00 0.00 0.00 3.57
2958 3901 0.893447 ACCCCTTCCGAAACTCTACG 59.107 55.000 0.00 0.00 0.00 3.51
2959 3902 1.622312 ACACCCCTTCCGAAACTCTAC 59.378 52.381 0.00 0.00 0.00 2.59
2960 3903 1.621814 CACACCCCTTCCGAAACTCTA 59.378 52.381 0.00 0.00 0.00 2.43
2961 3904 0.396811 CACACCCCTTCCGAAACTCT 59.603 55.000 0.00 0.00 0.00 3.24
2962 3905 0.605589 CCACACCCCTTCCGAAACTC 60.606 60.000 0.00 0.00 0.00 3.01
2963 3906 1.350310 ACCACACCCCTTCCGAAACT 61.350 55.000 0.00 0.00 0.00 2.66
2964 3907 1.149854 ACCACACCCCTTCCGAAAC 59.850 57.895 0.00 0.00 0.00 2.78
2965 3908 1.149627 CACCACACCCCTTCCGAAA 59.850 57.895 0.00 0.00 0.00 3.46
2966 3909 2.073716 ACACCACACCCCTTCCGAA 61.074 57.895 0.00 0.00 0.00 4.30
2967 3910 2.446994 ACACCACACCCCTTCCGA 60.447 61.111 0.00 0.00 0.00 4.55
2968 3911 2.281484 CACACCACACCCCTTCCG 60.281 66.667 0.00 0.00 0.00 4.30
2969 3912 2.115266 CCACACCACACCCCTTCC 59.885 66.667 0.00 0.00 0.00 3.46
2970 3913 2.597510 GCCACACCACACCCCTTC 60.598 66.667 0.00 0.00 0.00 3.46
2971 3914 4.579384 CGCCACACCACACCCCTT 62.579 66.667 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.