Multiple sequence alignment - TraesCS2A01G583100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G583100 chr2A 100.000 3470 0 0 1 3470 775207894 775211363 0.000000e+00 6408.0
1 TraesCS2A01G583100 chr2A 91.930 570 36 6 1 563 734648290 734647724 0.000000e+00 789.0
2 TraesCS2A01G583100 chr2A 94.318 88 4 1 2985 3072 765191237 765191151 2.170000e-27 134.0
3 TraesCS2A01G583100 chr2D 94.554 1928 53 14 598 2474 649616979 649615053 0.000000e+00 2931.0
4 TraesCS2A01G583100 chr2D 89.867 602 43 14 1675 2266 164280091 164280684 0.000000e+00 758.0
5 TraesCS2A01G583100 chr2D 82.006 339 19 13 3147 3449 649614355 649614023 2.070000e-62 250.0
6 TraesCS2A01G583100 chr2D 89.062 64 3 1 2634 2693 649614901 649614838 3.710000e-10 76.8
7 TraesCS2A01G583100 chr2B 92.967 1948 61 26 587 2466 785291494 785289555 0.000000e+00 2769.0
8 TraesCS2A01G583100 chr2B 93.642 346 19 2 1921 2266 788845286 788844944 6.640000e-142 514.0
9 TraesCS2A01G583100 chr2B 86.411 287 18 7 3150 3425 785289172 785288896 9.420000e-76 294.0
10 TraesCS2A01G583100 chr2B 96.571 175 6 0 1675 1849 788846914 788846740 1.220000e-74 291.0
11 TraesCS2A01G583100 chr2B 95.506 178 8 0 1675 1852 746164891 746164714 5.670000e-73 285.0
12 TraesCS2A01G583100 chr2B 93.023 86 6 0 2181 2266 746164378 746164293 3.640000e-25 126.0
13 TraesCS2A01G583100 chr2B 77.869 122 17 8 2635 2748 785289399 785289280 2.240000e-07 67.6
14 TraesCS2A01G583100 chr2B 94.444 36 2 0 1669 1704 746164432 746164397 4.840000e-04 56.5
15 TraesCS2A01G583100 chr4A 92.743 565 39 2 1 563 110106760 110107324 0.000000e+00 815.0
16 TraesCS2A01G583100 chr4A 91.652 563 41 3 1 563 446953523 446952967 0.000000e+00 774.0
17 TraesCS2A01G583100 chr4A 88.256 579 52 6 1 563 607473723 607474301 0.000000e+00 678.0
18 TraesCS2A01G583100 chr7A 91.504 565 42 5 1 563 502248781 502249341 0.000000e+00 773.0
19 TraesCS2A01G583100 chr7A 89.912 565 37 11 1 563 508566643 508567189 0.000000e+00 710.0
20 TraesCS2A01G583100 chr7A 91.331 496 37 4 1 496 128153340 128153829 0.000000e+00 673.0
21 TraesCS2A01G583100 chr7A 86.207 145 20 0 419 563 628015264 628015408 1.290000e-34 158.0
22 TraesCS2A01G583100 chr7A 93.182 88 5 1 2985 3072 25044657 25044743 1.010000e-25 128.0
23 TraesCS2A01G583100 chrUn 90.764 563 49 2 2 563 229262855 229262295 0.000000e+00 749.0
24 TraesCS2A01G583100 chr1D 91.897 506 31 5 1 498 362919870 362920373 0.000000e+00 699.0
25 TraesCS2A01G583100 chr3B 87.667 600 53 17 1678 2266 794285647 794285058 0.000000e+00 678.0
26 TraesCS2A01G583100 chr3B 95.506 178 8 0 1675 1852 487555882 487555705 5.670000e-73 285.0
27 TraesCS2A01G583100 chr3B 93.023 86 6 0 2181 2266 487555595 487555510 3.640000e-25 126.0
28 TraesCS2A01G583100 chr7D 88.673 565 49 11 1 563 487869647 487870198 0.000000e+00 675.0
29 TraesCS2A01G583100 chr5D 84.967 153 21 2 411 563 481127053 481127203 1.670000e-33 154.0
30 TraesCS2A01G583100 chr1B 94.898 98 5 0 1675 1772 36276412 36276315 1.670000e-33 154.0
31 TraesCS2A01G583100 chr1B 100.000 33 0 0 2141 2173 36276313 36276281 1.040000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G583100 chr2A 775207894 775211363 3469 False 6408.000000 6408 100.000000 1 3470 1 chr2A.!!$F1 3469
1 TraesCS2A01G583100 chr2A 734647724 734648290 566 True 789.000000 789 91.930000 1 563 1 chr2A.!!$R1 562
2 TraesCS2A01G583100 chr2D 649614023 649616979 2956 True 1085.933333 2931 88.540667 598 3449 3 chr2D.!!$R1 2851
3 TraesCS2A01G583100 chr2D 164280091 164280684 593 False 758.000000 758 89.867000 1675 2266 1 chr2D.!!$F1 591
4 TraesCS2A01G583100 chr2B 785288896 785291494 2598 True 1043.533333 2769 85.749000 587 3425 3 chr2B.!!$R2 2838
5 TraesCS2A01G583100 chr2B 788844944 788846914 1970 True 402.500000 514 95.106500 1675 2266 2 chr2B.!!$R3 591
6 TraesCS2A01G583100 chr4A 110106760 110107324 564 False 815.000000 815 92.743000 1 563 1 chr4A.!!$F1 562
7 TraesCS2A01G583100 chr4A 446952967 446953523 556 True 774.000000 774 91.652000 1 563 1 chr4A.!!$R1 562
8 TraesCS2A01G583100 chr4A 607473723 607474301 578 False 678.000000 678 88.256000 1 563 1 chr4A.!!$F2 562
9 TraesCS2A01G583100 chr7A 502248781 502249341 560 False 773.000000 773 91.504000 1 563 1 chr7A.!!$F3 562
10 TraesCS2A01G583100 chr7A 508566643 508567189 546 False 710.000000 710 89.912000 1 563 1 chr7A.!!$F4 562
11 TraesCS2A01G583100 chrUn 229262295 229262855 560 True 749.000000 749 90.764000 2 563 1 chrUn.!!$R1 561
12 TraesCS2A01G583100 chr1D 362919870 362920373 503 False 699.000000 699 91.897000 1 498 1 chr1D.!!$F1 497
13 TraesCS2A01G583100 chr3B 794285058 794285647 589 True 678.000000 678 87.667000 1678 2266 1 chr3B.!!$R1 588
14 TraesCS2A01G583100 chr7D 487869647 487870198 551 False 675.000000 675 88.673000 1 563 1 chr7D.!!$F1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 908 0.036164 CCGTGACCCATCAAGTCCAA 59.964 55.0 0.0 0.0 36.31 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2701 4318 0.037419 TCAAACCTAACCGCGGTACC 60.037 55.0 34.44 0.16 33.53 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 1.199327 GGTCGATCTTCACGTCAGACA 59.801 52.381 0.41 0.00 0.00 3.41
212 222 2.011947 ACGACACCGACGAGAATGATA 58.988 47.619 0.00 0.00 39.50 2.15
284 303 7.201714 CCGTAGTAGTTTCTATCTAGTTGCACT 60.202 40.741 0.00 0.00 0.00 4.40
413 460 6.893958 AAATGTTGTTGTAAAATGAACGCA 57.106 29.167 0.00 0.00 0.00 5.24
563 624 2.975799 GTTCGGCGCCTGTTGGAA 60.976 61.111 26.68 17.15 34.57 3.53
564 625 2.668212 TTCGGCGCCTGTTGGAAG 60.668 61.111 26.68 6.06 34.57 3.46
565 626 4.697756 TCGGCGCCTGTTGGAAGG 62.698 66.667 26.68 5.22 40.63 3.46
567 628 4.660938 GGCGCCTGTTGGAAGGGT 62.661 66.667 22.15 0.00 37.84 4.34
568 629 3.365265 GCGCCTGTTGGAAGGGTG 61.365 66.667 0.00 0.00 37.84 4.61
569 630 2.672996 CGCCTGTTGGAAGGGTGG 60.673 66.667 0.00 0.00 37.84 4.61
570 631 2.843545 GCCTGTTGGAAGGGTGGA 59.156 61.111 0.00 0.00 37.84 4.02
571 632 1.384191 GCCTGTTGGAAGGGTGGAT 59.616 57.895 0.00 0.00 37.84 3.41
572 633 0.967380 GCCTGTTGGAAGGGTGGATG 60.967 60.000 0.00 0.00 37.84 3.51
573 634 0.405585 CCTGTTGGAAGGGTGGATGT 59.594 55.000 0.00 0.00 33.28 3.06
574 635 1.538047 CTGTTGGAAGGGTGGATGTG 58.462 55.000 0.00 0.00 0.00 3.21
575 636 0.850100 TGTTGGAAGGGTGGATGTGT 59.150 50.000 0.00 0.00 0.00 3.72
576 637 1.247567 GTTGGAAGGGTGGATGTGTG 58.752 55.000 0.00 0.00 0.00 3.82
577 638 0.539438 TTGGAAGGGTGGATGTGTGC 60.539 55.000 0.00 0.00 0.00 4.57
578 639 2.040544 GGAAGGGTGGATGTGTGCG 61.041 63.158 0.00 0.00 0.00 5.34
579 640 1.302511 GAAGGGTGGATGTGTGCGT 60.303 57.895 0.00 0.00 0.00 5.24
580 641 1.577328 GAAGGGTGGATGTGTGCGTG 61.577 60.000 0.00 0.00 0.00 5.34
581 642 3.737172 GGGTGGATGTGTGCGTGC 61.737 66.667 0.00 0.00 0.00 5.34
582 643 2.977456 GGTGGATGTGTGCGTGCA 60.977 61.111 0.00 0.00 0.00 4.57
583 644 2.334946 GGTGGATGTGTGCGTGCAT 61.335 57.895 0.00 0.00 34.54 3.96
584 645 1.154169 GTGGATGTGTGCGTGCATG 60.154 57.895 0.09 0.09 34.54 4.06
585 646 2.202518 GGATGTGTGCGTGCATGC 60.203 61.111 24.20 24.20 0.00 4.06
612 673 2.658707 GAGCGTCAACACTGCGGAC 61.659 63.158 0.00 0.00 0.00 4.79
659 720 3.244457 ACGACCGGAGAATTTCTTTCCTT 60.244 43.478 9.46 0.00 34.67 3.36
728 789 2.283604 TGACCGACAGCCAGCCTA 60.284 61.111 0.00 0.00 0.00 3.93
734 795 2.363795 ACAGCCAGCCTACGCCTA 60.364 61.111 0.00 0.00 34.57 3.93
736 797 3.155167 AGCCAGCCTACGCCTACC 61.155 66.667 0.00 0.00 34.57 3.18
738 799 3.912907 CCAGCCTACGCCTACCCG 61.913 72.222 0.00 0.00 34.57 5.28
814 908 0.036164 CCGTGACCCATCAAGTCCAA 59.964 55.000 0.00 0.00 36.31 3.53
823 917 2.025981 CCATCAAGTCCAATCCAGTCCA 60.026 50.000 0.00 0.00 0.00 4.02
824 918 3.276857 CATCAAGTCCAATCCAGTCCAG 58.723 50.000 0.00 0.00 0.00 3.86
825 919 2.338809 TCAAGTCCAATCCAGTCCAGT 58.661 47.619 0.00 0.00 0.00 4.00
826 920 2.303022 TCAAGTCCAATCCAGTCCAGTC 59.697 50.000 0.00 0.00 0.00 3.51
827 921 1.280457 AGTCCAATCCAGTCCAGTCC 58.720 55.000 0.00 0.00 0.00 3.85
828 922 0.984230 GTCCAATCCAGTCCAGTCCA 59.016 55.000 0.00 0.00 0.00 4.02
829 923 1.351017 GTCCAATCCAGTCCAGTCCAA 59.649 52.381 0.00 0.00 0.00 3.53
830 924 2.025887 GTCCAATCCAGTCCAGTCCAAT 60.026 50.000 0.00 0.00 0.00 3.16
831 925 2.239654 TCCAATCCAGTCCAGTCCAATC 59.760 50.000 0.00 0.00 0.00 2.67
832 926 2.648059 CAATCCAGTCCAGTCCAATCC 58.352 52.381 0.00 0.00 0.00 3.01
842 946 2.292267 CAGTCCAATCCAATCCTTCGG 58.708 52.381 0.00 0.00 0.00 4.30
883 1003 2.037367 CCGTCTGTCCCTCCCTCA 59.963 66.667 0.00 0.00 0.00 3.86
941 1067 2.806009 GCAAAGCAAGCCCAACCCA 61.806 57.895 0.00 0.00 0.00 4.51
1045 1192 1.948144 GCTTGCTCCTCCTCCTGTTTC 60.948 57.143 0.00 0.00 0.00 2.78
1208 1355 1.903404 GTCACCACCAAGGCCAAGG 60.903 63.158 5.01 9.04 43.14 3.61
1593 1749 2.821366 GTCGTCTACGGCTCCGGA 60.821 66.667 13.31 2.93 44.69 5.14
1926 3509 4.754114 CCATACTCCGTGTACTACTACCTC 59.246 50.000 0.00 0.00 33.45 3.85
1929 3512 3.118445 ACTCCGTGTACTACTACCTCTCC 60.118 52.174 0.00 0.00 0.00 3.71
2135 3718 4.101448 CAAGGCCGTGGAGGAGGG 62.101 72.222 11.31 0.00 45.00 4.30
2466 4049 4.500116 GCCTGCTCCTCGTCGTCC 62.500 72.222 0.00 0.00 0.00 4.79
2471 4057 2.188161 GCTCCTCGTCGTCCTAGGG 61.188 68.421 9.46 0.00 0.00 3.53
2474 4060 2.178890 CCTCGTCGTCCTAGGGTCG 61.179 68.421 9.46 14.23 35.73 4.79
2475 4061 2.821366 TCGTCGTCCTAGGGTCGC 60.821 66.667 9.46 9.53 34.54 5.19
2476 4062 4.233635 CGTCGTCCTAGGGTCGCG 62.234 72.222 9.46 16.20 34.54 5.87
2477 4063 3.885521 GTCGTCCTAGGGTCGCGG 61.886 72.222 9.46 0.00 34.54 6.46
2478 4064 4.100084 TCGTCCTAGGGTCGCGGA 62.100 66.667 9.46 0.00 34.54 5.54
2479 4065 3.584052 CGTCCTAGGGTCGCGGAG 61.584 72.222 9.46 0.00 0.00 4.63
2480 4066 2.439883 GTCCTAGGGTCGCGGAGT 60.440 66.667 9.46 0.00 0.00 3.85
2481 4067 2.439701 TCCTAGGGTCGCGGAGTG 60.440 66.667 9.46 0.00 40.84 3.51
2482 4068 4.208686 CCTAGGGTCGCGGAGTGC 62.209 72.222 6.13 0.00 38.30 4.40
2483 4069 3.141488 CTAGGGTCGCGGAGTGCT 61.141 66.667 6.13 0.00 43.27 4.40
2484 4070 3.127352 CTAGGGTCGCGGAGTGCTC 62.127 68.421 6.13 0.00 43.27 4.26
2510 4116 4.899239 GCCGGAGCTCCATCGGTG 62.899 72.222 31.67 14.37 44.97 4.94
2512 4118 3.461773 CGGAGCTCCATCGGTGGT 61.462 66.667 31.67 0.00 46.16 4.16
2513 4119 2.501610 GGAGCTCCATCGGTGGTC 59.498 66.667 28.43 4.78 46.16 4.02
2514 4120 2.060980 GGAGCTCCATCGGTGGTCT 61.061 63.158 28.43 13.12 46.16 3.85
2515 4121 0.755698 GGAGCTCCATCGGTGGTCTA 60.756 60.000 28.43 0.00 46.16 2.59
2516 4122 0.386113 GAGCTCCATCGGTGGTCTAC 59.614 60.000 15.92 2.72 46.16 2.59
2517 4123 1.043673 AGCTCCATCGGTGGTCTACC 61.044 60.000 15.92 0.00 46.16 3.18
2541 4147 1.230324 GCCGGCTCCTGCTTAATTAG 58.770 55.000 22.15 0.00 39.59 1.73
2552 4158 2.846193 GCTTAATTAGCCCACGATGGA 58.154 47.619 5.71 0.00 44.48 3.41
2553 4159 2.808543 GCTTAATTAGCCCACGATGGAG 59.191 50.000 5.71 0.00 44.48 3.86
2554 4160 3.744530 GCTTAATTAGCCCACGATGGAGT 60.745 47.826 5.71 0.00 44.48 3.85
2556 4162 0.179045 ATTAGCCCACGATGGAGTGC 60.179 55.000 5.71 1.77 40.96 4.40
2557 4163 1.264749 TTAGCCCACGATGGAGTGCT 61.265 55.000 5.71 8.06 40.96 4.40
2558 4164 1.960040 TAGCCCACGATGGAGTGCTG 61.960 60.000 12.81 0.00 40.96 4.41
2561 4167 1.742880 CCACGATGGAGTGCTGGTG 60.743 63.158 0.00 0.00 40.96 4.17
2563 4169 2.821366 CGATGGAGTGCTGGTGGC 60.821 66.667 0.00 0.00 42.22 5.01
2616 4222 4.830912 GTACTGTACGATCTACCGAGTTG 58.169 47.826 1.67 0.00 0.00 3.16
2617 4223 2.681848 ACTGTACGATCTACCGAGTTGG 59.318 50.000 0.00 0.00 46.41 3.77
2631 4237 3.615496 CCGAGTTGGTTAATTACTCCACG 59.385 47.826 7.76 8.38 35.91 4.94
2632 4238 4.240096 CGAGTTGGTTAATTACTCCACGT 58.760 43.478 7.76 0.00 35.91 4.49
2664 4270 2.015736 AGTGACAGATTAAGCTGCCG 57.984 50.000 20.30 0.00 39.51 5.69
2689 4306 2.012673 GTGCAGCTTTCGAATCCAGAT 58.987 47.619 0.00 0.00 0.00 2.90
2693 4310 1.839994 AGCTTTCGAATCCAGATCCCA 59.160 47.619 0.00 0.00 0.00 4.37
2695 4312 2.158900 GCTTTCGAATCCAGATCCCAGA 60.159 50.000 0.00 0.00 0.00 3.86
2697 4314 2.461300 TCGAATCCAGATCCCAGAGT 57.539 50.000 0.00 0.00 0.00 3.24
2698 4315 3.595190 TCGAATCCAGATCCCAGAGTA 57.405 47.619 0.00 0.00 0.00 2.59
2699 4316 3.491342 TCGAATCCAGATCCCAGAGTAG 58.509 50.000 0.00 0.00 0.00 2.57
2701 4318 3.005261 CGAATCCAGATCCCAGAGTAGTG 59.995 52.174 0.00 0.00 0.00 2.74
2703 4320 1.646447 TCCAGATCCCAGAGTAGTGGT 59.354 52.381 0.00 0.00 35.60 4.16
2704 4321 2.856864 TCCAGATCCCAGAGTAGTGGTA 59.143 50.000 0.00 0.00 35.60 3.25
2705 4322 2.959707 CCAGATCCCAGAGTAGTGGTAC 59.040 54.545 0.00 0.00 35.60 3.34
2706 4323 2.959707 CAGATCCCAGAGTAGTGGTACC 59.040 54.545 4.43 4.43 35.60 3.34
2707 4324 1.955080 GATCCCAGAGTAGTGGTACCG 59.045 57.143 7.57 0.00 35.60 4.02
2708 4325 0.682209 TCCCAGAGTAGTGGTACCGC 60.682 60.000 18.11 18.11 35.60 5.68
2709 4326 1.432251 CCAGAGTAGTGGTACCGCG 59.568 63.158 19.53 0.00 32.32 6.46
2710 4327 1.432251 CAGAGTAGTGGTACCGCGG 59.568 63.158 26.86 26.86 0.00 6.46
2715 4332 0.101219 GTAGTGGTACCGCGGTTAGG 59.899 60.000 38.94 7.00 0.00 2.69
2728 4345 2.422479 GCGGTTAGGTTTGAGGATTTCC 59.578 50.000 0.00 0.00 0.00 3.13
2744 4361 9.651913 TGAGGATTTCCAATTAGCAATAAAAAC 57.348 29.630 0.00 0.00 38.89 2.43
2746 4363 9.657419 AGGATTTCCAATTAGCAATAAAAACAG 57.343 29.630 0.00 0.00 38.89 3.16
2747 4364 8.390354 GGATTTCCAATTAGCAATAAAAACAGC 58.610 33.333 0.00 0.00 35.64 4.40
2748 4365 8.845413 ATTTCCAATTAGCAATAAAAACAGCA 57.155 26.923 0.00 0.00 0.00 4.41
2750 4367 6.991938 TCCAATTAGCAATAAAAACAGCAGT 58.008 32.000 0.00 0.00 0.00 4.40
2751 4368 6.867816 TCCAATTAGCAATAAAAACAGCAGTG 59.132 34.615 0.00 0.00 0.00 3.66
2752 4369 6.646240 CCAATTAGCAATAAAAACAGCAGTGT 59.354 34.615 0.00 0.00 39.19 3.55
2773 4403 1.585002 GCACGCGTGTTTGCTTCAA 60.585 52.632 36.80 0.00 35.74 2.69
2775 4405 0.522286 CACGCGTGTTTGCTTCAACA 60.522 50.000 30.50 0.00 0.00 3.33
2784 4414 4.683781 GTGTTTGCTTCAACACTTGTTCAA 59.316 37.500 15.66 0.00 35.83 2.69
2785 4415 5.348451 GTGTTTGCTTCAACACTTGTTCAAT 59.652 36.000 15.66 0.00 35.83 2.57
2786 4416 6.529829 GTGTTTGCTTCAACACTTGTTCAATA 59.470 34.615 15.66 0.00 35.83 1.90
2787 4417 7.062839 GTGTTTGCTTCAACACTTGTTCAATAA 59.937 33.333 15.66 0.00 35.83 1.40
2788 4418 7.763528 TGTTTGCTTCAACACTTGTTCAATAAT 59.236 29.630 0.00 0.00 35.83 1.28
2789 4419 7.928908 TTGCTTCAACACTTGTTCAATAATC 57.071 32.000 0.00 0.00 35.83 1.75
2790 4420 7.036996 TGCTTCAACACTTGTTCAATAATCA 57.963 32.000 0.00 0.00 35.83 2.57
2792 4422 6.917477 GCTTCAACACTTGTTCAATAATCACA 59.083 34.615 0.00 0.00 35.83 3.58
2794 4424 6.437928 TCAACACTTGTTCAATAATCACAGC 58.562 36.000 0.00 0.00 35.83 4.40
2795 4425 5.034554 ACACTTGTTCAATAATCACAGCG 57.965 39.130 0.00 0.00 0.00 5.18
2797 4427 3.440173 ACTTGTTCAATAATCACAGCGGG 59.560 43.478 0.00 0.00 0.00 6.13
2798 4428 3.066291 TGTTCAATAATCACAGCGGGT 57.934 42.857 0.00 0.00 0.00 5.28
2824 4462 2.189499 GGATCCATCCTGCGTTGCC 61.189 63.158 6.95 0.00 43.73 4.52
2846 4484 2.361104 GATGGGCCGTCCTTTGCA 60.361 61.111 15.17 0.00 36.20 4.08
2851 4489 2.650196 GCCGTCCTTTGCATTGCA 59.350 55.556 7.38 7.38 36.47 4.08
2853 4491 0.390209 GCCGTCCTTTGCATTGCATT 60.390 50.000 12.95 0.00 38.76 3.56
2854 4492 1.352114 CCGTCCTTTGCATTGCATTG 58.648 50.000 12.95 8.16 38.76 2.82
2856 4494 2.417651 CCGTCCTTTGCATTGCATTGAT 60.418 45.455 12.95 0.00 38.76 2.57
2857 4495 3.255725 CGTCCTTTGCATTGCATTGATT 58.744 40.909 12.95 0.00 38.76 2.57
2860 4498 3.437395 TCCTTTGCATTGCATTGATTTGC 59.563 39.130 12.95 4.39 38.76 3.68
2861 4499 3.438781 CCTTTGCATTGCATTGATTTGCT 59.561 39.130 12.95 0.00 43.18 3.91
2862 4500 4.083003 CCTTTGCATTGCATTGATTTGCTT 60.083 37.500 12.95 0.00 43.18 3.91
2863 4501 5.440234 TTTGCATTGCATTGATTTGCTTT 57.560 30.435 12.95 0.00 43.18 3.51
2867 4505 5.122554 TGCATTGCATTGATTTGCTTTTAGG 59.877 36.000 7.38 0.00 43.18 2.69
2868 4506 5.448089 GCATTGCATTGATTTGCTTTTAGGG 60.448 40.000 12.66 0.00 43.18 3.53
2869 4507 4.888326 TGCATTGATTTGCTTTTAGGGT 57.112 36.364 0.00 0.00 43.18 4.34
2870 4508 4.567971 TGCATTGATTTGCTTTTAGGGTG 58.432 39.130 0.00 0.00 43.18 4.61
2876 4661 3.586470 TTTGCTTTTAGGGTGAGGTGA 57.414 42.857 0.00 0.00 0.00 4.02
2884 4669 2.278332 AGGGTGAGGTGAAAGAAAGC 57.722 50.000 0.00 0.00 0.00 3.51
2886 4671 2.108952 AGGGTGAGGTGAAAGAAAGCAT 59.891 45.455 0.00 0.00 0.00 3.79
2887 4672 2.229784 GGGTGAGGTGAAAGAAAGCATG 59.770 50.000 0.00 0.00 0.00 4.06
2889 4674 3.569701 GGTGAGGTGAAAGAAAGCATGAA 59.430 43.478 0.00 0.00 0.00 2.57
2890 4675 4.037923 GGTGAGGTGAAAGAAAGCATGAAA 59.962 41.667 0.00 0.00 0.00 2.69
2893 4678 5.593909 TGAGGTGAAAGAAAGCATGAAAGAA 59.406 36.000 0.00 0.00 0.00 2.52
2894 4679 6.081872 AGGTGAAAGAAAGCATGAAAGAAG 57.918 37.500 0.00 0.00 0.00 2.85
2896 4681 5.221322 GGTGAAAGAAAGCATGAAAGAAGGT 60.221 40.000 0.00 0.00 0.00 3.50
2897 4682 6.276091 GTGAAAGAAAGCATGAAAGAAGGTT 58.724 36.000 0.00 0.00 0.00 3.50
2898 4683 6.758416 GTGAAAGAAAGCATGAAAGAAGGTTT 59.242 34.615 0.00 0.00 35.87 3.27
2899 4684 6.757947 TGAAAGAAAGCATGAAAGAAGGTTTG 59.242 34.615 0.00 0.00 33.63 2.93
2900 4685 4.625028 AGAAAGCATGAAAGAAGGTTTGC 58.375 39.130 0.00 0.00 33.63 3.68
2911 4718 4.313277 AGAAGGTTTGCTTTGCTCTTTC 57.687 40.909 0.00 0.00 0.00 2.62
2916 4723 2.124011 TTGCTTTGCTCTTTCGCTTG 57.876 45.000 0.00 0.00 0.00 4.01
2918 4725 0.039708 GCTTTGCTCTTTCGCTTGCT 60.040 50.000 0.00 0.00 0.00 3.91
2919 4726 1.601412 GCTTTGCTCTTTCGCTTGCTT 60.601 47.619 0.00 0.00 0.00 3.91
2921 4728 2.869233 TTGCTCTTTCGCTTGCTTTT 57.131 40.000 0.00 0.00 0.00 2.27
2922 4729 2.124011 TGCTCTTTCGCTTGCTTTTG 57.876 45.000 0.00 0.00 0.00 2.44
2923 4730 1.675483 TGCTCTTTCGCTTGCTTTTGA 59.325 42.857 0.00 0.00 0.00 2.69
2924 4731 2.098934 TGCTCTTTCGCTTGCTTTTGAA 59.901 40.909 0.00 0.00 0.00 2.69
2925 4732 3.243501 TGCTCTTTCGCTTGCTTTTGAAT 60.244 39.130 0.00 0.00 0.00 2.57
2926 4733 3.363128 GCTCTTTCGCTTGCTTTTGAATC 59.637 43.478 0.00 0.00 0.00 2.52
2927 4734 4.539870 CTCTTTCGCTTGCTTTTGAATCA 58.460 39.130 0.00 0.00 0.00 2.57
2928 4735 4.930963 TCTTTCGCTTGCTTTTGAATCAA 58.069 34.783 0.00 0.00 0.00 2.57
2929 4736 4.739716 TCTTTCGCTTGCTTTTGAATCAAC 59.260 37.500 0.00 0.00 0.00 3.18
2930 4737 3.706802 TCGCTTGCTTTTGAATCAACA 57.293 38.095 0.00 0.00 0.00 3.33
2931 4738 4.039151 TCGCTTGCTTTTGAATCAACAA 57.961 36.364 0.00 0.00 0.00 2.83
2932 4739 4.428209 TCGCTTGCTTTTGAATCAACAAA 58.572 34.783 0.00 0.00 37.87 2.83
2933 4740 4.503734 TCGCTTGCTTTTGAATCAACAAAG 59.496 37.500 0.00 0.00 40.15 2.77
2934 4741 4.521010 GCTTGCTTTTGAATCAACAAAGC 58.479 39.130 19.83 19.83 40.15 3.51
2935 4742 4.553351 GCTTGCTTTTGAATCAACAAAGCC 60.553 41.667 22.28 9.42 40.15 4.35
2936 4743 4.134379 TGCTTTTGAATCAACAAAGCCA 57.866 36.364 22.28 12.24 40.15 4.75
2937 4744 4.706035 TGCTTTTGAATCAACAAAGCCAT 58.294 34.783 22.28 0.00 40.15 4.40
2938 4745 5.124645 TGCTTTTGAATCAACAAAGCCATT 58.875 33.333 22.28 0.00 40.15 3.16
2939 4746 5.007823 TGCTTTTGAATCAACAAAGCCATTG 59.992 36.000 22.28 0.00 44.95 2.82
2940 4747 5.421212 TTTTGAATCAACAAAGCCATTGC 57.579 34.783 0.00 0.00 43.13 3.56
2941 4748 3.042871 TGAATCAACAAAGCCATTGCC 57.957 42.857 0.01 0.00 43.13 4.52
2942 4749 2.367894 TGAATCAACAAAGCCATTGCCA 59.632 40.909 0.01 0.00 43.13 4.92
2943 4750 3.008157 TGAATCAACAAAGCCATTGCCAT 59.992 39.130 0.01 0.00 43.13 4.40
2944 4751 2.747396 TCAACAAAGCCATTGCCATC 57.253 45.000 0.01 0.00 43.13 3.51
2945 4752 1.969208 TCAACAAAGCCATTGCCATCA 59.031 42.857 0.01 0.00 43.13 3.07
2946 4753 2.367894 TCAACAAAGCCATTGCCATCAA 59.632 40.909 0.01 0.00 43.13 2.57
2947 4754 2.460757 ACAAAGCCATTGCCATCAAC 57.539 45.000 0.01 0.00 43.13 3.18
2948 4755 1.002315 ACAAAGCCATTGCCATCAACC 59.998 47.619 0.01 0.00 43.13 3.77
2949 4756 0.247185 AAAGCCATTGCCATCAACCG 59.753 50.000 0.00 0.00 38.69 4.44
2950 4757 0.899717 AAGCCATTGCCATCAACCGT 60.900 50.000 0.00 0.00 38.69 4.83
2951 4758 0.899717 AGCCATTGCCATCAACCGTT 60.900 50.000 0.00 0.00 38.69 4.44
2952 4759 0.458370 GCCATTGCCATCAACCGTTC 60.458 55.000 0.00 0.00 34.60 3.95
2953 4760 0.887247 CCATTGCCATCAACCGTTCA 59.113 50.000 0.00 0.00 34.60 3.18
2954 4761 1.135315 CCATTGCCATCAACCGTTCAG 60.135 52.381 0.00 0.00 34.60 3.02
2956 4763 0.109532 TTGCCATCAACCGTTCAGGA 59.890 50.000 0.00 0.00 45.00 3.86
2957 4764 0.327924 TGCCATCAACCGTTCAGGAT 59.672 50.000 0.00 0.00 45.00 3.24
2958 4765 1.271871 TGCCATCAACCGTTCAGGATT 60.272 47.619 0.00 0.00 45.00 3.01
2959 4766 2.026729 TGCCATCAACCGTTCAGGATTA 60.027 45.455 0.00 0.00 45.00 1.75
2960 4767 2.354821 GCCATCAACCGTTCAGGATTAC 59.645 50.000 0.00 0.00 45.00 1.89
2961 4768 3.605634 CCATCAACCGTTCAGGATTACA 58.394 45.455 0.00 0.00 45.00 2.41
2962 4769 4.006989 CCATCAACCGTTCAGGATTACAA 58.993 43.478 0.00 0.00 45.00 2.41
2963 4770 4.457603 CCATCAACCGTTCAGGATTACAAA 59.542 41.667 0.00 0.00 45.00 2.83
2964 4771 5.390613 CATCAACCGTTCAGGATTACAAAC 58.609 41.667 0.00 0.00 45.00 2.93
2965 4772 4.710324 TCAACCGTTCAGGATTACAAACT 58.290 39.130 0.00 0.00 45.00 2.66
2966 4773 4.753107 TCAACCGTTCAGGATTACAAACTC 59.247 41.667 0.00 0.00 45.00 3.01
2967 4774 4.345859 ACCGTTCAGGATTACAAACTCA 57.654 40.909 0.00 0.00 45.00 3.41
2968 4775 4.315803 ACCGTTCAGGATTACAAACTCAG 58.684 43.478 0.00 0.00 45.00 3.35
2969 4776 3.684788 CCGTTCAGGATTACAAACTCAGG 59.315 47.826 0.00 0.00 45.00 3.86
2970 4777 3.684788 CGTTCAGGATTACAAACTCAGGG 59.315 47.826 0.00 0.00 0.00 4.45
2971 4778 3.350219 TCAGGATTACAAACTCAGGGC 57.650 47.619 0.00 0.00 0.00 5.19
2972 4779 2.642311 TCAGGATTACAAACTCAGGGCA 59.358 45.455 0.00 0.00 0.00 5.36
2973 4780 3.073798 TCAGGATTACAAACTCAGGGCAA 59.926 43.478 0.00 0.00 0.00 4.52
2974 4781 3.441572 CAGGATTACAAACTCAGGGCAAG 59.558 47.826 0.00 0.00 0.00 4.01
2975 4782 3.330701 AGGATTACAAACTCAGGGCAAGA 59.669 43.478 0.00 0.00 0.00 3.02
2976 4783 4.079253 GGATTACAAACTCAGGGCAAGAA 58.921 43.478 0.00 0.00 0.00 2.52
2977 4784 4.522789 GGATTACAAACTCAGGGCAAGAAA 59.477 41.667 0.00 0.00 0.00 2.52
2978 4785 5.335976 GGATTACAAACTCAGGGCAAGAAAG 60.336 44.000 0.00 0.00 0.00 2.62
2979 4786 3.297134 ACAAACTCAGGGCAAGAAAGA 57.703 42.857 0.00 0.00 0.00 2.52
2980 4787 3.631250 ACAAACTCAGGGCAAGAAAGAA 58.369 40.909 0.00 0.00 0.00 2.52
2981 4788 4.023291 ACAAACTCAGGGCAAGAAAGAAA 58.977 39.130 0.00 0.00 0.00 2.52
2982 4789 4.466015 ACAAACTCAGGGCAAGAAAGAAAA 59.534 37.500 0.00 0.00 0.00 2.29
2983 4790 4.926140 AACTCAGGGCAAGAAAGAAAAG 57.074 40.909 0.00 0.00 0.00 2.27
2984 4791 4.170468 ACTCAGGGCAAGAAAGAAAAGA 57.830 40.909 0.00 0.00 0.00 2.52
2985 4792 4.536765 ACTCAGGGCAAGAAAGAAAAGAA 58.463 39.130 0.00 0.00 0.00 2.52
2986 4793 4.582240 ACTCAGGGCAAGAAAGAAAAGAAG 59.418 41.667 0.00 0.00 0.00 2.85
2987 4794 3.319122 TCAGGGCAAGAAAGAAAAGAAGC 59.681 43.478 0.00 0.00 0.00 3.86
2988 4795 3.068590 CAGGGCAAGAAAGAAAAGAAGCA 59.931 43.478 0.00 0.00 0.00 3.91
2989 4796 3.320256 AGGGCAAGAAAGAAAAGAAGCAG 59.680 43.478 0.00 0.00 0.00 4.24
2990 4797 3.055591 GGCAAGAAAGAAAAGAAGCAGC 58.944 45.455 0.00 0.00 0.00 5.25
2991 4798 3.243670 GGCAAGAAAGAAAAGAAGCAGCT 60.244 43.478 0.00 0.00 0.00 4.24
2992 4799 3.980134 GCAAGAAAGAAAAGAAGCAGCTC 59.020 43.478 0.00 0.00 0.00 4.09
2993 4800 4.498682 GCAAGAAAGAAAAGAAGCAGCTCA 60.499 41.667 0.00 0.00 0.00 4.26
2994 4801 5.770417 CAAGAAAGAAAAGAAGCAGCTCAT 58.230 37.500 0.00 0.00 0.00 2.90
2995 4802 6.569226 GCAAGAAAGAAAAGAAGCAGCTCATA 60.569 38.462 0.00 0.00 0.00 2.15
2996 4803 7.365741 CAAGAAAGAAAAGAAGCAGCTCATAA 58.634 34.615 0.00 0.00 0.00 1.90
2997 4804 7.143514 AGAAAGAAAAGAAGCAGCTCATAAG 57.856 36.000 0.00 0.00 0.00 1.73
3010 4817 3.198872 GCTCATAAGCTTCCTACACACC 58.801 50.000 0.00 0.00 45.55 4.16
3011 4818 3.448686 CTCATAAGCTTCCTACACACCG 58.551 50.000 0.00 0.00 0.00 4.94
3012 4819 3.093814 TCATAAGCTTCCTACACACCGA 58.906 45.455 0.00 0.00 0.00 4.69
3013 4820 3.130516 TCATAAGCTTCCTACACACCGAG 59.869 47.826 0.00 0.00 0.00 4.63
3014 4821 0.037232 AAGCTTCCTACACACCGAGC 60.037 55.000 0.00 0.00 0.00 5.03
3015 4822 0.900647 AGCTTCCTACACACCGAGCT 60.901 55.000 0.00 0.00 35.78 4.09
3016 4823 0.815734 GCTTCCTACACACCGAGCTA 59.184 55.000 0.00 0.00 0.00 3.32
3017 4824 1.203994 GCTTCCTACACACCGAGCTAA 59.796 52.381 0.00 0.00 0.00 3.09
3018 4825 2.353406 GCTTCCTACACACCGAGCTAAA 60.353 50.000 0.00 0.00 0.00 1.85
3019 4826 3.863400 GCTTCCTACACACCGAGCTAAAA 60.863 47.826 0.00 0.00 0.00 1.52
3020 4827 4.312443 CTTCCTACACACCGAGCTAAAAA 58.688 43.478 0.00 0.00 0.00 1.94
3021 4828 3.921677 TCCTACACACCGAGCTAAAAAG 58.078 45.455 0.00 0.00 0.00 2.27
3022 4829 3.575256 TCCTACACACCGAGCTAAAAAGA 59.425 43.478 0.00 0.00 0.00 2.52
3023 4830 4.222145 TCCTACACACCGAGCTAAAAAGAT 59.778 41.667 0.00 0.00 0.00 2.40
3024 4831 4.567159 CCTACACACCGAGCTAAAAAGATC 59.433 45.833 0.00 0.00 0.00 2.75
3025 4832 4.002906 ACACACCGAGCTAAAAAGATCA 57.997 40.909 0.00 0.00 0.00 2.92
3026 4833 4.385825 ACACACCGAGCTAAAAAGATCAA 58.614 39.130 0.00 0.00 0.00 2.57
3027 4834 4.213482 ACACACCGAGCTAAAAAGATCAAC 59.787 41.667 0.00 0.00 0.00 3.18
3028 4835 4.213270 CACACCGAGCTAAAAAGATCAACA 59.787 41.667 0.00 0.00 0.00 3.33
3029 4836 4.452455 ACACCGAGCTAAAAAGATCAACAG 59.548 41.667 0.00 0.00 0.00 3.16
3030 4837 4.003648 ACCGAGCTAAAAAGATCAACAGG 58.996 43.478 0.00 0.00 0.00 4.00
3031 4838 3.375299 CCGAGCTAAAAAGATCAACAGGG 59.625 47.826 0.00 0.00 0.00 4.45
3032 4839 4.253685 CGAGCTAAAAAGATCAACAGGGA 58.746 43.478 0.00 0.00 0.00 4.20
3033 4840 4.331168 CGAGCTAAAAAGATCAACAGGGAG 59.669 45.833 0.00 0.00 0.00 4.30
3034 4841 5.491982 GAGCTAAAAAGATCAACAGGGAGA 58.508 41.667 0.00 0.00 0.00 3.71
3035 4842 5.880901 AGCTAAAAAGATCAACAGGGAGAA 58.119 37.500 0.00 0.00 0.00 2.87
3036 4843 5.942826 AGCTAAAAAGATCAACAGGGAGAAG 59.057 40.000 0.00 0.00 0.00 2.85
3037 4844 5.392487 GCTAAAAAGATCAACAGGGAGAAGC 60.392 44.000 0.00 0.00 0.00 3.86
3038 4845 3.795688 AAAGATCAACAGGGAGAAGCA 57.204 42.857 0.00 0.00 0.00 3.91
3039 4846 2.777832 AGATCAACAGGGAGAAGCAC 57.222 50.000 0.00 0.00 0.00 4.40
3040 4847 1.280421 AGATCAACAGGGAGAAGCACC 59.720 52.381 0.00 0.00 0.00 5.01
3041 4848 0.036010 ATCAACAGGGAGAAGCACCG 60.036 55.000 0.00 0.00 0.00 4.94
3042 4849 2.032681 AACAGGGAGAAGCACCGC 59.967 61.111 0.00 0.00 0.00 5.68
3043 4850 2.520536 AACAGGGAGAAGCACCGCT 61.521 57.895 0.00 0.00 42.56 5.52
3044 4851 2.125350 CAGGGAGAAGCACCGCTC 60.125 66.667 0.00 0.00 38.25 5.03
3045 4852 3.764466 AGGGAGAAGCACCGCTCG 61.764 66.667 0.00 0.00 38.25 5.03
3046 4853 4.821589 GGGAGAAGCACCGCTCGG 62.822 72.222 6.79 6.79 38.25 4.63
3058 4865 2.496817 GCTCGGCGATGAAGAGGT 59.503 61.111 11.27 0.00 32.96 3.85
3059 4866 1.590259 GCTCGGCGATGAAGAGGTC 60.590 63.158 11.27 0.00 32.96 3.85
3060 4867 1.066587 CTCGGCGATGAAGAGGTCC 59.933 63.158 11.27 0.00 0.00 4.46
3061 4868 1.379977 TCGGCGATGAAGAGGTCCT 60.380 57.895 4.99 0.00 0.00 3.85
3062 4869 1.066587 CGGCGATGAAGAGGTCCTC 59.933 63.158 11.31 11.31 0.00 3.71
3063 4870 1.667154 CGGCGATGAAGAGGTCCTCA 61.667 60.000 21.26 1.41 32.06 3.86
3064 4871 0.537188 GGCGATGAAGAGGTCCTCAA 59.463 55.000 21.26 6.53 32.06 3.02
3065 4872 1.646189 GCGATGAAGAGGTCCTCAAC 58.354 55.000 21.26 13.82 32.06 3.18
3066 4873 1.914634 CGATGAAGAGGTCCTCAACG 58.085 55.000 21.26 13.50 32.06 4.10
3067 4874 1.646189 GATGAAGAGGTCCTCAACGC 58.354 55.000 21.26 7.40 32.06 4.84
3068 4875 1.205893 GATGAAGAGGTCCTCAACGCT 59.794 52.381 21.26 5.93 32.06 5.07
3080 4887 2.057316 CTCAACGCTGATGGATCGATC 58.943 52.381 17.36 17.36 0.00 3.69
3081 4888 0.780596 CAACGCTGATGGATCGATCG 59.219 55.000 18.81 9.36 0.00 3.69
3082 4889 0.385751 AACGCTGATGGATCGATCGT 59.614 50.000 18.81 9.58 32.81 3.73
3083 4890 0.385751 ACGCTGATGGATCGATCGTT 59.614 50.000 18.81 6.71 0.00 3.85
3084 4891 0.780596 CGCTGATGGATCGATCGTTG 59.219 55.000 18.81 8.38 0.00 4.10
3085 4892 1.600413 CGCTGATGGATCGATCGTTGA 60.600 52.381 18.81 3.64 0.00 3.18
3086 4893 2.681706 GCTGATGGATCGATCGTTGAT 58.318 47.619 18.81 8.22 0.00 2.57
3087 4894 2.411069 GCTGATGGATCGATCGTTGATG 59.589 50.000 18.81 8.56 0.00 3.07
3088 4895 2.407090 TGATGGATCGATCGTTGATGC 58.593 47.619 18.81 7.41 35.05 3.91
3111 4945 4.789095 TGCTTTCGTGAACAGAGTTAAC 57.211 40.909 0.00 0.00 0.00 2.01
3115 4949 5.448089 GCTTTCGTGAACAGAGTTAACCAAA 60.448 40.000 0.88 0.00 0.00 3.28
3125 4959 6.823497 ACAGAGTTAACCAAAGCTTGTACTA 58.177 36.000 0.00 0.00 0.00 1.82
3126 4960 7.277396 ACAGAGTTAACCAAAGCTTGTACTAA 58.723 34.615 0.00 0.00 0.00 2.24
3127 4961 7.226128 ACAGAGTTAACCAAAGCTTGTACTAAC 59.774 37.037 0.00 6.69 0.00 2.34
3128 4962 7.225931 CAGAGTTAACCAAAGCTTGTACTAACA 59.774 37.037 17.28 0.00 0.00 2.41
3129 4963 7.226128 AGAGTTAACCAAAGCTTGTACTAACAC 59.774 37.037 17.28 13.31 34.61 3.32
3130 4964 7.052248 AGTTAACCAAAGCTTGTACTAACACT 58.948 34.615 17.28 5.89 34.61 3.55
3131 4965 5.751243 AACCAAAGCTTGTACTAACACTG 57.249 39.130 0.00 0.00 34.61 3.66
3132 4966 3.564225 ACCAAAGCTTGTACTAACACTGC 59.436 43.478 0.00 0.00 34.61 4.40
3133 4967 3.058224 CCAAAGCTTGTACTAACACTGCC 60.058 47.826 0.00 0.00 36.51 4.85
3134 4968 3.771577 AAGCTTGTACTAACACTGCCT 57.228 42.857 0.00 0.00 36.51 4.75
3135 4969 4.884668 AAGCTTGTACTAACACTGCCTA 57.115 40.909 0.00 0.00 36.51 3.93
3136 4970 4.189639 AGCTTGTACTAACACTGCCTAC 57.810 45.455 0.00 0.00 36.51 3.18
3137 4971 3.833070 AGCTTGTACTAACACTGCCTACT 59.167 43.478 0.00 0.00 36.51 2.57
3138 4972 3.927142 GCTTGTACTAACACTGCCTACTG 59.073 47.826 0.00 0.00 34.61 2.74
3139 4973 4.560919 GCTTGTACTAACACTGCCTACTGT 60.561 45.833 0.00 0.00 34.61 3.55
3140 4974 4.778534 TGTACTAACACTGCCTACTGTC 57.221 45.455 0.00 0.00 0.00 3.51
3141 4975 3.189910 TGTACTAACACTGCCTACTGTCG 59.810 47.826 0.00 0.00 0.00 4.35
3142 4976 2.511659 ACTAACACTGCCTACTGTCGA 58.488 47.619 0.00 0.00 0.00 4.20
3143 4977 3.090037 ACTAACACTGCCTACTGTCGAT 58.910 45.455 0.00 0.00 0.00 3.59
3144 4978 2.656560 AACACTGCCTACTGTCGATC 57.343 50.000 0.00 0.00 0.00 3.69
3145 4979 0.818296 ACACTGCCTACTGTCGATCC 59.182 55.000 0.00 0.00 0.00 3.36
3197 5031 6.359480 GGAATGTCCGTGGAGTTAATTAAG 57.641 41.667 0.00 0.00 0.00 1.85
3198 5032 5.296035 GGAATGTCCGTGGAGTTAATTAAGG 59.704 44.000 0.00 0.00 0.00 2.69
3199 5033 5.687166 ATGTCCGTGGAGTTAATTAAGGA 57.313 39.130 0.00 0.00 0.00 3.36
3200 5034 5.080969 TGTCCGTGGAGTTAATTAAGGAG 57.919 43.478 0.00 0.00 0.00 3.69
3201 5035 4.081309 TGTCCGTGGAGTTAATTAAGGAGG 60.081 45.833 0.00 0.00 0.00 4.30
3270 5107 4.841246 ACCTACTAGAATTAGATGCCCTGG 59.159 45.833 0.00 0.00 0.00 4.45
3320 5161 1.450134 GTGATGCACTGATCCGCCA 60.450 57.895 0.00 0.00 0.00 5.69
3357 5211 1.099295 CATGCATGGAGTGATGGCGT 61.099 55.000 19.40 0.00 0.00 5.68
3363 5217 1.812922 GGAGTGATGGCGTCTGCTG 60.813 63.158 8.40 0.00 42.25 4.41
3365 5219 2.435586 GTGATGGCGTCTGCTGCT 60.436 61.111 8.40 0.00 42.25 4.24
3366 5220 1.153568 GTGATGGCGTCTGCTGCTA 60.154 57.895 8.40 0.00 42.25 3.49
3367 5221 0.531532 GTGATGGCGTCTGCTGCTAT 60.532 55.000 8.40 0.00 42.25 2.97
3383 5255 3.148412 TGCTATGTTCAATGTGCACAGT 58.852 40.909 25.84 20.88 0.00 3.55
3386 5258 2.753989 TGTTCAATGTGCACAGTTCG 57.246 45.000 25.84 11.90 0.00 3.95
3387 5259 1.333308 TGTTCAATGTGCACAGTTCGG 59.667 47.619 25.84 11.15 0.00 4.30
3395 5267 3.729966 TGTGCACAGTTCGGTATTTACA 58.270 40.909 17.42 0.00 0.00 2.41
3428 5300 3.499737 CACCCGTGCATCGCCTTC 61.500 66.667 0.00 0.00 38.35 3.46
3429 5301 3.706373 ACCCGTGCATCGCCTTCT 61.706 61.111 0.00 0.00 38.35 2.85
3430 5302 2.892425 CCCGTGCATCGCCTTCTC 60.892 66.667 0.00 0.00 38.35 2.87
3431 5303 2.892425 CCGTGCATCGCCTTCTCC 60.892 66.667 0.00 0.00 38.35 3.71
3432 5304 2.125552 CGTGCATCGCCTTCTCCA 60.126 61.111 0.00 0.00 0.00 3.86
3433 5305 2.169789 CGTGCATCGCCTTCTCCAG 61.170 63.158 0.00 0.00 0.00 3.86
3449 5321 3.285838 CAGGATGGATCTCTGCACG 57.714 57.895 0.00 0.00 0.00 5.34
3450 5322 0.463204 CAGGATGGATCTCTGCACGT 59.537 55.000 0.00 0.00 0.00 4.49
3451 5323 0.749649 AGGATGGATCTCTGCACGTC 59.250 55.000 0.00 0.00 0.00 4.34
3452 5324 0.749649 GGATGGATCTCTGCACGTCT 59.250 55.000 0.00 0.00 0.00 4.18
3453 5325 1.269517 GGATGGATCTCTGCACGTCTC 60.270 57.143 0.00 0.00 0.00 3.36
3454 5326 0.749649 ATGGATCTCTGCACGTCTCC 59.250 55.000 0.00 0.00 0.00 3.71
3455 5327 0.611896 TGGATCTCTGCACGTCTCCA 60.612 55.000 0.00 0.37 0.00 3.86
3456 5328 0.532573 GGATCTCTGCACGTCTCCAA 59.467 55.000 0.00 0.00 0.00 3.53
3457 5329 1.634702 GATCTCTGCACGTCTCCAAC 58.365 55.000 0.00 0.00 0.00 3.77
3466 5338 2.050714 GTCTCCAACGACACGCGA 60.051 61.111 15.93 0.00 44.57 5.87
3467 5339 2.050714 TCTCCAACGACACGCGAC 60.051 61.111 15.93 2.51 44.57 5.19
3468 5340 3.458579 CTCCAACGACACGCGACG 61.459 66.667 15.93 17.78 44.57 5.12
3469 5341 4.986587 TCCAACGACACGCGACGG 62.987 66.667 15.93 4.07 44.57 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 2.516930 CCAATGCCTTCCGCCGAT 60.517 61.111 0.00 0.00 36.24 4.18
155 156 4.157656 CCATATGTCCAACCAACGTTCATT 59.842 41.667 0.00 0.00 0.00 2.57
212 222 0.908910 TCGCTACCATCACCACCATT 59.091 50.000 0.00 0.00 0.00 3.16
304 323 7.371936 GTGCAACTAGATAGATAGTTCGGAAT 58.628 38.462 0.00 0.00 42.68 3.01
307 326 5.462405 GGTGCAACTAGATAGATAGTTCGG 58.538 45.833 0.00 0.00 42.68 4.30
403 450 1.370414 GCAGCACGTGCGTTCATTT 60.370 52.632 32.94 12.74 43.99 2.32
453 509 1.525619 GTAGCCGCGCTAAAATGTAGG 59.474 52.381 5.56 0.00 43.07 3.18
456 516 1.006832 CAGTAGCCGCGCTAAAATGT 58.993 50.000 5.56 0.00 43.07 2.71
500 560 2.036006 GCGTGCCCATCGTTTGGTA 61.036 57.895 6.44 0.00 44.83 3.25
563 624 2.032528 CACGCACACATCCACCCT 59.967 61.111 0.00 0.00 0.00 4.34
564 625 3.737172 GCACGCACACATCCACCC 61.737 66.667 0.00 0.00 0.00 4.61
565 626 2.334946 ATGCACGCACACATCCACC 61.335 57.895 0.00 0.00 0.00 4.61
566 627 1.154169 CATGCACGCACACATCCAC 60.154 57.895 0.00 0.00 0.00 4.02
567 628 2.980378 GCATGCACGCACACATCCA 61.980 57.895 14.21 0.00 0.00 3.41
568 629 2.202518 GCATGCACGCACACATCC 60.203 61.111 14.21 0.00 0.00 3.51
569 630 2.202518 GGCATGCACGCACACATC 60.203 61.111 21.36 0.00 0.00 3.06
570 631 4.105733 CGGCATGCACGCACACAT 62.106 61.111 21.36 0.00 0.00 3.21
585 646 2.741985 TTGACGCTCATGCACCGG 60.742 61.111 0.00 0.00 39.64 5.28
612 673 1.372997 CTGTTCAGACACGGTCGGG 60.373 63.158 0.00 0.00 37.67 5.14
728 789 4.120331 GTGCGTACGGGTAGGCGT 62.120 66.667 18.39 0.00 46.48 5.68
738 799 2.212983 CCATCGTCGTCGTGCGTAC 61.213 63.158 1.33 0.00 42.13 3.67
814 908 1.971149 TGGATTGGACTGGACTGGAT 58.029 50.000 0.00 0.00 0.00 3.41
842 946 1.152610 AGCCATGGCCATGATGACC 60.153 57.895 41.32 24.04 41.20 4.02
883 1003 2.008242 TATGTGCCTTGCTTGGGTTT 57.992 45.000 0.00 0.00 0.00 3.27
945 1071 0.109735 GTGGGTTTTAAGCAGAGCGC 60.110 55.000 0.00 0.00 42.91 5.92
946 1072 0.521735 GGTGGGTTTTAAGCAGAGCG 59.478 55.000 0.00 0.00 0.00 5.03
1016 1163 4.704833 GGAGCAAGCACGGGAGCA 62.705 66.667 0.00 0.00 36.85 4.26
1210 1357 4.101448 CACGGGGGAGGAGGCTTG 62.101 72.222 0.00 0.00 0.00 4.01
1260 1413 0.470268 GGGAGAGGGAGAAGGCGTAT 60.470 60.000 0.00 0.00 0.00 3.06
1854 2010 2.703409 GCGTACTGCATCGCCTTG 59.297 61.111 16.41 0.00 45.54 3.61
1900 2056 0.664761 TAGTACACGGAGTATGGCGC 59.335 55.000 0.00 0.00 41.61 6.53
1926 3509 4.899239 GCGATGCCGGTCAGGGAG 62.899 72.222 1.90 0.00 46.12 4.30
2175 3758 1.915983 GGGGAGGTCCATGGTCTTC 59.084 63.158 12.58 12.15 37.91 2.87
2239 3822 1.467713 CGCCAGGAAGTAGTTCTCGAC 60.468 57.143 10.10 0.00 32.72 4.20
2304 3887 2.355481 GACACGTCCGACACCACC 60.355 66.667 0.00 0.00 0.00 4.61
2449 4032 4.500116 GGACGACGAGGAGCAGGC 62.500 72.222 0.00 0.00 0.00 4.85
2508 4114 4.814294 CGGCCAGCGGTAGACCAC 62.814 72.222 2.24 0.00 35.14 4.16
2519 4125 2.615227 ATTAAGCAGGAGCCGGCCAG 62.615 60.000 26.15 11.97 43.56 4.85
2520 4126 2.210144 AATTAAGCAGGAGCCGGCCA 62.210 55.000 26.15 0.00 43.56 5.36
2521 4127 0.179029 TAATTAAGCAGGAGCCGGCC 60.179 55.000 26.15 15.07 43.56 6.13
2522 4128 1.230324 CTAATTAAGCAGGAGCCGGC 58.770 55.000 21.89 21.89 43.56 6.13
2541 4147 2.821366 CAGCACTCCATCGTGGGC 60.821 66.667 4.52 0.00 38.32 5.36
2542 4148 2.124983 CCAGCACTCCATCGTGGG 60.125 66.667 4.52 0.00 38.32 4.61
2543 4149 1.742880 CACCAGCACTCCATCGTGG 60.743 63.158 0.00 0.00 39.43 4.94
2544 4150 1.742880 CCACCAGCACTCCATCGTG 60.743 63.158 0.00 0.00 37.94 4.35
2546 4152 2.821366 GCCACCAGCACTCCATCG 60.821 66.667 0.00 0.00 42.97 3.84
2566 4172 2.239812 TACGCGAGCATGCATCTGC 61.240 57.895 21.98 15.99 42.62 4.26
2567 4173 1.561730 GTACGCGAGCATGCATCTG 59.438 57.895 21.98 9.43 34.15 2.90
2568 4174 1.946156 CGTACGCGAGCATGCATCT 60.946 57.895 21.98 0.00 41.33 2.90
2569 4175 0.933047 TACGTACGCGAGCATGCATC 60.933 55.000 21.98 13.22 42.00 3.91
2570 4176 1.065109 TACGTACGCGAGCATGCAT 59.935 52.632 21.98 4.75 42.00 3.96
2571 4177 1.870458 GTACGTACGCGAGCATGCA 60.870 57.895 21.98 0.00 42.00 3.96
2594 4200 4.260538 CCAACTCGGTAGATCGTACAGTAC 60.261 50.000 0.00 0.00 0.00 2.73
2596 4202 2.681848 CCAACTCGGTAGATCGTACAGT 59.318 50.000 0.00 0.00 0.00 3.55
2597 4203 3.335786 CCAACTCGGTAGATCGTACAG 57.664 52.381 0.00 2.06 0.00 2.74
2607 4213 8.707284 TACGTGGAGTAATTAACCAACTCGGTA 61.707 40.741 12.35 6.41 38.79 4.02
2608 4214 7.967084 TACGTGGAGTAATTAACCAACTCGGT 61.967 42.308 12.35 7.13 40.58 4.69
2609 4215 3.615496 CGTGGAGTAATTAACCAACTCGG 59.385 47.826 12.35 0.00 40.44 4.63
2610 4216 4.240096 ACGTGGAGTAATTAACCAACTCG 58.760 43.478 12.35 13.38 40.44 4.18
2611 4217 6.309737 CACTACGTGGAGTAATTAACCAACTC 59.690 42.308 5.70 5.69 39.12 3.01
2612 4218 6.161381 CACTACGTGGAGTAATTAACCAACT 58.839 40.000 5.70 0.00 35.40 3.16
2613 4219 6.399204 CACTACGTGGAGTAATTAACCAAC 57.601 41.667 5.70 7.73 35.40 3.77
2628 4234 5.045215 TGTCACTAACTTTTCCACTACGTG 58.955 41.667 0.00 0.00 0.00 4.49
2629 4235 5.068198 TCTGTCACTAACTTTTCCACTACGT 59.932 40.000 0.00 0.00 0.00 3.57
2630 4236 5.526115 TCTGTCACTAACTTTTCCACTACG 58.474 41.667 0.00 0.00 0.00 3.51
2631 4237 7.964604 AATCTGTCACTAACTTTTCCACTAC 57.035 36.000 0.00 0.00 0.00 2.73
2632 4238 9.706691 CTTAATCTGTCACTAACTTTTCCACTA 57.293 33.333 0.00 0.00 0.00 2.74
2681 4291 3.310954 ACCACTACTCTGGGATCTGGATT 60.311 47.826 0.00 0.00 35.34 3.01
2689 4306 0.682209 GCGGTACCACTACTCTGGGA 60.682 60.000 13.54 0.00 35.34 4.37
2693 4310 0.610232 AACCGCGGTACCACTACTCT 60.610 55.000 34.44 8.91 0.00 3.24
2695 4312 1.098050 CTAACCGCGGTACCACTACT 58.902 55.000 34.44 16.23 0.00 2.57
2697 4314 0.323360 ACCTAACCGCGGTACCACTA 60.323 55.000 34.44 18.90 31.69 2.74
2698 4315 1.187567 AACCTAACCGCGGTACCACT 61.188 55.000 34.44 18.76 33.53 4.00
2699 4316 0.320683 AAACCTAACCGCGGTACCAC 60.321 55.000 34.44 0.07 33.53 4.16
2701 4318 0.037419 TCAAACCTAACCGCGGTACC 60.037 55.000 34.44 0.16 33.53 3.34
2703 4320 0.247185 CCTCAAACCTAACCGCGGTA 59.753 55.000 34.44 18.53 33.53 4.02
2704 4321 1.004200 CCTCAAACCTAACCGCGGT 60.004 57.895 28.70 28.70 35.97 5.68
2705 4322 0.107848 ATCCTCAAACCTAACCGCGG 60.108 55.000 26.86 26.86 0.00 6.46
2706 4323 1.734163 AATCCTCAAACCTAACCGCG 58.266 50.000 0.00 0.00 0.00 6.46
2707 4324 2.422479 GGAAATCCTCAAACCTAACCGC 59.578 50.000 0.00 0.00 0.00 5.68
2708 4325 3.681593 TGGAAATCCTCAAACCTAACCG 58.318 45.455 0.44 0.00 36.82 4.44
2709 4326 6.605471 AATTGGAAATCCTCAAACCTAACC 57.395 37.500 0.44 0.00 36.82 2.85
2710 4327 7.093945 TGCTAATTGGAAATCCTCAAACCTAAC 60.094 37.037 0.44 0.00 36.82 2.34
2715 4332 9.651913 TTTATTGCTAATTGGAAATCCTCAAAC 57.348 29.630 0.00 0.00 36.82 2.93
2728 4345 7.169645 ACACACTGCTGTTTTTATTGCTAATTG 59.830 33.333 0.00 0.00 0.00 2.32
2746 4363 4.943591 CACGCGTGCACACACTGC 62.944 66.667 28.16 10.62 45.10 4.40
2747 4364 2.576287 AAACACGCGTGCACACACTG 62.576 55.000 37.35 12.65 45.10 3.66
2748 4365 2.395360 AAACACGCGTGCACACACT 61.395 52.632 37.35 14.96 45.10 3.55
2750 4367 2.099254 CAAACACGCGTGCACACA 59.901 55.556 37.35 0.00 0.00 3.72
2751 4368 3.311752 GCAAACACGCGTGCACAC 61.312 61.111 37.35 21.46 40.58 3.82
2752 4369 2.911439 GAAGCAAACACGCGTGCACA 62.911 55.000 37.35 0.00 43.42 4.57
2773 4403 4.083324 CCGCTGTGATTATTGAACAAGTGT 60.083 41.667 0.00 0.00 0.00 3.55
2775 4405 3.440173 CCCGCTGTGATTATTGAACAAGT 59.560 43.478 0.00 0.00 0.00 3.16
2789 4419 1.672356 CCTTTCCTCACCCGCTGTG 60.672 63.158 0.00 0.00 46.88 3.66
2790 4420 1.201429 ATCCTTTCCTCACCCGCTGT 61.201 55.000 0.00 0.00 0.00 4.40
2792 4422 1.627297 GGATCCTTTCCTCACCCGCT 61.627 60.000 3.84 0.00 41.78 5.52
2794 4424 0.839946 ATGGATCCTTTCCTCACCCG 59.160 55.000 14.23 0.00 45.68 5.28
2795 4425 1.143889 GGATGGATCCTTTCCTCACCC 59.856 57.143 20.92 5.56 45.68 4.61
2832 4470 2.573340 CAATGCAAAGGACGGCCC 59.427 61.111 1.76 0.00 33.31 5.80
2835 4473 1.067706 TCAATGCAATGCAAAGGACGG 60.068 47.619 13.45 0.00 43.62 4.79
2838 4476 3.437395 GCAAATCAATGCAATGCAAAGGA 59.563 39.130 13.45 10.59 43.62 3.36
2851 4489 5.047092 CACCTCACCCTAAAAGCAAATCAAT 60.047 40.000 0.00 0.00 0.00 2.57
2853 4491 3.826157 CACCTCACCCTAAAAGCAAATCA 59.174 43.478 0.00 0.00 0.00 2.57
2854 4492 4.079253 TCACCTCACCCTAAAAGCAAATC 58.921 43.478 0.00 0.00 0.00 2.17
2856 4494 3.586470 TCACCTCACCCTAAAAGCAAA 57.414 42.857 0.00 0.00 0.00 3.68
2857 4495 3.586470 TTCACCTCACCCTAAAAGCAA 57.414 42.857 0.00 0.00 0.00 3.91
2860 4498 5.278512 GCTTTCTTTCACCTCACCCTAAAAG 60.279 44.000 0.00 0.00 0.00 2.27
2861 4499 4.583073 GCTTTCTTTCACCTCACCCTAAAA 59.417 41.667 0.00 0.00 0.00 1.52
2862 4500 4.142038 GCTTTCTTTCACCTCACCCTAAA 58.858 43.478 0.00 0.00 0.00 1.85
2863 4501 3.137544 TGCTTTCTTTCACCTCACCCTAA 59.862 43.478 0.00 0.00 0.00 2.69
2867 4505 3.149196 TCATGCTTTCTTTCACCTCACC 58.851 45.455 0.00 0.00 0.00 4.02
2868 4506 4.836125 TTCATGCTTTCTTTCACCTCAC 57.164 40.909 0.00 0.00 0.00 3.51
2869 4507 5.132502 TCTTTCATGCTTTCTTTCACCTCA 58.867 37.500 0.00 0.00 0.00 3.86
2870 4508 5.695851 TCTTTCATGCTTTCTTTCACCTC 57.304 39.130 0.00 0.00 0.00 3.85
2876 4661 5.525012 GCAAACCTTCTTTCATGCTTTCTTT 59.475 36.000 0.00 0.00 0.00 2.52
2884 4669 4.374399 AGCAAAGCAAACCTTCTTTCATG 58.626 39.130 0.00 0.00 31.99 3.07
2886 4671 3.701040 AGAGCAAAGCAAACCTTCTTTCA 59.299 39.130 0.00 0.00 31.99 2.69
2887 4672 4.313277 AGAGCAAAGCAAACCTTCTTTC 57.687 40.909 0.00 0.00 31.99 2.62
2889 4674 4.686972 GAAAGAGCAAAGCAAACCTTCTT 58.313 39.130 0.00 0.00 31.99 2.52
2890 4675 3.243201 CGAAAGAGCAAAGCAAACCTTCT 60.243 43.478 0.00 0.00 31.99 2.85
2893 4678 1.269257 GCGAAAGAGCAAAGCAAACCT 60.269 47.619 0.00 0.00 37.05 3.50
2894 4679 1.131771 GCGAAAGAGCAAAGCAAACC 58.868 50.000 0.00 0.00 37.05 3.27
2896 4681 2.462889 CAAGCGAAAGAGCAAAGCAAA 58.537 42.857 0.00 0.00 40.15 3.68
2897 4682 1.865248 GCAAGCGAAAGAGCAAAGCAA 60.865 47.619 0.00 0.00 40.15 3.91
2898 4683 0.318107 GCAAGCGAAAGAGCAAAGCA 60.318 50.000 0.00 0.00 40.15 3.91
2899 4684 0.039708 AGCAAGCGAAAGAGCAAAGC 60.040 50.000 0.00 0.00 40.15 3.51
2900 4685 2.412421 AAGCAAGCGAAAGAGCAAAG 57.588 45.000 0.00 0.00 40.15 2.77
2911 4718 4.754332 CTTTGTTGATTCAAAAGCAAGCG 58.246 39.130 0.00 0.00 37.48 4.68
2916 4723 5.445845 CAATGGCTTTGTTGATTCAAAAGC 58.554 37.500 20.32 20.32 36.96 3.51
2918 4725 4.275443 GGCAATGGCTTTGTTGATTCAAAA 59.725 37.500 13.79 0.00 40.87 2.44
2919 4726 3.814283 GGCAATGGCTTTGTTGATTCAAA 59.186 39.130 13.79 0.00 40.87 2.69
2921 4728 2.367894 TGGCAATGGCTTTGTTGATTCA 59.632 40.909 8.59 0.00 40.87 2.57
2922 4729 3.042871 TGGCAATGGCTTTGTTGATTC 57.957 42.857 8.59 0.00 40.87 2.52
2923 4730 3.008157 TGATGGCAATGGCTTTGTTGATT 59.992 39.130 8.59 0.00 40.87 2.57
2924 4731 2.568062 TGATGGCAATGGCTTTGTTGAT 59.432 40.909 8.59 4.67 40.87 2.57
2925 4732 1.969208 TGATGGCAATGGCTTTGTTGA 59.031 42.857 8.59 0.37 40.87 3.18
2926 4733 2.459060 TGATGGCAATGGCTTTGTTG 57.541 45.000 8.59 2.31 40.87 3.33
2927 4734 2.550639 GGTTGATGGCAATGGCTTTGTT 60.551 45.455 8.59 1.05 40.87 2.83
2928 4735 1.002315 GGTTGATGGCAATGGCTTTGT 59.998 47.619 8.59 0.00 40.87 2.83
2929 4736 1.729284 GGTTGATGGCAATGGCTTTG 58.271 50.000 8.59 8.64 40.87 2.77
2930 4737 0.247185 CGGTTGATGGCAATGGCTTT 59.753 50.000 8.59 0.00 40.87 3.51
2931 4738 0.899717 ACGGTTGATGGCAATGGCTT 60.900 50.000 8.59 0.77 40.87 4.35
2932 4739 0.899717 AACGGTTGATGGCAATGGCT 60.900 50.000 8.59 0.00 40.87 4.75
2933 4740 0.458370 GAACGGTTGATGGCAATGGC 60.458 55.000 0.00 0.00 36.22 4.40
2934 4741 0.887247 TGAACGGTTGATGGCAATGG 59.113 50.000 0.00 0.00 36.22 3.16
2935 4742 1.135315 CCTGAACGGTTGATGGCAATG 60.135 52.381 0.00 0.00 36.22 2.82
2936 4743 1.176527 CCTGAACGGTTGATGGCAAT 58.823 50.000 0.00 0.00 36.22 3.56
2937 4744 0.109532 TCCTGAACGGTTGATGGCAA 59.890 50.000 0.00 0.00 0.00 4.52
2938 4745 0.327924 ATCCTGAACGGTTGATGGCA 59.672 50.000 0.00 0.00 0.00 4.92
2939 4746 1.463674 AATCCTGAACGGTTGATGGC 58.536 50.000 0.00 0.00 0.00 4.40
2940 4747 3.605634 TGTAATCCTGAACGGTTGATGG 58.394 45.455 0.00 0.00 0.00 3.51
2941 4748 5.181245 AGTTTGTAATCCTGAACGGTTGATG 59.819 40.000 0.00 0.00 0.00 3.07
2942 4749 5.313712 AGTTTGTAATCCTGAACGGTTGAT 58.686 37.500 0.00 0.00 0.00 2.57
2943 4750 4.710324 AGTTTGTAATCCTGAACGGTTGA 58.290 39.130 0.00 0.00 0.00 3.18
2944 4751 4.513692 TGAGTTTGTAATCCTGAACGGTTG 59.486 41.667 0.00 0.00 0.00 3.77
2945 4752 4.710324 TGAGTTTGTAATCCTGAACGGTT 58.290 39.130 0.00 0.00 0.00 4.44
2946 4753 4.315803 CTGAGTTTGTAATCCTGAACGGT 58.684 43.478 0.00 0.00 0.00 4.83
2947 4754 3.684788 CCTGAGTTTGTAATCCTGAACGG 59.315 47.826 0.00 0.00 0.00 4.44
2948 4755 3.684788 CCCTGAGTTTGTAATCCTGAACG 59.315 47.826 0.00 0.00 0.00 3.95
2949 4756 3.440522 GCCCTGAGTTTGTAATCCTGAAC 59.559 47.826 0.00 0.00 0.00 3.18
2950 4757 3.073798 TGCCCTGAGTTTGTAATCCTGAA 59.926 43.478 0.00 0.00 0.00 3.02
2951 4758 2.642311 TGCCCTGAGTTTGTAATCCTGA 59.358 45.455 0.00 0.00 0.00 3.86
2952 4759 3.071874 TGCCCTGAGTTTGTAATCCTG 57.928 47.619 0.00 0.00 0.00 3.86
2953 4760 3.330701 TCTTGCCCTGAGTTTGTAATCCT 59.669 43.478 0.00 0.00 0.00 3.24
2954 4761 3.686016 TCTTGCCCTGAGTTTGTAATCC 58.314 45.455 0.00 0.00 0.00 3.01
2955 4762 5.473504 TCTTTCTTGCCCTGAGTTTGTAATC 59.526 40.000 0.00 0.00 0.00 1.75
2956 4763 5.385198 TCTTTCTTGCCCTGAGTTTGTAAT 58.615 37.500 0.00 0.00 0.00 1.89
2957 4764 4.787551 TCTTTCTTGCCCTGAGTTTGTAA 58.212 39.130 0.00 0.00 0.00 2.41
2958 4765 4.431416 TCTTTCTTGCCCTGAGTTTGTA 57.569 40.909 0.00 0.00 0.00 2.41
2959 4766 3.297134 TCTTTCTTGCCCTGAGTTTGT 57.703 42.857 0.00 0.00 0.00 2.83
2960 4767 4.654091 TTTCTTTCTTGCCCTGAGTTTG 57.346 40.909 0.00 0.00 0.00 2.93
2961 4768 4.956075 TCTTTTCTTTCTTGCCCTGAGTTT 59.044 37.500 0.00 0.00 0.00 2.66
2962 4769 4.536765 TCTTTTCTTTCTTGCCCTGAGTT 58.463 39.130 0.00 0.00 0.00 3.01
2963 4770 4.170468 TCTTTTCTTTCTTGCCCTGAGT 57.830 40.909 0.00 0.00 0.00 3.41
2964 4771 4.558296 GCTTCTTTTCTTTCTTGCCCTGAG 60.558 45.833 0.00 0.00 0.00 3.35
2965 4772 3.319122 GCTTCTTTTCTTTCTTGCCCTGA 59.681 43.478 0.00 0.00 0.00 3.86
2966 4773 3.068590 TGCTTCTTTTCTTTCTTGCCCTG 59.931 43.478 0.00 0.00 0.00 4.45
2967 4774 3.299503 TGCTTCTTTTCTTTCTTGCCCT 58.700 40.909 0.00 0.00 0.00 5.19
2968 4775 3.646946 CTGCTTCTTTTCTTTCTTGCCC 58.353 45.455 0.00 0.00 0.00 5.36
2969 4776 3.055591 GCTGCTTCTTTTCTTTCTTGCC 58.944 45.455 0.00 0.00 0.00 4.52
2970 4777 3.974912 AGCTGCTTCTTTTCTTTCTTGC 58.025 40.909 0.00 0.00 0.00 4.01
2971 4778 5.179045 TGAGCTGCTTCTTTTCTTTCTTG 57.821 39.130 2.53 0.00 0.00 3.02
2972 4779 7.516198 TTATGAGCTGCTTCTTTTCTTTCTT 57.484 32.000 2.53 0.00 0.00 2.52
2973 4780 6.349197 GCTTATGAGCTGCTTCTTTTCTTTCT 60.349 38.462 2.53 0.00 45.65 2.52
2974 4781 5.799435 GCTTATGAGCTGCTTCTTTTCTTTC 59.201 40.000 2.53 0.00 45.65 2.62
2975 4782 5.707931 GCTTATGAGCTGCTTCTTTTCTTT 58.292 37.500 2.53 0.00 45.65 2.52
2976 4783 5.307926 GCTTATGAGCTGCTTCTTTTCTT 57.692 39.130 2.53 0.00 45.65 2.52
2977 4784 4.961435 GCTTATGAGCTGCTTCTTTTCT 57.039 40.909 2.53 0.00 45.65 2.52
2990 4797 3.130516 TCGGTGTGTAGGAAGCTTATGAG 59.869 47.826 0.00 0.00 0.00 2.90
2991 4798 3.093814 TCGGTGTGTAGGAAGCTTATGA 58.906 45.455 0.00 0.00 0.00 2.15
2992 4799 3.448686 CTCGGTGTGTAGGAAGCTTATG 58.551 50.000 0.00 0.00 0.00 1.90
2993 4800 2.159085 GCTCGGTGTGTAGGAAGCTTAT 60.159 50.000 0.00 0.00 0.00 1.73
2994 4801 1.203994 GCTCGGTGTGTAGGAAGCTTA 59.796 52.381 0.00 0.00 0.00 3.09
2995 4802 0.037232 GCTCGGTGTGTAGGAAGCTT 60.037 55.000 0.00 0.00 0.00 3.74
2996 4803 0.900647 AGCTCGGTGTGTAGGAAGCT 60.901 55.000 0.00 0.00 0.00 3.74
2997 4804 0.815734 TAGCTCGGTGTGTAGGAAGC 59.184 55.000 0.00 0.00 0.00 3.86
2998 4805 3.587797 TTTAGCTCGGTGTGTAGGAAG 57.412 47.619 0.00 0.00 0.00 3.46
2999 4806 4.039488 TCTTTTTAGCTCGGTGTGTAGGAA 59.961 41.667 0.00 0.00 0.00 3.36
3000 4807 3.575256 TCTTTTTAGCTCGGTGTGTAGGA 59.425 43.478 0.00 0.00 0.00 2.94
3001 4808 3.921677 TCTTTTTAGCTCGGTGTGTAGG 58.078 45.455 0.00 0.00 0.00 3.18
3002 4809 5.168569 TGATCTTTTTAGCTCGGTGTGTAG 58.831 41.667 0.00 0.00 0.00 2.74
3003 4810 5.142061 TGATCTTTTTAGCTCGGTGTGTA 57.858 39.130 0.00 0.00 0.00 2.90
3004 4811 4.002906 TGATCTTTTTAGCTCGGTGTGT 57.997 40.909 0.00 0.00 0.00 3.72
3005 4812 4.213270 TGTTGATCTTTTTAGCTCGGTGTG 59.787 41.667 0.00 0.00 0.00 3.82
3006 4813 4.385825 TGTTGATCTTTTTAGCTCGGTGT 58.614 39.130 0.00 0.00 0.00 4.16
3007 4814 4.142816 CCTGTTGATCTTTTTAGCTCGGTG 60.143 45.833 0.00 0.00 0.00 4.94
3008 4815 4.003648 CCTGTTGATCTTTTTAGCTCGGT 58.996 43.478 0.00 0.00 0.00 4.69
3009 4816 3.375299 CCCTGTTGATCTTTTTAGCTCGG 59.625 47.826 0.00 0.00 0.00 4.63
3010 4817 4.253685 TCCCTGTTGATCTTTTTAGCTCG 58.746 43.478 0.00 0.00 0.00 5.03
3011 4818 5.491982 TCTCCCTGTTGATCTTTTTAGCTC 58.508 41.667 0.00 0.00 0.00 4.09
3012 4819 5.505181 TCTCCCTGTTGATCTTTTTAGCT 57.495 39.130 0.00 0.00 0.00 3.32
3013 4820 5.392487 GCTTCTCCCTGTTGATCTTTTTAGC 60.392 44.000 0.00 0.00 0.00 3.09
3014 4821 5.707298 TGCTTCTCCCTGTTGATCTTTTTAG 59.293 40.000 0.00 0.00 0.00 1.85
3015 4822 5.473504 GTGCTTCTCCCTGTTGATCTTTTTA 59.526 40.000 0.00 0.00 0.00 1.52
3016 4823 4.279420 GTGCTTCTCCCTGTTGATCTTTTT 59.721 41.667 0.00 0.00 0.00 1.94
3017 4824 3.823304 GTGCTTCTCCCTGTTGATCTTTT 59.177 43.478 0.00 0.00 0.00 2.27
3018 4825 3.416156 GTGCTTCTCCCTGTTGATCTTT 58.584 45.455 0.00 0.00 0.00 2.52
3019 4826 2.290577 GGTGCTTCTCCCTGTTGATCTT 60.291 50.000 0.00 0.00 0.00 2.40
3020 4827 1.280421 GGTGCTTCTCCCTGTTGATCT 59.720 52.381 0.00 0.00 0.00 2.75
3021 4828 1.743996 GGTGCTTCTCCCTGTTGATC 58.256 55.000 0.00 0.00 0.00 2.92
3022 4829 0.036010 CGGTGCTTCTCCCTGTTGAT 60.036 55.000 0.00 0.00 0.00 2.57
3023 4830 1.371183 CGGTGCTTCTCCCTGTTGA 59.629 57.895 0.00 0.00 0.00 3.18
3024 4831 2.328099 GCGGTGCTTCTCCCTGTTG 61.328 63.158 0.00 0.00 0.00 3.33
3025 4832 2.032681 GCGGTGCTTCTCCCTGTT 59.967 61.111 0.00 0.00 0.00 3.16
3026 4833 2.925170 AGCGGTGCTTCTCCCTGT 60.925 61.111 0.00 0.00 33.89 4.00
3027 4834 2.125350 GAGCGGTGCTTCTCCCTG 60.125 66.667 0.00 0.00 39.88 4.45
3028 4835 3.764466 CGAGCGGTGCTTCTCCCT 61.764 66.667 0.00 0.00 39.88 4.20
3029 4836 4.821589 CCGAGCGGTGCTTCTCCC 62.822 72.222 0.00 0.00 39.88 4.30
3041 4848 1.590259 GACCTCTTCATCGCCGAGC 60.590 63.158 0.00 0.00 0.00 5.03
3042 4849 1.066587 GGACCTCTTCATCGCCGAG 59.933 63.158 0.00 0.00 0.00 4.63
3043 4850 1.379977 AGGACCTCTTCATCGCCGA 60.380 57.895 0.00 0.00 0.00 5.54
3044 4851 1.066587 GAGGACCTCTTCATCGCCG 59.933 63.158 14.72 0.00 0.00 6.46
3045 4852 0.537188 TTGAGGACCTCTTCATCGCC 59.463 55.000 22.14 0.00 37.89 5.54
3046 4853 1.646189 GTTGAGGACCTCTTCATCGC 58.354 55.000 22.14 1.71 37.89 4.58
3047 4854 1.914634 CGTTGAGGACCTCTTCATCG 58.085 55.000 22.14 14.26 37.89 3.84
3048 4855 1.205893 AGCGTTGAGGACCTCTTCATC 59.794 52.381 22.14 7.91 35.46 2.92
3049 4856 1.066573 CAGCGTTGAGGACCTCTTCAT 60.067 52.381 22.14 2.35 31.87 2.57
3050 4857 0.318441 CAGCGTTGAGGACCTCTTCA 59.682 55.000 22.14 0.00 0.00 3.02
3051 4858 0.603569 TCAGCGTTGAGGACCTCTTC 59.396 55.000 22.14 13.38 0.00 2.87
3052 4859 1.066573 CATCAGCGTTGAGGACCTCTT 60.067 52.381 22.14 0.70 37.29 2.85
3053 4860 0.534412 CATCAGCGTTGAGGACCTCT 59.466 55.000 22.14 0.00 37.29 3.69
3054 4861 0.460987 CCATCAGCGTTGAGGACCTC 60.461 60.000 15.73 15.13 37.29 3.85
3055 4862 0.904865 TCCATCAGCGTTGAGGACCT 60.905 55.000 15.73 0.00 37.29 3.85
3056 4863 0.179000 ATCCATCAGCGTTGAGGACC 59.821 55.000 15.73 0.00 37.29 4.46
3057 4864 1.576356 GATCCATCAGCGTTGAGGAC 58.424 55.000 15.73 9.12 37.29 3.85
3058 4865 0.103026 CGATCCATCAGCGTTGAGGA 59.897 55.000 15.73 16.97 37.29 3.71
3059 4866 0.103026 TCGATCCATCAGCGTTGAGG 59.897 55.000 8.26 7.60 36.61 3.86
3060 4867 2.057316 GATCGATCCATCAGCGTTGAG 58.943 52.381 14.76 0.23 36.61 3.02
3061 4868 1.600413 CGATCGATCCATCAGCGTTGA 60.600 52.381 19.51 3.86 37.81 3.18
3062 4869 0.780596 CGATCGATCCATCAGCGTTG 59.219 55.000 19.51 0.00 0.00 4.10
3063 4870 0.385751 ACGATCGATCCATCAGCGTT 59.614 50.000 24.34 0.00 30.31 4.84
3064 4871 0.385751 AACGATCGATCCATCAGCGT 59.614 50.000 24.34 9.85 33.75 5.07
3065 4872 0.780596 CAACGATCGATCCATCAGCG 59.219 55.000 24.34 9.19 0.00 5.18
3066 4873 2.140065 TCAACGATCGATCCATCAGC 57.860 50.000 24.34 0.00 0.00 4.26
3067 4874 2.411069 GCATCAACGATCGATCCATCAG 59.589 50.000 24.34 7.70 0.00 2.90
3068 4875 2.224018 TGCATCAACGATCGATCCATCA 60.224 45.455 24.34 9.67 0.00 3.07
3080 4887 1.136000 TCACGAAAGCATGCATCAACG 60.136 47.619 21.98 18.50 0.00 4.10
3081 4888 2.617250 TCACGAAAGCATGCATCAAC 57.383 45.000 21.98 5.45 0.00 3.18
3082 4889 2.292845 TGTTCACGAAAGCATGCATCAA 59.707 40.909 21.98 5.66 0.00 2.57
3083 4890 1.878734 TGTTCACGAAAGCATGCATCA 59.121 42.857 21.98 0.00 0.00 3.07
3084 4891 2.160219 TCTGTTCACGAAAGCATGCATC 59.840 45.455 21.98 16.31 0.00 3.91
3085 4892 2.153645 TCTGTTCACGAAAGCATGCAT 58.846 42.857 21.98 4.57 0.00 3.96
3086 4893 1.532437 CTCTGTTCACGAAAGCATGCA 59.468 47.619 21.98 0.00 0.00 3.96
3087 4894 1.532868 ACTCTGTTCACGAAAGCATGC 59.467 47.619 10.51 10.51 0.00 4.06
3088 4895 3.885484 AACTCTGTTCACGAAAGCATG 57.115 42.857 0.00 0.00 0.00 4.06
3111 4945 3.058224 GGCAGTGTTAGTACAAGCTTTGG 60.058 47.826 0.00 0.00 37.58 3.28
3115 4949 3.833070 AGTAGGCAGTGTTAGTACAAGCT 59.167 43.478 0.00 0.00 37.58 3.74
3125 4959 1.204941 GGATCGACAGTAGGCAGTGTT 59.795 52.381 0.00 0.00 38.48 3.32
3126 4960 0.818296 GGATCGACAGTAGGCAGTGT 59.182 55.000 0.00 0.00 41.16 3.55
3127 4961 0.248661 CGGATCGACAGTAGGCAGTG 60.249 60.000 0.00 0.00 0.00 3.66
3128 4962 0.680280 ACGGATCGACAGTAGGCAGT 60.680 55.000 0.00 0.00 0.00 4.40
3129 4963 0.456221 AACGGATCGACAGTAGGCAG 59.544 55.000 0.00 0.00 0.00 4.85
3130 4964 0.172578 CAACGGATCGACAGTAGGCA 59.827 55.000 0.00 0.00 0.00 4.75
3131 4965 0.527817 CCAACGGATCGACAGTAGGC 60.528 60.000 0.00 0.00 0.00 3.93
3132 4966 0.815734 ACCAACGGATCGACAGTAGG 59.184 55.000 0.00 0.00 0.00 3.18
3133 4967 1.469251 CCACCAACGGATCGACAGTAG 60.469 57.143 0.00 0.00 0.00 2.57
3134 4968 0.528924 CCACCAACGGATCGACAGTA 59.471 55.000 0.00 0.00 0.00 2.74
3135 4969 1.292223 CCACCAACGGATCGACAGT 59.708 57.895 0.00 0.00 0.00 3.55
3136 4970 0.320421 AACCACCAACGGATCGACAG 60.320 55.000 0.00 0.00 0.00 3.51
3137 4971 0.967662 TAACCACCAACGGATCGACA 59.032 50.000 0.00 0.00 0.00 4.35
3138 4972 1.067354 ACTAACCACCAACGGATCGAC 60.067 52.381 0.00 0.00 0.00 4.20
3139 4973 1.259609 ACTAACCACCAACGGATCGA 58.740 50.000 0.00 0.00 0.00 3.59
3140 4974 2.424601 TCTACTAACCACCAACGGATCG 59.575 50.000 0.00 0.00 0.00 3.69
3141 4975 4.369182 CATCTACTAACCACCAACGGATC 58.631 47.826 0.00 0.00 0.00 3.36
3142 4976 3.431766 GCATCTACTAACCACCAACGGAT 60.432 47.826 0.00 0.00 0.00 4.18
3143 4977 2.093869 GCATCTACTAACCACCAACGGA 60.094 50.000 0.00 0.00 0.00 4.69
3144 4978 2.277084 GCATCTACTAACCACCAACGG 58.723 52.381 0.00 0.00 0.00 4.44
3145 4979 1.924524 CGCATCTACTAACCACCAACG 59.075 52.381 0.00 0.00 0.00 4.10
3197 5031 1.012486 CACGTACGACAAAGCCCTCC 61.012 60.000 24.41 0.00 0.00 4.30
3198 5032 1.012486 CCACGTACGACAAAGCCCTC 61.012 60.000 24.41 0.00 0.00 4.30
3199 5033 1.005394 CCACGTACGACAAAGCCCT 60.005 57.895 24.41 0.00 0.00 5.19
3200 5034 2.674084 GCCACGTACGACAAAGCCC 61.674 63.158 24.41 0.00 0.00 5.19
3201 5035 2.858158 GCCACGTACGACAAAGCC 59.142 61.111 24.41 0.00 0.00 4.35
3357 5211 2.421073 GCACATTGAACATAGCAGCAGA 59.579 45.455 0.00 0.00 0.00 4.26
3363 5217 3.837213 ACTGTGCACATTGAACATAGC 57.163 42.857 22.00 0.00 0.00 2.97
3365 5219 3.188254 CCGAACTGTGCACATTGAACATA 59.812 43.478 22.00 0.00 0.00 2.29
3366 5220 2.030893 CCGAACTGTGCACATTGAACAT 60.031 45.455 22.00 0.00 0.00 2.71
3367 5221 1.333308 CCGAACTGTGCACATTGAACA 59.667 47.619 22.00 0.00 0.00 3.18
3386 5258 1.138266 TCAGAGCGGGCTGTAAATACC 59.862 52.381 0.00 0.00 37.20 2.73
3387 5259 2.202566 GTCAGAGCGGGCTGTAAATAC 58.797 52.381 0.00 0.00 37.20 1.89
3413 5285 2.892425 GAGAAGGCGATGCACGGG 60.892 66.667 10.02 0.00 42.83 5.28
3430 5302 0.249784 CGTGCAGAGATCCATCCTGG 60.250 60.000 0.00 0.00 39.43 4.45
3431 5303 0.463204 ACGTGCAGAGATCCATCCTG 59.537 55.000 0.00 0.00 0.00 3.86
3432 5304 0.749649 GACGTGCAGAGATCCATCCT 59.250 55.000 0.00 0.00 0.00 3.24
3433 5305 0.749649 AGACGTGCAGAGATCCATCC 59.250 55.000 0.00 0.00 0.00 3.51
3435 5307 0.749649 GGAGACGTGCAGAGATCCAT 59.250 55.000 0.00 0.00 0.00 3.41
3449 5321 2.050714 TCGCGTGTCGTTGGAGAC 60.051 61.111 5.77 0.00 41.30 3.36
3450 5322 2.050714 GTCGCGTGTCGTTGGAGA 60.051 61.111 5.77 0.00 39.67 3.71
3451 5323 3.458579 CGTCGCGTGTCGTTGGAG 61.459 66.667 5.77 0.00 39.67 3.86
3452 5324 4.986587 CCGTCGCGTGTCGTTGGA 62.987 66.667 14.07 0.00 39.67 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.