AutoCloner

Multiple sequence alignment - TraesCS2A01G581300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G581300	chr2A	100.000	2905	0	0	1	2905	773381303	773378399	0.000000e+00	5365.0
1	TraesCS2A01G581300	chr2A	91.714	350	15	7	960	1309	773302602	773302937	9.420000e-130	473.0
2	TraesCS2A01G581300	chr2A	96.875	32	1	0	183	214	766849383	766849414	1.000000e-03	54.7
3	TraesCS2A01G581300	chr2D	92.428	1981	123	21	931	2905	646054651	646056610	0.000000e+00	2802.0
4	TraesCS2A01G581300	chr2D	90.255	1334	98	18	931	2257	646085304	646083996	0.000000e+00	1714.0
5	TraesCS2A01G581300	chr2D	90.580	966	33	18	1	931	646053454	646054396	0.000000e+00	1227.0
6	TraesCS2A01G581300	chr2B	92.487	1930	128	11	987	2905	789295637	789293714	0.000000e+00	2745.0
7	TraesCS2A01G581300	chr2B	92.475	1927	124	11	987	2905	789405823	789403910	0.000000e+00	2736.0
8	TraesCS2A01G581300	chr2B	92.124	1930	127	11	987	2905	571963202	571961287	0.000000e+00	2699.0
9	TraesCS2A01G581300	chr2B	92.133	1932	122	10	987	2905	789357519	789355605	0.000000e+00	2699.0
10	TraesCS2A01G581300	chr2B	91.869	1931	126	17	987	2905	571850894	571848983	0.000000e+00	2667.0
11	TraesCS2A01G581300	chr2B	91.779	1934	123	11	987	2905	789374618	789372706	0.000000e+00	2658.0
12	TraesCS2A01G581300	chr2B	91.774	1933	120	9	987	2905	789326139	789324232	0.000000e+00	2652.0
13	TraesCS2A01G581300	chr2B	91.517	1945	117	10	987	2905	571993846	571991924	0.000000e+00	2634.0
14	TraesCS2A01G581300	chr2B	91.835	1886	122	9	987	2859	571832860	571830994	0.000000e+00	2601.0
15	TraesCS2A01G581300	chr2B	89.863	947	59	15	1	931	571834090	571833165	0.000000e+00	1182.0
16	TraesCS2A01G581300	chr2B	88.406	966	63	23	1	931	789407080	789406129	0.000000e+00	1118.0
17	TraesCS2A01G581300	chr2B	88.326	968	61	19	1	931	571995105	571994153	0.000000e+00	1114.0
18	TraesCS2A01G581300	chr2B	88.120	968	62	21	1	931	571964459	571963508	0.000000e+00	1101.0
19	TraesCS2A01G581300	chr2B	87.797	967	68	20	1	931	571852151	571851199	0.000000e+00	1086.0
20	TraesCS2A01G581300	chr2B	87.772	965	62	16	1	931	789375865	789374923	0.000000e+00	1077.0
21	TraesCS2A01G581300	chr2B	87.736	954	70	17	1	931	571910473	571909544	0.000000e+00	1070.0
22	TraesCS2A01G581300	chr2B	87.565	965	65	16	1	931	571878015	571877072	0.000000e+00	1066.0
23	TraesCS2A01G581300	chr2B	87.254	965	67	16	1	931	789358767	789357825	0.000000e+00	1050.0
24	TraesCS2A01G581300	chr2B	87.429	708	49	12	1	680	789297116	789296421	0.000000e+00	778.0
25	TraesCS2A01G581300	chr2B	87.234	705	54	9	1	678	789327215	789326520	0.000000e+00	771.0
26	TraesCS2A01G581300	chr2B	90.498	221	13	4	1	213	789425430	789425210	4.740000e-73	285.0
27	TraesCS2A01G581300	chr3A	88.462	52	6	0	162	213	19554654	19554705	2.420000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G581300	chr2A	773378399	773381303	2904	True	5365.0	5365	100.0000	1	2905	1	chr2A.!!$R1	2904
1	TraesCS2A01G581300	chr2D	646053454	646056610	3156	False	2014.5	2802	91.5040	1	2905	2	chr2D.!!$F1	2904
2	TraesCS2A01G581300	chr2D	646083996	646085304	1308	True	1714.0	1714	90.2550	931	2257	1	chr2D.!!$R1	1326
3	TraesCS2A01G581300	chr2B	789403910	789407080	3170	True	1927.0	2736	90.4405	1	2905	2	chr2B.!!$R12	2904
4	TraesCS2A01G581300	chr2B	571961287	571964459	3172	True	1900.0	2699	90.1220	1	2905	2	chr2B.!!$R6	2904
5	TraesCS2A01G581300	chr2B	571830994	571834090	3096	True	1891.5	2601	90.8490	1	2859	2	chr2B.!!$R4	2858
6	TraesCS2A01G581300	chr2B	571848983	571852151	3168	True	1876.5	2667	89.8330	1	2905	2	chr2B.!!$R5	2904
7	TraesCS2A01G581300	chr2B	789355605	789358767	3162	True	1874.5	2699	89.6935	1	2905	2	chr2B.!!$R10	2904
8	TraesCS2A01G581300	chr2B	571991924	571995105	3181	True	1874.0	2634	89.9215	1	2905	2	chr2B.!!$R7	2904
9	TraesCS2A01G581300	chr2B	789372706	789375865	3159	True	1867.5	2658	89.7755	1	2905	2	chr2B.!!$R11	2904
10	TraesCS2A01G581300	chr2B	789293714	789297116	3402	True	1761.5	2745	89.9580	1	2905	2	chr2B.!!$R8	2904
11	TraesCS2A01G581300	chr2B	789324232	789327215	2983	True	1711.5	2652	89.5040	1	2905	2	chr2B.!!$R9	2904
12	TraesCS2A01G581300	chr2B	571909544	571910473	929	True	1070.0	1070	87.7360	1	931	1	chr2B.!!$R2	930
13	TraesCS2A01G581300	chr2B	571877072	571878015	943	True	1066.0	1066	87.5650	1	931	1	chr2B.!!$R1	930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
203	212	0.099968	ACATACGCGCGTACACTCAT	59.900	50.0	41.36	24.99	33.01	2.90	F
219	228	0.934901	TCATCTCTATGAACGCGCGC	60.935	55.0	32.58	23.91	39.20	6.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1791	2418	0.179006	GGGTGCAGGATCTGGAATCC	60.179	60.0	0.0	0.0	32.8	3.01	R
2174	2806	0.838122	CTGGTGGGTGAGGAGAAGGT	60.838	60.0	0.0	0.0	0.0	3.50	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	31	8.129496	AGGTACAACTTTTATGTTATTTGGGG	57.871	34.615	0.00	0.00	32.27	4.96
120	121	5.240891	ACACAGACAATGAATCCTACACAG	58.759	41.667	0.00	0.00	0.00	3.66
147	148	2.925578	TTGGAGACATGTACGTACGG	57.074	50.000	21.06	16.66	42.32	4.02
151	152	3.005684	TGGAGACATGTACGTACGGTTTT	59.994	43.478	21.06	12.73	33.40	2.43
194	203	2.756964	CGCTCATACATACGCGCG	59.243	61.111	30.96	30.96	39.11	6.86
203	212	0.099968	ACATACGCGCGTACACTCAT	59.900	50.000	41.36	24.99	33.01	2.90
216	225	3.071786	ACACTCATCTCTATGAACGCG	57.928	47.619	3.53	3.53	41.57	6.01
217	226	1.783711	CACTCATCTCTATGAACGCGC	59.216	52.381	5.73	0.00	41.57	6.86
218	227	1.048494	CTCATCTCTATGAACGCGCG	58.952	55.000	30.96	30.96	41.57	6.86
219	228	0.934901	TCATCTCTATGAACGCGCGC	60.935	55.000	32.58	23.91	39.20	6.86
237	246	3.202001	GCACGCACACACACACCT	61.202	61.111	0.00	0.00	0.00	4.00
241	250	1.601903	CACGCACACACACACCTTATT	59.398	47.619	0.00	0.00	0.00	1.40
373	385	8.989767	CATCGTCGAAACTTCTGAAATAAATTC	58.010	33.333	0.00	0.00	38.60	2.17
375	387	8.007716	TCGTCGAAACTTCTGAAATAAATTCAC	58.992	33.333	0.00	0.00	43.08	3.18
640	695	7.168972	TGCAATTACCGAACATTTCTGAAAAAG	59.831	33.333	6.95	5.75	0.00	2.27
792	1070	8.235905	ACAGACTCTTGACTACGTACTTATTTC	58.764	37.037	0.00	0.00	0.00	2.17
1066	1665	1.672145	CCGTCGACTTCCCTTCCTTTC	60.672	57.143	14.70	0.00	0.00	2.62
1162	1773	5.721480	TCTCTCTCTCTCTCTCTCTCTCAAA	59.279	44.000	0.00	0.00	0.00	2.69
1314	1926	1.207089	CTCGGCCATTACAACTCCAGA	59.793	52.381	2.24	0.00	0.00	3.86
1442	2064	8.743099	CACTAATACTATATGTTCGTGTGTGTG	58.257	37.037	0.00	0.00	0.00	3.82
1443	2065	6.583912	AATACTATATGTTCGTGTGTGTGC	57.416	37.500	0.00	0.00	0.00	4.57
1556	2178	3.470888	CTTCTGGGCCCGACGGAT	61.471	66.667	19.37	0.00	0.00	4.18
1718	2344	5.199024	TGTATGCATGCATGTTAATTCCC	57.801	39.130	37.43	16.30	37.82	3.97
1815	2442	0.107017	CCAGATCCTGCACCCGAATT	60.107	55.000	0.00	0.00	0.00	2.17
1887	2517	3.549794	GAGAGAAATATGCTTGGCAGGT	58.450	45.455	0.00	0.00	43.65	4.00
1933	2563	6.278363	CCTAAGCCTAACGAAGCACTATTTA	58.722	40.000	0.00	0.00	0.00	1.40
1943	2573	5.168569	CGAAGCACTATTTAGTCACCTTCA	58.831	41.667	15.38	0.00	35.21	3.02
2056	2687	6.658816	TGTTGTATACTTCACCAATGCTCAAT	59.341	34.615	4.17	0.00	0.00	2.57
2082	2713	8.839310	ACTGATTCCACTATTAGTATTGATGC	57.161	34.615	0.00	0.00	0.00	3.91
2138	2770	7.537596	TGGTTTCATGTGAAATAACCATTCT	57.462	32.000	10.98	0.00	44.69	2.40
2198	2830	3.625897	CCTCACCCACCAGCGACA	61.626	66.667	0.00	0.00	0.00	4.35
2226	2858	3.078837	ACATTTAAGCCACCGTCGATTT	58.921	40.909	0.00	0.00	0.00	2.17
2237	2869	1.518774	GTCGATTTGCCCCGTCCTA	59.481	57.895	0.00	0.00	0.00	2.94
2257	2889	2.885113	GCCGCCAAGGTCCATTTC	59.115	61.111	0.00	0.00	43.70	2.17
2265	2897	2.450476	CAAGGTCCATTTCCTTCCCAG	58.550	52.381	0.00	0.00	42.57	4.45
2273	2905	2.673775	TTTCCTTCCCAGTGAATGCA	57.326	45.000	0.00	0.00	31.06	3.96
2282	2914	3.780693	GTGAATGCACGCGCTCTA	58.219	55.556	5.73	0.00	39.64	2.43
2301	2933	5.780984	CTCTACCGGAACTACTTTTCTTGT	58.219	41.667	9.46	0.00	0.00	3.16
2337	2969	6.486253	TTGATGAAGACTTTTGAGGATTCG	57.514	37.500	0.00	0.00	0.00	3.34
2349	2981	3.926616	TGAGGATTCGTTCTTCTTGTCC	58.073	45.455	2.99	0.00	31.86	4.02
2398	3030	4.893524	TCTTCTTCTTTGACCCCTTTTTCC	59.106	41.667	0.00	0.00	0.00	3.13
2407	3039	0.323816	CCCCTTTTTCCAGAGAGGGC	60.324	60.000	1.68	0.00	46.15	5.19
2408	3040	0.701147	CCCTTTTTCCAGAGAGGGCT	59.299	55.000	0.00	0.00	42.18	5.19
2411	3043	2.431454	CTTTTTCCAGAGAGGGCTGTC	58.569	52.381	0.00	0.00	38.24	3.51
2460	3092	2.636647	TGTGGCATGTTCTCTTGTCA	57.363	45.000	0.00	0.00	32.34	3.58
2515	3147	7.926555	TCTTCGAGTCATACTTTGAAGACTTTT	59.073	33.333	15.75	0.00	41.16	2.27
2518	3150	7.709182	TCGAGTCATACTTTGAAGACTTTTCAA	59.291	33.333	0.00	0.00	41.10	2.69
2519	3151	8.335356	CGAGTCATACTTTGAAGACTTTTCAAA	58.665	33.333	12.77	12.77	43.62	2.69
2542	3174	5.380043	AGTGATTTCTCTTGGAAAGCTTCA	58.620	37.500	0.00	0.00	46.71	3.02
2549	3181	5.388654	TCTCTTGGAAAGCTTCAGGAATTT	58.611	37.500	0.00	0.00	45.70	1.82
2555	3187	5.242393	TGGAAAGCTTCAGGAATTTTCTCAG	59.758	40.000	0.00	0.00	30.83	3.35
2567	3200	5.126061	GGAATTTTCTCAGAAGCATAGCCAA	59.874	40.000	0.00	0.00	0.00	4.52
2582	3215	0.877743	GCCAACTCTCTGCCAGTTTC	59.122	55.000	0.00	0.00	31.40	2.78
2601	3234	7.383687	CAGTTTCCTCAACACCATTAGTAGTA	58.616	38.462	0.00	0.00	37.93	1.82
2604	3237	6.921486	TCCTCAACACCATTAGTAGTACAA	57.079	37.500	2.52	0.00	0.00	2.41
2637	3270	4.040829	TCTTCCTCAGATGAAGAAGTTGCA	59.959	41.667	14.04	0.00	43.82	4.08
2676	3309	1.299468	GCGAGGTCGTCCATAGCTG	60.299	63.158	0.00	0.00	42.22	4.24
2701	3334	6.667414	GGGACCATACATATCTCTCTTCTCAT	59.333	42.308	0.00	0.00	0.00	2.90
2746	3379	4.054671	GAGCCTCTCAAGAATATCAACCG	58.945	47.826	0.00	0.00	0.00	4.44
2750	3383	4.993584	CCTCTCAAGAATATCAACCGGATG	59.006	45.833	9.46	7.03	36.72	3.51
2781	3414	7.308830	GCTTTGTAATCAGGACACTCTTGAATT	60.309	37.037	0.00	0.00	36.07	2.17
2782	3415	7.439157	TTGTAATCAGGACACTCTTGAATTG	57.561	36.000	0.00	0.00	36.07	2.32
2808	3441	2.814336	GGCTAAGGTGTCAAAGGAACTG	59.186	50.000	0.00	0.00	40.86	3.16
2822	3455	2.183679	GGAACTGTCCAGAGACCTCAT	58.816	52.381	0.40	0.00	44.26	2.90
2900	3533	1.788229	TTGGAGATATCGGTGAGGCA	58.212	50.000	0.00	0.00	0.00	4.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	31	4.381932	CCAGATCCATGCAAAGGTTTAACC	60.382	45.833	5.91	5.91	38.99	2.85
120	121	1.453155	ACATGTCTCCAATTGGACGC	58.547	50.000	23.63	17.84	39.78	5.19
151	152	2.865551	GGTCTGTACCGTGTTCGAAAAA	59.134	45.455	0.00	0.00	39.71	1.94
194	203	3.969352	CGCGTTCATAGAGATGAGTGTAC	59.031	47.826	0.00	0.00	43.03	2.90
203	212	2.650917	CGCGCGCGTTCATAGAGA	60.651	61.111	42.49	0.00	34.35	3.10
219	228	4.589700	GGTGTGTGTGTGCGTGCG	62.590	66.667	0.00	0.00	0.00	5.34
220	229	1.433053	TAAGGTGTGTGTGTGCGTGC	61.433	55.000	0.00	0.00	0.00	5.34
221	230	1.225855	ATAAGGTGTGTGTGTGCGTG	58.774	50.000	0.00	0.00	0.00	5.34
222	231	1.871039	GAATAAGGTGTGTGTGTGCGT	59.129	47.619	0.00	0.00	0.00	5.24
223	232	1.196808	GGAATAAGGTGTGTGTGTGCG	59.803	52.381	0.00	0.00	0.00	5.34
224	233	2.504367	AGGAATAAGGTGTGTGTGTGC	58.496	47.619	0.00	0.00	0.00	4.57
230	239	5.367937	AGATGCTCATAGGAATAAGGTGTGT	59.632	40.000	0.00	0.00	0.00	3.72
237	246	5.325239	TCTCGGAGATGCTCATAGGAATAA	58.675	41.667	2.97	0.00	33.89	1.40
241	250	2.373502	TCTCTCGGAGATGCTCATAGGA	59.626	50.000	8.39	0.00	33.35	2.94
300	309	2.746277	GACAACGAGGCGCCCAAT	60.746	61.111	26.15	3.93	0.00	3.16
327	337	1.280421	GCACTTTCAGTGGGAGGAGAT	59.720	52.381	6.05	0.00	46.01	2.75
373	385	1.004610	CTGGTGCTCGCATTATTCGTG	60.005	52.381	0.00	0.00	0.00	4.35
375	387	0.583438	CCTGGTGCTCGCATTATTCG	59.417	55.000	0.00	0.00	0.00	3.34
525	577	4.511082	CCCGCTTTCAAAAATTGTTCACAT	59.489	37.500	0.00	0.00	0.00	3.21
640	695	6.039616	TGTTCACAAATTTAAACAGGTCTGC	58.960	36.000	8.21	0.00	0.00	4.26
754	818	4.533707	TCAAGAGTCTGTCTGATTCCCATT	59.466	41.667	0.00	0.00	34.84	3.16
966	1531	4.738740	GGTTTCGTCGATAGTGTTATCTGG	59.261	45.833	0.00	0.00	34.70	3.86
967	1536	5.229469	GTGGTTTCGTCGATAGTGTTATCTG	59.771	44.000	0.00	0.00	34.70	2.90
972	1541	2.322161	CGTGGTTTCGTCGATAGTGTT	58.678	47.619	0.00	0.00	37.40	3.32
973	1542	1.401931	CCGTGGTTTCGTCGATAGTGT	60.402	52.381	0.00	0.00	37.40	3.55
974	1543	1.135603	TCCGTGGTTTCGTCGATAGTG	60.136	52.381	0.00	0.00	37.40	2.74
977	1546	0.179192	CGTCCGTGGTTTCGTCGATA	60.179	55.000	0.00	0.00	0.00	2.92
1066	1665	2.414481	CTCACTGTTTTCTCTGGCGATG	59.586	50.000	0.00	0.00	0.00	3.84
1110	1709	5.766174	AGAGAGAGGAACGTATGGAAGTATC	59.234	44.000	0.00	0.00	0.00	2.24
1268	1880	0.317799	GATGGTGTGCATGTTGGCAA	59.682	50.000	0.00	0.00	46.93	4.52
1314	1926	5.486526	TGACATAAAATACGTACCGGGTTT	58.513	37.500	4.31	0.00	0.00	3.27
1556	2178	0.324614	ATTGTCGTCAGTGGCATCCA	59.675	50.000	0.00	0.00	0.00	3.41
1617	2239	1.810532	GACCACCAGCCGTCTAGAG	59.189	63.158	0.00	0.00	0.00	2.43
1718	2344	7.331687	TCTGTCACATGTCACACATACATAAAG	59.668	37.037	0.00	0.00	36.53	1.85
1791	2418	0.179006	GGGTGCAGGATCTGGAATCC	60.179	60.000	0.00	0.00	32.80	3.01
1815	2442	4.901197	TCCCACAAGTAAACTCAGCATA	57.099	40.909	0.00	0.00	0.00	3.14
1887	2517	5.663106	AGGGTGTCTATCTAAGCATGAAAGA	59.337	40.000	0.00	0.00	0.00	2.52
1916	2546	6.331061	AGGTGACTAAATAGTGCTTCGTTAG	58.669	40.000	0.00	0.00	40.61	2.34
1933	2563	4.163078	AGCAATATACAGCTGAAGGTGACT	59.837	41.667	23.35	7.18	45.66	3.41
1943	2573	6.824305	AAACTGAACAAGCAATATACAGCT	57.176	33.333	0.00	0.00	44.31	4.24
2015	2646	9.582648	AGTATACAACAACCAAAAAGTAATCCT	57.417	29.630	5.50	0.00	0.00	3.24
2056	2687	9.929180	GCATCAATACTAATAGTGGAATCAGTA	57.071	33.333	2.68	0.00	33.75	2.74
2082	2713	1.285641	GACACATGTTGGCCCAACG	59.714	57.895	21.09	10.70	46.13	4.10
2174	2806	0.838122	CTGGTGGGTGAGGAGAAGGT	60.838	60.000	0.00	0.00	0.00	3.50
2198	2830	3.504520	ACGGTGGCTTAAATGTCGATTTT	59.495	39.130	0.00	0.00	33.63	1.82
2216	2848	3.945304	GACGGGGCAAATCGACGGT	62.945	63.158	0.00	0.00	0.00	4.83
2237	2869	2.837031	AAATGGACCTTGGCGGCGAT	62.837	55.000	12.98	0.00	35.61	4.58
2257	2889	1.926511	GCGTGCATTCACTGGGAAGG	61.927	60.000	0.00	0.00	40.99	3.46
2265	2897	1.345176	GTAGAGCGCGTGCATTCAC	59.655	57.895	24.79	11.18	46.23	3.18
2273	2905	1.746615	TAGTTCCGGTAGAGCGCGT	60.747	57.895	8.43	0.00	0.00	6.01
2275	2907	0.455005	AAGTAGTTCCGGTAGAGCGC	59.545	55.000	0.00	0.00	0.00	5.92
2276	2908	2.935481	AAAGTAGTTCCGGTAGAGCG	57.065	50.000	0.00	0.00	0.00	5.03
2282	2914	4.100498	TCTCACAAGAAAAGTAGTTCCGGT	59.900	41.667	0.00	0.00	0.00	5.28
2301	2933	8.859236	AAGTCTTCATCAAAATCTTCATCTCA	57.141	30.769	0.00	0.00	0.00	3.27
2328	2960	3.578716	AGGACAAGAAGAACGAATCCTCA	59.421	43.478	0.00	0.00	28.75	3.86
2337	2969	4.592485	TGACTCTGAGGACAAGAAGAAC	57.408	45.455	9.85	0.00	0.00	3.01
2398	3030	1.674764	ATCGCTGACAGCCCTCTCTG	61.675	60.000	21.55	5.91	38.18	3.35
2407	3039	0.940126	GGCCATTACATCGCTGACAG	59.060	55.000	0.00	0.00	0.00	3.51
2408	3040	0.541392	AGGCCATTACATCGCTGACA	59.459	50.000	5.01	0.00	0.00	3.58
2411	3043	1.789078	GCCAGGCCATTACATCGCTG	61.789	60.000	5.01	0.00	0.00	5.18
2431	3063	3.810941	AGAACATGCCACAAATGCAAAAG	59.189	39.130	0.00	0.00	42.92	2.27
2515	3147	5.829924	AGCTTTCCAAGAGAAATCACTTTGA	59.170	36.000	0.00	0.00	43.50	2.69
2518	3150	5.829924	TGAAGCTTTCCAAGAGAAATCACTT	59.170	36.000	0.00	0.00	43.50	3.16
2519	3151	5.380043	TGAAGCTTTCCAAGAGAAATCACT	58.620	37.500	0.00	0.00	43.50	3.41
2542	3174	4.886489	GGCTATGCTTCTGAGAAAATTCCT	59.114	41.667	0.00	0.00	0.00	3.36
2549	3181	3.517100	AGAGTTGGCTATGCTTCTGAGAA	59.483	43.478	0.00	0.00	0.00	2.87
2555	3187	1.939255	GCAGAGAGTTGGCTATGCTTC	59.061	52.381	0.00	0.00	46.56	3.86
2567	3200	1.722034	TGAGGAAACTGGCAGAGAGT	58.278	50.000	23.66	2.38	44.43	3.24
2582	3215	9.314321	CTAATTGTACTACTAATGGTGTTGAGG	57.686	37.037	0.00	0.00	0.00	3.86
2601	3234	6.305272	TCTGAGGAAGAAGCATCTAATTGT	57.695	37.500	0.00	0.00	33.77	2.71
2604	3237	6.744175	TCATCTGAGGAAGAAGCATCTAAT	57.256	37.500	0.00	0.00	38.79	1.73
2676	3309	6.013379	TGAGAAGAGAGATATGTATGGTCCC	58.987	44.000	0.00	0.00	0.00	4.46
2701	3334	7.414873	GCTCAATACTCATGAATTTCAGCAAGA	60.415	37.037	5.21	0.45	0.00	3.02
2742	3375	1.981256	ACAAAGCACTTCATCCGGTT	58.019	45.000	0.00	0.00	0.00	4.44
2743	3376	2.851263	TACAAAGCACTTCATCCGGT	57.149	45.000	0.00	0.00	0.00	5.28
2746	3379	4.943705	TCCTGATTACAAAGCACTTCATCC	59.056	41.667	0.00	0.00	0.00	3.51
2750	3383	4.757149	AGTGTCCTGATTACAAAGCACTTC	59.243	41.667	0.00	0.00	32.84	3.01
2781	3414	1.429930	TTGACACCTTAGCCCTGACA	58.570	50.000	0.00	0.00	0.00	3.58
2782	3415	2.427506	CTTTGACACCTTAGCCCTGAC	58.572	52.381	0.00	0.00	0.00	3.51
2808	3441	5.096443	AGAAATTGATGAGGTCTCTGGAC	57.904	43.478	0.00	0.00	41.43	4.02
2822	3455	6.716173	TGATCATGAGGTTGTGAAGAAATTGA	59.284	34.615	0.09	0.00	0.00	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.