Multiple sequence alignment - TraesCS2A01G580400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G580400 chr2A 100.000 6353 0 0 1 6353 772684574 772690926 0.000000e+00 11732.0
1 TraesCS2A01G580400 chr2A 87.008 1601 169 21 4178 5763 772741566 772743142 0.000000e+00 1768.0
2 TraesCS2A01G580400 chr2A 82.319 2087 297 37 2127 4156 772739500 772741571 0.000000e+00 1744.0
3 TraesCS2A01G580400 chr2A 88.870 1204 110 12 579 1761 772737049 772738249 0.000000e+00 1459.0
4 TraesCS2A01G580400 chr2A 88.192 271 17 2 32 302 772736646 772736901 6.190000e-80 309.0
5 TraesCS2A01G580400 chr2B 87.054 1962 194 31 4230 6161 788030234 788032165 0.000000e+00 2161.0
6 TraesCS2A01G580400 chr2B 87.453 1602 165 20 4178 5763 788019849 788021430 0.000000e+00 1812.0
7 TraesCS2A01G580400 chr2B 81.944 2099 295 42 2127 4156 788017771 788019854 0.000000e+00 1700.0
8 TraesCS2A01G580400 chr2B 87.229 1198 115 20 592 1761 788015333 788016520 0.000000e+00 1330.0
9 TraesCS2A01G580400 chr2B 84.546 1223 166 14 2473 3683 788028632 788029843 0.000000e+00 1190.0
10 TraesCS2A01G580400 chr2B 84.010 1157 148 24 2542 3682 787869781 787868646 0.000000e+00 1077.0
11 TraesCS2A01G580400 chr2B 84.166 941 121 11 3834 4751 787860918 787859983 0.000000e+00 887.0
12 TraesCS2A01G580400 chr2B 80.023 861 125 24 831 1656 788026725 788027573 1.530000e-165 593.0
13 TraesCS2A01G580400 chr2B 80.828 652 100 18 975 1613 794101908 794102547 7.400000e-134 488.0
14 TraesCS2A01G580400 chr2B 80.828 652 100 18 975 1613 794110508 794111147 7.400000e-134 488.0
15 TraesCS2A01G580400 chr2B 85.065 308 32 8 1 302 788014871 788015170 1.040000e-77 302.0
16 TraesCS2A01G580400 chr2B 76.038 626 96 38 4856 5443 787859983 787859374 6.270000e-70 276.0
17 TraesCS2A01G580400 chr2B 90.000 130 13 0 289 418 788015185 788015314 1.100000e-37 169.0
18 TraesCS2A01G580400 chr2B 82.564 195 18 11 6086 6275 788022134 788022317 2.370000e-34 158.0
19 TraesCS2A01G580400 chr2B 79.570 186 24 11 3676 3848 787868222 787868038 3.110000e-23 121.0
20 TraesCS2A01G580400 chr2B 82.051 117 10 5 593 698 788026258 788026374 8.770000e-14 89.8
21 TraesCS2A01G580400 chr2D 83.943 1532 172 37 592 2077 647807372 647805869 0.000000e+00 1399.0
22 TraesCS2A01G580400 chr2D 79.688 1605 260 37 2128 3684 636066901 636068487 0.000000e+00 1098.0
23 TraesCS2A01G580400 chr2D 85.267 767 84 14 4988 5733 647802940 647802182 0.000000e+00 763.0
24 TraesCS2A01G580400 chr2D 76.435 1307 207 61 592 1850 636064659 636065912 1.170000e-171 614.0
25 TraesCS2A01G580400 chr2D 86.838 585 32 21 5773 6346 647801545 647800995 4.210000e-171 612.0
26 TraesCS2A01G580400 chr2D 81.934 393 57 7 3777 4156 636068532 636068923 2.860000e-83 320.0
27 TraesCS2A01G580400 chr2D 87.823 271 19 1 32 302 647807789 647807533 8.000000e-79 305.0
28 TraesCS2A01G580400 chr2D 78.423 482 55 22 5059 5515 636069341 636069798 1.050000e-67 268.0
29 TraesCS2A01G580400 chr2D 92.398 171 10 3 417 586 362930970 362930802 2.290000e-59 241.0
30 TraesCS2A01G580400 chr2D 91.603 131 9 1 289 419 647807518 647807390 5.060000e-41 180.0
31 TraesCS2A01G580400 chr2D 85.034 147 19 1 4803 4949 636069189 636069332 5.130000e-31 147.0
32 TraesCS2A01G580400 chr1D 93.293 164 9 2 417 579 338937211 338937373 2.290000e-59 241.0
33 TraesCS2A01G580400 chr1D 92.683 164 10 2 418 580 463382066 463381904 1.060000e-57 235.0
34 TraesCS2A01G580400 chr3D 92.216 167 11 2 418 583 537154702 537154867 1.060000e-57 235.0
35 TraesCS2A01G580400 chr3D 91.716 169 11 3 416 582 612268612 612268445 1.380000e-56 231.0
36 TraesCS2A01G580400 chr3D 75.694 432 86 15 1037 1454 545154013 545154439 1.400000e-46 198.0
37 TraesCS2A01G580400 chr3D 76.238 404 76 13 1003 1392 544822005 544822402 5.020000e-46 196.0
38 TraesCS2A01G580400 chr4A 92.121 165 11 2 417 580 517406633 517406470 1.380000e-56 231.0
39 TraesCS2A01G580400 chr5D 92.073 164 11 2 417 579 53583076 53583238 4.950000e-56 230.0
40 TraesCS2A01G580400 chr4B 90.698 172 14 2 417 587 446769110 446769280 1.780000e-55 228.0
41 TraesCS2A01G580400 chr6D 88.950 181 17 3 401 580 431160845 431160667 2.980000e-53 220.0
42 TraesCS2A01G580400 chrUn 80.201 298 47 6 1013 1301 91005203 91004909 4.990000e-51 213.0
43 TraesCS2A01G580400 chrUn 80.201 298 47 6 1013 1301 91112399 91112105 4.990000e-51 213.0
44 TraesCS2A01G580400 chr3B 76.883 385 68 11 1037 1406 721044069 721044447 1.400000e-46 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G580400 chr2A 772684574 772690926 6352 False 11732.00 11732 100.00000 1 6353 1 chr2A.!!$F1 6352
1 TraesCS2A01G580400 chr2A 772736646 772743142 6496 False 1320.00 1768 86.59725 32 5763 4 chr2A.!!$F2 5731
2 TraesCS2A01G580400 chr2B 788014871 788032165 17294 False 950.48 2161 84.79290 1 6275 10 chr2B.!!$F3 6274
3 TraesCS2A01G580400 chr2B 787868038 787869781 1743 True 599.00 1077 81.79000 2542 3848 2 chr2B.!!$R2 1306
4 TraesCS2A01G580400 chr2B 787859374 787860918 1544 True 581.50 887 80.10200 3834 5443 2 chr2B.!!$R1 1609
5 TraesCS2A01G580400 chr2B 794101908 794102547 639 False 488.00 488 80.82800 975 1613 1 chr2B.!!$F1 638
6 TraesCS2A01G580400 chr2B 794110508 794111147 639 False 488.00 488 80.82800 975 1613 1 chr2B.!!$F2 638
7 TraesCS2A01G580400 chr2D 647800995 647807789 6794 True 651.80 1399 87.09480 32 6346 5 chr2D.!!$R2 6314
8 TraesCS2A01G580400 chr2D 636064659 636069798 5139 False 489.40 1098 80.30280 592 5515 5 chr2D.!!$F1 4923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 468 0.185416 TCATCCCGTCTACTCCCTCC 59.815 60.0 0.00 0.0 0.0 4.30 F
1675 1802 0.037232 GTGAGTTCGGAGGTGAAGGG 60.037 60.0 0.00 0.0 0.0 3.95 F
1908 3080 0.109458 CGTCTTCGTCGATGTCCCAA 60.109 55.0 4.21 0.0 0.0 4.12 F
2875 4236 0.094216 CTTCGCGACATCTTGTGCAG 59.906 55.0 9.15 0.0 0.0 4.41 F
3817 5647 0.033504 GGTCTGAAGCGTCTGTTGGA 59.966 55.0 0.31 0.0 0.0 3.53 F
4175 6059 0.106149 AAACGTGCCCCGAGGATATC 59.894 55.0 0.00 0.0 40.7 1.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 3246 0.037326 TGCGTTGACATCCACTCCTC 60.037 55.0 0.00 0.00 0.00 3.71 R
2847 4208 0.108186 ATGTCGCGAAGAATCTGGCA 60.108 50.0 12.06 0.55 0.00 4.92 R
3093 4454 0.321653 AAGGTTGACCGTCTCATGGC 60.322 55.0 0.00 0.00 42.08 4.40 R
4159 6043 0.105964 TTTGATATCCTCGGGGCACG 59.894 55.0 0.68 0.68 46.11 5.34 R
4892 6779 0.190069 TAGGGACACTGTCACCACCT 59.810 55.0 7.87 8.57 36.49 4.00 R
5881 18795 0.026803 GCGTCGCATTGTCCTGAATC 59.973 55.0 13.44 0.00 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.346395 ACTGTAACAGTGGGCGATGAA 59.654 47.619 0.00 0.00 43.63 2.57
34 35 4.279169 AGTGGGCGATGAATCAATTAATGG 59.721 41.667 0.00 0.00 0.00 3.16
66 67 2.738846 CAGAAGACCAAAGATGACACGG 59.261 50.000 0.00 0.00 0.00 4.94
102 103 2.162681 GGTTGCTTGCAGAACTATGGT 58.837 47.619 0.00 0.00 0.00 3.55
154 163 3.706055 TGGTCAGTGAGAACAAGGC 57.294 52.632 0.00 0.00 42.11 4.35
163 172 1.280133 TGAGAACAAGGCCATCTCAGG 59.720 52.381 20.17 0.00 43.35 3.86
179 189 3.580022 TCTCAGGAACATCTTCTGCAAGA 59.420 43.478 0.00 0.00 44.68 3.02
199 209 3.586174 AGAGGTACCAAAGACCCTTTACC 59.414 47.826 15.94 0.00 37.73 2.85
203 213 4.202493 GGTACCAAAGACCCTTTACCTTGA 60.202 45.833 7.15 0.00 0.00 3.02
231 241 4.415150 ACTGATGCACCCAGGCCG 62.415 66.667 18.64 0.00 36.03 6.13
264 277 9.204570 GCTTGGAGCTAATTTTCGAAGTATATA 57.795 33.333 0.00 0.00 38.45 0.86
287 300 0.250727 CCCGTTTGCTTCTCTTCCCA 60.251 55.000 0.00 0.00 0.00 4.37
328 370 6.356714 GCCTGCATTTTAAAACAAAACATTCG 59.643 34.615 1.97 0.00 0.00 3.34
348 390 5.995282 ATTCGTCAGAATGTGGAAAACACTA 59.005 36.000 0.00 0.00 44.76 2.74
377 419 3.306502 CCATCCTGCTTGCAACTGATTTT 60.307 43.478 0.00 0.00 0.00 1.82
385 427 5.045872 GCTTGCAACTGATTTTGAAAGACT 58.954 37.500 7.62 0.00 42.74 3.24
421 463 4.608951 GTGTAATGTCATCCCGTCTACTC 58.391 47.826 0.00 0.00 0.00 2.59
423 465 1.705873 ATGTCATCCCGTCTACTCCC 58.294 55.000 0.00 0.00 0.00 4.30
424 466 0.629596 TGTCATCCCGTCTACTCCCT 59.370 55.000 0.00 0.00 0.00 4.20
425 467 1.320507 GTCATCCCGTCTACTCCCTC 58.679 60.000 0.00 0.00 0.00 4.30
426 468 0.185416 TCATCCCGTCTACTCCCTCC 59.815 60.000 0.00 0.00 0.00 4.30
427 469 1.150992 ATCCCGTCTACTCCCTCCG 59.849 63.158 0.00 0.00 0.00 4.63
429 471 1.379576 CCCGTCTACTCCCTCCGTT 60.380 63.158 0.00 0.00 0.00 4.44
431 473 1.382692 CCGTCTACTCCCTCCGTTCC 61.383 65.000 0.00 0.00 0.00 3.62
432 474 0.394080 CGTCTACTCCCTCCGTTCCT 60.394 60.000 0.00 0.00 0.00 3.36
433 475 1.134280 CGTCTACTCCCTCCGTTCCTA 60.134 57.143 0.00 0.00 0.00 2.94
434 476 2.681976 CGTCTACTCCCTCCGTTCCTAA 60.682 54.545 0.00 0.00 0.00 2.69
436 478 3.959449 GTCTACTCCCTCCGTTCCTAAAT 59.041 47.826 0.00 0.00 0.00 1.40
437 479 5.136105 GTCTACTCCCTCCGTTCCTAAATA 58.864 45.833 0.00 0.00 0.00 1.40
438 480 5.241285 GTCTACTCCCTCCGTTCCTAAATAG 59.759 48.000 0.00 0.00 0.00 1.73
439 481 4.261411 ACTCCCTCCGTTCCTAAATAGA 57.739 45.455 0.00 0.00 0.00 1.98
440 482 4.617593 ACTCCCTCCGTTCCTAAATAGAA 58.382 43.478 0.00 0.00 0.00 2.10
441 483 4.650131 ACTCCCTCCGTTCCTAAATAGAAG 59.350 45.833 0.00 0.00 0.00 2.85
442 484 4.617593 TCCCTCCGTTCCTAAATAGAAGT 58.382 43.478 0.00 0.00 0.00 3.01
443 485 4.648307 TCCCTCCGTTCCTAAATAGAAGTC 59.352 45.833 0.00 0.00 0.00 3.01
444 486 4.202233 CCCTCCGTTCCTAAATAGAAGTCC 60.202 50.000 0.00 0.00 0.00 3.85
445 487 4.650131 CCTCCGTTCCTAAATAGAAGTCCT 59.350 45.833 0.00 0.00 0.00 3.85
446 488 5.128991 CCTCCGTTCCTAAATAGAAGTCCTT 59.871 44.000 0.00 0.00 0.00 3.36
447 489 6.351966 CCTCCGTTCCTAAATAGAAGTCCTTT 60.352 42.308 0.00 0.00 0.00 3.11
448 490 7.012661 TCCGTTCCTAAATAGAAGTCCTTTT 57.987 36.000 0.00 0.00 0.00 2.27
449 491 8.137745 TCCGTTCCTAAATAGAAGTCCTTTTA 57.862 34.615 0.00 0.00 0.00 1.52
450 492 8.255905 TCCGTTCCTAAATAGAAGTCCTTTTAG 58.744 37.037 0.00 0.00 33.47 1.85
451 493 8.255905 CCGTTCCTAAATAGAAGTCCTTTTAGA 58.744 37.037 10.16 0.00 34.90 2.10
452 494 9.303537 CGTTCCTAAATAGAAGTCCTTTTAGAG 57.696 37.037 10.16 4.14 34.90 2.43
459 501 8.729805 AATAGAAGTCCTTTTAGAGATTGCAG 57.270 34.615 0.00 0.00 0.00 4.41
460 502 6.120507 AGAAGTCCTTTTAGAGATTGCAGT 57.879 37.500 0.00 0.00 0.00 4.40
461 503 7.246171 AGAAGTCCTTTTAGAGATTGCAGTA 57.754 36.000 0.00 0.00 0.00 2.74
462 504 7.100409 AGAAGTCCTTTTAGAGATTGCAGTAC 58.900 38.462 0.00 0.00 0.00 2.73
463 505 6.360370 AGTCCTTTTAGAGATTGCAGTACA 57.640 37.500 0.00 0.00 0.00 2.90
464 506 6.769512 AGTCCTTTTAGAGATTGCAGTACAA 58.230 36.000 0.00 0.00 44.01 2.41
465 507 7.224297 AGTCCTTTTAGAGATTGCAGTACAAA 58.776 34.615 0.00 0.00 42.86 2.83
466 508 7.173390 AGTCCTTTTAGAGATTGCAGTACAAAC 59.827 37.037 0.00 0.00 42.86 2.93
467 509 7.173390 GTCCTTTTAGAGATTGCAGTACAAACT 59.827 37.037 0.00 0.00 43.46 2.66
468 510 8.372459 TCCTTTTAGAGATTGCAGTACAAACTA 58.628 33.333 0.00 0.00 41.09 2.24
469 511 9.167311 CCTTTTAGAGATTGCAGTACAAACTAT 57.833 33.333 0.00 0.00 41.09 2.12
475 517 8.082852 AGAGATTGCAGTACAAACTATATACGG 58.917 37.037 0.00 0.00 41.09 4.02
476 518 7.152645 AGATTGCAGTACAAACTATATACGGG 58.847 38.462 0.00 0.00 42.86 5.28
477 519 5.857471 TGCAGTACAAACTATATACGGGT 57.143 39.130 0.00 0.00 33.48 5.28
478 520 5.593968 TGCAGTACAAACTATATACGGGTG 58.406 41.667 0.00 0.00 33.48 4.61
479 521 5.127519 TGCAGTACAAACTATATACGGGTGT 59.872 40.000 0.00 0.00 33.48 4.16
480 522 6.320926 TGCAGTACAAACTATATACGGGTGTA 59.679 38.462 0.00 0.00 33.48 2.90
481 523 7.014518 TGCAGTACAAACTATATACGGGTGTAT 59.985 37.037 0.00 0.00 38.44 2.29
482 524 7.327761 GCAGTACAAACTATATACGGGTGTATG 59.672 40.741 0.00 0.00 36.81 2.39
483 525 8.355169 CAGTACAAACTATATACGGGTGTATGT 58.645 37.037 0.00 0.00 36.81 2.29
484 526 9.573166 AGTACAAACTATATACGGGTGTATGTA 57.427 33.333 0.00 0.00 36.68 2.29
492 534 7.928307 ATATACGGGTGTATGTAGACGTATT 57.072 36.000 11.89 0.23 42.64 1.89
493 535 4.989279 ACGGGTGTATGTAGACGTATTT 57.011 40.909 0.00 0.00 32.30 1.40
494 536 5.329035 ACGGGTGTATGTAGACGTATTTT 57.671 39.130 0.00 0.00 32.30 1.82
495 537 6.449635 ACGGGTGTATGTAGACGTATTTTA 57.550 37.500 0.00 0.00 32.30 1.52
496 538 6.498304 ACGGGTGTATGTAGACGTATTTTAG 58.502 40.000 0.00 0.00 32.30 1.85
497 539 6.318648 ACGGGTGTATGTAGACGTATTTTAGA 59.681 38.462 0.00 0.00 32.30 2.10
498 540 7.013655 ACGGGTGTATGTAGACGTATTTTAGAT 59.986 37.037 0.00 0.00 32.30 1.98
499 541 7.325338 CGGGTGTATGTAGACGTATTTTAGATG 59.675 40.741 0.00 0.00 0.00 2.90
500 542 8.139989 GGGTGTATGTAGACGTATTTTAGATGT 58.860 37.037 0.00 0.00 0.00 3.06
521 563 8.897752 AGATGTAGATTTACTCAATTTTGCTCC 58.102 33.333 0.00 0.00 0.00 4.70
522 564 7.072177 TGTAGATTTACTCAATTTTGCTCCG 57.928 36.000 0.00 0.00 0.00 4.63
523 565 6.653320 TGTAGATTTACTCAATTTTGCTCCGT 59.347 34.615 0.00 0.00 0.00 4.69
524 566 7.820386 TGTAGATTTACTCAATTTTGCTCCGTA 59.180 33.333 0.00 0.00 0.00 4.02
525 567 7.865706 AGATTTACTCAATTTTGCTCCGTAT 57.134 32.000 0.00 0.00 0.00 3.06
526 568 7.697691 AGATTTACTCAATTTTGCTCCGTATG 58.302 34.615 0.00 0.00 0.00 2.39
527 569 6.811253 TTTACTCAATTTTGCTCCGTATGT 57.189 33.333 0.00 0.00 0.00 2.29
528 570 7.908827 TTTACTCAATTTTGCTCCGTATGTA 57.091 32.000 0.00 0.00 0.00 2.29
529 571 7.534085 TTACTCAATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
530 572 5.488341 ACTCAATTTTGCTCCGTATGTAGT 58.512 37.500 0.00 0.00 0.00 2.73
531 573 5.581085 ACTCAATTTTGCTCCGTATGTAGTC 59.419 40.000 0.00 0.00 0.00 2.59
532 574 4.873827 TCAATTTTGCTCCGTATGTAGTCC 59.126 41.667 0.00 0.00 0.00 3.85
533 575 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
534 576 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
535 577 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
536 578 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
537 579 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
538 580 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
539 581 3.057456 GCTCCGTATGTAGTCCATAGTGG 60.057 52.174 0.00 0.00 36.71 4.00
540 582 4.395625 CTCCGTATGTAGTCCATAGTGGA 58.604 47.826 0.00 0.00 45.98 4.02
554 596 7.113658 TCCATAGTGGAATCTCTACAAAGAC 57.886 40.000 0.00 0.00 45.00 3.01
555 597 6.897966 TCCATAGTGGAATCTCTACAAAGACT 59.102 38.462 0.00 0.00 45.00 3.24
556 598 7.400339 TCCATAGTGGAATCTCTACAAAGACTT 59.600 37.037 0.00 0.00 45.00 3.01
557 599 8.696374 CCATAGTGGAATCTCTACAAAGACTTA 58.304 37.037 0.00 0.00 40.96 2.24
572 614 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
573 615 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
574 616 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
575 617 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
576 618 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
577 619 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
578 620 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
579 621 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
580 622 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
581 623 4.591321 TTTAGGAACGGAGGGAGTACTA 57.409 45.455 0.00 0.00 0.00 1.82
582 624 2.433662 AGGAACGGAGGGAGTACTAC 57.566 55.000 0.00 0.00 0.00 2.73
583 625 1.921748 AGGAACGGAGGGAGTACTACT 59.078 52.381 4.77 1.85 0.00 2.57
584 626 2.311243 AGGAACGGAGGGAGTACTACTT 59.689 50.000 4.77 0.00 0.00 2.24
585 627 3.095332 GGAACGGAGGGAGTACTACTTT 58.905 50.000 4.77 0.00 0.00 2.66
586 628 4.018050 AGGAACGGAGGGAGTACTACTTTA 60.018 45.833 4.77 0.00 0.00 1.85
587 629 4.337836 GGAACGGAGGGAGTACTACTTTAG 59.662 50.000 4.77 0.00 0.00 1.85
588 630 4.851639 ACGGAGGGAGTACTACTTTAGA 57.148 45.455 4.77 0.00 0.00 2.10
589 631 4.522114 ACGGAGGGAGTACTACTTTAGAC 58.478 47.826 4.77 0.00 0.00 2.59
590 632 4.227073 ACGGAGGGAGTACTACTTTAGACT 59.773 45.833 4.77 0.00 0.00 3.24
701 747 3.245586 TGGGTAATGGGTTCATGCTCTTT 60.246 43.478 0.00 0.00 33.18 2.52
1183 1271 0.250901 TTCCTGGCAAACCTCTCTGC 60.251 55.000 0.00 0.00 37.86 4.26
1184 1272 1.073722 CCTGGCAAACCTCTCTGCA 59.926 57.895 0.00 0.00 40.46 4.41
1287 1375 1.147824 CTCTACCTCTACCGCGGGA 59.852 63.158 31.76 22.81 0.00 5.14
1316 1404 3.966543 CACCGGCCCAAGGAAGGT 61.967 66.667 0.00 0.00 35.13 3.50
1338 1426 3.636231 CCCGTTGCCTCTGGTGGA 61.636 66.667 0.00 0.00 0.00 4.02
1341 1429 1.071471 CGTTGCCTCTGGTGGACTT 59.929 57.895 0.00 0.00 0.00 3.01
1351 1439 2.360475 GTGGACTTCCTGGCTGCC 60.360 66.667 12.87 12.87 36.82 4.85
1352 1440 2.853542 TGGACTTCCTGGCTGCCA 60.854 61.111 21.96 21.96 36.82 4.92
1355 1443 4.335647 ACTTCCTGGCTGCCACGG 62.336 66.667 19.30 21.79 0.00 4.94
1409 1497 3.378399 GAGGGAGCTCAAGGACCGC 62.378 68.421 17.19 4.96 0.00 5.68
1414 1502 3.127533 GCTCAAGGACCGCGCATT 61.128 61.111 8.75 0.00 0.00 3.56
1422 1510 2.046411 ACCGCGCATTGGACATCA 60.046 55.556 8.75 0.00 0.00 3.07
1435 1523 1.970917 GACATCAGCAACCGCCGAAG 61.971 60.000 0.00 0.00 39.83 3.79
1486 1586 2.688666 ATCTTCGAGGGCTGGGCA 60.689 61.111 0.00 0.00 0.00 5.36
1487 1587 2.739996 ATCTTCGAGGGCTGGGCAG 61.740 63.158 0.00 0.00 0.00 4.85
1545 1651 6.269769 AGACCATGAAGAAGAAGAAGAAGACT 59.730 38.462 0.00 0.00 0.00 3.24
1548 1654 7.234577 ACCATGAAGAAGAAGAAGAAGACTACT 59.765 37.037 0.00 0.00 0.00 2.57
1558 1664 5.725362 AGAAGAAGACTACTACCAACATGC 58.275 41.667 0.00 0.00 0.00 4.06
1561 1667 3.895232 AGACTACTACCAACATGCTGG 57.105 47.619 13.73 13.73 42.68 4.85
1592 1698 0.846693 AGGTGGCCTTATCCATGACC 59.153 55.000 3.32 0.00 38.57 4.02
1615 1727 2.295885 CATGAGGATGGACAAGGAAGC 58.704 52.381 0.00 0.00 0.00 3.86
1626 1738 3.254892 GACAAGGAAGCCTACTTTCGAG 58.745 50.000 0.00 0.00 36.41 4.04
1627 1739 2.897969 ACAAGGAAGCCTACTTTCGAGA 59.102 45.455 0.00 0.00 36.41 4.04
1628 1740 3.323979 ACAAGGAAGCCTACTTTCGAGAA 59.676 43.478 0.00 0.00 36.41 2.87
1646 1758 4.630111 GAGAAAGGCTAGATGACTGGATG 58.370 47.826 0.00 0.00 31.76 3.51
1659 1771 1.306568 TGGATGGGATCGGTGGTGA 60.307 57.895 0.00 0.00 0.00 4.02
1660 1772 1.337384 TGGATGGGATCGGTGGTGAG 61.337 60.000 0.00 0.00 0.00 3.51
1661 1773 1.338136 GGATGGGATCGGTGGTGAGT 61.338 60.000 0.00 0.00 0.00 3.41
1662 1774 0.541863 GATGGGATCGGTGGTGAGTT 59.458 55.000 0.00 0.00 0.00 3.01
1675 1802 0.037232 GTGAGTTCGGAGGTGAAGGG 60.037 60.000 0.00 0.00 0.00 3.95
1683 1810 1.683917 CGGAGGTGAAGGGAGACATAG 59.316 57.143 0.00 0.00 0.00 2.23
1705 1832 0.652592 CCGAATGCGACAGGATCAAC 59.347 55.000 0.00 0.00 40.82 3.18
1706 1833 1.358877 CGAATGCGACAGGATCAACA 58.641 50.000 0.00 0.00 40.82 3.33
1753 1880 1.065491 ACTACCATGCATCGCCTTTGA 60.065 47.619 0.00 0.00 0.00 2.69
1764 1891 1.076332 CGCCTTTGAGGTAACGAAGG 58.924 55.000 0.00 0.00 44.04 3.46
1773 1912 1.588082 GTAACGAAGGCCGAGGACA 59.412 57.895 0.00 0.00 41.76 4.02
1786 1925 2.737376 GGACACCGACCGTCTTGC 60.737 66.667 0.00 0.00 33.73 4.01
1801 1940 0.804989 CTTGCGCTTAAAGTCCTGGG 59.195 55.000 9.73 0.00 0.00 4.45
1807 1946 1.073098 CTTAAAGTCCTGGGGGTGGT 58.927 55.000 0.00 0.00 0.00 4.16
1813 1952 0.252558 GTCCTGGGGGTGGTAGAAGA 60.253 60.000 0.00 0.00 0.00 2.87
1832 1971 6.306987 AGAAGACTATTTCAAGAGGGCAAAA 58.693 36.000 0.00 0.00 0.00 2.44
1850 1989 4.933400 GCAAAAGACGTCCAAGATAAGGTA 59.067 41.667 13.01 0.00 0.00 3.08
1853 2525 3.633418 AGACGTCCAAGATAAGGTAGCT 58.367 45.455 13.01 0.00 0.00 3.32
1858 2530 3.107601 TCCAAGATAAGGTAGCTGTGCT 58.892 45.455 0.00 0.00 43.41 4.40
1883 3037 0.250338 AGAACAAGGACGCTGGGAAC 60.250 55.000 0.00 0.00 0.00 3.62
1901 3073 3.364062 GAACATCATCGTCTTCGTCGAT 58.636 45.455 0.00 0.00 46.70 3.59
1907 3079 0.956902 TCGTCTTCGTCGATGTCCCA 60.957 55.000 4.21 0.00 38.33 4.37
1908 3080 0.109458 CGTCTTCGTCGATGTCCCAA 60.109 55.000 4.21 0.00 0.00 4.12
1924 3096 1.556564 CCAACGGTGCACTACGATAG 58.443 55.000 20.13 9.93 46.19 2.08
1949 3121 2.039879 ACCACTACAACCCCACAAGATC 59.960 50.000 0.00 0.00 0.00 2.75
1952 3124 2.305927 ACTACAACCCCACAAGATCCTG 59.694 50.000 0.00 0.00 0.00 3.86
1964 3136 3.133721 ACAAGATCCTGTGCTACATCCTC 59.866 47.826 0.00 0.00 0.00 3.71
1983 3155 3.443925 CTGAGCTCGAGTGGCCGA 61.444 66.667 15.13 0.00 37.03 5.54
2007 3194 1.964552 CACTCCCAGATCAAGATGGC 58.035 55.000 0.00 0.00 35.10 4.40
2008 3195 1.489649 CACTCCCAGATCAAGATGGCT 59.510 52.381 0.00 0.00 35.10 4.75
2017 3204 5.525378 CCAGATCAAGATGGCTTACTTACAC 59.475 44.000 0.00 0.00 31.81 2.90
2030 3217 5.935789 GCTTACTTACACATACACAAGGGAA 59.064 40.000 0.00 0.00 0.00 3.97
2032 3219 7.040961 GCTTACTTACACATACACAAGGGAAAA 60.041 37.037 0.00 0.00 0.00 2.29
2053 3240 6.824305 AAAGATTCGTGAAATCAAGGACAT 57.176 33.333 1.07 0.00 45.34 3.06
2059 3246 6.908870 TCGTGAAATCAAGGACATGATAAG 57.091 37.500 0.00 0.00 39.08 1.73
2062 3249 6.018425 CGTGAAATCAAGGACATGATAAGAGG 60.018 42.308 0.00 0.00 39.08 3.69
2067 3254 4.406972 TCAAGGACATGATAAGAGGAGTGG 59.593 45.833 0.00 0.00 0.00 4.00
2077 3282 0.247736 AGAGGAGTGGATGTCAACGC 59.752 55.000 0.00 0.00 0.00 4.84
2082 3287 2.351726 GGAGTGGATGTCAACGCAATAC 59.648 50.000 0.00 0.00 0.00 1.89
2083 3288 3.000041 GAGTGGATGTCAACGCAATACA 59.000 45.455 0.00 0.00 0.00 2.29
2097 3302 3.381272 CGCAATACACAATCTTGGGGATT 59.619 43.478 0.00 0.00 45.85 3.01
2098 3303 4.498009 CGCAATACACAATCTTGGGGATTC 60.498 45.833 0.00 0.00 41.18 2.52
2099 3304 4.498009 GCAATACACAATCTTGGGGATTCG 60.498 45.833 0.00 0.00 41.18 3.34
2100 3305 2.128771 ACACAATCTTGGGGATTCGG 57.871 50.000 0.00 0.00 42.20 4.30
2102 3307 2.017049 CACAATCTTGGGGATTCGGAC 58.983 52.381 0.00 0.00 42.20 4.79
2103 3308 1.064685 ACAATCTTGGGGATTCGGACC 60.065 52.381 0.00 0.00 42.20 4.46
2106 3311 0.546747 TCTTGGGGATTCGGACCAGT 60.547 55.000 0.00 0.00 35.37 4.00
2110 3315 0.326927 GGGGATTCGGACCAGTTGAA 59.673 55.000 0.00 0.00 0.00 2.69
2114 3319 3.509967 GGGATTCGGACCAGTTGAAAAAT 59.490 43.478 0.00 0.00 0.00 1.82
2118 3323 4.829064 TCGGACCAGTTGAAAAATGAAG 57.171 40.909 0.00 0.00 46.37 3.02
2120 3325 4.884744 TCGGACCAGTTGAAAAATGAAGAA 59.115 37.500 0.00 0.00 46.37 2.52
2121 3326 5.358442 TCGGACCAGTTGAAAAATGAAGAAA 59.642 36.000 0.00 0.00 46.37 2.52
2122 3327 6.040391 TCGGACCAGTTGAAAAATGAAGAAAT 59.960 34.615 0.00 0.00 46.37 2.17
2123 3328 6.363357 CGGACCAGTTGAAAAATGAAGAAATC 59.637 38.462 0.00 0.00 46.37 2.17
2124 3329 6.363357 GGACCAGTTGAAAAATGAAGAAATCG 59.637 38.462 0.00 0.00 46.37 3.34
2125 3330 6.215845 ACCAGTTGAAAAATGAAGAAATCGG 58.784 36.000 0.00 0.00 46.37 4.18
2214 3479 7.175990 ACAAAAAGATTAAATCCGGAGTAGCAA 59.824 33.333 11.34 2.98 0.00 3.91
2215 3480 7.881775 AAAAGATTAAATCCGGAGTAGCAAT 57.118 32.000 11.34 8.13 0.00 3.56
2223 3488 5.801531 ATCCGGAGTAGCAATATTGTACA 57.198 39.130 11.34 0.00 0.00 2.90
2271 3536 8.367156 CCAGGAAACTCAAATGGAAAATAGAAA 58.633 33.333 0.00 0.00 40.21 2.52
2278 3543 6.987386 TCAAATGGAAAATAGAAAAAGGCGA 58.013 32.000 0.00 0.00 0.00 5.54
2318 3619 5.512060 GCCTGAGCCTGAATATGAAGACATA 60.512 44.000 0.00 0.00 42.18 2.29
2333 3634 5.995282 TGAAGACATATTGAAGACGGTGTTT 59.005 36.000 0.00 0.00 0.00 2.83
2344 3654 1.259770 GACGGTGTTTCCAAAGTCGAC 59.740 52.381 7.70 7.70 35.57 4.20
2367 3677 3.907260 ATCACCACCACTGCTGCCG 62.907 63.158 0.00 0.00 0.00 5.69
2374 3684 2.475466 CCACTGCTGCCGCCAATAG 61.475 63.158 0.00 0.00 34.43 1.73
2380 3690 1.524621 CTGCCGCCAATAGTCCCAG 60.525 63.158 0.00 0.00 0.00 4.45
2432 3742 5.828328 AGAAACAGTTGAAGGGGTTAAAGAG 59.172 40.000 0.00 0.00 0.00 2.85
2438 3748 7.037586 ACAGTTGAAGGGGTTAAAGAGATGATA 60.038 37.037 0.00 0.00 0.00 2.15
2439 3749 7.829211 CAGTTGAAGGGGTTAAAGAGATGATAA 59.171 37.037 0.00 0.00 0.00 1.75
2449 3759 7.716998 GGTTAAAGAGATGATAAATGAGCTCCA 59.283 37.037 12.15 0.30 0.00 3.86
2451 3761 6.744175 AAGAGATGATAAATGAGCTCCAGA 57.256 37.500 12.15 0.00 0.00 3.86
2487 3827 3.582647 TGACAAGAACCCAGAAGCTGATA 59.417 43.478 0.00 0.00 32.44 2.15
2500 3840 7.029563 CCAGAAGCTGATATTAACAAAACCAC 58.970 38.462 0.00 0.00 32.44 4.16
2511 3854 9.793259 ATATTAACAAAACCACAGAGAAGAAGA 57.207 29.630 0.00 0.00 0.00 2.87
2580 3923 7.814107 TGATGGTGCAAAAGATTAAAGAATGTC 59.186 33.333 0.00 0.00 0.00 3.06
2606 3955 6.612863 TGAGAGATGATCAAAAGATCCTGGTA 59.387 38.462 0.00 0.00 0.00 3.25
2615 3964 6.789268 TCAAAAGATCCTGGTAATCCTCAAA 58.211 36.000 0.00 0.00 34.23 2.69
2616 3965 7.413446 TCAAAAGATCCTGGTAATCCTCAAAT 58.587 34.615 0.00 0.00 34.23 2.32
2617 3966 7.895429 TCAAAAGATCCTGGTAATCCTCAAATT 59.105 33.333 0.00 0.00 34.23 1.82
2725 4086 1.569493 CCACAAAGACCGCTCAACG 59.431 57.895 0.00 0.00 43.15 4.10
2734 4095 4.354155 CGCTCAACGGGACAAGAA 57.646 55.556 0.00 0.00 38.44 2.52
2735 4096 2.153913 CGCTCAACGGGACAAGAAG 58.846 57.895 0.00 0.00 38.44 2.85
2736 4097 1.869690 GCTCAACGGGACAAGAAGC 59.130 57.895 0.00 0.00 0.00 3.86
2743 4104 1.583477 GGGACAAGAAGCAGCAAGC 59.417 57.895 0.00 0.00 46.19 4.01
2785 4146 6.166279 TGGATCGTATGGAATATTCTCTTGC 58.834 40.000 14.95 6.62 0.00 4.01
2811 4172 3.701542 CCTCTACCTTGATACTGTGCTCA 59.298 47.826 0.00 0.00 0.00 4.26
2812 4173 4.202101 CCTCTACCTTGATACTGTGCTCAG 60.202 50.000 14.08 14.08 46.18 3.35
2813 4174 4.600062 TCTACCTTGATACTGTGCTCAGA 58.400 43.478 21.96 6.59 43.76 3.27
2816 4177 4.973168 ACCTTGATACTGTGCTCAGAAAA 58.027 39.130 21.96 7.59 43.76 2.29
2818 4179 6.006449 ACCTTGATACTGTGCTCAGAAAAAT 58.994 36.000 21.96 9.45 43.76 1.82
2847 4208 6.294473 CAGCATATGGATAGTGAAGAAACCT 58.706 40.000 4.56 0.00 0.00 3.50
2875 4236 0.094216 CTTCGCGACATCTTGTGCAG 59.906 55.000 9.15 0.00 0.00 4.41
2897 4258 2.802816 GTGCGAGTCACAAGAATTCTGT 59.197 45.455 9.17 6.72 44.98 3.41
2904 4265 6.454848 CGAGTCACAAGAATTCTGTATGAAGC 60.455 42.308 9.17 7.63 38.18 3.86
2986 4347 0.539986 AGAACCTTGTGTGACCGTGT 59.460 50.000 0.00 0.00 0.00 4.49
3053 4414 5.188988 TGGAGCTACCTAAAGAGTACAGA 57.811 43.478 0.00 0.00 39.86 3.41
3055 4416 6.195700 TGGAGCTACCTAAAGAGTACAGATT 58.804 40.000 0.00 0.00 39.86 2.40
3071 4432 7.280356 AGTACAGATTCTGTTTGTTGTACCTT 58.720 34.615 23.53 0.00 42.59 3.50
3098 4459 1.746615 CCCTCAAGGACGTGCCATG 60.747 63.158 2.38 3.56 40.02 3.66
3157 4518 3.010420 GGCTGATAACCACCAAAGACTC 58.990 50.000 0.00 0.00 0.00 3.36
3158 4519 3.559171 GGCTGATAACCACCAAAGACTCA 60.559 47.826 0.00 0.00 0.00 3.41
3162 4523 0.818040 AACCACCAAAGACTCACGCC 60.818 55.000 0.00 0.00 0.00 5.68
3206 4567 5.088739 GCCGAGAAATGTTTTGATACACTG 58.911 41.667 0.00 0.00 0.00 3.66
3212 4573 2.839975 TGTTTTGATACACTGGTCGCA 58.160 42.857 0.00 0.00 0.00 5.10
3233 4594 1.363807 GTGCCTTGTTTGTCCTGCC 59.636 57.895 0.00 0.00 0.00 4.85
3268 4629 0.034670 GGAAGGGTCAAGAGCTGCAT 60.035 55.000 1.02 0.00 0.00 3.96
3276 4637 0.738975 CAAGAGCTGCATGGTGGATG 59.261 55.000 1.02 0.00 34.84 3.51
3301 4662 7.715249 TGAGCTAGTTTATGGATTCATTACCAC 59.285 37.037 0.00 0.00 39.06 4.16
3303 4664 6.073222 GCTAGTTTATGGATTCATTACCACGG 60.073 42.308 0.00 0.00 39.06 4.94
3315 4687 2.233605 TACCACGGTCGCCATCAAGG 62.234 60.000 0.00 0.00 41.84 3.61
3333 4705 0.179062 GGAGCGCATTCTGGAGACAT 60.179 55.000 11.47 0.00 41.51 3.06
3373 4745 4.433615 GCTCGTCACTTCTCCATATTCAA 58.566 43.478 0.00 0.00 0.00 2.69
3404 4776 0.894835 TCCGCAGCTCAGACACAATA 59.105 50.000 0.00 0.00 0.00 1.90
3416 4788 6.597280 GCTCAGACACAATAGAGGATTTCTTT 59.403 38.462 0.00 0.00 37.36 2.52
3499 4874 4.569228 CCCAGAGTACCAGTACTACCTGAA 60.569 50.000 20.22 0.00 45.63 3.02
3519 4894 7.130303 CTGAATGACATATGCAGGAACATAG 57.870 40.000 1.58 0.00 36.03 2.23
3527 4902 7.679783 ACATATGCAGGAACATAGTAATGCTA 58.320 34.615 1.58 0.00 36.03 3.49
3537 4912 9.130312 GGAACATAGTAATGCTAAAGTATCTCG 57.870 37.037 0.00 0.00 36.50 4.04
3617 4993 3.246350 TGGAGGTATTGGATATCCGGGAT 60.246 47.826 17.04 15.04 39.43 3.85
3638 5014 1.771255 ACCAAGATCCCTATGTCTGCC 59.229 52.381 0.00 0.00 0.00 4.85
3648 5024 4.473196 TCCCTATGTCTGCCACAAGAAATA 59.527 41.667 0.00 0.00 38.97 1.40
3702 5508 1.000955 GTCGAAAGCTGAAGGGTCTGA 59.999 52.381 0.00 0.00 0.00 3.27
3704 5510 3.096852 TCGAAAGCTGAAGGGTCTGATA 58.903 45.455 0.00 0.00 0.00 2.15
3708 5514 3.320610 AGCTGAAGGGTCTGATAGCTA 57.679 47.619 0.00 0.00 39.50 3.32
3713 5519 3.954904 TGAAGGGTCTGATAGCTAGTCAC 59.045 47.826 0.00 0.00 0.00 3.67
3739 5545 5.125356 TGACTCAATTCAAAGCAGTTCTGA 58.875 37.500 3.84 0.00 0.00 3.27
3744 5550 5.532032 TCAATTCAAAGCAGTTCTGATGACA 59.468 36.000 3.84 0.00 0.00 3.58
3817 5647 0.033504 GGTCTGAAGCGTCTGTTGGA 59.966 55.000 0.31 0.00 0.00 3.53
3845 5684 4.025040 TGTTGATTCAAGTCCTGCTGAT 57.975 40.909 0.00 0.00 0.00 2.90
3939 5778 6.633500 CCAAGAATCAACAAGACTTGGTAA 57.367 37.500 19.16 0.00 46.90 2.85
3940 5779 6.672147 CCAAGAATCAACAAGACTTGGTAAG 58.328 40.000 19.16 2.26 46.90 2.34
3946 5785 3.923017 ACAAGACTTGGTAAGCATTGC 57.077 42.857 19.16 0.00 33.11 3.56
3949 5788 3.923017 AGACTTGGTAAGCATTGCAAC 57.077 42.857 11.91 8.40 29.70 4.17
4038 5877 3.244526 TGCAATCAGTGAGCTCCTAAACA 60.245 43.478 12.15 0.00 0.00 2.83
4049 5888 0.611714 TCCTAAACAAGTCCCTCCGC 59.388 55.000 0.00 0.00 0.00 5.54
4094 5933 6.270231 ACATAACCATATACAAGGACTCTCCC 59.730 42.308 0.00 0.00 37.19 4.30
4159 6043 6.036470 GCCTAACTATCAATGGAAGCAAAAC 58.964 40.000 0.00 0.00 0.00 2.43
4171 6055 2.281208 CAAAACGTGCCCCGAGGA 60.281 61.111 0.00 0.00 40.70 3.71
4172 6056 1.674322 CAAAACGTGCCCCGAGGAT 60.674 57.895 0.00 0.00 40.70 3.24
4173 6057 0.391927 CAAAACGTGCCCCGAGGATA 60.392 55.000 0.00 0.00 40.70 2.59
4174 6058 0.544697 AAAACGTGCCCCGAGGATAT 59.455 50.000 0.00 0.00 40.70 1.63
4175 6059 0.106149 AAACGTGCCCCGAGGATATC 59.894 55.000 0.00 0.00 40.70 1.63
4176 6060 1.046472 AACGTGCCCCGAGGATATCA 61.046 55.000 4.83 0.00 40.70 2.15
4197 6081 4.097741 TCAAAAGCACTAGCACACAAATGT 59.902 37.500 0.00 0.00 45.49 2.71
4213 6097 5.632347 CACAAATGTGGAAGCTTCTTGAATC 59.368 40.000 25.05 8.65 42.10 2.52
4245 6129 1.774110 TGGAAAGCAACTTGCCAAGA 58.226 45.000 12.25 0.00 45.41 3.02
4257 6141 6.402658 GCAACTTGCCAAGATAACTCTAAGTC 60.403 42.308 12.25 0.00 37.42 3.01
4313 6197 2.143925 GCCAAGCTTGAGAACTTACGT 58.856 47.619 28.05 0.00 0.00 3.57
4364 6248 3.748083 TGAGAGCAAGCTCACTTTCAAT 58.252 40.909 22.68 0.53 44.99 2.57
4370 6254 3.758554 GCAAGCTCACTTTCAATAAGGGA 59.241 43.478 0.00 0.00 32.29 4.20
4442 6326 7.407393 TGAAATCACATTTGATAATGGAGCA 57.593 32.000 0.00 0.00 42.00 4.26
4480 6364 3.403038 AGATCGTTTTGTCCTTCACCAG 58.597 45.455 0.00 0.00 0.00 4.00
4518 6402 3.130340 TGGAGTCAACTGCCTTCAAAAAC 59.870 43.478 0.00 0.00 32.95 2.43
4552 6436 3.887716 GAGCTGAAGGGCATCAATAACAT 59.112 43.478 0.00 0.00 34.17 2.71
4556 6440 4.209538 TGAAGGGCATCAATAACATGGAG 58.790 43.478 0.00 0.00 0.00 3.86
4560 6444 3.508793 GGGCATCAATAACATGGAGATGG 59.491 47.826 0.00 0.00 37.23 3.51
4572 6456 5.391256 ACATGGAGATGGTGCATTCATTAT 58.609 37.500 0.00 0.79 34.35 1.28
4617 6501 4.556233 CAAGGTGACTCTTCGTGATACAA 58.444 43.478 0.00 0.00 42.68 2.41
4638 6522 0.251354 GCTGGAGCAAGGTGATCTGA 59.749 55.000 0.00 0.00 41.59 3.27
4649 6533 4.313020 AGGTGATCTGAAAATCCTTGCT 57.687 40.909 0.00 0.00 0.00 3.91
4650 6534 5.441718 AGGTGATCTGAAAATCCTTGCTA 57.558 39.130 0.00 0.00 0.00 3.49
4655 6539 5.889853 TGATCTGAAAATCCTTGCTAGCAAT 59.110 36.000 29.40 14.45 35.20 3.56
4656 6540 7.012704 GTGATCTGAAAATCCTTGCTAGCAATA 59.987 37.037 29.40 20.59 35.20 1.90
4657 6541 7.557358 TGATCTGAAAATCCTTGCTAGCAATAA 59.443 33.333 29.40 20.22 35.20 1.40
4658 6542 7.325660 TCTGAAAATCCTTGCTAGCAATAAG 57.674 36.000 29.40 20.34 35.20 1.73
4669 6553 3.120718 GCTAGCAATAAGAAGATGCGCTC 60.121 47.826 10.63 3.60 44.60 5.03
4683 6567 2.055042 CGCTCCCTAGTGCTCCTGT 61.055 63.158 0.00 0.00 0.00 4.00
4706 6590 6.663093 TGTGGAAGTTTTATAATGGCAGTCAT 59.337 34.615 0.00 0.00 37.79 3.06
4716 6600 8.763049 TTATAATGGCAGTCATCTTATCTTCG 57.237 34.615 0.00 0.00 34.44 3.79
4751 6638 6.323739 TCCAAAAGCTCAACCTTCTTATTGTT 59.676 34.615 0.00 0.00 0.00 2.83
4753 6640 6.959639 AAAGCTCAACCTTCTTATTGTTGA 57.040 33.333 0.00 0.00 44.32 3.18
4758 6645 6.187727 TCAACCTTCTTATTGTTGACTCCT 57.812 37.500 0.00 0.00 42.36 3.69
4759 6646 6.231211 TCAACCTTCTTATTGTTGACTCCTC 58.769 40.000 0.00 0.00 42.36 3.71
4760 6647 6.043243 TCAACCTTCTTATTGTTGACTCCTCT 59.957 38.462 0.00 0.00 42.36 3.69
4761 6648 5.799213 ACCTTCTTATTGTTGACTCCTCTG 58.201 41.667 0.00 0.00 0.00 3.35
4762 6649 5.544176 ACCTTCTTATTGTTGACTCCTCTGA 59.456 40.000 0.00 0.00 0.00 3.27
4763 6650 6.105333 CCTTCTTATTGTTGACTCCTCTGAG 58.895 44.000 0.00 0.00 44.62 3.35
4776 6663 4.019858 CTCCTCTGAGTCTGACATAACCA 58.980 47.826 10.88 0.00 33.70 3.67
4779 6666 4.464244 CCTCTGAGTCTGACATAACCAAGA 59.536 45.833 10.88 1.67 0.00 3.02
4787 6674 7.398024 AGTCTGACATAACCAAGATAAGCTTT 58.602 34.615 3.20 0.00 33.60 3.51
4791 6678 7.398829 TGACATAACCAAGATAAGCTTTACCA 58.601 34.615 3.20 0.00 33.60 3.25
4794 6681 7.668052 ACATAACCAAGATAAGCTTTACCAACA 59.332 33.333 3.20 0.00 33.60 3.33
4833 6720 3.533606 AGATCGTCTGGTCATTCAAGG 57.466 47.619 0.00 0.00 0.00 3.61
4834 6721 2.169352 AGATCGTCTGGTCATTCAAGGG 59.831 50.000 0.00 0.00 0.00 3.95
4862 6749 1.472878 TCTCTGTCCGGAATCGACAAG 59.527 52.381 5.23 1.23 39.00 3.16
4892 6779 4.218417 GCATTAAAGGAGCTGGAGTTGAAA 59.782 41.667 0.00 0.00 0.00 2.69
4893 6780 5.620879 GCATTAAAGGAGCTGGAGTTGAAAG 60.621 44.000 0.00 0.00 0.00 2.62
4894 6781 2.575805 AAGGAGCTGGAGTTGAAAGG 57.424 50.000 0.00 0.00 0.00 3.11
4914 6801 2.835764 GGTGGTGACAGTGTCCCTAATA 59.164 50.000 20.43 0.00 44.46 0.98
4917 6804 4.020485 GTGGTGACAGTGTCCCTAATAAGT 60.020 45.833 20.43 0.00 44.46 2.24
4931 6818 9.232473 GTCCCTAATAAGTTGAAAGAAGACATT 57.768 33.333 0.00 0.00 0.00 2.71
4963 6850 8.957466 ACAAAAGATTAGGCTTGACTATAAACC 58.043 33.333 0.00 0.00 0.00 3.27
4966 6853 6.831976 AGATTAGGCTTGACTATAAACCCAG 58.168 40.000 0.00 0.00 0.00 4.45
4972 6862 5.513267 GGCTTGACTATAAACCCAGGGATAG 60.513 48.000 14.54 11.74 0.00 2.08
4977 6867 2.222461 TAAACCCAGGGATAGGCCAT 57.778 50.000 14.54 0.00 38.95 4.40
4983 6873 3.470921 ACCCAGGGATAGGCCATAAAAAT 59.529 43.478 14.54 0.00 38.95 1.82
5031 6933 0.685131 TGCAAGATGCCCATCCTTGG 60.685 55.000 15.55 0.00 44.23 3.61
5043 6945 0.914417 ATCCTTGGGGAAGGCGAAGA 60.914 55.000 0.00 0.00 45.78 2.87
5045 6947 0.960861 CCTTGGGGAAGGCGAAGAAC 60.961 60.000 0.00 0.00 32.43 3.01
5049 6951 2.041115 GGGAAGGCGAAGAACTGGC 61.041 63.158 0.00 0.00 0.00 4.85
5067 6969 1.078848 CGCTGGAGGAACTGAAGGG 60.079 63.158 0.00 0.00 41.55 3.95
5082 6984 4.196965 GGGCTTCCCGTTACTTCG 57.803 61.111 0.00 0.00 32.13 3.79
5093 6995 2.534349 CCGTTACTTCGTCCATTCATCG 59.466 50.000 0.00 0.00 0.00 3.84
5105 7007 2.684374 CCATTCATCGTCAATTCCTGCA 59.316 45.455 0.00 0.00 0.00 4.41
5134 7036 0.724549 GTTTGTGTGTGCTCGTGTGA 59.275 50.000 0.00 0.00 0.00 3.58
5179 7082 2.032054 ACTGAGTGTGCATTTGTGTTCG 59.968 45.455 0.00 0.00 0.00 3.95
5259 7196 1.001378 GTGTGGCTTGTGATTGTGGTC 60.001 52.381 0.00 0.00 0.00 4.02
5411 17697 5.066375 GTGTTATATCATGTGCTTTGGCTGA 59.934 40.000 0.00 0.00 39.59 4.26
5440 17730 5.106197 TGCAATGATGAACTGGTTGTATGTC 60.106 40.000 0.00 0.00 0.00 3.06
5538 17847 5.521735 CAGAGGTTTCTCAGATATTTGTCCG 59.478 44.000 0.00 0.00 42.34 4.79
5557 17866 2.645802 CGTCTTCTCCCTAGCTAGTGT 58.354 52.381 19.31 0.00 0.00 3.55
5839 18753 2.158900 ACTGAGAACACCACCAAGTGAG 60.159 50.000 0.00 0.00 40.34 3.51
5879 18793 4.295905 ACCCTGTTATCTTCCCCTATCA 57.704 45.455 0.00 0.00 0.00 2.15
5880 18794 4.235372 ACCCTGTTATCTTCCCCTATCAG 58.765 47.826 0.00 0.00 0.00 2.90
5881 18795 3.584848 CCCTGTTATCTTCCCCTATCAGG 59.415 52.174 0.00 0.00 40.30 3.86
5882 18796 4.493618 CCTGTTATCTTCCCCTATCAGGA 58.506 47.826 0.00 0.00 42.33 3.86
5883 18797 5.097234 CCTGTTATCTTCCCCTATCAGGAT 58.903 45.833 0.00 0.00 42.33 3.24
5899 18813 0.652592 GGATTCAGGACAATGCGACG 59.347 55.000 0.00 0.00 0.00 5.12
5979 18896 1.073722 CCTGCTCTTGTTGCTCCCA 59.926 57.895 0.00 0.00 0.00 4.37
5992 18909 3.672295 CTCCCACTTCCTCTGCGCC 62.672 68.421 4.18 0.00 0.00 6.53
6081 19009 2.121291 TATTCCTTGGCGCAATCACA 57.879 45.000 10.83 0.00 0.00 3.58
6084 19012 0.537143 TCCTTGGCGCAATCACACTT 60.537 50.000 10.83 0.00 0.00 3.16
6087 19015 2.076100 CTTGGCGCAATCACACTTCTA 58.924 47.619 10.83 0.00 0.00 2.10
6110 19038 1.078918 TCAAGACTGCCATCAGCCG 60.079 57.895 0.00 0.00 44.10 5.52
6162 19090 3.030291 ACCTGCTGATCTTCACTAGGAG 58.970 50.000 0.00 0.00 0.00 3.69
6178 19106 4.767928 ACTAGGAGGTAGAAACACACTCAG 59.232 45.833 0.00 0.00 32.41 3.35
6179 19107 3.577919 AGGAGGTAGAAACACACTCAGT 58.422 45.455 0.00 0.00 0.00 3.41
6180 19108 4.737578 AGGAGGTAGAAACACACTCAGTA 58.262 43.478 0.00 0.00 0.00 2.74
6181 19109 4.523558 AGGAGGTAGAAACACACTCAGTAC 59.476 45.833 0.00 0.00 0.00 2.73
6182 19110 4.321824 GGAGGTAGAAACACACTCAGTACC 60.322 50.000 0.00 0.00 0.00 3.34
6198 19126 4.021981 TCAGTACCATGCTAGATGATTCCG 60.022 45.833 0.00 0.00 0.00 4.30
6212 19140 4.220693 TGATTCCGGAACATGATTCAGT 57.779 40.909 21.56 0.00 0.00 3.41
6218 19146 1.133790 GGAACATGATTCAGTGCCTGC 59.866 52.381 0.00 0.00 30.24 4.85
6239 19167 2.408271 TGCAGCACCTTCTTCCTATG 57.592 50.000 0.00 0.00 0.00 2.23
6250 19178 3.695830 TCTTCCTATGGTGGTGTTCAC 57.304 47.619 0.00 0.00 45.34 3.18
6275 19203 9.975218 ACTTTTCCTGTGGTTTATATATGAACT 57.025 29.630 17.12 0.00 0.00 3.01
6324 19252 2.360350 CCTGACCTGGTGCGCATT 60.360 61.111 15.91 0.00 0.00 3.56
6325 19253 2.693762 CCTGACCTGGTGCGCATTG 61.694 63.158 15.91 6.83 0.00 2.82
6326 19254 1.968017 CTGACCTGGTGCGCATTGT 60.968 57.895 15.91 8.70 0.00 2.71
6327 19255 1.915614 CTGACCTGGTGCGCATTGTC 61.916 60.000 15.91 17.72 0.00 3.18
6328 19256 1.672356 GACCTGGTGCGCATTGTCT 60.672 57.895 15.91 0.00 0.00 3.41
6330 19258 2.743752 CCTGGTGCGCATTGTCTCG 61.744 63.158 15.91 0.00 0.00 4.04
6331 19259 2.029288 CTGGTGCGCATTGTCTCGT 61.029 57.895 15.91 0.00 0.00 4.18
6332 19260 1.959899 CTGGTGCGCATTGTCTCGTC 61.960 60.000 15.91 0.00 0.00 4.20
6334 19262 2.049526 TGCGCATTGTCTCGTCGT 60.050 55.556 5.66 0.00 0.00 4.34
6336 19264 2.979808 CGCATTGTCTCGTCGTCG 59.020 61.111 0.00 0.00 38.55 5.12
6337 19265 2.497092 CGCATTGTCTCGTCGTCGG 61.497 63.158 1.55 0.00 37.69 4.79
6339 19267 2.158959 CATTGTCTCGTCGTCGGCC 61.159 63.158 1.55 0.00 37.69 6.13
6340 19268 2.341101 ATTGTCTCGTCGTCGGCCT 61.341 57.895 0.00 0.00 37.69 5.19
6341 19269 1.028330 ATTGTCTCGTCGTCGGCCTA 61.028 55.000 0.00 0.00 37.69 3.93
6342 19270 1.915614 TTGTCTCGTCGTCGGCCTAC 61.916 60.000 0.00 0.00 37.69 3.18
6343 19271 2.105466 GTCTCGTCGTCGGCCTACT 61.105 63.158 5.79 0.00 37.69 2.57
6344 19272 1.812922 TCTCGTCGTCGGCCTACTC 60.813 63.158 5.79 0.00 37.69 2.59
6345 19273 2.821366 TCGTCGTCGGCCTACTCC 60.821 66.667 5.79 0.00 37.69 3.85
6346 19274 3.129502 CGTCGTCGGCCTACTCCA 61.130 66.667 5.79 0.00 0.00 3.86
6347 19275 2.488820 GTCGTCGGCCTACTCCAC 59.511 66.667 5.79 0.00 0.00 4.02
6348 19276 2.753043 TCGTCGGCCTACTCCACC 60.753 66.667 5.79 0.00 0.00 4.61
6349 19277 2.754658 CGTCGGCCTACTCCACCT 60.755 66.667 5.79 0.00 0.00 4.00
6350 19278 2.893398 GTCGGCCTACTCCACCTG 59.107 66.667 0.00 0.00 0.00 4.00
6351 19279 2.363795 TCGGCCTACTCCACCTGG 60.364 66.667 0.00 0.00 0.00 4.45
6352 19280 4.162690 CGGCCTACTCCACCTGGC 62.163 72.222 0.00 0.00 44.22 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.005684 GCCATTAATTGATTCATCGCCCA 59.994 43.478 0.00 0.00 0.00 5.36
16 17 3.888934 ACGCCATTAATTGATTCATCGC 58.111 40.909 0.00 0.00 0.00 4.58
23 24 5.630121 TGGAAGGATACGCCATTAATTGAT 58.370 37.500 0.00 0.00 40.32 2.57
34 35 1.480954 TGGTCTTCTGGAAGGATACGC 59.519 52.381 10.01 0.00 46.39 4.42
102 103 7.566760 TGTGCTGATGAAGTTAGAAAAGAAA 57.433 32.000 0.00 0.00 0.00 2.52
141 150 1.980765 TGAGATGGCCTTGTTCTCACT 59.019 47.619 18.27 0.07 40.59 3.41
142 151 2.354259 CTGAGATGGCCTTGTTCTCAC 58.646 52.381 18.27 2.46 40.59 3.51
143 152 1.280133 CCTGAGATGGCCTTGTTCTCA 59.720 52.381 19.90 19.90 42.60 3.27
144 153 1.556911 TCCTGAGATGGCCTTGTTCTC 59.443 52.381 3.32 11.05 37.10 2.87
145 154 1.661463 TCCTGAGATGGCCTTGTTCT 58.339 50.000 3.32 0.53 0.00 3.01
146 155 2.087646 GTTCCTGAGATGGCCTTGTTC 58.912 52.381 3.32 0.00 0.00 3.18
147 156 1.425066 TGTTCCTGAGATGGCCTTGTT 59.575 47.619 3.32 0.00 0.00 2.83
148 157 1.067295 TGTTCCTGAGATGGCCTTGT 58.933 50.000 3.32 0.00 0.00 3.16
149 158 2.092538 AGATGTTCCTGAGATGGCCTTG 60.093 50.000 3.32 0.00 0.00 3.61
150 159 2.203584 AGATGTTCCTGAGATGGCCTT 58.796 47.619 3.32 0.00 0.00 4.35
151 160 1.890552 AGATGTTCCTGAGATGGCCT 58.109 50.000 3.32 0.00 0.00 5.19
152 161 2.172293 AGAAGATGTTCCTGAGATGGCC 59.828 50.000 0.00 0.00 32.48 5.36
153 162 3.204526 CAGAAGATGTTCCTGAGATGGC 58.795 50.000 0.00 0.00 32.48 4.40
154 163 3.204526 GCAGAAGATGTTCCTGAGATGG 58.795 50.000 0.00 0.00 32.48 3.51
163 172 3.935828 GGTACCTCTTGCAGAAGATGTTC 59.064 47.826 4.06 0.00 37.92 3.18
179 189 3.605879 AGGTAAAGGGTCTTTGGTACCT 58.394 45.455 14.36 7.25 37.18 3.08
181 191 4.976864 TCAAGGTAAAGGGTCTTTGGTAC 58.023 43.478 3.44 0.00 0.00 3.34
264 277 2.427506 GAAGAGAAGCAAACGGGTGAT 58.572 47.619 0.00 0.00 0.00 3.06
287 300 6.655078 ATGCAGGCGAGGATATTTTTATTT 57.345 33.333 0.00 0.00 0.00 1.40
298 340 2.887783 TGTTTTAAAATGCAGGCGAGGA 59.112 40.909 3.52 0.00 0.00 3.71
302 344 5.149054 TGTTTTGTTTTAAAATGCAGGCG 57.851 34.783 3.52 0.00 0.00 5.52
344 386 1.661341 GCAGGATGGAGTGCTTAGTG 58.339 55.000 0.00 0.00 36.71 2.74
377 419 2.631428 GCAACGCGCAGTCTTTCA 59.369 55.556 5.73 0.00 41.79 2.69
421 463 4.202233 GGACTTCTATTTAGGAACGGAGGG 60.202 50.000 0.00 0.00 0.00 4.30
423 465 5.855740 AGGACTTCTATTTAGGAACGGAG 57.144 43.478 0.00 0.00 0.00 4.63
424 466 6.616237 AAAGGACTTCTATTTAGGAACGGA 57.384 37.500 0.00 0.00 0.00 4.69
425 467 8.255905 TCTAAAAGGACTTCTATTTAGGAACGG 58.744 37.037 0.00 0.00 36.48 4.44
426 468 9.303537 CTCTAAAAGGACTTCTATTTAGGAACG 57.696 37.037 0.00 0.00 36.48 3.95
433 475 9.171877 CTGCAATCTCTAAAAGGACTTCTATTT 57.828 33.333 0.00 0.00 0.00 1.40
434 476 8.325046 ACTGCAATCTCTAAAAGGACTTCTATT 58.675 33.333 0.00 0.00 0.00 1.73
436 478 7.246171 ACTGCAATCTCTAAAAGGACTTCTA 57.754 36.000 0.00 0.00 0.00 2.10
437 479 6.120507 ACTGCAATCTCTAAAAGGACTTCT 57.879 37.500 0.00 0.00 0.00 2.85
438 480 6.874134 TGTACTGCAATCTCTAAAAGGACTTC 59.126 38.462 0.00 0.00 0.00 3.01
439 481 6.769512 TGTACTGCAATCTCTAAAAGGACTT 58.230 36.000 0.00 0.00 0.00 3.01
440 482 6.360370 TGTACTGCAATCTCTAAAAGGACT 57.640 37.500 0.00 0.00 0.00 3.85
441 483 7.173390 AGTTTGTACTGCAATCTCTAAAAGGAC 59.827 37.037 0.00 0.00 36.89 3.85
442 484 7.224297 AGTTTGTACTGCAATCTCTAAAAGGA 58.776 34.615 0.00 0.00 36.89 3.36
443 485 7.440523 AGTTTGTACTGCAATCTCTAAAAGG 57.559 36.000 0.00 0.00 36.89 3.11
449 491 8.082852 CCGTATATAGTTTGTACTGCAATCTCT 58.917 37.037 0.00 0.00 37.97 3.10
450 492 7.328737 CCCGTATATAGTTTGTACTGCAATCTC 59.671 40.741 0.00 0.00 37.97 2.75
451 493 7.152645 CCCGTATATAGTTTGTACTGCAATCT 58.847 38.462 0.00 0.00 39.60 2.40
452 494 6.927381 ACCCGTATATAGTTTGTACTGCAATC 59.073 38.462 0.00 0.00 36.89 2.67
453 495 6.704493 CACCCGTATATAGTTTGTACTGCAAT 59.296 38.462 0.00 0.00 36.89 3.56
454 496 6.044046 CACCCGTATATAGTTTGTACTGCAA 58.956 40.000 0.00 0.00 35.78 4.08
455 497 5.127519 ACACCCGTATATAGTTTGTACTGCA 59.872 40.000 0.00 0.00 35.78 4.41
456 498 5.594926 ACACCCGTATATAGTTTGTACTGC 58.405 41.667 0.00 0.00 35.78 4.40
457 499 8.355169 ACATACACCCGTATATAGTTTGTACTG 58.645 37.037 0.00 0.00 36.11 2.74
458 500 8.469309 ACATACACCCGTATATAGTTTGTACT 57.531 34.615 0.00 0.00 36.11 2.73
459 501 9.831737 CTACATACACCCGTATATAGTTTGTAC 57.168 37.037 0.00 0.00 36.11 2.90
460 502 9.791801 TCTACATACACCCGTATATAGTTTGTA 57.208 33.333 0.00 0.00 36.74 2.41
461 503 8.571336 GTCTACATACACCCGTATATAGTTTGT 58.429 37.037 0.00 0.00 36.74 2.83
462 504 7.747799 CGTCTACATACACCCGTATATAGTTTG 59.252 40.741 0.00 0.00 36.74 2.93
463 505 7.445402 ACGTCTACATACACCCGTATATAGTTT 59.555 37.037 0.00 0.00 36.74 2.66
464 506 6.936900 ACGTCTACATACACCCGTATATAGTT 59.063 38.462 0.00 0.00 36.74 2.24
465 507 6.467677 ACGTCTACATACACCCGTATATAGT 58.532 40.000 0.00 0.00 36.74 2.12
466 508 6.974932 ACGTCTACATACACCCGTATATAG 57.025 41.667 0.00 0.00 36.72 1.31
467 509 9.448438 AAATACGTCTACATACACCCGTATATA 57.552 33.333 0.00 0.00 39.69 0.86
468 510 7.928307 AATACGTCTACATACACCCGTATAT 57.072 36.000 0.00 0.00 39.69 0.86
469 511 7.744087 AAATACGTCTACATACACCCGTATA 57.256 36.000 0.00 0.00 39.69 1.47
470 512 6.639632 AAATACGTCTACATACACCCGTAT 57.360 37.500 0.00 0.00 41.62 3.06
471 513 6.449635 AAAATACGTCTACATACACCCGTA 57.550 37.500 0.00 0.00 35.57 4.02
472 514 4.989279 AAATACGTCTACATACACCCGT 57.011 40.909 0.00 0.00 0.00 5.28
473 515 6.728200 TCTAAAATACGTCTACATACACCCG 58.272 40.000 0.00 0.00 0.00 5.28
474 516 8.139989 ACATCTAAAATACGTCTACATACACCC 58.860 37.037 0.00 0.00 0.00 4.61
495 537 8.897752 GGAGCAAAATTGAGTAAATCTACATCT 58.102 33.333 0.00 0.00 0.00 2.90
496 538 7.852945 CGGAGCAAAATTGAGTAAATCTACATC 59.147 37.037 0.00 0.00 0.00 3.06
497 539 7.336931 ACGGAGCAAAATTGAGTAAATCTACAT 59.663 33.333 0.00 0.00 0.00 2.29
498 540 6.653320 ACGGAGCAAAATTGAGTAAATCTACA 59.347 34.615 0.00 0.00 0.00 2.74
499 541 7.073342 ACGGAGCAAAATTGAGTAAATCTAC 57.927 36.000 0.00 0.00 0.00 2.59
500 542 8.826710 CATACGGAGCAAAATTGAGTAAATCTA 58.173 33.333 0.00 0.00 0.00 1.98
501 543 7.336931 ACATACGGAGCAAAATTGAGTAAATCT 59.663 33.333 0.00 0.00 0.00 2.40
502 544 7.472543 ACATACGGAGCAAAATTGAGTAAATC 58.527 34.615 0.00 0.00 0.00 2.17
503 545 7.391148 ACATACGGAGCAAAATTGAGTAAAT 57.609 32.000 0.00 0.00 0.00 1.40
504 546 6.811253 ACATACGGAGCAAAATTGAGTAAA 57.189 33.333 0.00 0.00 0.00 2.01
505 547 7.101054 ACTACATACGGAGCAAAATTGAGTAA 58.899 34.615 0.00 0.00 0.00 2.24
506 548 6.636705 ACTACATACGGAGCAAAATTGAGTA 58.363 36.000 0.00 0.00 0.00 2.59
507 549 5.488341 ACTACATACGGAGCAAAATTGAGT 58.512 37.500 0.00 0.00 0.00 3.41
508 550 5.006746 GGACTACATACGGAGCAAAATTGAG 59.993 44.000 0.00 0.00 0.00 3.02
509 551 4.873827 GGACTACATACGGAGCAAAATTGA 59.126 41.667 0.00 0.00 0.00 2.57
510 552 4.634004 TGGACTACATACGGAGCAAAATTG 59.366 41.667 0.00 0.00 0.00 2.32
511 553 4.839121 TGGACTACATACGGAGCAAAATT 58.161 39.130 0.00 0.00 0.00 1.82
512 554 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
513 555 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
514 556 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
515 557 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
516 558 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
517 559 3.057456 CCACTATGGACTACATACGGAGC 60.057 52.174 0.00 0.00 40.96 4.70
518 560 4.395625 TCCACTATGGACTACATACGGAG 58.604 47.826 0.00 0.00 42.67 4.63
519 561 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
530 572 6.897966 AGTCTTTGTAGAGATTCCACTATGGA 59.102 38.462 0.00 0.00 46.61 3.41
531 573 7.118496 AGTCTTTGTAGAGATTCCACTATGG 57.882 40.000 0.00 0.00 39.43 2.74
547 589 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
548 590 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
549 591 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
550 592 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
551 593 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
552 594 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
553 595 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
554 596 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
555 597 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
556 598 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
557 599 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
558 600 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
559 601 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
560 602 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
561 603 3.525199 AGTAGTACTCCCTCCGTTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
562 604 3.118531 AGTAGTACTCCCTCCGTTCCTA 58.881 50.000 0.00 0.00 0.00 2.94
563 605 1.921748 AGTAGTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
564 606 2.433662 AGTAGTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
565 607 5.065859 GTCTAAAGTAGTACTCCCTCCGTTC 59.934 48.000 2.58 0.00 0.00 3.95
566 608 4.946772 GTCTAAAGTAGTACTCCCTCCGTT 59.053 45.833 2.58 0.00 0.00 4.44
567 609 4.227073 AGTCTAAAGTAGTACTCCCTCCGT 59.773 45.833 2.58 0.00 0.00 4.69
568 610 4.779696 AGTCTAAAGTAGTACTCCCTCCG 58.220 47.826 2.58 0.00 0.00 4.63
569 611 7.516452 TGATAGTCTAAAGTAGTACTCCCTCC 58.484 42.308 2.58 0.00 0.00 4.30
570 612 8.977267 TTGATAGTCTAAAGTAGTACTCCCTC 57.023 38.462 2.58 0.00 0.00 4.30
571 613 9.411189 CTTTGATAGTCTAAAGTAGTACTCCCT 57.589 37.037 2.58 0.00 0.00 4.20
572 614 9.406113 TCTTTGATAGTCTAAAGTAGTACTCCC 57.594 37.037 2.58 0.00 35.82 4.30
587 629 9.861138 CGATTTCTCATTTCATCTTTGATAGTC 57.139 33.333 0.00 0.00 0.00 2.59
588 630 9.388506 ACGATTTCTCATTTCATCTTTGATAGT 57.611 29.630 0.00 0.00 0.00 2.12
589 631 9.647679 CACGATTTCTCATTTCATCTTTGATAG 57.352 33.333 0.00 0.00 0.00 2.08
590 632 9.382275 TCACGATTTCTCATTTCATCTTTGATA 57.618 29.630 0.00 0.00 0.00 2.15
701 747 2.735444 CGCGATTTGCCTACTCTTCAGA 60.735 50.000 0.00 0.00 42.08 3.27
1070 1158 2.124983 CCGATCACACCCAGCAGG 60.125 66.667 0.00 0.00 43.78 4.85
1172 1260 1.322442 GGCTGTTTGCAGAGAGGTTT 58.678 50.000 3.46 0.00 45.28 3.27
1183 1271 4.724697 CGTGCTCGCGGCTGTTTG 62.725 66.667 18.14 3.07 42.39 2.93
1184 1272 4.961511 TCGTGCTCGCGGCTGTTT 62.962 61.111 18.14 0.00 42.39 2.83
1321 1409 3.636231 TCCACCAGAGGCAACGGG 61.636 66.667 0.00 0.00 46.39 5.28
1325 1413 0.768221 AGGAAGTCCACCAGAGGCAA 60.768 55.000 0.00 0.00 38.89 4.52
1327 1415 1.298014 CAGGAAGTCCACCAGAGGC 59.702 63.158 0.00 0.00 38.89 4.70
1338 1426 4.335647 CCGTGGCAGCCAGGAAGT 62.336 66.667 31.78 0.00 41.36 3.01
1341 1429 4.020617 CTTCCGTGGCAGCCAGGA 62.021 66.667 31.78 26.54 41.36 3.86
1409 1497 0.179156 GGTTGCTGATGTCCAATGCG 60.179 55.000 0.00 0.00 0.00 4.73
1414 1502 2.359850 GGCGGTTGCTGATGTCCA 60.360 61.111 0.00 0.00 42.25 4.02
1422 1510 4.394712 CCTCCTTCGGCGGTTGCT 62.395 66.667 7.21 0.00 42.25 3.91
1435 1523 2.073037 GACCTCGACGCCATACCTCC 62.073 65.000 0.00 0.00 0.00 4.30
1488 1588 2.089980 CAAGAACAATGGCTCCCAGAG 58.910 52.381 0.00 0.00 36.75 3.35
1489 1589 1.425066 ACAAGAACAATGGCTCCCAGA 59.575 47.619 0.00 0.00 36.75 3.86
1490 1590 1.815003 GACAAGAACAATGGCTCCCAG 59.185 52.381 0.00 0.00 36.75 4.45
1491 1591 1.881925 CGACAAGAACAATGGCTCCCA 60.882 52.381 0.00 0.00 38.19 4.37
1492 1592 0.804989 CGACAAGAACAATGGCTCCC 59.195 55.000 0.00 0.00 0.00 4.30
1592 1698 1.211212 TCCTTGTCCATCCTCATGCTG 59.789 52.381 0.00 0.00 0.00 4.41
1615 1727 4.985538 TCTAGCCTTTCTCGAAAGTAGG 57.014 45.455 15.86 5.37 44.66 3.18
1626 1738 3.495806 CCCATCCAGTCATCTAGCCTTTC 60.496 52.174 0.00 0.00 0.00 2.62
1627 1739 2.441001 CCCATCCAGTCATCTAGCCTTT 59.559 50.000 0.00 0.00 0.00 3.11
1628 1740 2.053244 CCCATCCAGTCATCTAGCCTT 58.947 52.381 0.00 0.00 0.00 4.35
1646 1758 1.153628 CGAACTCACCACCGATCCC 60.154 63.158 0.00 0.00 0.00 3.85
1659 1771 0.114560 TCTCCCTTCACCTCCGAACT 59.885 55.000 0.00 0.00 0.00 3.01
1660 1772 0.246910 GTCTCCCTTCACCTCCGAAC 59.753 60.000 0.00 0.00 0.00 3.95
1661 1773 0.178944 TGTCTCCCTTCACCTCCGAA 60.179 55.000 0.00 0.00 0.00 4.30
1662 1774 0.041238 ATGTCTCCCTTCACCTCCGA 59.959 55.000 0.00 0.00 0.00 4.55
1675 1802 1.001268 TCGCATTCGGCTCTATGTCTC 60.001 52.381 0.00 0.00 41.67 3.36
1683 1810 1.218230 GATCCTGTCGCATTCGGCTC 61.218 60.000 0.00 0.00 41.64 4.70
1695 1822 1.608590 CGCCAGTTTTGTTGATCCTGT 59.391 47.619 0.00 0.00 0.00 4.00
1697 1824 1.247567 CCGCCAGTTTTGTTGATCCT 58.752 50.000 0.00 0.00 0.00 3.24
1705 1832 1.154035 GATTCGGCCGCCAGTTTTG 60.154 57.895 23.51 0.00 0.00 2.44
1706 1833 1.175983 TTGATTCGGCCGCCAGTTTT 61.176 50.000 23.51 0.00 0.00 2.43
1753 1880 1.304713 TCCTCGGCCTTCGTTACCT 60.305 57.895 0.00 0.00 40.32 3.08
1780 1919 1.464997 CCAGGACTTTAAGCGCAAGAC 59.535 52.381 11.47 4.96 43.02 3.01
1786 1925 0.676782 CACCCCCAGGACTTTAAGCG 60.677 60.000 0.00 0.00 36.73 4.68
1789 1928 2.157973 TCTACCACCCCCAGGACTTTAA 60.158 50.000 0.00 0.00 36.73 1.52
1801 1940 6.295719 TCTTGAAATAGTCTTCTACCACCC 57.704 41.667 0.00 0.00 0.00 4.61
1807 1946 6.620877 TTGCCCTCTTGAAATAGTCTTCTA 57.379 37.500 0.00 0.00 0.00 2.10
1813 1952 4.455877 CGTCTTTTGCCCTCTTGAAATAGT 59.544 41.667 0.00 0.00 0.00 2.12
1832 1971 3.381908 CAGCTACCTTATCTTGGACGTCT 59.618 47.826 16.46 0.00 0.00 4.18
1850 1989 1.342074 TGTTCTCTGGTAGCACAGCT 58.658 50.000 0.00 0.00 43.41 4.24
1853 2525 2.037251 GTCCTTGTTCTCTGGTAGCACA 59.963 50.000 0.00 0.00 28.76 4.57
1858 2530 1.272490 CAGCGTCCTTGTTCTCTGGTA 59.728 52.381 0.00 0.00 0.00 3.25
1867 2539 0.321653 GATGTTCCCAGCGTCCTTGT 60.322 55.000 0.00 0.00 0.00 3.16
1901 3073 1.070105 GTAGTGCACCGTTGGGACA 59.930 57.895 14.63 0.00 36.97 4.02
1936 3108 0.251341 GCACAGGATCTTGTGGGGTT 60.251 55.000 31.77 0.00 46.62 4.11
1949 3121 0.529337 CAGCGAGGATGTAGCACAGG 60.529 60.000 0.00 0.00 0.00 4.00
1952 3124 0.873743 GCTCAGCGAGGATGTAGCAC 60.874 60.000 7.50 0.00 0.00 4.40
1981 3153 0.250234 TGATCTGGGAGTGCCTTTCG 59.750 55.000 1.06 0.00 0.00 3.46
1983 3155 1.988107 TCTTGATCTGGGAGTGCCTTT 59.012 47.619 1.06 0.00 0.00 3.11
1991 3163 3.387962 AGTAAGCCATCTTGATCTGGGA 58.612 45.455 1.28 0.00 33.85 4.37
1992 3164 3.853355 AGTAAGCCATCTTGATCTGGG 57.147 47.619 1.28 0.00 33.85 4.45
1998 3185 6.816640 GTGTATGTGTAAGTAAGCCATCTTGA 59.183 38.462 0.00 0.00 33.85 3.02
2007 3194 7.972832 TTTCCCTTGTGTATGTGTAAGTAAG 57.027 36.000 0.00 0.00 0.00 2.34
2008 3195 8.212312 TCTTTTCCCTTGTGTATGTGTAAGTAA 58.788 33.333 0.00 0.00 0.00 2.24
2017 3204 5.411361 TCACGAATCTTTTCCCTTGTGTATG 59.589 40.000 0.00 0.00 0.00 2.39
2030 3217 6.430925 TCATGTCCTTGATTTCACGAATCTTT 59.569 34.615 0.00 0.00 43.74 2.52
2032 3219 5.491070 TCATGTCCTTGATTTCACGAATCT 58.509 37.500 0.00 0.00 43.74 2.40
2053 3240 4.142160 CGTTGACATCCACTCCTCTTATCA 60.142 45.833 0.00 0.00 0.00 2.15
2059 3246 0.037326 TGCGTTGACATCCACTCCTC 60.037 55.000 0.00 0.00 0.00 3.71
2062 3249 3.000041 TGTATTGCGTTGACATCCACTC 59.000 45.455 0.00 0.00 0.00 3.51
2067 3254 5.221891 AGATTGTGTATTGCGTTGACATC 57.778 39.130 0.00 0.00 0.00 3.06
2077 3282 4.036734 CCGAATCCCCAAGATTGTGTATTG 59.963 45.833 0.00 0.00 45.52 1.90
2082 3287 2.017049 GTCCGAATCCCCAAGATTGTG 58.983 52.381 0.00 0.00 45.52 3.33
2083 3288 1.064685 GGTCCGAATCCCCAAGATTGT 60.065 52.381 0.00 0.00 45.52 2.71
2097 3302 4.456535 TCTTCATTTTTCAACTGGTCCGA 58.543 39.130 0.00 0.00 0.00 4.55
2098 3303 4.829064 TCTTCATTTTTCAACTGGTCCG 57.171 40.909 0.00 0.00 0.00 4.79
2099 3304 6.363357 CGATTTCTTCATTTTTCAACTGGTCC 59.637 38.462 0.00 0.00 0.00 4.46
2100 3305 6.363357 CCGATTTCTTCATTTTTCAACTGGTC 59.637 38.462 0.00 0.00 0.00 4.02
2102 3307 5.119125 GCCGATTTCTTCATTTTTCAACTGG 59.881 40.000 0.00 0.00 0.00 4.00
2103 3308 5.922544 AGCCGATTTCTTCATTTTTCAACTG 59.077 36.000 0.00 0.00 0.00 3.16
2106 3311 5.695816 CCAAGCCGATTTCTTCATTTTTCAA 59.304 36.000 0.00 0.00 0.00 2.69
2110 3315 3.617288 GCCCAAGCCGATTTCTTCATTTT 60.617 43.478 0.00 0.00 0.00 1.82
2114 3319 2.566824 GCCCAAGCCGATTTCTTCA 58.433 52.632 0.00 0.00 0.00 3.02
2125 3330 2.361737 GGAGGAGTTGGCCCAAGC 60.362 66.667 0.00 0.00 38.76 4.01
2237 3502 4.817318 TTTGAGTTTCCTGGCTGTTTTT 57.183 36.364 0.00 0.00 0.00 1.94
2238 3503 4.443315 CCATTTGAGTTTCCTGGCTGTTTT 60.443 41.667 0.00 0.00 0.00 2.43
2252 3517 6.868339 CGCCTTTTTCTATTTTCCATTTGAGT 59.132 34.615 0.00 0.00 0.00 3.41
2255 3520 6.868339 AGTCGCCTTTTTCTATTTTCCATTTG 59.132 34.615 0.00 0.00 0.00 2.32
2271 3536 1.302832 CTGGGCTTGAGTCGCCTTT 60.303 57.895 8.70 0.00 46.73 3.11
2318 3619 3.951680 ACTTTGGAAACACCGTCTTCAAT 59.048 39.130 0.00 0.00 42.67 2.57
2333 3634 0.684535 TGATGCTGGTCGACTTTGGA 59.315 50.000 16.46 7.53 0.00 3.53
2344 3654 2.338015 GCAGTGGTGGTGATGCTGG 61.338 63.158 0.00 0.00 35.78 4.85
2368 3678 0.327924 TGTGCCACTGGGACTATTGG 59.672 55.000 19.50 0.00 44.53 3.16
2369 3679 2.292267 GATGTGCCACTGGGACTATTG 58.708 52.381 19.50 0.00 44.53 1.90
2371 3681 0.465705 CGATGTGCCACTGGGACTAT 59.534 55.000 19.50 11.63 44.53 2.12
2374 3684 2.436646 CCGATGTGCCACTGGGAC 60.437 66.667 12.70 12.70 44.48 4.46
2380 3690 3.179265 CGTCGACCGATGTGCCAC 61.179 66.667 10.58 0.00 39.56 5.01
2399 3709 5.239525 CCCTTCAACTGTTTCTTCGATTTCT 59.760 40.000 0.00 0.00 0.00 2.52
2406 3716 6.320418 TCTTTAACCCCTTCAACTGTTTCTTC 59.680 38.462 0.00 0.00 0.00 2.87
2413 3723 5.560724 TCATCTCTTTAACCCCTTCAACTG 58.439 41.667 0.00 0.00 0.00 3.16
2417 3727 8.556589 TCATTTATCATCTCTTTAACCCCTTCA 58.443 33.333 0.00 0.00 0.00 3.02
2418 3728 8.980481 TCATTTATCATCTCTTTAACCCCTTC 57.020 34.615 0.00 0.00 0.00 3.46
2432 3742 9.499479 TCTAATTTCTGGAGCTCATTTATCATC 57.501 33.333 17.19 0.00 0.00 2.92
2438 3748 7.765695 TTTGTCTAATTTCTGGAGCTCATTT 57.234 32.000 17.19 0.36 0.00 2.32
2439 3749 7.833183 AGATTTGTCTAATTTCTGGAGCTCATT 59.167 33.333 17.19 8.68 0.00 2.57
2449 3759 8.787852 GGTTCTTGTCAGATTTGTCTAATTTCT 58.212 33.333 0.00 0.00 0.00 2.52
2451 3761 7.505585 TGGGTTCTTGTCAGATTTGTCTAATTT 59.494 33.333 0.00 0.00 0.00 1.82
2487 3827 8.519799 TTCTTCTTCTCTGTGGTTTTGTTAAT 57.480 30.769 0.00 0.00 0.00 1.40
2500 3840 9.197694 TCTTTACGATTTCTTTCTTCTTCTCTG 57.802 33.333 0.00 0.00 0.00 3.35
2615 3964 9.845740 TGGCATACATACTTGTCATAAACTAAT 57.154 29.630 0.00 0.00 37.28 1.73
2616 3965 9.674068 TTGGCATACATACTTGTCATAAACTAA 57.326 29.630 0.00 0.00 37.28 2.24
2617 3966 9.845740 ATTGGCATACATACTTGTCATAAACTA 57.154 29.630 0.00 0.00 37.28 2.24
2637 3986 1.541118 TGGTCTCCTCCCATTGGCA 60.541 57.895 0.00 0.00 0.00 4.92
2638 3987 1.225704 CTGGTCTCCTCCCATTGGC 59.774 63.158 0.00 0.00 0.00 4.52
2718 4079 0.884704 TGCTTCTTGTCCCGTTGAGC 60.885 55.000 0.00 0.00 0.00 4.26
2725 4086 1.174712 TGCTTGCTGCTTCTTGTCCC 61.175 55.000 0.00 0.00 43.37 4.46
2732 4093 2.288640 ACCTTGAAATGCTTGCTGCTTC 60.289 45.455 0.00 0.00 43.37 3.86
2734 4095 1.271656 GACCTTGAAATGCTTGCTGCT 59.728 47.619 0.00 0.00 43.37 4.24
2735 4096 1.670967 GGACCTTGAAATGCTTGCTGC 60.671 52.381 0.00 0.00 43.25 5.25
2736 4097 1.614903 TGGACCTTGAAATGCTTGCTG 59.385 47.619 0.00 0.00 0.00 4.41
2785 4146 3.034635 ACAGTATCAAGGTAGAGGCCAG 58.965 50.000 5.01 0.00 0.00 4.85
2811 4172 5.065613 TCCATATGCTGGCCTATTTTTCT 57.934 39.130 3.32 0.00 45.52 2.52
2812 4173 5.990120 ATCCATATGCTGGCCTATTTTTC 57.010 39.130 3.32 0.00 45.52 2.29
2813 4174 6.435277 CACTATCCATATGCTGGCCTATTTTT 59.565 38.462 3.32 0.00 45.52 1.94
2816 4177 4.784838 TCACTATCCATATGCTGGCCTATT 59.215 41.667 3.32 0.00 45.52 1.73
2818 4179 3.790126 TCACTATCCATATGCTGGCCTA 58.210 45.455 3.32 0.00 45.52 3.93
2835 4196 3.073650 AGAATCTGGCAGGTTTCTTCACT 59.926 43.478 15.31 2.78 0.00 3.41
2836 4197 3.416156 AGAATCTGGCAGGTTTCTTCAC 58.584 45.455 15.31 0.18 0.00 3.18
2847 4208 0.108186 ATGTCGCGAAGAATCTGGCA 60.108 50.000 12.06 0.55 0.00 4.92
2888 4249 6.434018 GCAAAGAGCTTCATACAGAATTCT 57.566 37.500 0.88 0.88 41.15 2.40
2924 4285 1.351017 CTGCTCCTCTTGGGTTTGGTA 59.649 52.381 0.00 0.00 36.25 3.25
2980 4341 4.358851 CAATGATTTTTGTGTGACACGGT 58.641 39.130 11.51 0.00 37.14 4.83
2986 4347 3.387374 ACTGGGCAATGATTTTTGTGTGA 59.613 39.130 0.00 0.00 0.00 3.58
3031 4392 5.188988 TCTGTACTCTTTAGGTAGCTCCA 57.811 43.478 0.00 0.00 39.02 3.86
3053 4414 6.942576 AGATAGCAAGGTACAACAAACAGAAT 59.057 34.615 0.00 0.00 0.00 2.40
3055 4416 5.865085 AGATAGCAAGGTACAACAAACAGA 58.135 37.500 0.00 0.00 0.00 3.41
3091 4452 1.298859 GGTTGACCGTCTCATGGCAC 61.299 60.000 0.00 0.00 0.00 5.01
3092 4453 1.003839 GGTTGACCGTCTCATGGCA 60.004 57.895 0.00 0.00 0.00 4.92
3093 4454 0.321653 AAGGTTGACCGTCTCATGGC 60.322 55.000 0.00 0.00 42.08 4.40
3098 4459 2.758979 TCCTATCAAGGTTGACCGTCTC 59.241 50.000 0.00 0.00 44.09 3.36
3157 4518 2.125912 CTGAAGAGGACCGGCGTG 60.126 66.667 6.01 0.00 0.00 5.34
3158 4519 2.600769 ACTGAAGAGGACCGGCGT 60.601 61.111 6.01 0.00 0.00 5.68
3162 4523 1.186200 TCATCCACTGAAGAGGACCG 58.814 55.000 0.00 0.00 37.62 4.79
3212 4573 1.101049 CAGGACAAACAAGGCACCGT 61.101 55.000 0.00 0.00 0.00 4.83
3246 4607 0.676151 CAGCTCTTGACCCTTCCAGC 60.676 60.000 0.00 0.00 0.00 4.85
3253 4614 1.001641 ACCATGCAGCTCTTGACCC 60.002 57.895 0.00 0.00 0.00 4.46
3268 4629 4.037222 TCCATAAACTAGCTCATCCACCA 58.963 43.478 0.00 0.00 0.00 4.17
3276 4637 7.095607 CGTGGTAATGAATCCATAAACTAGCTC 60.096 40.741 0.00 0.00 36.09 4.09
3301 4662 2.892425 GCTCCTTGATGGCGACCG 60.892 66.667 0.00 0.00 35.26 4.79
3315 4687 0.935898 CATGTCTCCAGAATGCGCTC 59.064 55.000 9.73 0.00 31.97 5.03
3333 4705 0.890542 GCCAAGTGATGTGACAGCCA 60.891 55.000 0.00 0.00 0.00 4.75
3404 4776 9.799106 TGAGATGACTTTTTAAAGAAATCCTCT 57.201 29.630 9.09 4.61 39.31 3.69
3416 4788 8.150945 AGCTTGTAGAACTGAGATGACTTTTTA 58.849 33.333 0.00 0.00 0.00 1.52
3436 4808 2.836981 AGATCTAGCACCTTGAGCTTGT 59.163 45.455 0.00 0.00 43.25 3.16
3499 4874 7.120285 GCATTACTATGTTCCTGCATATGTCAT 59.880 37.037 4.29 0.00 34.12 3.06
3515 4890 6.531948 GGCCGAGATACTTTAGCATTACTATG 59.468 42.308 0.00 0.00 34.76 2.23
3519 4894 4.686554 CAGGCCGAGATACTTTAGCATTAC 59.313 45.833 0.00 0.00 0.00 1.89
3527 4902 1.123928 CCCTCAGGCCGAGATACTTT 58.876 55.000 21.43 0.00 45.45 2.66
3554 4930 1.033746 CACTGGGCAGCCTGGTAATG 61.034 60.000 12.43 0.00 0.00 1.90
3555 4931 1.207488 TCACTGGGCAGCCTGGTAAT 61.207 55.000 12.43 0.00 0.00 1.89
3617 4993 2.972713 GGCAGACATAGGGATCTTGGTA 59.027 50.000 0.00 0.00 0.00 3.25
3626 5002 2.787473 TTCTTGTGGCAGACATAGGG 57.213 50.000 0.00 0.00 33.40 3.53
3630 5006 4.885907 CAGGATATTTCTTGTGGCAGACAT 59.114 41.667 0.00 0.00 33.40 3.06
3631 5007 4.264253 CAGGATATTTCTTGTGGCAGACA 58.736 43.478 0.00 0.00 0.00 3.41
3638 5014 3.797039 TCGGAGCAGGATATTTCTTGTG 58.203 45.455 0.00 0.00 31.82 3.33
3671 5047 1.166531 GCTTTCGACCAGCCAACAGT 61.167 55.000 4.66 0.00 0.00 3.55
3685 5491 3.118445 AGCTATCAGACCCTTCAGCTTTC 60.118 47.826 0.00 0.00 35.94 2.62
3713 5519 4.214980 ACTGCTTTGAATTGAGTCAACG 57.785 40.909 7.96 0.00 37.24 4.10
3724 5530 5.008019 GTCTTGTCATCAGAACTGCTTTGAA 59.992 40.000 0.00 0.00 0.00 2.69
3756 5586 0.977395 AGTACCTCCACAAGCTCCAC 59.023 55.000 0.00 0.00 0.00 4.02
3763 5593 2.503331 CATTGCACAGTACCTCCACAA 58.497 47.619 0.00 0.00 0.00 3.33
3817 5647 3.074412 GGACTTGAATCAACATGACCGT 58.926 45.455 0.00 0.00 0.00 4.83
3845 5684 1.555075 GGGATCTGCACACTGGAGTAA 59.445 52.381 0.00 0.00 37.12 2.24
3885 5724 2.039746 TGGACAATACTTCCACACCCAG 59.960 50.000 0.00 0.00 38.28 4.45
3896 5735 3.245229 TGGGCTTGACATTGGACAATACT 60.245 43.478 0.00 0.00 0.00 2.12
3937 5776 5.945784 AGGTCATTTAGAGTTGCAATGCTTA 59.054 36.000 6.82 0.00 0.00 3.09
3939 5778 4.157289 CAGGTCATTTAGAGTTGCAATGCT 59.843 41.667 6.82 5.81 0.00 3.79
3940 5779 4.156556 TCAGGTCATTTAGAGTTGCAATGC 59.843 41.667 0.59 0.00 0.00 3.56
3946 5785 5.936956 AGCTTCTTCAGGTCATTTAGAGTTG 59.063 40.000 0.00 0.00 0.00 3.16
4028 5867 1.405661 CGGAGGGACTTGTTTAGGAGC 60.406 57.143 0.00 0.00 41.55 4.70
4038 5877 0.321996 GACAGAAAGCGGAGGGACTT 59.678 55.000 0.00 0.00 41.55 3.01
4094 5933 4.380531 TGTTTACCAGACTCAGCTTTGAG 58.619 43.478 1.57 1.57 41.45 3.02
4159 6043 0.105964 TTTGATATCCTCGGGGCACG 59.894 55.000 0.68 0.68 46.11 5.34
4167 6051 5.007136 GTGTGCTAGTGCTTTTGATATCCTC 59.993 44.000 0.00 0.00 40.48 3.71
4169 6053 4.635765 TGTGTGCTAGTGCTTTTGATATCC 59.364 41.667 0.00 0.00 40.48 2.59
4171 6055 6.573664 TTTGTGTGCTAGTGCTTTTGATAT 57.426 33.333 0.00 0.00 40.48 1.63
4172 6056 6.016360 ACATTTGTGTGCTAGTGCTTTTGATA 60.016 34.615 0.00 0.00 40.48 2.15
4173 6057 4.916983 TTTGTGTGCTAGTGCTTTTGAT 57.083 36.364 0.00 0.00 40.48 2.57
4174 6058 4.097741 ACATTTGTGTGCTAGTGCTTTTGA 59.902 37.500 0.00 0.00 40.48 2.69
4175 6059 4.207635 CACATTTGTGTGCTAGTGCTTTTG 59.792 41.667 2.48 0.00 40.96 2.44
4176 6060 4.362279 CACATTTGTGTGCTAGTGCTTTT 58.638 39.130 2.48 0.00 40.96 2.27
4197 6081 5.182570 CAGTCAATGATTCAAGAAGCTTCCA 59.817 40.000 22.81 12.58 0.00 3.53
4213 6097 5.987347 AGTTGCTTTCCATTTTCAGTCAATG 59.013 36.000 0.00 0.00 0.00 2.82
4278 6162 2.800250 CTTGGCAAGGACCTTCAGATT 58.200 47.619 19.55 0.00 0.00 2.40
4333 6217 1.201965 GCTTGCTCTCATTGTACGCAC 60.202 52.381 0.00 0.00 0.00 5.34
4364 6248 8.704849 TGTTGAGATTTTTGAATTCTCCCTTA 57.295 30.769 7.05 0.00 37.19 2.69
4416 6300 6.420008 GCTCCATTATCAAATGTGATTTCAGC 59.580 38.462 3.06 2.05 42.03 4.26
4480 6364 4.824537 TGACTCCACTGATAGAGACTATGC 59.175 45.833 0.00 0.00 34.13 3.14
4552 6436 5.892686 TCAAATAATGAATGCACCATCTCCA 59.107 36.000 4.15 0.00 34.30 3.86
4556 6440 7.517734 GCATTGTCAAATAATGAATGCACCATC 60.518 37.037 0.00 0.00 43.53 3.51
4560 6444 5.581479 TGGCATTGTCAAATAATGAATGCAC 59.419 36.000 14.86 6.85 44.79 4.57
4572 6456 5.053145 GGTTATGTGTTTGGCATTGTCAAA 58.947 37.500 12.23 12.23 34.64 2.69
4638 6522 7.944729 TCTTCTTATTGCTAGCAAGGATTTT 57.055 32.000 31.88 18.34 39.47 1.82
4649 6533 3.393800 GGAGCGCATCTTCTTATTGCTA 58.606 45.455 11.47 0.00 34.23 3.49
4650 6534 2.216898 GGAGCGCATCTTCTTATTGCT 58.783 47.619 11.47 0.00 34.23 3.91
4655 6539 2.362397 CACTAGGGAGCGCATCTTCTTA 59.638 50.000 11.47 0.00 0.00 2.10
4656 6540 1.137872 CACTAGGGAGCGCATCTTCTT 59.862 52.381 11.47 0.00 0.00 2.52
4657 6541 0.749649 CACTAGGGAGCGCATCTTCT 59.250 55.000 11.47 8.87 0.00 2.85
4658 6542 0.878086 GCACTAGGGAGCGCATCTTC 60.878 60.000 11.47 0.00 0.00 2.87
4669 6553 0.539051 CTTCCACAGGAGCACTAGGG 59.461 60.000 0.00 0.00 31.21 3.53
4680 6564 6.150976 TGACTGCCATTATAAAACTTCCACAG 59.849 38.462 0.00 0.00 0.00 3.66
4683 6567 7.118723 AGATGACTGCCATTATAAAACTTCCA 58.881 34.615 0.00 0.00 35.17 3.53
4706 6590 9.448438 TTTTGGAATTCATCTTCGAAGATAAGA 57.552 29.630 34.03 26.08 43.65 2.10
4716 6600 5.866092 GGTTGAGCTTTTGGAATTCATCTTC 59.134 40.000 7.93 0.00 0.00 2.87
4758 6645 7.631594 GCTTATCTTGGTTATGTCAGACTCAGA 60.632 40.741 1.31 0.00 0.00 3.27
4759 6646 6.478344 GCTTATCTTGGTTATGTCAGACTCAG 59.522 42.308 1.31 0.00 0.00 3.35
4760 6647 6.155221 AGCTTATCTTGGTTATGTCAGACTCA 59.845 38.462 1.31 0.00 0.00 3.41
4761 6648 6.578023 AGCTTATCTTGGTTATGTCAGACTC 58.422 40.000 1.31 0.00 0.00 3.36
4762 6649 6.552445 AGCTTATCTTGGTTATGTCAGACT 57.448 37.500 1.31 0.00 0.00 3.24
4763 6650 7.617041 AAAGCTTATCTTGGTTATGTCAGAC 57.383 36.000 0.00 0.00 34.67 3.51
4767 6654 7.859325 TGGTAAAGCTTATCTTGGTTATGTC 57.141 36.000 0.00 0.00 34.67 3.06
4772 6659 5.476945 CCTGTTGGTAAAGCTTATCTTGGTT 59.523 40.000 0.00 0.00 34.67 3.67
4791 6678 6.019748 TCTTCTCAAGATTAGGAGACCTGTT 58.980 40.000 0.00 0.00 39.73 3.16
4833 6720 3.053831 TCCGGACAGAGAAACAATTCC 57.946 47.619 0.00 0.00 36.12 3.01
4834 6721 4.201724 CGATTCCGGACAGAGAAACAATTC 60.202 45.833 1.83 0.00 35.70 2.17
4862 6749 2.098770 CAGCTCCTTTAATGCAGGAAGC 59.901 50.000 0.00 0.00 40.09 3.86
4892 6779 0.190069 TAGGGACACTGTCACCACCT 59.810 55.000 7.87 8.57 36.49 4.00
4893 6780 1.053424 TTAGGGACACTGTCACCACC 58.947 55.000 7.87 1.24 36.49 4.61
4894 6781 4.020485 ACTTATTAGGGACACTGTCACCAC 60.020 45.833 7.87 0.00 36.49 4.16
4939 6826 8.113462 TGGGTTTATAGTCAAGCCTAATCTTTT 58.887 33.333 5.67 0.00 41.59 2.27
4955 6842 3.256704 TGGCCTATCCCTGGGTTTATAG 58.743 50.000 13.56 12.19 0.00 1.31
4963 6850 6.552008 TCTTATTTTTATGGCCTATCCCTGG 58.448 40.000 3.32 0.00 0.00 4.45
4966 6853 8.706322 TTCTTCTTATTTTTATGGCCTATCCC 57.294 34.615 3.32 0.00 0.00 3.85
4983 6873 8.506168 TCTGCTTCTCTTTTGTTTTCTTCTTA 57.494 30.769 0.00 0.00 0.00 2.10
5031 6933 2.041115 GCCAGTTCTTCGCCTTCCC 61.041 63.158 0.00 0.00 0.00 3.97
5043 6945 2.032681 GTTCCTCCAGCGCCAGTT 59.967 61.111 2.29 0.00 0.00 3.16
5045 6947 2.435586 CAGTTCCTCCAGCGCCAG 60.436 66.667 2.29 0.00 0.00 4.85
5049 6951 1.078848 CCCTTCAGTTCCTCCAGCG 60.079 63.158 0.00 0.00 0.00 5.18
5082 6984 3.242870 GCAGGAATTGACGATGAATGGAC 60.243 47.826 0.00 0.00 0.00 4.02
5093 6995 4.158394 ACACATACCATTGCAGGAATTGAC 59.842 41.667 0.00 0.00 0.00 3.18
5105 7007 3.636300 AGCACACACAAACACATACCATT 59.364 39.130 0.00 0.00 0.00 3.16
5134 7036 2.102252 ACGGAAACACACAATGGCAAAT 59.898 40.909 0.00 0.00 0.00 2.32
5189 7092 3.253188 CACCCACACCACTTAAATCACTG 59.747 47.826 0.00 0.00 0.00 3.66
5259 7196 4.469552 CATATGCACAACCATTATGCTCG 58.530 43.478 0.00 0.00 40.13 5.03
5390 17668 5.439721 ACTCAGCCAAAGCACATGATATAA 58.560 37.500 0.00 0.00 43.56 0.98
5440 17730 9.087424 AGCTGCGTTGTTATGTATACATATATG 57.913 33.333 23.01 17.14 38.49 1.78
5457 17748 3.171987 CTGCTGGTAGCTGCGTTG 58.828 61.111 17.36 7.79 42.97 4.10
5538 17847 2.691011 CCACACTAGCTAGGGAGAAGAC 59.309 54.545 29.71 0.00 0.00 3.01
5557 17866 2.224572 ACCATGTGCGGTTTAACTACCA 60.225 45.455 0.00 0.00 34.91 3.25
5839 18753 2.401351 GTACAAGTGACTCACGGTTCC 58.599 52.381 12.77 3.94 39.64 3.62
5879 18793 1.740380 CGTCGCATTGTCCTGAATCCT 60.740 52.381 0.00 0.00 0.00 3.24
5880 18794 0.652592 CGTCGCATTGTCCTGAATCC 59.347 55.000 0.00 0.00 0.00 3.01
5881 18795 0.026803 GCGTCGCATTGTCCTGAATC 59.973 55.000 13.44 0.00 0.00 2.52
5882 18796 1.369091 GGCGTCGCATTGTCCTGAAT 61.369 55.000 20.50 0.00 0.00 2.57
5883 18797 2.032634 GGCGTCGCATTGTCCTGAA 61.033 57.895 20.50 0.00 0.00 3.02
5899 18813 0.595095 CTGACAAGGAAGCTGTTGGC 59.405 55.000 8.21 5.82 42.19 4.52
6006 18923 4.205587 CTGGAATGGAAGATCAAAGGAGG 58.794 47.826 0.00 0.00 0.00 4.30
6013 18930 8.548025 TCATTTAAGTACTGGAATGGAAGATCA 58.452 33.333 21.84 6.96 31.97 2.92
6081 19009 3.327757 TGGCAGTCTTGACCAATAGAAGT 59.672 43.478 0.00 0.00 30.79 3.01
6084 19012 3.519107 TGATGGCAGTCTTGACCAATAGA 59.481 43.478 0.00 0.00 35.26 1.98
6087 19015 2.719739 CTGATGGCAGTCTTGACCAAT 58.280 47.619 0.00 0.00 37.37 3.16
6110 19038 3.485947 TGTTCAAATATTCAGTGCCGC 57.514 42.857 0.00 0.00 0.00 6.53
6122 19050 5.051816 CAGGTGCAAGACAATTGTTCAAAT 58.948 37.500 13.36 0.00 0.00 2.32
6162 19090 4.595762 TGGTACTGAGTGTGTTTCTACC 57.404 45.455 0.00 0.00 0.00 3.18
6178 19106 3.258372 TCCGGAATCATCTAGCATGGTAC 59.742 47.826 0.00 0.00 0.00 3.34
6179 19107 3.506398 TCCGGAATCATCTAGCATGGTA 58.494 45.455 0.00 4.27 0.00 3.25
6180 19108 2.329267 TCCGGAATCATCTAGCATGGT 58.671 47.619 0.00 1.62 0.00 3.55
6181 19109 3.070018 GTTCCGGAATCATCTAGCATGG 58.930 50.000 22.04 0.00 0.00 3.66
6182 19110 3.732212 TGTTCCGGAATCATCTAGCATG 58.268 45.455 22.04 0.00 0.00 4.06
6218 19146 2.479566 TAGGAAGAAGGTGCTGCAAG 57.520 50.000 2.77 0.00 0.00 4.01
6239 19167 2.099098 CACAGGAAAAGTGAACACCACC 59.901 50.000 1.11 1.36 46.87 4.61
6324 19252 2.046988 TAGGCCGACGACGAGACA 60.047 61.111 9.28 0.00 42.66 3.41
6325 19253 2.034472 GAGTAGGCCGACGACGAGAC 62.034 65.000 10.60 0.90 42.66 3.36
6326 19254 1.812922 GAGTAGGCCGACGACGAGA 60.813 63.158 10.60 0.00 42.66 4.04
6327 19255 2.708255 GAGTAGGCCGACGACGAG 59.292 66.667 10.60 0.00 42.66 4.18
6328 19256 2.821366 GGAGTAGGCCGACGACGA 60.821 66.667 10.60 0.00 42.66 4.20
6330 19258 2.488820 GTGGAGTAGGCCGACGAC 59.511 66.667 10.60 8.08 0.00 4.34
6331 19259 2.753043 GGTGGAGTAGGCCGACGA 60.753 66.667 10.60 0.00 0.00 4.20
6332 19260 2.754658 AGGTGGAGTAGGCCGACG 60.755 66.667 10.60 0.00 0.00 5.12
6334 19262 2.363795 CCAGGTGGAGTAGGCCGA 60.364 66.667 0.00 0.00 37.39 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.