Multiple sequence alignment - TraesCS2A01G580000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G580000 chr2A 100.000 6303 0 0 1 6303 772385939 772379637 0.000000e+00 11640.0
1 TraesCS2A01G580000 chr2A 94.040 1963 87 13 3412 5362 779969360 779971304 0.000000e+00 2950.0
2 TraesCS2A01G580000 chr2A 92.373 1062 64 8 2357 3415 779968260 779969307 0.000000e+00 1496.0
3 TraesCS2A01G580000 chr2A 92.920 565 36 4 5741 6303 40056226 40056788 0.000000e+00 819.0
4 TraesCS2A01G580000 chr2A 93.717 382 22 2 1981 2361 779948649 779949029 7.090000e-159 571.0
5 TraesCS2A01G580000 chr2A 87.000 200 21 5 5546 5741 779971370 779971568 2.960000e-53 220.0
6 TraesCS2A01G580000 chr2A 78.333 240 41 7 4995 5233 772346151 772346380 1.830000e-30 145.0
7 TraesCS2A01G580000 chr2A 96.970 33 0 1 178 209 709066939 709066907 3.000000e-03 54.7
8 TraesCS2A01G580000 chr2D 87.871 3339 168 92 1 3268 650758279 650755107 0.000000e+00 3703.0
9 TraesCS2A01G580000 chr2D 93.648 1952 91 16 3430 5362 650754605 650752668 0.000000e+00 2887.0
10 TraesCS2A01G580000 chr2D 90.820 305 27 1 3619 3923 617519115 617519418 2.120000e-109 407.0
11 TraesCS2A01G580000 chr2B 83.265 3412 287 125 121 3415 787968856 787965612 0.000000e+00 2876.0
12 TraesCS2A01G580000 chr2B 92.810 1975 94 15 3412 5362 787965547 787963597 0.000000e+00 2817.0
13 TraesCS2A01G580000 chr2B 89.357 949 83 13 3619 4560 609288664 609287727 0.000000e+00 1177.0
14 TraesCS2A01G580000 chr2B 91.566 747 50 10 3839 4581 57159285 57158548 0.000000e+00 1018.0
15 TraesCS2A01G580000 chr2B 93.073 563 35 4 5742 6303 793967338 793967897 0.000000e+00 821.0
16 TraesCS2A01G580000 chr2B 83.889 180 22 4 5547 5720 787963546 787963368 1.410000e-36 165.0
17 TraesCS2A01G580000 chr2B 77.966 236 43 6 4998 5233 787891571 787891797 8.520000e-29 139.0
18 TraesCS2A01G580000 chr2B 77.966 236 43 6 4998 5233 787908854 787909080 8.520000e-29 139.0
19 TraesCS2A01G580000 chr2B 77.824 239 44 6 4995 5233 787929486 787929715 8.520000e-29 139.0
20 TraesCS2A01G580000 chr2B 91.765 85 7 0 5396 5480 790112942 790113026 1.110000e-22 119.0
21 TraesCS2A01G580000 chr2B 96.970 33 0 1 178 209 682203175 682203143 3.000000e-03 54.7
22 TraesCS2A01G580000 chr1A 91.410 943 76 4 3619 4560 520853469 520854407 0.000000e+00 1288.0
23 TraesCS2A01G580000 chr1A 96.071 560 22 0 5744 6303 585072060 585071501 0.000000e+00 913.0
24 TraesCS2A01G580000 chr1A 92.883 562 37 3 5743 6303 532810114 532809555 0.000000e+00 813.0
25 TraesCS2A01G580000 chr1A 100.000 30 0 0 180 209 470393111 470393082 8.830000e-04 56.5
26 TraesCS2A01G580000 chr3A 90.919 947 77 6 3619 4560 703931197 703930255 0.000000e+00 1264.0
27 TraesCS2A01G580000 chr6D 90.397 958 72 7 3619 4571 384291675 384290733 0.000000e+00 1242.0
28 TraesCS2A01G580000 chr6D 88.369 662 58 13 3619 4278 210874102 210874746 0.000000e+00 778.0
29 TraesCS2A01G580000 chr6D 90.820 305 27 1 3619 3923 291655594 291655897 2.120000e-109 407.0
30 TraesCS2A01G580000 chr6D 89.895 287 25 3 4285 4571 210881629 210881911 3.590000e-97 366.0
31 TraesCS2A01G580000 chr6A 90.295 948 80 5 3619 4560 425738219 425739160 0.000000e+00 1230.0
32 TraesCS2A01G580000 chr6A 88.805 661 57 12 3619 4278 270433793 270433149 0.000000e+00 795.0
33 TraesCS2A01G580000 chr6A 90.698 430 35 4 4160 4588 391427911 391428336 9.170000e-158 568.0
34 TraesCS2A01G580000 chr6A 93.103 87 6 0 5395 5481 349779913 349779827 1.840000e-25 128.0
35 TraesCS2A01G580000 chr6A 88.298 94 11 0 5396 5489 20250076 20250169 5.160000e-21 113.0
36 TraesCS2A01G580000 chr4B 90.167 956 77 8 3619 4573 159346502 159347441 0.000000e+00 1229.0
37 TraesCS2A01G580000 chr7A 89.781 959 87 7 3619 4577 299380719 299379772 0.000000e+00 1218.0
38 TraesCS2A01G580000 chr7A 93.036 560 36 3 5745 6303 546591611 546591054 0.000000e+00 815.0
39 TraesCS2A01G580000 chr3B 92.152 739 46 9 3839 4573 795066638 795067368 0.000000e+00 1033.0
40 TraesCS2A01G580000 chr3B 100.000 31 0 0 183 213 807188150 807188120 2.450000e-04 58.4
41 TraesCS2A01G580000 chr6B 91.995 737 48 8 3839 4573 168771148 168771875 0.000000e+00 1024.0
42 TraesCS2A01G580000 chr7B 90.495 747 58 10 3839 4581 49030854 49030117 0.000000e+00 974.0
43 TraesCS2A01G580000 chr5A 96.071 560 22 0 5744 6303 602997063 602996504 0.000000e+00 913.0
44 TraesCS2A01G580000 chr5A 86.833 281 30 6 3430 3703 621681116 621681396 2.210000e-79 307.0
45 TraesCS2A01G580000 chr5A 92.941 85 6 0 5396 5480 393474466 393474382 2.390000e-24 124.0
46 TraesCS2A01G580000 chr5A 90.805 87 8 0 5396 5482 645994240 645994326 3.990000e-22 117.0
47 TraesCS2A01G580000 chr1B 93.214 560 35 3 5745 6303 98449182 98448625 0.000000e+00 821.0
48 TraesCS2A01G580000 chr1B 92.705 562 37 3 5743 6303 49865768 49866326 0.000000e+00 808.0
49 TraesCS2A01G580000 chr1B 92.308 572 39 5 5733 6303 133450430 133449863 0.000000e+00 808.0
50 TraesCS2A01G580000 chr1B 88.435 441 34 11 3430 3857 235376343 235375907 3.370000e-142 516.0
51 TraesCS2A01G580000 chr1B 86.792 53 5 2 159 209 495142946 495142894 2.450000e-04 58.4
52 TraesCS2A01G580000 chr1D 80.861 674 109 13 3901 4571 12302171 12302827 4.360000e-141 512.0
53 TraesCS2A01G580000 chr5D 87.330 442 42 9 3430 3857 390802023 390801582 1.580000e-135 494.0
54 TraesCS2A01G580000 chr5D 91.111 90 7 1 5395 5483 509426470 509426559 3.090000e-23 121.0
55 TraesCS2A01G580000 chr5D 100.000 30 0 0 182 211 335221888 335221859 8.830000e-04 56.5
56 TraesCS2A01G580000 chr4D 89.091 275 30 0 3629 3903 465052418 465052692 6.050000e-90 342.0
57 TraesCS2A01G580000 chr4D 87.129 101 11 2 5383 5482 414221206 414221107 5.160000e-21 113.0
58 TraesCS2A01G580000 chr3D 91.860 86 7 0 5395 5480 25970310 25970395 3.090000e-23 121.0
59 TraesCS2A01G580000 chr3D 100.000 29 0 0 181 209 481931035 481931063 3.000000e-03 54.7
60 TraesCS2A01G580000 chr7D 90.698 86 8 0 5395 5480 164195908 164195993 1.440000e-21 115.0
61 TraesCS2A01G580000 chr7D 100.000 29 0 0 181 209 625211187 625211215 3.000000e-03 54.7
62 TraesCS2A01G580000 chrUn 100.000 30 0 0 180 209 31874373 31874344 8.830000e-04 56.5
63 TraesCS2A01G580000 chr4A 100.000 28 0 0 180 207 57518534 57518561 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G580000 chr2A 772379637 772385939 6302 True 11640.000000 11640 100.000000 1 6303 1 chr2A.!!$R2 6302
1 TraesCS2A01G580000 chr2A 779968260 779971568 3308 False 1555.333333 2950 91.137667 2357 5741 3 chr2A.!!$F4 3384
2 TraesCS2A01G580000 chr2A 40056226 40056788 562 False 819.000000 819 92.920000 5741 6303 1 chr2A.!!$F1 562
3 TraesCS2A01G580000 chr2D 650752668 650758279 5611 True 3295.000000 3703 90.759500 1 5362 2 chr2D.!!$R1 5361
4 TraesCS2A01G580000 chr2B 787963368 787968856 5488 True 1952.666667 2876 86.654667 121 5720 3 chr2B.!!$R4 5599
5 TraesCS2A01G580000 chr2B 609287727 609288664 937 True 1177.000000 1177 89.357000 3619 4560 1 chr2B.!!$R2 941
6 TraesCS2A01G580000 chr2B 57158548 57159285 737 True 1018.000000 1018 91.566000 3839 4581 1 chr2B.!!$R1 742
7 TraesCS2A01G580000 chr2B 793967338 793967897 559 False 821.000000 821 93.073000 5742 6303 1 chr2B.!!$F5 561
8 TraesCS2A01G580000 chr1A 520853469 520854407 938 False 1288.000000 1288 91.410000 3619 4560 1 chr1A.!!$F1 941
9 TraesCS2A01G580000 chr1A 585071501 585072060 559 True 913.000000 913 96.071000 5744 6303 1 chr1A.!!$R3 559
10 TraesCS2A01G580000 chr1A 532809555 532810114 559 True 813.000000 813 92.883000 5743 6303 1 chr1A.!!$R2 560
11 TraesCS2A01G580000 chr3A 703930255 703931197 942 True 1264.000000 1264 90.919000 3619 4560 1 chr3A.!!$R1 941
12 TraesCS2A01G580000 chr6D 384290733 384291675 942 True 1242.000000 1242 90.397000 3619 4571 1 chr6D.!!$R1 952
13 TraesCS2A01G580000 chr6D 210874102 210874746 644 False 778.000000 778 88.369000 3619 4278 1 chr6D.!!$F1 659
14 TraesCS2A01G580000 chr6A 425738219 425739160 941 False 1230.000000 1230 90.295000 3619 4560 1 chr6A.!!$F3 941
15 TraesCS2A01G580000 chr6A 270433149 270433793 644 True 795.000000 795 88.805000 3619 4278 1 chr6A.!!$R1 659
16 TraesCS2A01G580000 chr4B 159346502 159347441 939 False 1229.000000 1229 90.167000 3619 4573 1 chr4B.!!$F1 954
17 TraesCS2A01G580000 chr7A 299379772 299380719 947 True 1218.000000 1218 89.781000 3619 4577 1 chr7A.!!$R1 958
18 TraesCS2A01G580000 chr7A 546591054 546591611 557 True 815.000000 815 93.036000 5745 6303 1 chr7A.!!$R2 558
19 TraesCS2A01G580000 chr3B 795066638 795067368 730 False 1033.000000 1033 92.152000 3839 4573 1 chr3B.!!$F1 734
20 TraesCS2A01G580000 chr6B 168771148 168771875 727 False 1024.000000 1024 91.995000 3839 4573 1 chr6B.!!$F1 734
21 TraesCS2A01G580000 chr7B 49030117 49030854 737 True 974.000000 974 90.495000 3839 4581 1 chr7B.!!$R1 742
22 TraesCS2A01G580000 chr5A 602996504 602997063 559 True 913.000000 913 96.071000 5744 6303 1 chr5A.!!$R2 559
23 TraesCS2A01G580000 chr1B 98448625 98449182 557 True 821.000000 821 93.214000 5745 6303 1 chr1B.!!$R1 558
24 TraesCS2A01G580000 chr1B 49865768 49866326 558 False 808.000000 808 92.705000 5743 6303 1 chr1B.!!$F1 560
25 TraesCS2A01G580000 chr1B 133449863 133450430 567 True 808.000000 808 92.308000 5733 6303 1 chr1B.!!$R2 570
26 TraesCS2A01G580000 chr1D 12302171 12302827 656 False 512.000000 512 80.861000 3901 4571 1 chr1D.!!$F1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 790 0.045469 ATTTCCTCCTCCTGCTCCCT 59.955 55.0 0.00 0.00 0.00 4.20 F
1610 1685 0.099082 CGTCGTCTCCCTGTAAGCTC 59.901 60.0 0.00 0.00 0.00 4.09 F
1810 1902 0.037882 ATGCGGATAGATGCTCGGTG 60.038 55.0 0.00 0.00 0.00 4.94 F
2106 2204 0.098376 GCAAGAGCTGTATGTGCTGC 59.902 55.0 0.00 0.00 41.30 5.25 F
3177 3333 0.107459 GGAACTGCCTCCAGGATGAC 60.107 60.0 0.00 0.00 43.53 3.06 F
3238 3394 0.391793 GTGACCCAGCCTCTACAAGC 60.392 60.0 0.00 0.00 0.00 4.01 F
5060 5644 1.293924 CTCTACATTTCTGCAGGCCG 58.706 55.0 15.13 2.81 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1717 1808 0.037303 TCGTAGTCACCGAACCCTCT 59.963 55.000 0.00 0.00 0.00 3.69 R
3224 3380 1.550524 TGTGTAGCTTGTAGAGGCTGG 59.449 52.381 6.76 0.00 39.31 4.85 R
3577 4118 1.560923 AATTAGCAGCTGTAGACGCG 58.439 50.000 16.64 3.53 0.00 6.01 R
3635 4176 2.504367 AGTCGGTTGCTGCACTTTATT 58.496 42.857 0.00 0.00 0.00 1.40 R
5060 5644 0.391793 GGCTGCTGGAGGTACTTGAC 60.392 60.000 0.00 0.00 41.55 3.18 R
5080 5664 0.758685 CCAGCTTCCCGATCTCCTCT 60.759 60.000 0.00 0.00 0.00 3.69 R
5974 6579 1.004440 GATGGGAGATGGTAGCGCC 60.004 63.158 2.29 0.00 37.90 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.842280 TGTCAAATTTCGGTGAAGTATAAGTTT 58.158 29.630 0.00 0.00 0.00 2.66
65 66 7.973601 AGTTTGTTCCAATCAAATTTGTGTTC 58.026 30.769 17.47 4.79 37.18 3.18
79 80 8.800972 CAAATTTGTGTTCATGATATCCGAAAG 58.199 33.333 10.15 0.00 0.00 2.62
91 92 5.292589 TGATATCCGAAAGCGTTTTTACTCC 59.707 40.000 0.00 0.00 35.23 3.85
168 169 1.763200 GCTAAGCTTTACTCCGCGGC 61.763 60.000 23.51 6.73 0.00 6.53
176 178 0.973632 TTACTCCGCGGCATATCCAT 59.026 50.000 23.51 1.26 34.01 3.41
238 247 1.601903 CATATAAATGCGGGCACACGT 59.398 47.619 0.00 0.00 35.98 4.49
240 249 1.961793 ATAAATGCGGGCACACGTAT 58.038 45.000 0.00 0.00 40.87 3.06
248 257 3.243941 TGCGGGCACACGTATCTAATTAT 60.244 43.478 0.00 0.00 35.98 1.28
261 270 8.150945 ACGTATCTAATTATCATGAGCACCTTT 58.849 33.333 0.09 0.00 0.00 3.11
272 281 6.240894 TCATGAGCACCTTTAAAAGACTGAT 58.759 36.000 0.00 0.00 0.00 2.90
305 314 6.720309 TCTTGAGATCCACAAATTCACCATA 58.280 36.000 4.85 0.00 0.00 2.74
307 316 4.883585 TGAGATCCACAAATTCACCATAGC 59.116 41.667 0.00 0.00 0.00 2.97
358 373 6.736807 GCAAAATGCAAAAAGAAATGGAAC 57.263 33.333 0.00 0.00 44.26 3.62
403 418 4.763793 CCAGAAGGAACAGTGAAATCACAT 59.236 41.667 15.38 0.87 42.91 3.21
404 419 5.242393 CCAGAAGGAACAGTGAAATCACATT 59.758 40.000 15.38 9.10 42.91 2.71
420 436 4.979335 TCACATTCACAAATCACACCCTA 58.021 39.130 0.00 0.00 0.00 3.53
423 439 2.871096 TCACAAATCACACCCTACCC 57.129 50.000 0.00 0.00 0.00 3.69
454 485 6.268617 TGAAGAAGAAGATTCAAGGAGACAGA 59.731 38.462 0.00 0.00 32.66 3.41
489 520 8.181573 ACACACATTTAAACTAGTGTCAACAAG 58.818 33.333 15.85 9.28 42.79 3.16
500 531 9.662947 AACTAGTGTCAACAAGTTTAAACTAGT 57.337 29.630 20.83 18.02 46.71 2.57
501 532 9.095065 ACTAGTGTCAACAAGTTTAAACTAGTG 57.905 33.333 20.98 17.77 44.41 2.74
524 562 1.160137 GCCAACAAGACCAGTAGCAG 58.840 55.000 0.00 0.00 0.00 4.24
542 580 0.179045 AGACACGGCAAGCAGTCTTT 60.179 50.000 7.82 0.00 38.08 2.52
561 599 7.878127 CAGTCTTTACAAATTACTCCTCCTCAA 59.122 37.037 0.00 0.00 0.00 3.02
562 600 7.878644 AGTCTTTACAAATTACTCCTCCTCAAC 59.121 37.037 0.00 0.00 0.00 3.18
563 601 7.660208 GTCTTTACAAATTACTCCTCCTCAACA 59.340 37.037 0.00 0.00 0.00 3.33
564 602 8.383175 TCTTTACAAATTACTCCTCCTCAACAT 58.617 33.333 0.00 0.00 0.00 2.71
565 603 9.667107 CTTTACAAATTACTCCTCCTCAACATA 57.333 33.333 0.00 0.00 0.00 2.29
567 605 7.259088 ACAAATTACTCCTCCTCAACATACT 57.741 36.000 0.00 0.00 0.00 2.12
568 606 7.331791 ACAAATTACTCCTCCTCAACATACTC 58.668 38.462 0.00 0.00 0.00 2.59
569 607 7.038302 ACAAATTACTCCTCCTCAACATACTCA 60.038 37.037 0.00 0.00 0.00 3.41
570 608 7.682787 AATTACTCCTCCTCAACATACTCAT 57.317 36.000 0.00 0.00 0.00 2.90
571 609 6.716934 TTACTCCTCCTCAACATACTCATC 57.283 41.667 0.00 0.00 0.00 2.92
572 610 4.614475 ACTCCTCCTCAACATACTCATCA 58.386 43.478 0.00 0.00 0.00 3.07
583 621 6.268617 TCAACATACTCATCATCCTCCCTAAG 59.731 42.308 0.00 0.00 0.00 2.18
609 647 1.490910 GTCCCTCCCTAATCCACTTGG 59.509 57.143 0.00 0.00 0.00 3.61
613 651 2.438392 CCTCCCTAATCCACTTGGTACC 59.562 54.545 4.43 4.43 36.34 3.34
630 668 7.897565 ACTTGGTACCAGTACTAATTTCCTCTA 59.102 37.037 15.65 0.00 36.25 2.43
633 671 7.341256 TGGTACCAGTACTAATTTCCTCTACTG 59.659 40.741 11.60 0.00 35.88 2.74
716 754 4.150454 CCTCCGCTCCTCCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
717 755 2.042435 CTCCGCTCCTCCCCTCTT 60.042 66.667 0.00 0.00 0.00 2.85
746 784 2.880890 CGCCATTTATTTCCTCCTCCTG 59.119 50.000 0.00 0.00 0.00 3.86
751 789 1.807814 TATTTCCTCCTCCTGCTCCC 58.192 55.000 0.00 0.00 0.00 4.30
752 790 0.045469 ATTTCCTCCTCCTGCTCCCT 59.955 55.000 0.00 0.00 0.00 4.20
753 791 0.618968 TTTCCTCCTCCTGCTCCCTC 60.619 60.000 0.00 0.00 0.00 4.30
754 792 2.445654 CCTCCTCCTGCTCCCTCC 60.446 72.222 0.00 0.00 0.00 4.30
755 793 2.445654 CTCCTCCTGCTCCCTCCC 60.446 72.222 0.00 0.00 0.00 4.30
769 807 2.519541 TCCCCTCTCGCTGGATCG 60.520 66.667 0.00 0.00 0.00 3.69
783 821 1.003003 TGGATCGCCACAACATTCTCA 59.997 47.619 0.00 0.00 39.92 3.27
791 829 2.616510 CCACAACATTCTCACTCCCTCC 60.617 54.545 0.00 0.00 0.00 4.30
792 830 1.630878 ACAACATTCTCACTCCCTCCC 59.369 52.381 0.00 0.00 0.00 4.30
793 831 1.912043 CAACATTCTCACTCCCTCCCT 59.088 52.381 0.00 0.00 0.00 4.20
794 832 1.872773 ACATTCTCACTCCCTCCCTC 58.127 55.000 0.00 0.00 0.00 4.30
795 833 1.127343 CATTCTCACTCCCTCCCTCC 58.873 60.000 0.00 0.00 0.00 4.30
797 835 1.156322 TTCTCACTCCCTCCCTCCCT 61.156 60.000 0.00 0.00 0.00 4.20
798 836 1.075600 CTCACTCCCTCCCTCCCTC 60.076 68.421 0.00 0.00 0.00 4.30
799 837 1.547755 TCACTCCCTCCCTCCCTCT 60.548 63.158 0.00 0.00 0.00 3.69
800 838 1.382420 CACTCCCTCCCTCCCTCTG 60.382 68.421 0.00 0.00 0.00 3.35
801 839 2.285180 CTCCCTCCCTCCCTCTGG 59.715 72.222 0.00 0.00 0.00 3.86
802 840 2.204624 TCCCTCCCTCCCTCTGGA 60.205 66.667 0.00 0.00 38.75 3.86
803 841 1.630333 TCCCTCCCTCCCTCTGGAT 60.630 63.158 0.00 0.00 40.80 3.41
806 845 1.673928 CCTCCCTCCCTCTGGATCCT 61.674 65.000 14.23 0.00 40.80 3.24
818 857 1.532078 GGATCCTCTCCTCGTCCCC 60.532 68.421 3.84 0.00 41.29 4.81
1173 1243 5.340667 GCTTAAATGCTGTTCTTTTCTGACG 59.659 40.000 0.00 0.00 0.00 4.35
1201 1271 2.032681 GCCTGTCGCTTCCCTTGT 59.967 61.111 0.00 0.00 0.00 3.16
1205 1275 2.342648 GTCGCTTCCCTTGTCCGT 59.657 61.111 0.00 0.00 0.00 4.69
1206 1276 1.737008 GTCGCTTCCCTTGTCCGTC 60.737 63.158 0.00 0.00 0.00 4.79
1207 1277 2.434359 CGCTTCCCTTGTCCGTCC 60.434 66.667 0.00 0.00 0.00 4.79
1208 1278 2.434359 GCTTCCCTTGTCCGTCCG 60.434 66.667 0.00 0.00 0.00 4.79
1209 1279 2.264794 CTTCCCTTGTCCGTCCGG 59.735 66.667 0.00 0.00 0.00 5.14
1210 1280 3.310860 CTTCCCTTGTCCGTCCGGG 62.311 68.421 0.00 0.00 38.07 5.73
1211 1281 3.831727 TTCCCTTGTCCGTCCGGGA 62.832 63.158 0.00 0.00 43.75 5.14
1225 1297 2.990479 GGGATCACACCTCCGCTT 59.010 61.111 0.00 0.00 33.29 4.68
1227 1299 1.153349 GGATCACACCTCCGCTTCC 60.153 63.158 0.00 0.00 0.00 3.46
1242 1315 1.286257 GCTTCCTTCCATTTCCTCCCT 59.714 52.381 0.00 0.00 0.00 4.20
1246 1320 1.298953 CTTCCATTTCCTCCCTCCCA 58.701 55.000 0.00 0.00 0.00 4.37
1294 1368 1.202394 CCTCGCATCTTCTGTCCTGAG 60.202 57.143 0.00 0.00 0.00 3.35
1295 1369 1.747924 CTCGCATCTTCTGTCCTGAGA 59.252 52.381 0.00 0.00 0.00 3.27
1304 1379 7.626028 GCATCTTCTGTCCTGAGATTTTTCTTC 60.626 40.741 0.00 0.00 0.00 2.87
1336 1411 3.157087 AGTGCCCAAGATTCGATTGTTT 58.843 40.909 0.00 0.00 0.00 2.83
1349 1424 1.118356 ATTGTTTTTCCCCAGCCGCA 61.118 50.000 0.00 0.00 0.00 5.69
1364 1439 0.238817 CCGCAATTTTTCCGACCGAA 59.761 50.000 0.00 0.00 0.00 4.30
1388 1463 2.683061 CTTCGAATTCGTGCGAATCAC 58.317 47.619 25.93 14.30 44.34 3.06
1396 1471 3.108521 GTGCGAATCACGACTCTGT 57.891 52.632 0.00 0.00 45.77 3.41
1449 1524 1.131126 GACATGACATGTTTGGCTCGG 59.869 52.381 21.66 0.00 45.03 4.63
1511 1586 2.362503 TGATCGAGGACCCGCACT 60.363 61.111 0.00 0.00 0.00 4.40
1609 1684 1.313812 CCGTCGTCTCCCTGTAAGCT 61.314 60.000 0.00 0.00 0.00 3.74
1610 1685 0.099082 CGTCGTCTCCCTGTAAGCTC 59.901 60.000 0.00 0.00 0.00 4.09
1611 1686 0.456628 GTCGTCTCCCTGTAAGCTCC 59.543 60.000 0.00 0.00 0.00 4.70
1612 1687 0.683504 TCGTCTCCCTGTAAGCTCCC 60.684 60.000 0.00 0.00 0.00 4.30
1613 1688 1.677637 CGTCTCCCTGTAAGCTCCCC 61.678 65.000 0.00 0.00 0.00 4.81
1614 1689 1.003051 TCTCCCTGTAAGCTCCCCC 59.997 63.158 0.00 0.00 0.00 5.40
1659 1734 1.408340 GCTCTGCTCTGCTCATCACTA 59.592 52.381 0.00 0.00 0.00 2.74
1701 1792 1.787847 CTCAACGCGCTTAGGTTGG 59.212 57.895 20.75 11.11 42.81 3.77
1702 1793 1.635663 CTCAACGCGCTTAGGTTGGG 61.636 60.000 20.75 16.11 42.81 4.12
1703 1794 2.359478 AACGCGCTTAGGTTGGGG 60.359 61.111 5.73 0.00 0.00 4.96
1704 1795 3.912745 AACGCGCTTAGGTTGGGGG 62.913 63.158 5.73 0.00 36.62 5.40
1705 1796 4.404098 CGCGCTTAGGTTGGGGGT 62.404 66.667 5.56 0.00 0.00 4.95
1706 1797 2.992164 GCGCTTAGGTTGGGGGTA 59.008 61.111 0.00 0.00 0.00 3.69
1707 1798 1.300634 GCGCTTAGGTTGGGGGTAA 59.699 57.895 0.00 0.00 0.00 2.85
1708 1799 0.322726 GCGCTTAGGTTGGGGGTAAA 60.323 55.000 0.00 0.00 0.00 2.01
1709 1800 1.887522 GCGCTTAGGTTGGGGGTAAAA 60.888 52.381 0.00 0.00 0.00 1.52
1710 1801 2.089201 CGCTTAGGTTGGGGGTAAAAG 58.911 52.381 0.00 0.00 0.00 2.27
1711 1802 1.822990 GCTTAGGTTGGGGGTAAAAGC 59.177 52.381 0.00 0.00 0.00 3.51
1712 1803 2.453521 CTTAGGTTGGGGGTAAAAGCC 58.546 52.381 0.00 0.00 34.31 4.35
1713 1804 1.763018 TAGGTTGGGGGTAAAAGCCT 58.237 50.000 0.00 0.00 35.71 4.58
1714 1805 1.763018 AGGTTGGGGGTAAAAGCCTA 58.237 50.000 0.00 0.00 35.71 3.93
1715 1806 2.075383 AGGTTGGGGGTAAAAGCCTAA 58.925 47.619 0.00 0.00 35.71 2.69
1716 1807 2.451659 AGGTTGGGGGTAAAAGCCTAAA 59.548 45.455 0.00 0.00 35.71 1.85
1717 1808 3.116668 AGGTTGGGGGTAAAAGCCTAAAA 60.117 43.478 0.00 0.00 35.71 1.52
1718 1809 3.259876 GGTTGGGGGTAAAAGCCTAAAAG 59.740 47.826 0.00 0.00 35.71 2.27
1719 1810 4.154176 GTTGGGGGTAAAAGCCTAAAAGA 58.846 43.478 0.00 0.00 35.71 2.52
1756 1847 8.196103 ACTACGATTTGTACTTTAATCTCCTCC 58.804 37.037 0.00 0.00 0.00 4.30
1763 1854 4.846168 ACTTTAATCTCCTCCCCAGAAC 57.154 45.455 0.00 0.00 0.00 3.01
1773 1865 0.841289 TCCCCAGAACGGAACAAAGT 59.159 50.000 0.00 0.00 36.56 2.66
1794 1886 0.654683 GATTCGGTCAGCTGTGATGC 59.345 55.000 14.67 0.34 34.36 3.91
1806 1898 2.335752 CTGTGATGCGGATAGATGCTC 58.664 52.381 0.00 0.00 0.00 4.26
1809 1901 0.244994 GATGCGGATAGATGCTCGGT 59.755 55.000 0.00 0.00 0.00 4.69
1810 1902 0.037882 ATGCGGATAGATGCTCGGTG 60.038 55.000 0.00 0.00 0.00 4.94
1811 1903 1.106944 TGCGGATAGATGCTCGGTGA 61.107 55.000 0.00 0.00 0.00 4.02
1812 1904 0.244994 GCGGATAGATGCTCGGTGAT 59.755 55.000 0.00 0.00 0.00 3.06
1813 1905 1.988063 CGGATAGATGCTCGGTGATG 58.012 55.000 0.00 0.00 0.00 3.07
1814 1906 1.270826 CGGATAGATGCTCGGTGATGT 59.729 52.381 0.00 0.00 0.00 3.06
1815 1907 2.681706 GGATAGATGCTCGGTGATGTG 58.318 52.381 0.00 0.00 0.00 3.21
1816 1908 2.611473 GGATAGATGCTCGGTGATGTGG 60.611 54.545 0.00 0.00 0.00 4.17
1817 1909 0.752658 TAGATGCTCGGTGATGTGGG 59.247 55.000 0.00 0.00 0.00 4.61
1818 1910 0.977627 AGATGCTCGGTGATGTGGGA 60.978 55.000 0.00 0.00 0.00 4.37
1819 1911 0.107703 GATGCTCGGTGATGTGGGAA 60.108 55.000 0.00 0.00 0.00 3.97
1820 1912 0.327924 ATGCTCGGTGATGTGGGAAA 59.672 50.000 0.00 0.00 0.00 3.13
1889 1982 4.818642 CAGTCAGTCAGTCAGTCATTCAT 58.181 43.478 0.00 0.00 0.00 2.57
1894 1987 4.093115 CAGTCAGTCAGTCATTCATTCAGC 59.907 45.833 0.00 0.00 0.00 4.26
1968 2066 0.806102 ATCAGTCGAAATCACGCCGG 60.806 55.000 0.00 0.00 0.00 6.13
1990 2088 0.454600 TGAGACCGCTGATTACGACC 59.545 55.000 0.00 0.00 0.00 4.79
2017 2115 4.501071 GATGATGAATTTGGCTTTGTGCT 58.499 39.130 0.00 0.00 42.39 4.40
2106 2204 0.098376 GCAAGAGCTGTATGTGCTGC 59.902 55.000 0.00 0.00 41.30 5.25
2111 2209 1.664659 GAGCTGTATGTGCTGCTTCAG 59.335 52.381 0.00 3.85 42.37 3.02
2113 2211 1.396301 GCTGTATGTGCTGCTTCAGTC 59.604 52.381 0.00 0.00 33.43 3.51
2115 2213 3.332919 CTGTATGTGCTGCTTCAGTCTT 58.667 45.455 0.00 0.00 33.43 3.01
2116 2214 3.329386 TGTATGTGCTGCTTCAGTCTTC 58.671 45.455 0.00 0.00 33.43 2.87
2117 2215 2.556144 ATGTGCTGCTTCAGTCTTCA 57.444 45.000 0.00 0.00 33.43 3.02
2118 2216 2.556144 TGTGCTGCTTCAGTCTTCAT 57.444 45.000 0.00 0.00 33.43 2.57
2120 2218 2.551032 TGTGCTGCTTCAGTCTTCATTG 59.449 45.455 0.00 0.00 33.43 2.82
2122 2220 2.551032 TGCTGCTTCAGTCTTCATTGTG 59.449 45.455 0.00 0.00 33.43 3.33
2123 2221 2.551459 GCTGCTTCAGTCTTCATTGTGT 59.449 45.455 0.00 0.00 33.43 3.72
2126 2224 4.454678 TGCTTCAGTCTTCATTGTGTCTT 58.545 39.130 0.00 0.00 0.00 3.01
2127 2225 4.512944 TGCTTCAGTCTTCATTGTGTCTTC 59.487 41.667 0.00 0.00 0.00 2.87
2128 2226 4.512944 GCTTCAGTCTTCATTGTGTCTTCA 59.487 41.667 0.00 0.00 0.00 3.02
2130 2228 4.060900 TCAGTCTTCATTGTGTCTTCAGC 58.939 43.478 0.00 0.00 0.00 4.26
2132 2230 4.063689 AGTCTTCATTGTGTCTTCAGCTG 58.936 43.478 7.63 7.63 0.00 4.24
2133 2231 3.812053 GTCTTCATTGTGTCTTCAGCTGT 59.188 43.478 14.67 0.00 0.00 4.40
2134 2232 3.811497 TCTTCATTGTGTCTTCAGCTGTG 59.189 43.478 14.67 8.33 0.00 3.66
2135 2233 1.875514 TCATTGTGTCTTCAGCTGTGC 59.124 47.619 14.67 3.30 0.00 4.57
2136 2234 1.605232 CATTGTGTCTTCAGCTGTGCA 59.395 47.619 14.67 5.93 0.00 4.57
2138 2236 0.178767 TGTGTCTTCAGCTGTGCACT 59.821 50.000 19.41 0.00 0.00 4.40
2139 2237 0.585357 GTGTCTTCAGCTGTGCACTG 59.415 55.000 19.41 18.94 36.44 3.66
2140 2238 0.465287 TGTCTTCAGCTGTGCACTGA 59.535 50.000 25.94 14.94 42.30 3.41
2143 2241 3.011085 TTCAGCTGTGCACTGAAGG 57.989 52.632 25.94 14.01 46.46 3.46
2146 2244 3.368571 GCTGTGCACTGAAGGGCC 61.369 66.667 25.94 0.00 0.00 5.80
2154 2258 0.895559 CACTGAAGGGCCTGGTTTCC 60.896 60.000 6.92 0.00 0.00 3.13
2221 2325 2.892425 GCACGATCCCGAAGCAGG 60.892 66.667 0.00 0.00 39.05 4.85
2223 2327 1.813859 CACGATCCCGAAGCAGGTA 59.186 57.895 0.00 0.00 39.50 3.08
2337 2441 6.080648 AGCGTAATGTAAGATACCGATTGA 57.919 37.500 0.00 0.00 0.00 2.57
2394 2498 6.348868 GCTGCTTCTTTGCTACTCAAACTAAT 60.349 38.462 0.00 0.00 39.58 1.73
2458 2564 1.555992 CTAACCGGGAACATACCACCA 59.444 52.381 6.32 0.00 0.00 4.17
2584 2690 1.070105 CGGGTCGGTGACTTTTCCA 59.930 57.895 0.00 0.00 32.47 3.53
2679 2800 9.865152 TGATGGAAAATTGGATATGATGTAAGA 57.135 29.630 0.00 0.00 0.00 2.10
2682 2803 9.699410 TGGAAAATTGGATATGATGTAAGAACT 57.301 29.630 0.00 0.00 0.00 3.01
2699 2845 9.621629 TGTAAGAACTAAGAAGGTCATGAAAAA 57.378 29.630 0.00 0.00 42.38 1.94
2833 2979 6.663093 TGGTAATACTTGCTGAATTTGTCCAT 59.337 34.615 0.00 0.00 0.00 3.41
3074 3226 8.934023 TTTGTTTGAAGTATCTTCCAAGGTAT 57.066 30.769 6.98 0.00 0.00 2.73
3090 3246 6.378848 TCCAAGGTATTATTACAAAAGGCACC 59.621 38.462 0.00 0.00 0.00 5.01
3129 3285 7.252612 TCAGTTAGAAGTCCATCCATTTACA 57.747 36.000 0.00 0.00 0.00 2.41
3147 3303 1.352352 ACATGGCTAGTTTGCAGGTCT 59.648 47.619 0.00 0.00 34.04 3.85
3177 3333 0.107459 GGAACTGCCTCCAGGATGAC 60.107 60.000 0.00 0.00 43.53 3.06
3224 3380 5.527951 TCAAATTTGTGCAAGTATGTGACC 58.472 37.500 17.47 0.00 0.00 4.02
3225 3381 4.519540 AATTTGTGCAAGTATGTGACCC 57.480 40.909 0.00 0.00 0.00 4.46
3238 3394 0.391793 GTGACCCAGCCTCTACAAGC 60.392 60.000 0.00 0.00 0.00 4.01
3246 3403 2.996621 CAGCCTCTACAAGCTACACAAC 59.003 50.000 0.00 0.00 37.18 3.32
3264 3421 7.421530 ACACAACTATTGCAGTGTTAACTAG 57.578 36.000 7.22 1.05 42.06 2.57
3268 3425 9.284968 ACAACTATTGCAGTGTTAACTAGAAAT 57.715 29.630 7.22 5.72 37.63 2.17
3274 3431 7.364522 TGCAGTGTTAACTAGAAATGATGAC 57.635 36.000 7.22 0.00 33.79 3.06
3317 3474 5.647589 CATGGACATTGGAATTCAACTCAG 58.352 41.667 7.93 0.00 38.31 3.35
3334 3491 6.433404 TCAACTCAGTTAATCCGAGAAGTACT 59.567 38.462 0.00 0.00 0.00 2.73
3502 4041 9.747898 CCACCAATATGGGTTATAGCTATTTAA 57.252 33.333 12.39 0.00 43.37 1.52
3535 4074 2.093973 CACTTAGTAGTGGCCTGAGGTG 60.094 54.545 3.32 0.00 46.52 4.00
3537 4076 2.615986 TAGTAGTGGCCTGAGGTGAA 57.384 50.000 3.32 0.00 0.00 3.18
3577 4118 7.412020 CGACTGAAATCTACTCTTGTTTTAGGC 60.412 40.741 0.00 0.00 0.00 3.93
3714 4255 2.286950 TGCTTGTTTTCGTGATCACTGC 60.287 45.455 22.95 13.32 0.00 4.40
3887 4433 2.728690 TGCCAATGTGTTCATGCTTC 57.271 45.000 0.00 0.00 34.19 3.86
3889 4435 2.629137 TGCCAATGTGTTCATGCTTCTT 59.371 40.909 0.00 0.00 34.19 2.52
4105 4655 7.329588 ACTCTTTTACCAAAACAAGGTAGTG 57.670 36.000 0.00 0.00 42.22 2.74
4106 4656 6.320418 ACTCTTTTACCAAAACAAGGTAGTGG 59.680 38.462 0.00 0.00 42.22 4.00
4117 4667 7.745620 AAACAAGGTAGTGGATTTGTCTAAG 57.254 36.000 0.00 0.00 32.97 2.18
4124 4674 3.941483 AGTGGATTTGTCTAAGATTGCGG 59.059 43.478 0.00 0.00 0.00 5.69
4144 4697 5.106712 TGCGGCTCAGAAACACTTTTTATAG 60.107 40.000 0.00 0.00 0.00 1.31
4147 4705 7.674240 GCGGCTCAGAAACACTTTTTATAGTAG 60.674 40.741 0.00 0.00 0.00 2.57
4149 4707 7.334671 GGCTCAGAAACACTTTTTATAGTAGCT 59.665 37.037 0.00 0.00 0.00 3.32
4150 4708 8.384365 GCTCAGAAACACTTTTTATAGTAGCTC 58.616 37.037 0.00 0.00 0.00 4.09
4349 4918 8.623574 TATCTCTTCGATTTCGTTACGACGGG 62.624 46.154 7.06 5.56 40.31 5.28
4581 5154 2.643551 CCCCAAGGTACTGTATGCTTG 58.356 52.381 0.00 0.00 40.86 4.01
4583 5156 2.238646 CCCAAGGTACTGTATGCTTGGA 59.761 50.000 21.23 0.00 42.64 3.53
4594 5167 5.415701 ACTGTATGCTTGGATTTTACCTGTG 59.584 40.000 0.00 0.00 0.00 3.66
4634 5209 4.579869 TGGAGCTTACCTTTCAGATGAAC 58.420 43.478 0.00 0.00 33.13 3.18
4644 5219 4.689812 CCTTTCAGATGAACACAGTCTCTG 59.310 45.833 0.00 0.00 35.71 3.35
4943 5524 4.640805 TTGTTACTCAAAGATCGCGTTC 57.359 40.909 5.77 7.71 32.64 3.95
4963 5547 5.164061 CGTTCAAGTAAAATGAAATGCTGGC 60.164 40.000 0.00 0.00 38.44 4.85
4965 5549 5.229423 TCAAGTAAAATGAAATGCTGGCAC 58.771 37.500 0.00 0.00 0.00 5.01
4980 5564 4.891168 TGCTGGCACAATCTATCATTTCAT 59.109 37.500 0.00 0.00 38.70 2.57
5060 5644 1.293924 CTCTACATTTCTGCAGGCCG 58.706 55.000 15.13 2.81 0.00 6.13
5080 5664 0.835971 TCAAGTACCTCCAGCAGCCA 60.836 55.000 0.00 0.00 0.00 4.75
5355 5952 5.530519 TTCGTCAATTGCTAACACTGATC 57.469 39.130 0.00 0.00 0.00 2.92
5362 5959 3.124578 TGCTAACACTGATCTGTTGCA 57.875 42.857 9.89 12.79 36.60 4.08
5363 5960 2.807967 TGCTAACACTGATCTGTTGCAC 59.192 45.455 9.89 1.76 35.31 4.57
5367 5964 2.029288 ACTGATCTGTTGCACGCCG 61.029 57.895 0.00 0.00 0.00 6.46
5368 5965 3.372676 CTGATCTGTTGCACGCCGC 62.373 63.158 0.00 0.00 42.89 6.53
5370 5967 4.704833 ATCTGTTGCACGCCGCCT 62.705 61.111 0.00 0.00 41.33 5.52
5374 5971 4.090057 GTTGCACGCCGCCTTCTC 62.090 66.667 0.00 0.00 41.33 2.87
5375 5972 4.314440 TTGCACGCCGCCTTCTCT 62.314 61.111 0.00 0.00 41.33 3.10
5385 5982 1.748500 GCCTTCTCTGCCTCCTTGC 60.749 63.158 0.00 0.00 0.00 4.01
5386 5983 1.077858 CCTTCTCTGCCTCCTTGCC 60.078 63.158 0.00 0.00 0.00 4.52
5387 5984 1.560866 CCTTCTCTGCCTCCTTGCCT 61.561 60.000 0.00 0.00 0.00 4.75
5388 5985 0.107752 CTTCTCTGCCTCCTTGCCTC 60.108 60.000 0.00 0.00 0.00 4.70
5389 5986 0.546267 TTCTCTGCCTCCTTGCCTCT 60.546 55.000 0.00 0.00 0.00 3.69
5390 5987 0.336392 TCTCTGCCTCCTTGCCTCTA 59.664 55.000 0.00 0.00 0.00 2.43
5392 5989 0.041833 TCTGCCTCCTTGCCTCTACT 59.958 55.000 0.00 0.00 0.00 2.57
5393 5990 0.908198 CTGCCTCCTTGCCTCTACTT 59.092 55.000 0.00 0.00 0.00 2.24
5394 5991 0.615331 TGCCTCCTTGCCTCTACTTG 59.385 55.000 0.00 0.00 0.00 3.16
5395 5992 0.615850 GCCTCCTTGCCTCTACTTGT 59.384 55.000 0.00 0.00 0.00 3.16
5396 5993 1.831736 GCCTCCTTGCCTCTACTTGTA 59.168 52.381 0.00 0.00 0.00 2.41
5397 5994 2.418884 GCCTCCTTGCCTCTACTTGTAC 60.419 54.545 0.00 0.00 0.00 2.90
5399 5996 3.131400 CCTCCTTGCCTCTACTTGTACTC 59.869 52.174 0.00 0.00 0.00 2.59
5401 5998 2.168728 CCTTGCCTCTACTTGTACTCCC 59.831 54.545 0.00 0.00 0.00 4.30
5402 5999 2.921834 TGCCTCTACTTGTACTCCCT 57.078 50.000 0.00 0.00 0.00 4.20
5405 6002 2.691011 GCCTCTACTTGTACTCCCTCTG 59.309 54.545 0.00 0.00 0.00 3.35
5406 6003 3.878527 GCCTCTACTTGTACTCCCTCTGT 60.879 52.174 0.00 0.00 0.00 3.41
5407 6004 4.628227 GCCTCTACTTGTACTCCCTCTGTA 60.628 50.000 0.00 0.00 0.00 2.74
5408 6005 5.507637 CCTCTACTTGTACTCCCTCTGTAA 58.492 45.833 0.00 0.00 0.00 2.41
5409 6006 5.950549 CCTCTACTTGTACTCCCTCTGTAAA 59.049 44.000 0.00 0.00 0.00 2.01
5410 6007 6.608002 CCTCTACTTGTACTCCCTCTGTAAAT 59.392 42.308 0.00 0.00 0.00 1.40
5411 6008 7.778853 CCTCTACTTGTACTCCCTCTGTAAATA 59.221 40.741 0.00 0.00 0.00 1.40
5412 6009 9.186837 CTCTACTTGTACTCCCTCTGTAAATAA 57.813 37.037 0.00 0.00 0.00 1.40
5413 6010 9.537852 TCTACTTGTACTCCCTCTGTAAATAAA 57.462 33.333 0.00 0.00 0.00 1.40
5423 6020 9.360093 CTCCCTCTGTAAATAAATATAAGAGCG 57.640 37.037 0.00 0.00 0.00 5.03
5424 6021 8.867097 TCCCTCTGTAAATAAATATAAGAGCGT 58.133 33.333 0.00 0.00 0.00 5.07
5425 6022 9.490379 CCCTCTGTAAATAAATATAAGAGCGTT 57.510 33.333 0.00 0.00 0.00 4.84
5439 6036 7.995463 ATAAGAGCGTTTAGATCACTTCTTC 57.005 36.000 0.00 0.00 37.82 2.87
5440 6037 5.392767 AGAGCGTTTAGATCACTTCTTCA 57.607 39.130 0.00 0.00 37.82 3.02
5441 6038 5.406649 AGAGCGTTTAGATCACTTCTTCAG 58.593 41.667 0.00 0.00 37.82 3.02
5442 6039 5.047660 AGAGCGTTTAGATCACTTCTTCAGT 60.048 40.000 0.00 0.00 37.82 3.41
5452 6049 2.600731 ACTTCTTCAGTGATCGAAGCG 58.399 47.619 22.70 9.79 39.80 4.68
5453 6050 1.923204 CTTCTTCAGTGATCGAAGCGG 59.077 52.381 15.55 0.36 39.80 5.52
5454 6051 0.888619 TCTTCAGTGATCGAAGCGGT 59.111 50.000 0.00 0.00 39.80 5.68
5455 6052 1.135373 TCTTCAGTGATCGAAGCGGTC 60.135 52.381 0.00 0.00 39.80 4.79
5456 6053 0.888619 TTCAGTGATCGAAGCGGTCT 59.111 50.000 0.00 0.00 37.91 3.85
5457 6054 0.888619 TCAGTGATCGAAGCGGTCTT 59.111 50.000 1.62 0.00 37.91 3.01
5458 6055 2.089201 TCAGTGATCGAAGCGGTCTTA 58.911 47.619 1.62 0.00 37.91 2.10
5459 6056 2.688446 TCAGTGATCGAAGCGGTCTTAT 59.312 45.455 1.62 0.00 37.91 1.73
5460 6057 3.881089 TCAGTGATCGAAGCGGTCTTATA 59.119 43.478 1.62 0.00 37.91 0.98
5461 6058 4.519350 TCAGTGATCGAAGCGGTCTTATAT 59.481 41.667 1.62 0.00 37.91 0.86
5462 6059 5.009710 TCAGTGATCGAAGCGGTCTTATATT 59.990 40.000 1.62 0.00 37.91 1.28
5463 6060 5.692204 CAGTGATCGAAGCGGTCTTATATTT 59.308 40.000 1.62 0.00 37.91 1.40
5464 6061 5.921408 AGTGATCGAAGCGGTCTTATATTTC 59.079 40.000 1.62 0.00 37.91 2.17
5465 6062 5.921408 GTGATCGAAGCGGTCTTATATTTCT 59.079 40.000 1.62 0.00 37.91 2.52
5466 6063 6.421202 GTGATCGAAGCGGTCTTATATTTCTT 59.579 38.462 1.62 0.00 37.91 2.52
5467 6064 6.984474 TGATCGAAGCGGTCTTATATTTCTTT 59.016 34.615 1.62 0.00 37.91 2.52
5468 6065 8.139350 TGATCGAAGCGGTCTTATATTTCTTTA 58.861 33.333 1.62 0.00 37.91 1.85
5469 6066 9.141400 GATCGAAGCGGTCTTATATTTCTTTAT 57.859 33.333 0.00 0.00 33.82 1.40
5471 6068 9.622004 TCGAAGCGGTCTTATATTTCTTTATAG 57.378 33.333 0.00 0.00 31.48 1.31
5472 6069 9.622004 CGAAGCGGTCTTATATTTCTTTATAGA 57.378 33.333 0.00 0.00 31.48 1.98
5474 6071 9.930693 AAGCGGTCTTATATTTCTTTATAGAGG 57.069 33.333 0.00 0.00 0.00 3.69
5475 6072 8.532819 AGCGGTCTTATATTTCTTTATAGAGGG 58.467 37.037 0.00 0.00 0.00 4.30
5476 6073 8.529476 GCGGTCTTATATTTCTTTATAGAGGGA 58.471 37.037 0.00 0.00 0.00 4.20
5495 6092 3.064931 GGAGTACAACGCTTGCTAAAGT 58.935 45.455 0.00 0.00 35.69 2.66
5496 6093 3.123116 GGAGTACAACGCTTGCTAAAGTC 59.877 47.826 0.00 0.00 35.69 3.01
5499 6096 0.865769 CAACGCTTGCTAAAGTCGGT 59.134 50.000 0.00 0.00 37.30 4.69
5505 6102 0.394938 TTGCTAAAGTCGGTGAGCCA 59.605 50.000 0.00 0.00 33.87 4.75
5506 6103 0.037326 TGCTAAAGTCGGTGAGCCAG 60.037 55.000 0.00 0.00 33.87 4.85
5507 6104 0.037232 GCTAAAGTCGGTGAGCCAGT 60.037 55.000 0.00 0.00 34.09 4.00
5508 6105 1.714794 CTAAAGTCGGTGAGCCAGTG 58.285 55.000 0.00 0.00 34.09 3.66
5509 6106 0.320374 TAAAGTCGGTGAGCCAGTGG 59.680 55.000 4.20 4.20 34.09 4.00
5510 6107 2.397413 AAAGTCGGTGAGCCAGTGGG 62.397 60.000 12.15 0.00 34.09 4.61
5521 6118 4.002797 CAGTGGGCTGGGTTTAGC 57.997 61.111 0.00 0.00 42.94 3.09
5522 6119 1.380302 CAGTGGGCTGGGTTTAGCT 59.620 57.895 0.00 0.00 43.22 3.32
5523 6120 0.251341 CAGTGGGCTGGGTTTAGCTT 60.251 55.000 0.00 0.00 43.22 3.74
5524 6121 0.251341 AGTGGGCTGGGTTTAGCTTG 60.251 55.000 0.00 0.00 43.22 4.01
5525 6122 1.076549 TGGGCTGGGTTTAGCTTGG 59.923 57.895 0.00 0.00 43.22 3.61
5526 6123 1.382629 GGGCTGGGTTTAGCTTGGA 59.617 57.895 0.00 0.00 43.22 3.53
5527 6124 0.033109 GGGCTGGGTTTAGCTTGGAT 60.033 55.000 0.00 0.00 43.22 3.41
5528 6125 1.619704 GGGCTGGGTTTAGCTTGGATT 60.620 52.381 0.00 0.00 43.22 3.01
5529 6126 1.751351 GGCTGGGTTTAGCTTGGATTC 59.249 52.381 0.00 0.00 43.22 2.52
5530 6127 2.621668 GGCTGGGTTTAGCTTGGATTCT 60.622 50.000 0.00 0.00 43.22 2.40
5531 6128 2.685388 GCTGGGTTTAGCTTGGATTCTC 59.315 50.000 0.00 0.00 40.52 2.87
5532 6129 3.623453 GCTGGGTTTAGCTTGGATTCTCT 60.623 47.826 0.00 0.00 40.52 3.10
5533 6130 3.944015 CTGGGTTTAGCTTGGATTCTCTG 59.056 47.826 0.00 0.00 0.00 3.35
5534 6131 3.587061 TGGGTTTAGCTTGGATTCTCTGA 59.413 43.478 0.00 0.00 0.00 3.27
5535 6132 4.228210 TGGGTTTAGCTTGGATTCTCTGAT 59.772 41.667 0.00 0.00 0.00 2.90
5536 6133 5.428457 TGGGTTTAGCTTGGATTCTCTGATA 59.572 40.000 0.00 0.00 0.00 2.15
5537 6134 5.760743 GGGTTTAGCTTGGATTCTCTGATAC 59.239 44.000 0.00 0.00 0.00 2.24
5538 6135 5.760743 GGTTTAGCTTGGATTCTCTGATACC 59.239 44.000 0.00 0.00 0.00 2.73
5539 6136 3.742433 AGCTTGGATTCTCTGATACCG 57.258 47.619 0.00 0.00 0.00 4.02
5540 6137 2.139118 GCTTGGATTCTCTGATACCGC 58.861 52.381 0.00 0.00 0.00 5.68
5541 6138 2.224161 GCTTGGATTCTCTGATACCGCT 60.224 50.000 0.00 0.00 0.00 5.52
5542 6139 3.742640 GCTTGGATTCTCTGATACCGCTT 60.743 47.826 0.00 0.00 0.00 4.68
5543 6140 3.459232 TGGATTCTCTGATACCGCTTG 57.541 47.619 0.00 0.00 0.00 4.01
5544 6141 2.139118 GGATTCTCTGATACCGCTTGC 58.861 52.381 0.00 0.00 0.00 4.01
5545 6142 2.139118 GATTCTCTGATACCGCTTGCC 58.861 52.381 0.00 0.00 0.00 4.52
5546 6143 0.178068 TTCTCTGATACCGCTTGCCC 59.822 55.000 0.00 0.00 0.00 5.36
5605 6203 2.204034 TCAGTGTGGGGGCTCAGA 59.796 61.111 0.00 0.00 0.00 3.27
5648 6246 4.808558 TCTAAAATGATGTTGCACCTTGC 58.191 39.130 0.00 0.00 45.29 4.01
5649 6247 2.460757 AAATGATGTTGCACCTTGCC 57.539 45.000 0.00 0.00 44.23 4.52
5650 6248 0.609662 AATGATGTTGCACCTTGCCC 59.390 50.000 0.00 0.00 44.23 5.36
5651 6249 1.259840 ATGATGTTGCACCTTGCCCC 61.260 55.000 0.00 0.00 44.23 5.80
5665 6264 1.872773 TGCCCCAACCTTGTTTTTCT 58.127 45.000 0.00 0.00 0.00 2.52
5670 6269 4.739436 GCCCCAACCTTGTTTTTCTGTTAG 60.739 45.833 0.00 0.00 0.00 2.34
5677 6280 5.359860 ACCTTGTTTTTCTGTTAGGAGTTGG 59.640 40.000 0.00 0.00 0.00 3.77
5679 6282 5.118729 TGTTTTTCTGTTAGGAGTTGGGA 57.881 39.130 0.00 0.00 0.00 4.37
5682 6285 6.040391 TGTTTTTCTGTTAGGAGTTGGGAATG 59.960 38.462 0.00 0.00 0.00 2.67
5686 6289 4.080356 TCTGTTAGGAGTTGGGAATGGATG 60.080 45.833 0.00 0.00 0.00 3.51
5687 6290 2.952310 GTTAGGAGTTGGGAATGGATGC 59.048 50.000 0.00 0.00 0.00 3.91
5697 6301 2.433239 GGGAATGGATGCATGCTTTTCT 59.567 45.455 20.33 0.00 0.00 2.52
5707 6311 6.293516 GGATGCATGCTTTTCTCTAGATCTTG 60.294 42.308 20.33 0.00 0.00 3.02
5725 6329 0.602638 TGTGCGATGGTCTGTTGGAC 60.603 55.000 0.00 0.00 43.79 4.02
5732 6336 4.693532 GTCTGTTGGACCGATGCA 57.306 55.556 0.00 0.00 38.93 3.96
5733 6337 3.159298 GTCTGTTGGACCGATGCAT 57.841 52.632 0.00 0.00 38.93 3.96
5778 6382 0.404426 GGTTTTACCCCAGCCTCTGT 59.596 55.000 0.00 0.00 30.04 3.41
5948 6553 5.547666 ACATGCCTATCCTATTACATGACCA 59.452 40.000 0.00 0.00 38.55 4.02
5971 6576 4.219725 ACCATCCAAACCGGTTGAAAATAG 59.780 41.667 23.08 10.04 39.87 1.73
5974 6579 2.591133 CAAACCGGTTGAAAATAGCCG 58.409 47.619 23.08 0.00 43.06 5.52
6211 6816 3.565307 GAATCAACCCCATCAAGCCATA 58.435 45.455 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.673454 GAACAAACTTATACTTCACCGAAATTT 57.327 29.630 0.00 0.00 0.00 1.82
44 45 7.270779 TCATGAACACAAATTTGATTGGAACA 58.729 30.769 24.64 13.68 34.56 3.18
65 66 6.715464 AGTAAAAACGCTTTCGGATATCATG 58.285 36.000 4.83 0.00 40.69 3.07
91 92 3.798202 AGCCTATCTCCAAAACTTAGCG 58.202 45.455 0.00 0.00 0.00 4.26
168 169 7.201821 GCCGATCCCCTAAAAATAATGGATATG 60.202 40.741 0.00 0.00 32.91 1.78
176 178 5.842328 TCTCTAGCCGATCCCCTAAAAATAA 59.158 40.000 0.00 0.00 0.00 1.40
226 235 0.462375 ATTAGATACGTGTGCCCGCA 59.538 50.000 0.00 0.00 0.00 5.69
248 257 5.620206 TCAGTCTTTTAAAGGTGCTCATGA 58.380 37.500 4.77 0.00 0.00 3.07
283 292 5.357878 GCTATGGTGAATTTGTGGATCTCAA 59.642 40.000 0.00 0.00 0.00 3.02
284 293 4.883585 GCTATGGTGAATTTGTGGATCTCA 59.116 41.667 0.00 0.00 0.00 3.27
285 294 5.128919 AGCTATGGTGAATTTGTGGATCTC 58.871 41.667 0.00 0.00 0.00 2.75
288 297 4.210331 GGAGCTATGGTGAATTTGTGGAT 58.790 43.478 0.00 0.00 0.00 3.41
289 298 3.620488 GGAGCTATGGTGAATTTGTGGA 58.380 45.455 0.00 0.00 0.00 4.02
290 299 2.689983 GGGAGCTATGGTGAATTTGTGG 59.310 50.000 0.00 0.00 0.00 4.17
291 300 3.624777 AGGGAGCTATGGTGAATTTGTG 58.375 45.455 0.00 0.00 0.00 3.33
292 301 4.475016 ACTAGGGAGCTATGGTGAATTTGT 59.525 41.667 0.00 0.00 0.00 2.83
293 302 4.818546 CACTAGGGAGCTATGGTGAATTTG 59.181 45.833 4.18 0.00 0.00 2.32
294 303 4.475016 ACACTAGGGAGCTATGGTGAATTT 59.525 41.667 14.06 0.00 0.00 1.82
295 304 4.040755 ACACTAGGGAGCTATGGTGAATT 58.959 43.478 14.06 0.00 0.00 2.17
296 305 3.658725 ACACTAGGGAGCTATGGTGAAT 58.341 45.455 14.06 0.00 0.00 2.57
297 306 3.116096 ACACTAGGGAGCTATGGTGAA 57.884 47.619 14.06 0.00 0.00 3.18
305 314 3.704061 GAGAGATCAAACACTAGGGAGCT 59.296 47.826 0.00 0.00 0.00 4.09
307 316 4.952957 TGAGAGAGATCAAACACTAGGGAG 59.047 45.833 0.00 0.00 0.00 4.30
339 348 5.927819 TCCAGTTCCATTTCTTTTTGCATT 58.072 33.333 0.00 0.00 0.00 3.56
358 373 0.321919 CATGTGGTGTGGTCCTCCAG 60.322 60.000 0.00 0.00 45.24 3.86
403 418 2.224917 GGGGTAGGGTGTGATTTGTGAA 60.225 50.000 0.00 0.00 0.00 3.18
404 419 1.353022 GGGGTAGGGTGTGATTTGTGA 59.647 52.381 0.00 0.00 0.00 3.58
409 424 0.623617 GGGAGGGGTAGGGTGTGATT 60.624 60.000 0.00 0.00 0.00 2.57
410 425 1.004361 GGGAGGGGTAGGGTGTGAT 59.996 63.158 0.00 0.00 0.00 3.06
412 427 1.995626 CAGGGAGGGGTAGGGTGTG 60.996 68.421 0.00 0.00 0.00 3.82
415 430 1.160289 TCTTCAGGGAGGGGTAGGGT 61.160 60.000 0.00 0.00 0.00 4.34
420 436 1.152271 TCTTCTTCTTCAGGGAGGGGT 59.848 52.381 0.00 0.00 0.00 4.95
423 439 4.833478 TGAATCTTCTTCTTCAGGGAGG 57.167 45.455 0.00 0.00 0.00 4.30
454 485 5.126067 AGTTTAAATGTGTGTGCAGACTCT 58.874 37.500 15.76 0.00 0.00 3.24
489 520 5.744666 TGTTGGCACTCACTAGTTTAAAC 57.255 39.130 10.47 10.47 31.97 2.01
498 529 0.546122 TGGTCTTGTTGGCACTCACT 59.454 50.000 0.00 0.00 0.00 3.41
499 530 0.947244 CTGGTCTTGTTGGCACTCAC 59.053 55.000 0.00 0.00 0.00 3.51
500 531 0.546122 ACTGGTCTTGTTGGCACTCA 59.454 50.000 0.00 0.00 0.00 3.41
501 532 2.417719 CTACTGGTCTTGTTGGCACTC 58.582 52.381 0.00 0.00 0.00 3.51
524 562 1.194772 GTAAAGACTGCTTGCCGTGTC 59.805 52.381 0.00 0.00 33.79 3.67
542 580 8.375493 AGTATGTTGAGGAGGAGTAATTTGTA 57.625 34.615 0.00 0.00 0.00 2.41
561 599 5.970289 TCTTAGGGAGGATGATGAGTATGT 58.030 41.667 0.00 0.00 0.00 2.29
562 600 7.838696 AGTATCTTAGGGAGGATGATGAGTATG 59.161 40.741 0.00 0.00 0.00 2.39
563 601 7.838696 CAGTATCTTAGGGAGGATGATGAGTAT 59.161 40.741 0.00 0.00 0.00 2.12
564 602 7.178573 CAGTATCTTAGGGAGGATGATGAGTA 58.821 42.308 0.00 0.00 0.00 2.59
565 603 6.015918 CAGTATCTTAGGGAGGATGATGAGT 58.984 44.000 0.00 0.00 0.00 3.41
567 605 5.970289 ACAGTATCTTAGGGAGGATGATGA 58.030 41.667 0.00 0.00 0.00 2.92
568 606 5.186797 GGACAGTATCTTAGGGAGGATGATG 59.813 48.000 0.00 0.00 0.00 3.07
569 607 5.337788 GGACAGTATCTTAGGGAGGATGAT 58.662 45.833 0.00 0.00 0.00 2.45
570 608 4.449376 GGGACAGTATCTTAGGGAGGATGA 60.449 50.000 0.00 0.00 0.00 2.92
571 609 3.835395 GGGACAGTATCTTAGGGAGGATG 59.165 52.174 0.00 0.00 0.00 3.51
572 610 3.735442 AGGGACAGTATCTTAGGGAGGAT 59.265 47.826 0.00 0.00 0.00 3.24
583 621 3.579151 GTGGATTAGGGAGGGACAGTATC 59.421 52.174 0.00 0.00 0.00 2.24
609 647 8.404765 GTCAGTAGAGGAAATTAGTACTGGTAC 58.595 40.741 5.39 2.97 40.58 3.34
613 651 7.406031 TGGTCAGTAGAGGAAATTAGTACTG 57.594 40.000 5.39 0.00 41.24 2.74
709 747 2.735772 GCGATGGCAGAAGAGGGGA 61.736 63.158 0.00 0.00 39.62 4.81
711 749 2.203126 GGCGATGGCAGAAGAGGG 60.203 66.667 1.01 0.00 42.47 4.30
712 750 0.465097 AATGGCGATGGCAGAAGAGG 60.465 55.000 1.01 0.00 42.43 3.69
713 751 1.386533 AAATGGCGATGGCAGAAGAG 58.613 50.000 1.01 0.00 42.43 2.85
714 752 2.708216 TAAATGGCGATGGCAGAAGA 57.292 45.000 1.01 0.00 42.43 2.87
715 753 3.996150 AATAAATGGCGATGGCAGAAG 57.004 42.857 1.01 0.00 42.43 2.85
716 754 3.068024 GGAAATAAATGGCGATGGCAGAA 59.932 43.478 1.01 0.00 42.43 3.02
717 755 2.622942 GGAAATAAATGGCGATGGCAGA 59.377 45.455 1.01 0.00 42.43 4.26
746 784 4.851214 AGCGAGAGGGGAGGGAGC 62.851 72.222 0.00 0.00 0.00 4.70
751 789 2.560119 CGATCCAGCGAGAGGGGAG 61.560 68.421 0.00 0.00 33.47 4.30
752 790 2.519541 CGATCCAGCGAGAGGGGA 60.520 66.667 0.00 0.00 34.70 4.81
753 791 4.292178 GCGATCCAGCGAGAGGGG 62.292 72.222 0.00 0.00 0.00 4.79
754 792 4.292178 GGCGATCCAGCGAGAGGG 62.292 72.222 0.00 0.00 38.18 4.30
755 793 3.531207 TGGCGATCCAGCGAGAGG 61.531 66.667 0.00 0.00 37.47 3.69
769 807 1.168714 GGGAGTGAGAATGTTGTGGC 58.831 55.000 0.00 0.00 0.00 5.01
783 821 2.641746 CCAGAGGGAGGGAGGGAGT 61.642 68.421 0.00 0.00 35.59 3.85
801 839 1.532078 GGGGGACGAGGAGAGGATC 60.532 68.421 0.00 0.00 0.00 3.36
802 840 2.609920 GGGGGACGAGGAGAGGAT 59.390 66.667 0.00 0.00 0.00 3.24
818 857 0.034896 AAAGAGCGGTGTAGTGTGGG 59.965 55.000 0.00 0.00 0.00 4.61
910 961 4.400109 CTGTTGCTGCTGCTGCCG 62.400 66.667 25.44 7.92 40.48 5.69
913 964 4.400109 CCGCTGTTGCTGCTGCTG 62.400 66.667 17.00 0.77 40.48 4.41
952 1003 2.735772 GCAGGGAAGGGATCAGCGA 61.736 63.158 0.00 0.00 0.00 4.93
985 1036 1.341383 CCCCATGTTCCAAGCTAAGCT 60.341 52.381 0.00 0.00 42.56 3.74
1205 1275 2.758327 CGGAGGTGTGATCCCGGA 60.758 66.667 0.73 0.00 38.42 5.14
1206 1276 4.530857 GCGGAGGTGTGATCCCGG 62.531 72.222 7.75 0.00 42.02 5.73
1207 1277 2.907897 GAAGCGGAGGTGTGATCCCG 62.908 65.000 0.00 0.00 44.34 5.14
1208 1278 1.153349 GAAGCGGAGGTGTGATCCC 60.153 63.158 0.00 0.00 39.47 3.85
1209 1279 1.153349 GGAAGCGGAGGTGTGATCC 60.153 63.158 0.00 0.00 39.47 3.36
1210 1280 0.250513 AAGGAAGCGGAGGTGTGATC 59.749 55.000 0.00 0.00 39.47 2.92
1211 1281 0.250513 GAAGGAAGCGGAGGTGTGAT 59.749 55.000 0.00 0.00 39.47 3.06
1212 1282 1.671742 GAAGGAAGCGGAGGTGTGA 59.328 57.895 0.00 0.00 39.47 3.58
1214 1284 1.201429 ATGGAAGGAAGCGGAGGTGT 61.201 55.000 0.00 0.00 39.47 4.16
1215 1285 0.035056 AATGGAAGGAAGCGGAGGTG 60.035 55.000 0.00 0.00 39.47 4.00
1216 1286 0.698818 AAATGGAAGGAAGCGGAGGT 59.301 50.000 0.00 0.00 44.60 3.85
1225 1297 1.596496 GGAGGGAGGAAATGGAAGGA 58.404 55.000 0.00 0.00 0.00 3.36
1227 1299 1.213926 CTGGGAGGGAGGAAATGGAAG 59.786 57.143 0.00 0.00 0.00 3.46
1242 1315 1.894756 CGGCGGTTTGAAACTGGGA 60.895 57.895 17.70 0.00 38.23 4.37
1246 1320 0.393820 TAGGACGGCGGTTTGAAACT 59.606 50.000 13.24 0.00 0.00 2.66
1294 1368 5.511729 CACTAATTTCGCGGGAAGAAAAATC 59.488 40.000 14.94 0.00 40.44 2.17
1295 1369 5.399013 CACTAATTTCGCGGGAAGAAAAAT 58.601 37.500 14.94 2.88 40.44 1.82
1304 1379 1.309499 TTGGGCACTAATTTCGCGGG 61.309 55.000 6.13 0.00 0.00 6.13
1336 1411 0.761802 AAAAATTGCGGCTGGGGAAA 59.238 45.000 0.00 0.00 0.00 3.13
1349 1424 2.779506 AGCTCTTCGGTCGGAAAAATT 58.220 42.857 0.00 0.00 33.34 1.82
1364 1439 0.109272 TCGCACGAATTCGAAGCTCT 60.109 50.000 33.05 7.74 43.02 4.09
1440 1515 0.039617 CGCAAATCAACCGAGCCAAA 60.040 50.000 0.00 0.00 0.00 3.28
1449 1524 0.725784 CGACACTGCCGCAAATCAAC 60.726 55.000 0.00 0.00 0.00 3.18
1611 1686 1.786441 AGATCTAGAGGAGTGAGGGGG 59.214 57.143 0.00 0.00 0.00 5.40
1612 1687 2.445145 TGAGATCTAGAGGAGTGAGGGG 59.555 54.545 0.00 0.00 0.00 4.79
1613 1688 3.138283 AGTGAGATCTAGAGGAGTGAGGG 59.862 52.174 0.00 0.00 0.00 4.30
1614 1689 4.141505 TGAGTGAGATCTAGAGGAGTGAGG 60.142 50.000 0.00 0.00 0.00 3.86
1615 1690 5.034852 TGAGTGAGATCTAGAGGAGTGAG 57.965 47.826 0.00 0.00 0.00 3.51
1616 1691 5.436175 CTTGAGTGAGATCTAGAGGAGTGA 58.564 45.833 0.00 0.00 0.00 3.41
1617 1692 4.036734 GCTTGAGTGAGATCTAGAGGAGTG 59.963 50.000 0.00 0.00 0.00 3.51
1622 1697 4.261322 GCAGAGCTTGAGTGAGATCTAGAG 60.261 50.000 0.00 0.00 40.21 2.43
1625 1700 3.630168 AGCAGAGCTTGAGTGAGATCTA 58.370 45.455 0.00 0.00 40.21 1.98
1659 1734 0.399376 TGTGACAGGTAGGTGGTGGT 60.399 55.000 0.00 0.00 0.00 4.16
1701 1792 3.245514 ACCCTCTTTTAGGCTTTTACCCC 60.246 47.826 0.00 0.00 45.03 4.95
1702 1793 4.043608 ACCCTCTTTTAGGCTTTTACCC 57.956 45.455 0.00 0.00 45.03 3.69
1703 1794 4.155462 CGAACCCTCTTTTAGGCTTTTACC 59.845 45.833 0.00 0.00 45.03 2.85
1704 1795 4.155462 CCGAACCCTCTTTTAGGCTTTTAC 59.845 45.833 0.00 0.00 45.03 2.01
1705 1796 4.202493 ACCGAACCCTCTTTTAGGCTTTTA 60.202 41.667 0.00 0.00 45.03 1.52
1706 1797 3.154710 CCGAACCCTCTTTTAGGCTTTT 58.845 45.455 0.00 0.00 45.03 2.27
1707 1798 2.107726 ACCGAACCCTCTTTTAGGCTTT 59.892 45.455 0.00 0.00 45.03 3.51
1708 1799 1.703513 ACCGAACCCTCTTTTAGGCTT 59.296 47.619 0.00 0.00 45.03 4.35
1709 1800 1.003233 CACCGAACCCTCTTTTAGGCT 59.997 52.381 0.00 0.00 45.03 4.58
1710 1801 1.002773 TCACCGAACCCTCTTTTAGGC 59.997 52.381 0.00 0.00 45.03 3.93
1711 1802 2.302157 AGTCACCGAACCCTCTTTTAGG 59.698 50.000 0.00 0.00 46.09 2.69
1712 1803 3.679824 AGTCACCGAACCCTCTTTTAG 57.320 47.619 0.00 0.00 0.00 1.85
1713 1804 3.057315 CGTAGTCACCGAACCCTCTTTTA 60.057 47.826 0.00 0.00 0.00 1.52
1714 1805 2.288640 CGTAGTCACCGAACCCTCTTTT 60.289 50.000 0.00 0.00 0.00 2.27
1715 1806 1.271656 CGTAGTCACCGAACCCTCTTT 59.728 52.381 0.00 0.00 0.00 2.52
1716 1807 0.886563 CGTAGTCACCGAACCCTCTT 59.113 55.000 0.00 0.00 0.00 2.85
1717 1808 0.037303 TCGTAGTCACCGAACCCTCT 59.963 55.000 0.00 0.00 0.00 3.69
1718 1809 1.101331 ATCGTAGTCACCGAACCCTC 58.899 55.000 0.00 0.00 37.93 4.30
1719 1810 1.553706 AATCGTAGTCACCGAACCCT 58.446 50.000 0.00 0.00 37.93 4.34
1756 1847 0.951558 CCACTTTGTTCCGTTCTGGG 59.048 55.000 0.00 0.00 38.76 4.45
1763 1854 1.463444 GACCGAATCCACTTTGTTCCG 59.537 52.381 0.00 0.00 0.00 4.30
1773 1865 0.904649 ATCACAGCTGACCGAATCCA 59.095 50.000 23.35 0.00 0.00 3.41
1794 1886 1.270826 ACATCACCGAGCATCTATCCG 59.729 52.381 0.00 0.00 0.00 4.18
1806 1898 0.171007 GCACATTTCCCACATCACCG 59.829 55.000 0.00 0.00 0.00 4.94
1809 1901 2.583024 TCTGCACATTTCCCACATCA 57.417 45.000 0.00 0.00 0.00 3.07
1810 1902 2.100252 CCATCTGCACATTTCCCACATC 59.900 50.000 0.00 0.00 0.00 3.06
1811 1903 2.104967 CCATCTGCACATTTCCCACAT 58.895 47.619 0.00 0.00 0.00 3.21
1812 1904 1.548081 CCATCTGCACATTTCCCACA 58.452 50.000 0.00 0.00 0.00 4.17
1813 1905 0.174162 GCCATCTGCACATTTCCCAC 59.826 55.000 0.00 0.00 40.77 4.61
1814 1906 0.040058 AGCCATCTGCACATTTCCCA 59.960 50.000 0.00 0.00 44.83 4.37
1815 1907 1.134907 CAAGCCATCTGCACATTTCCC 60.135 52.381 0.00 0.00 44.83 3.97
1816 1908 1.547372 ACAAGCCATCTGCACATTTCC 59.453 47.619 0.00 0.00 44.83 3.13
1817 1909 2.229543 TCACAAGCCATCTGCACATTTC 59.770 45.455 0.00 0.00 44.83 2.17
1818 1910 2.230508 CTCACAAGCCATCTGCACATTT 59.769 45.455 0.00 0.00 44.83 2.32
1819 1911 1.816835 CTCACAAGCCATCTGCACATT 59.183 47.619 0.00 0.00 44.83 2.71
1820 1912 1.003928 TCTCACAAGCCATCTGCACAT 59.996 47.619 0.00 0.00 44.83 3.21
1889 1982 0.476338 TGCCCAAACCTACTGCTGAA 59.524 50.000 0.00 0.00 0.00 3.02
1894 1987 1.247567 CCTGTTGCCCAAACCTACTG 58.752 55.000 0.00 0.00 38.06 2.74
1952 2050 1.956629 ATCCCGGCGTGATTTCGACT 61.957 55.000 6.01 0.00 36.62 4.18
1968 2066 1.337071 TCGTAATCAGCGGTCTCATCC 59.663 52.381 0.00 0.00 0.00 3.51
1990 2088 5.878116 ACAAAGCCAAATTCATCATCCAATG 59.122 36.000 0.00 0.00 0.00 2.82
2017 2115 0.884704 GTTCGACAGCCTCCTGCAAA 60.885 55.000 0.00 0.00 43.02 3.68
2106 2204 5.333952 GCTGAAGACACAATGAAGACTGAAG 60.334 44.000 0.00 0.00 0.00 3.02
2111 2209 3.812053 ACAGCTGAAGACACAATGAAGAC 59.188 43.478 23.35 0.00 0.00 3.01
2113 2211 3.608707 GCACAGCTGAAGACACAATGAAG 60.609 47.826 23.35 0.00 0.00 3.02
2115 2213 1.875514 GCACAGCTGAAGACACAATGA 59.124 47.619 23.35 0.00 0.00 2.57
2116 2214 1.605232 TGCACAGCTGAAGACACAATG 59.395 47.619 23.35 5.71 0.00 2.82
2117 2215 1.605710 GTGCACAGCTGAAGACACAAT 59.394 47.619 23.35 0.00 0.00 2.71
2118 2216 1.016627 GTGCACAGCTGAAGACACAA 58.983 50.000 23.35 0.00 0.00 3.33
2120 2218 0.585357 CAGTGCACAGCTGAAGACAC 59.415 55.000 23.35 20.30 36.12 3.67
2122 2220 1.586422 TTCAGTGCACAGCTGAAGAC 58.414 50.000 23.35 12.79 44.90 3.01
2126 2224 1.071987 CCCTTCAGTGCACAGCTGA 59.928 57.895 23.35 11.53 40.76 4.26
2127 2225 2.623915 GCCCTTCAGTGCACAGCTG 61.624 63.158 21.04 13.48 35.43 4.24
2128 2226 2.282040 GCCCTTCAGTGCACAGCT 60.282 61.111 21.04 0.00 0.00 4.24
2130 2228 1.970114 CAGGCCCTTCAGTGCACAG 60.970 63.158 21.04 11.93 0.00 3.66
2132 2230 2.674380 CCAGGCCCTTCAGTGCAC 60.674 66.667 9.40 9.40 0.00 4.57
2133 2231 2.296945 AAACCAGGCCCTTCAGTGCA 62.297 55.000 0.00 0.00 0.00 4.57
2134 2232 1.527433 GAAACCAGGCCCTTCAGTGC 61.527 60.000 0.00 0.00 0.00 4.40
2135 2233 0.895559 GGAAACCAGGCCCTTCAGTG 60.896 60.000 0.00 0.00 0.00 3.66
2136 2234 1.460699 GGAAACCAGGCCCTTCAGT 59.539 57.895 0.00 0.00 0.00 3.41
2154 2258 2.288395 GCCCAAAACACAGACATTCAGG 60.288 50.000 0.00 0.00 0.00 3.86
2221 2325 1.338655 GAGGTTCCTCAGCGATCCTAC 59.661 57.143 13.31 0.00 33.04 3.18
2223 2327 0.324738 TGAGGTTCCTCAGCGATCCT 60.325 55.000 16.47 0.00 38.06 3.24
2271 2375 0.764369 CAGGAGGTATAGGGCCAGCA 60.764 60.000 6.18 0.00 0.00 4.41
2337 2441 7.823745 AAGAACTCCAAATGTACAGACAAAT 57.176 32.000 0.33 0.00 39.59 2.32
2394 2498 3.244215 ACAAGAGACGAATGAAGAAGGCA 60.244 43.478 0.00 0.00 0.00 4.75
2580 2686 6.850752 ACAGAAAAGAAAAGGAGTTTGGAA 57.149 33.333 0.00 0.00 0.00 3.53
2584 2690 9.588096 ACCATATACAGAAAAGAAAAGGAGTTT 57.412 29.630 0.00 0.00 0.00 2.66
2702 2848 9.814899 TGAACATTTTGATGTCACAAACTAAAT 57.185 25.926 0.00 0.00 39.08 1.40
2707 2853 7.697352 TCATGAACATTTTGATGTCACAAAC 57.303 32.000 0.00 0.00 39.08 2.93
2822 2968 4.006780 ACAAAAGCCCATGGACAAATTC 57.993 40.909 15.22 0.00 0.00 2.17
3074 3226 4.083565 GTGGGAGGTGCCTTTTGTAATAA 58.916 43.478 0.00 0.00 36.66 1.40
3090 3246 8.478877 ACTTCTAACTGATATTAACAGTGGGAG 58.521 37.037 7.30 9.54 46.01 4.30
3126 3282 2.571653 AGACCTGCAAACTAGCCATGTA 59.428 45.455 0.00 0.00 0.00 2.29
3129 3285 2.840651 ACTAGACCTGCAAACTAGCCAT 59.159 45.455 16.29 1.56 37.64 4.40
3147 3303 2.039879 GAGGCAGTTCCCCTGAAAACTA 59.960 50.000 0.00 0.00 44.49 2.24
3166 3322 4.006989 CGGATAGAGTAGTCATCCTGGAG 58.993 52.174 18.79 0.00 36.81 3.86
3177 3333 2.355132 AGCACGTTGTCGGATAGAGTAG 59.645 50.000 0.00 0.00 41.85 2.57
3224 3380 1.550524 TGTGTAGCTTGTAGAGGCTGG 59.449 52.381 6.76 0.00 39.31 4.85
3225 3381 2.996621 GTTGTGTAGCTTGTAGAGGCTG 59.003 50.000 6.76 0.00 39.31 4.85
3238 3394 7.421530 AGTTAACACTGCAATAGTTGTGTAG 57.578 36.000 8.61 0.00 41.97 2.74
3246 3403 9.926751 CATCATTTCTAGTTAACACTGCAATAG 57.073 33.333 8.61 0.00 34.06 1.73
3289 3446 5.224821 TGAATTCCAATGTCCATGCAAAA 57.775 34.783 2.27 0.00 0.00 2.44
3292 3449 3.833650 AGTTGAATTCCAATGTCCATGCA 59.166 39.130 2.27 0.00 37.08 3.96
3293 3450 4.082081 TGAGTTGAATTCCAATGTCCATGC 60.082 41.667 2.27 0.00 37.08 4.06
3304 3461 6.351327 CTCGGATTAACTGAGTTGAATTCC 57.649 41.667 8.33 4.00 44.48 3.01
3317 3474 7.033791 TGATGTTCAGTACTTCTCGGATTAAC 58.966 38.462 0.00 0.00 33.32 2.01
3378 3541 7.067494 GCAGTGATGGTAAATCCTACAGAATTT 59.933 37.037 0.00 0.00 37.07 1.82
3379 3542 6.543831 GCAGTGATGGTAAATCCTACAGAATT 59.456 38.462 0.00 0.00 37.07 2.17
3380 3543 6.058183 GCAGTGATGGTAAATCCTACAGAAT 58.942 40.000 0.00 0.00 37.07 2.40
3381 3544 5.189736 AGCAGTGATGGTAAATCCTACAGAA 59.810 40.000 0.00 0.00 37.07 3.02
3530 4069 3.433615 CGATGGAAGTTGAAGTTCACCTC 59.566 47.826 14.11 2.49 29.20 3.85
3535 4074 4.307432 TCAGTCGATGGAAGTTGAAGTTC 58.693 43.478 4.18 4.18 0.00 3.01
3537 4076 4.336889 TTCAGTCGATGGAAGTTGAAGT 57.663 40.909 0.00 0.00 0.00 3.01
3577 4118 1.560923 AATTAGCAGCTGTAGACGCG 58.439 50.000 16.64 3.53 0.00 6.01
3635 4176 2.504367 AGTCGGTTGCTGCACTTTATT 58.496 42.857 0.00 0.00 0.00 1.40
3871 4413 5.765176 TCTGAAAGAAGCATGAACACATTG 58.235 37.500 0.00 0.00 42.31 2.82
3889 4435 8.571461 AACTTTTCAGCATATCAGAATCTGAA 57.429 30.769 17.59 7.26 44.04 3.02
4105 4655 2.945668 AGCCGCAATCTTAGACAAATCC 59.054 45.455 0.00 0.00 0.00 3.01
4106 4656 3.623060 TGAGCCGCAATCTTAGACAAATC 59.377 43.478 0.00 0.00 0.00 2.17
4117 4667 1.160137 AGTGTTTCTGAGCCGCAATC 58.840 50.000 0.00 0.00 0.00 2.67
4124 4674 8.257830 AGCTACTATAAAAAGTGTTTCTGAGC 57.742 34.615 0.00 0.00 0.00 4.26
4507 5080 4.865776 AGTTCAGCTCTGATATAGCGAAC 58.134 43.478 16.97 16.97 44.44 3.95
4574 5147 4.947388 GTCCACAGGTAAAATCCAAGCATA 59.053 41.667 0.00 0.00 0.00 3.14
4581 5154 6.541934 AGTACTAGTCCACAGGTAAAATCC 57.458 41.667 0.00 0.00 0.00 3.01
4583 5156 9.134055 GAGATAGTACTAGTCCACAGGTAAAAT 57.866 37.037 8.85 0.00 0.00 1.82
4594 5167 6.066032 AGCTCCAAAGAGATAGTACTAGTCC 58.934 44.000 8.85 0.66 43.39 3.85
4634 5209 3.459232 TTCACCAAGTCAGAGACTGTG 57.541 47.619 9.92 9.92 42.59 3.66
4644 5219 4.044426 GCTGTTGTTCATTTCACCAAGTC 58.956 43.478 0.00 0.00 0.00 3.01
4730 5306 1.332195 AGGGAAAGAGGCTTTGTTGC 58.668 50.000 0.00 0.00 0.00 4.17
4922 5503 4.052608 TGAACGCGATCTTTGAGTAACAA 58.947 39.130 15.93 0.00 36.65 2.83
4924 5505 4.150098 ACTTGAACGCGATCTTTGAGTAAC 59.850 41.667 15.93 0.00 0.00 2.50
4942 5523 5.221402 TGTGCCAGCATTTCATTTTACTTGA 60.221 36.000 0.00 0.00 0.00 3.02
4943 5524 4.989797 TGTGCCAGCATTTCATTTTACTTG 59.010 37.500 0.00 0.00 0.00 3.16
5060 5644 0.391793 GGCTGCTGGAGGTACTTGAC 60.392 60.000 0.00 0.00 41.55 3.18
5080 5664 0.758685 CCAGCTTCCCGATCTCCTCT 60.759 60.000 0.00 0.00 0.00 3.69
5281 5865 3.303135 AACGACAGGGCGAGCTCA 61.303 61.111 15.40 0.00 34.83 4.26
5367 5964 1.748500 GCAAGGAGGCAGAGAAGGC 60.749 63.158 0.00 0.00 0.00 4.35
5368 5965 1.077858 GGCAAGGAGGCAGAGAAGG 60.078 63.158 0.00 0.00 43.51 3.46
5376 5973 0.615850 ACAAGTAGAGGCAAGGAGGC 59.384 55.000 0.00 0.00 44.61 4.70
5379 5976 3.097614 GGAGTACAAGTAGAGGCAAGGA 58.902 50.000 0.00 0.00 0.00 3.36
5385 5982 3.970842 ACAGAGGGAGTACAAGTAGAGG 58.029 50.000 0.00 0.00 0.00 3.69
5386 5983 7.648039 ATTTACAGAGGGAGTACAAGTAGAG 57.352 40.000 0.00 0.00 0.00 2.43
5387 5984 9.537852 TTTATTTACAGAGGGAGTACAAGTAGA 57.462 33.333 0.00 0.00 0.00 2.59
5397 5994 9.360093 CGCTCTTATATTTATTTACAGAGGGAG 57.640 37.037 4.76 0.00 40.49 4.30
5399 5996 9.490379 AACGCTCTTATATTTATTTACAGAGGG 57.510 33.333 8.36 8.36 42.53 4.30
5413 6010 9.685828 GAAGAAGTGATCTAAACGCTCTTATAT 57.314 33.333 0.00 0.00 37.42 0.86
5414 6011 8.683615 TGAAGAAGTGATCTAAACGCTCTTATA 58.316 33.333 0.00 0.00 37.42 0.98
5415 6012 7.548097 TGAAGAAGTGATCTAAACGCTCTTAT 58.452 34.615 0.00 0.00 37.42 1.73
5416 6013 6.920817 TGAAGAAGTGATCTAAACGCTCTTA 58.079 36.000 0.00 0.00 37.42 2.10
5417 6014 5.784177 TGAAGAAGTGATCTAAACGCTCTT 58.216 37.500 0.00 0.00 37.42 2.85
5418 6015 5.047660 ACTGAAGAAGTGATCTAAACGCTCT 60.048 40.000 0.00 0.00 37.42 4.09
5419 6016 5.164954 ACTGAAGAAGTGATCTAAACGCTC 58.835 41.667 0.00 0.00 37.42 5.03
5420 6017 5.140747 ACTGAAGAAGTGATCTAAACGCT 57.859 39.130 0.00 0.00 37.42 5.07
5432 6029 2.600731 CGCTTCGATCACTGAAGAAGT 58.399 47.619 20.00 0.00 44.42 3.01
5433 6030 1.923204 CCGCTTCGATCACTGAAGAAG 59.077 52.381 17.03 17.03 44.42 2.85
5434 6031 1.272490 ACCGCTTCGATCACTGAAGAA 59.728 47.619 11.65 0.00 44.42 2.52
5435 6032 0.888619 ACCGCTTCGATCACTGAAGA 59.111 50.000 11.65 0.00 44.42 2.87
5436 6033 1.135257 AGACCGCTTCGATCACTGAAG 60.135 52.381 4.89 4.89 44.46 3.02
5437 6034 0.888619 AGACCGCTTCGATCACTGAA 59.111 50.000 0.00 0.00 0.00 3.02
5438 6035 0.888619 AAGACCGCTTCGATCACTGA 59.111 50.000 0.00 0.00 0.00 3.41
5439 6036 2.561733 TAAGACCGCTTCGATCACTG 57.438 50.000 0.00 0.00 35.56 3.66
5440 6037 5.455056 AATATAAGACCGCTTCGATCACT 57.545 39.130 0.00 0.00 35.56 3.41
5441 6038 5.921408 AGAAATATAAGACCGCTTCGATCAC 59.079 40.000 0.00 0.00 35.56 3.06
5442 6039 6.085555 AGAAATATAAGACCGCTTCGATCA 57.914 37.500 0.00 0.00 35.56 2.92
5443 6040 7.409465 AAAGAAATATAAGACCGCTTCGATC 57.591 36.000 0.00 0.00 35.56 3.69
5445 6042 9.622004 CTATAAAGAAATATAAGACCGCTTCGA 57.378 33.333 0.00 0.00 35.56 3.71
5446 6043 9.622004 TCTATAAAGAAATATAAGACCGCTTCG 57.378 33.333 0.00 0.00 35.56 3.79
5448 6045 9.930693 CCTCTATAAAGAAATATAAGACCGCTT 57.069 33.333 0.00 0.00 38.15 4.68
5449 6046 8.532819 CCCTCTATAAAGAAATATAAGACCGCT 58.467 37.037 0.00 0.00 0.00 5.52
5450 6047 8.529476 TCCCTCTATAAAGAAATATAAGACCGC 58.471 37.037 0.00 0.00 0.00 5.68
5459 6056 8.139989 GCGTTGTACTCCCTCTATAAAGAAATA 58.860 37.037 0.00 0.00 0.00 1.40
5460 6057 6.985059 GCGTTGTACTCCCTCTATAAAGAAAT 59.015 38.462 0.00 0.00 0.00 2.17
5461 6058 6.154021 AGCGTTGTACTCCCTCTATAAAGAAA 59.846 38.462 0.00 0.00 0.00 2.52
5462 6059 5.655532 AGCGTTGTACTCCCTCTATAAAGAA 59.344 40.000 0.00 0.00 0.00 2.52
5463 6060 5.198965 AGCGTTGTACTCCCTCTATAAAGA 58.801 41.667 0.00 0.00 0.00 2.52
5464 6061 5.517322 AGCGTTGTACTCCCTCTATAAAG 57.483 43.478 0.00 0.00 0.00 1.85
5465 6062 5.657474 CAAGCGTTGTACTCCCTCTATAAA 58.343 41.667 0.00 0.00 0.00 1.40
5466 6063 4.441079 GCAAGCGTTGTACTCCCTCTATAA 60.441 45.833 0.00 0.00 0.00 0.98
5467 6064 3.067742 GCAAGCGTTGTACTCCCTCTATA 59.932 47.826 0.00 0.00 0.00 1.31
5468 6065 2.159085 GCAAGCGTTGTACTCCCTCTAT 60.159 50.000 0.00 0.00 0.00 1.98
5469 6066 1.203994 GCAAGCGTTGTACTCCCTCTA 59.796 52.381 0.00 0.00 0.00 2.43
5470 6067 0.037232 GCAAGCGTTGTACTCCCTCT 60.037 55.000 0.00 0.00 0.00 3.69
5471 6068 0.037232 AGCAAGCGTTGTACTCCCTC 60.037 55.000 0.00 0.00 0.00 4.30
5472 6069 1.263356 TAGCAAGCGTTGTACTCCCT 58.737 50.000 0.00 0.00 0.00 4.20
5473 6070 2.088950 TTAGCAAGCGTTGTACTCCC 57.911 50.000 0.00 0.00 0.00 4.30
5474 6071 3.064931 ACTTTAGCAAGCGTTGTACTCC 58.935 45.455 0.00 0.00 32.57 3.85
5475 6072 3.181543 CGACTTTAGCAAGCGTTGTACTC 60.182 47.826 0.00 0.00 32.57 2.59
5476 6073 2.729882 CGACTTTAGCAAGCGTTGTACT 59.270 45.455 0.00 0.00 32.57 2.73
5477 6074 2.159881 CCGACTTTAGCAAGCGTTGTAC 60.160 50.000 0.00 0.00 32.57 2.90
5505 6102 0.251341 CAAGCTAAACCCAGCCCACT 60.251 55.000 0.00 0.00 42.84 4.00
5506 6103 1.250840 CCAAGCTAAACCCAGCCCAC 61.251 60.000 0.00 0.00 42.84 4.61
5507 6104 1.076549 CCAAGCTAAACCCAGCCCA 59.923 57.895 0.00 0.00 42.84 5.36
5508 6105 0.033109 ATCCAAGCTAAACCCAGCCC 60.033 55.000 0.00 0.00 42.84 5.19
5509 6106 1.751351 GAATCCAAGCTAAACCCAGCC 59.249 52.381 0.00 0.00 42.84 4.85
5510 6107 2.685388 GAGAATCCAAGCTAAACCCAGC 59.315 50.000 0.00 0.00 42.12 4.85
5511 6108 3.944015 CAGAGAATCCAAGCTAAACCCAG 59.056 47.826 0.00 0.00 33.66 4.45
5512 6109 3.587061 TCAGAGAATCCAAGCTAAACCCA 59.413 43.478 0.00 0.00 33.66 4.51
5513 6110 4.222124 TCAGAGAATCCAAGCTAAACCC 57.778 45.455 0.00 0.00 33.66 4.11
5514 6111 5.760743 GGTATCAGAGAATCCAAGCTAAACC 59.239 44.000 0.00 0.00 33.66 3.27
5515 6112 5.463724 CGGTATCAGAGAATCCAAGCTAAAC 59.536 44.000 0.00 0.00 33.66 2.01
5516 6113 5.601662 CGGTATCAGAGAATCCAAGCTAAA 58.398 41.667 0.00 0.00 33.66 1.85
5517 6114 4.501571 GCGGTATCAGAGAATCCAAGCTAA 60.502 45.833 0.00 0.00 33.66 3.09
5518 6115 3.005897 GCGGTATCAGAGAATCCAAGCTA 59.994 47.826 0.00 0.00 33.66 3.32
5519 6116 2.224161 GCGGTATCAGAGAATCCAAGCT 60.224 50.000 0.00 0.00 33.66 3.74
5520 6117 2.139118 GCGGTATCAGAGAATCCAAGC 58.861 52.381 0.00 0.00 33.66 4.01
5521 6118 3.742433 AGCGGTATCAGAGAATCCAAG 57.258 47.619 0.00 0.00 33.66 3.61
5522 6119 3.797039 CAAGCGGTATCAGAGAATCCAA 58.203 45.455 0.00 0.00 33.66 3.53
5523 6120 2.483714 GCAAGCGGTATCAGAGAATCCA 60.484 50.000 0.00 0.00 33.66 3.41
5524 6121 2.139118 GCAAGCGGTATCAGAGAATCC 58.861 52.381 0.00 0.00 33.66 3.01
5525 6122 2.139118 GGCAAGCGGTATCAGAGAATC 58.861 52.381 0.00 0.00 0.00 2.52
5526 6123 1.202698 GGGCAAGCGGTATCAGAGAAT 60.203 52.381 0.00 0.00 0.00 2.40
5527 6124 0.178068 GGGCAAGCGGTATCAGAGAA 59.822 55.000 0.00 0.00 0.00 2.87
5528 6125 0.975556 TGGGCAAGCGGTATCAGAGA 60.976 55.000 0.00 0.00 0.00 3.10
5529 6126 0.531532 CTGGGCAAGCGGTATCAGAG 60.532 60.000 0.00 0.00 0.00 3.35
5530 6127 1.264749 ACTGGGCAAGCGGTATCAGA 61.265 55.000 11.46 0.00 0.00 3.27
5531 6128 0.392998 AACTGGGCAAGCGGTATCAG 60.393 55.000 0.00 0.00 0.00 2.90
5532 6129 0.392461 GAACTGGGCAAGCGGTATCA 60.392 55.000 0.00 0.00 0.00 2.15
5533 6130 1.429148 CGAACTGGGCAAGCGGTATC 61.429 60.000 0.00 0.00 0.00 2.24
5534 6131 1.449601 CGAACTGGGCAAGCGGTAT 60.450 57.895 0.00 0.00 0.00 2.73
5535 6132 2.047655 CGAACTGGGCAAGCGGTA 60.048 61.111 0.00 0.00 0.00 4.02
5545 6142 3.673956 TACATGGCGGCCGAACTGG 62.674 63.158 33.48 18.03 42.50 4.00
5546 6143 1.095228 ATTACATGGCGGCCGAACTG 61.095 55.000 33.48 23.23 0.00 3.16
5648 6246 3.904800 AACAGAAAAACAAGGTTGGGG 57.095 42.857 0.00 0.00 0.00 4.96
5649 6247 4.647399 TCCTAACAGAAAAACAAGGTTGGG 59.353 41.667 0.00 0.00 40.28 4.12
5650 6248 5.359860 ACTCCTAACAGAAAAACAAGGTTGG 59.640 40.000 0.00 0.00 0.00 3.77
5651 6249 6.451064 ACTCCTAACAGAAAAACAAGGTTG 57.549 37.500 0.00 0.00 0.00 3.77
5665 6264 3.624707 GCATCCATTCCCAACTCCTAACA 60.625 47.826 0.00 0.00 0.00 2.41
5670 6269 1.684983 CATGCATCCATTCCCAACTCC 59.315 52.381 0.00 0.00 0.00 3.85
5677 6280 3.383825 AGAGAAAAGCATGCATCCATTCC 59.616 43.478 21.98 9.84 0.00 3.01
5679 6282 5.443283 TCTAGAGAAAAGCATGCATCCATT 58.557 37.500 21.98 6.80 0.00 3.16
5682 6285 5.307204 AGATCTAGAGAAAAGCATGCATCC 58.693 41.667 21.98 5.88 0.00 3.51
5686 6289 5.730010 GCACAAGATCTAGAGAAAAGCATGC 60.730 44.000 10.51 10.51 0.00 4.06
5687 6290 5.502058 CGCACAAGATCTAGAGAAAAGCATG 60.502 44.000 0.00 0.00 0.00 4.06
5697 6301 3.067320 CAGACCATCGCACAAGATCTAGA 59.933 47.826 0.00 0.00 0.00 2.43
5707 6311 2.162716 GTCCAACAGACCATCGCAC 58.837 57.895 0.00 0.00 39.84 5.34
5725 6329 2.241259 AAAACGTCGAAATGCATCGG 57.759 45.000 9.67 0.00 42.92 4.18
5778 6382 4.039124 TGAGCCGTATGCATCTTTCTGATA 59.961 41.667 0.19 0.00 44.83 2.15
5828 6433 2.159476 GCACCACGTTACTCGATGACTA 60.159 50.000 0.00 0.00 42.86 2.59
5948 6553 2.074729 TTTCAACCGGTTTGGATGGT 57.925 45.000 19.55 0.00 40.78 3.55
5971 6576 4.971125 GGAGATGGTAGCGCCGGC 62.971 72.222 19.07 19.07 41.21 6.13
5974 6579 1.004440 GATGGGAGATGGTAGCGCC 60.004 63.158 2.29 0.00 37.90 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.