Multiple sequence alignment - TraesCS2A01G579700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G579700 chr2A 100.000 4718 0 0 1 4718 772222260 772217543 0.000000e+00 8713.0
1 TraesCS2A01G579700 chr2A 88.953 688 74 1 1268 1953 772235436 772236123 0.000000e+00 848.0
2 TraesCS2A01G579700 chr2A 80.097 618 119 4 2832 3447 551722707 551723322 1.550000e-124 457.0
3 TraesCS2A01G579700 chr2A 87.129 101 12 1 1050 1150 772230802 772230901 3.860000e-21 113.0
4 TraesCS2A01G579700 chr2A 100.000 31 0 0 753 783 104786132 104786162 1.830000e-04 58.4
5 TraesCS2A01G579700 chr2D 91.125 1983 130 24 2640 4605 650654979 650653026 0.000000e+00 2645.0
6 TraesCS2A01G579700 chr2D 95.041 1089 48 2 1038 2120 650656298 650655210 0.000000e+00 1707.0
7 TraesCS2A01G579700 chr2D 94.652 991 44 5 2640 3622 650661150 650660161 0.000000e+00 1528.0
8 TraesCS2A01G579700 chr2D 82.956 663 71 25 59 684 650658398 650657741 1.150000e-155 560.0
9 TraesCS2A01G579700 chr2D 81.410 624 112 4 2832 3453 435071078 435070457 1.510000e-139 507.0
10 TraesCS2A01G579700 chr2D 92.241 232 13 4 2222 2452 650655209 650654982 1.640000e-84 324.0
11 TraesCS2A01G579700 chr2D 92.241 232 13 5 2222 2452 650661380 650661153 1.640000e-84 324.0
12 TraesCS2A01G579700 chr2D 95.604 182 8 0 2455 2636 16014770 16014951 4.620000e-75 292.0
13 TraesCS2A01G579700 chr2D 91.818 110 9 0 2118 2227 67702559 67702668 2.270000e-33 154.0
14 TraesCS2A01G579700 chr2B 94.139 1109 63 2 1011 2119 787820527 787819421 0.000000e+00 1687.0
15 TraesCS2A01G579700 chr2B 95.395 912 40 2 2681 3590 787819168 787818257 0.000000e+00 1450.0
16 TraesCS2A01G579700 chr2B 89.678 901 79 8 3639 4535 787818254 787817364 0.000000e+00 1136.0
17 TraesCS2A01G579700 chr2B 78.587 906 168 18 1104 1990 513481216 513480318 4.090000e-160 575.0
18 TraesCS2A01G579700 chr2B 81.280 625 115 2 2830 3453 513480078 513479455 5.450000e-139 505.0
19 TraesCS2A01G579700 chr2B 89.177 231 15 3 2222 2452 787819423 787819203 3.600000e-71 279.0
20 TraesCS2A01G579700 chr2B 84.167 240 35 3 448 685 787822453 787822691 3.670000e-56 230.0
21 TraesCS2A01G579700 chr5B 87.828 1068 88 15 1056 2116 622553265 622554297 0.000000e+00 1214.0
22 TraesCS2A01G579700 chr5B 89.216 918 93 5 2790 3706 622555339 622556251 0.000000e+00 1142.0
23 TraesCS2A01G579700 chr5B 75.787 921 190 22 1104 1997 537964065 537963151 7.250000e-118 435.0
24 TraesCS2A01G579700 chr5A 89.389 867 84 4 2827 3692 626229010 626228151 0.000000e+00 1085.0
25 TraesCS2A01G579700 chr5A 89.773 792 80 1 1090 1881 626232684 626231894 0.000000e+00 1013.0
26 TraesCS2A01G579700 chr5A 75.251 796 171 18 1183 1962 558311861 558311076 5.810000e-94 355.0
27 TraesCS2A01G579700 chr5A 93.782 193 11 1 2451 2642 515773708 515773900 5.970000e-74 289.0
28 TraesCS2A01G579700 chr5A 96.748 123 4 0 1896 2018 626231796 626231674 6.190000e-49 206.0
29 TraesCS2A01G579700 chr5D 82.068 619 105 6 2832 3447 522759638 522759023 1.500000e-144 523.0
30 TraesCS2A01G579700 chr5D 75.356 913 194 21 1104 1990 441927044 441926137 1.220000e-110 411.0
31 TraesCS2A01G579700 chr5D 94.681 188 9 1 2456 2642 442013120 442012933 1.660000e-74 291.0
32 TraesCS2A01G579700 chr3B 85.132 417 61 1 270 685 17334862 17334446 4.360000e-115 425.0
33 TraesCS2A01G579700 chr3B 79.828 233 47 0 452 684 32265158 32265390 2.260000e-38 171.0
34 TraesCS2A01G579700 chr7D 95.745 188 7 1 2454 2640 412100695 412100508 7.670000e-78 302.0
35 TraesCS2A01G579700 chr7D 93.939 198 10 2 2441 2637 433896575 433896379 9.930000e-77 298.0
36 TraesCS2A01G579700 chr7D 94.211 190 10 1 2454 2642 45145959 45145770 5.970000e-74 289.0
37 TraesCS2A01G579700 chrUn 94.709 189 9 1 2450 2637 175473991 175473803 4.620000e-75 292.0
38 TraesCS2A01G579700 chr4D 93.782 193 11 1 2448 2639 3288328 3288520 5.970000e-74 289.0
39 TraesCS2A01G579700 chr4D 93.782 193 11 1 2450 2641 62476936 62477128 5.970000e-74 289.0
40 TraesCS2A01G579700 chr6B 92.105 114 9 0 2113 2226 169224533 169224646 1.360000e-35 161.0
41 TraesCS2A01G579700 chr6B 100.000 28 0 0 756 783 469768598 469768571 9.000000e-03 52.8
42 TraesCS2A01G579700 chr4A 92.593 108 8 0 2118 2225 47116518 47116411 6.320000e-34 156.0
43 TraesCS2A01G579700 chr4A 100.000 28 0 0 756 783 6487637 6487610 9.000000e-03 52.8
44 TraesCS2A01G579700 chr3A 92.593 108 8 0 2119 2226 601362165 601362058 6.320000e-34 156.0
45 TraesCS2A01G579700 chr3A 91.228 114 9 1 2115 2227 336604531 336604644 2.270000e-33 154.0
46 TraesCS2A01G579700 chr3A 92.523 107 8 0 2118 2224 557229118 557229012 2.270000e-33 154.0
47 TraesCS2A01G579700 chr3D 91.150 113 10 0 2115 2227 263778161 263778273 2.270000e-33 154.0
48 TraesCS2A01G579700 chr3D 100.000 28 0 0 756 783 272500320 272500293 9.000000e-03 52.8
49 TraesCS2A01G579700 chr1D 91.818 110 9 0 2116 2225 69087994 69088103 2.270000e-33 154.0
50 TraesCS2A01G579700 chr6D 91.071 112 10 0 2116 2227 343556372 343556261 8.180000e-33 152.0
51 TraesCS2A01G579700 chr6D 96.774 31 1 0 753 783 362969800 362969830 9.000000e-03 52.8
52 TraesCS2A01G579700 chr6A 91.071 56 4 1 84 138 565433427 565433482 1.820000e-09 75.0
53 TraesCS2A01G579700 chr7A 96.774 31 1 0 753 783 246267654 246267684 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G579700 chr2A 772217543 772222260 4717 True 8713.000000 8713 100.00000 1 4718 1 chr2A.!!$R1 4717
1 TraesCS2A01G579700 chr2A 772235436 772236123 687 False 848.000000 848 88.95300 1268 1953 1 chr2A.!!$F4 685
2 TraesCS2A01G579700 chr2A 551722707 551723322 615 False 457.000000 457 80.09700 2832 3447 1 chr2A.!!$F2 615
3 TraesCS2A01G579700 chr2D 650653026 650661380 8354 True 1181.333333 2645 91.37600 59 4605 6 chr2D.!!$R2 4546
4 TraesCS2A01G579700 chr2D 435070457 435071078 621 True 507.000000 507 81.41000 2832 3453 1 chr2D.!!$R1 621
5 TraesCS2A01G579700 chr2B 787817364 787820527 3163 True 1138.000000 1687 92.09725 1011 4535 4 chr2B.!!$R2 3524
6 TraesCS2A01G579700 chr2B 513479455 513481216 1761 True 540.000000 575 79.93350 1104 3453 2 chr2B.!!$R1 2349
7 TraesCS2A01G579700 chr5B 622553265 622556251 2986 False 1178.000000 1214 88.52200 1056 3706 2 chr5B.!!$F1 2650
8 TraesCS2A01G579700 chr5B 537963151 537964065 914 True 435.000000 435 75.78700 1104 1997 1 chr5B.!!$R1 893
9 TraesCS2A01G579700 chr5A 626228151 626232684 4533 True 768.000000 1085 91.97000 1090 3692 3 chr5A.!!$R2 2602
10 TraesCS2A01G579700 chr5A 558311076 558311861 785 True 355.000000 355 75.25100 1183 1962 1 chr5A.!!$R1 779
11 TraesCS2A01G579700 chr5D 522759023 522759638 615 True 523.000000 523 82.06800 2832 3447 1 chr5D.!!$R3 615
12 TraesCS2A01G579700 chr5D 441926137 441927044 907 True 411.000000 411 75.35600 1104 1990 1 chr5D.!!$R1 886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 3458 0.040058 TGGCCCACATCTCATTTGCT 59.960 50.0 0.0 0.0 0.0 3.91 F
849 4325 0.405198 TGCCATGTCCATCCACTTGT 59.595 50.0 0.0 0.0 0.0 3.16 F
1378 5466 0.106819 GGCAGATGATGAAGGGCAGT 60.107 55.0 0.0 0.0 0.0 4.40 F
2573 7571 0.105709 CCCAAAAAGTCCCACCCTGT 60.106 55.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1355 5443 0.178998 CCCTTCATCATCTGCCCCAG 60.179 60.0 0.00 0.0 0.00 4.45 R
2554 7552 0.105709 ACAGGGTGGGACTTTTTGGG 60.106 55.0 0.00 0.0 0.00 4.12 R
2624 7622 0.184933 TTGACTCAGGGGGTGTTTGG 59.815 55.0 0.00 0.0 0.00 3.28 R
4122 10611 0.035534 TGGCTATGGCAATCGTGTGT 60.036 50.0 2.58 0.0 40.87 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.788766 CGTACAGCTGCCGCCAAC 61.789 66.667 15.27 1.87 36.60 3.77
20 21 3.997397 TACAGCTGCCGCCAACGA 61.997 61.111 15.27 0.00 43.93 3.85
21 22 3.932580 TACAGCTGCCGCCAACGAG 62.933 63.158 15.27 0.00 43.93 4.18
23 24 3.691342 AGCTGCCGCCAACGAGTA 61.691 61.111 0.00 0.00 43.93 2.59
24 25 3.188786 GCTGCCGCCAACGAGTAG 61.189 66.667 0.00 0.00 43.93 2.57
25 26 3.188786 CTGCCGCCAACGAGTAGC 61.189 66.667 0.00 0.00 43.93 3.58
26 27 3.649277 CTGCCGCCAACGAGTAGCT 62.649 63.158 0.00 0.00 43.93 3.32
27 28 2.886124 GCCGCCAACGAGTAGCTC 60.886 66.667 0.00 0.00 43.93 4.09
29 30 2.202756 CGCCAACGAGTAGCTCCC 60.203 66.667 0.00 0.00 43.93 4.30
30 31 2.202756 GCCAACGAGTAGCTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
31 32 2.202756 CCAACGAGTAGCTCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
32 33 2.579787 CAACGAGTAGCTCCCGCG 60.580 66.667 0.00 0.00 42.32 6.46
33 34 4.493747 AACGAGTAGCTCCCGCGC 62.494 66.667 0.00 0.00 42.32 6.86
36 37 4.273257 GAGTAGCTCCCGCGCCTC 62.273 72.222 0.00 0.00 42.32 4.70
82 3007 1.346395 TGGCCTTCACGTTGATGTACT 59.654 47.619 3.32 0.00 0.00 2.73
89 3014 2.092291 CGTTGATGTACTGCGCCGT 61.092 57.895 10.01 10.01 0.00 5.68
108 3033 4.208686 CACCGCCCTCGCTAGTCC 62.209 72.222 0.00 0.00 0.00 3.85
111 3036 2.203308 CGCCCTCGCTAGTCCCTA 60.203 66.667 0.00 0.00 0.00 3.53
142 3067 3.775654 CTCCCCTGGTCACCGAGC 61.776 72.222 0.00 0.00 0.00 5.03
147 3072 2.357517 CTGGTCACCGAGCACCAC 60.358 66.667 0.00 0.00 37.78 4.16
150 3075 2.279918 GTCACCGAGCACCACGTT 60.280 61.111 0.00 0.00 0.00 3.99
156 3081 0.389296 CCGAGCACCACGTTGTGATA 60.389 55.000 22.76 0.00 38.55 2.15
180 3119 1.952133 GTTGGCGTGTGCGTACTCA 60.952 57.895 4.97 0.00 44.10 3.41
181 3120 1.663388 TTGGCGTGTGCGTACTCAG 60.663 57.895 4.97 0.00 44.10 3.35
182 3121 2.077821 TTGGCGTGTGCGTACTCAGA 62.078 55.000 4.97 0.00 44.10 3.27
183 3122 2.087009 GGCGTGTGCGTACTCAGAC 61.087 63.158 4.97 3.16 44.10 3.51
184 3123 3.737182 CGTGTGCGTACTCAGACG 58.263 61.111 19.11 19.11 44.90 4.18
200 3139 2.262603 CGCTAGCAGCCACAGTCA 59.737 61.111 16.45 0.00 38.18 3.41
264 3203 2.432628 GTGGAACGAGCTCACGGG 60.433 66.667 15.40 0.00 37.61 5.28
265 3204 4.373116 TGGAACGAGCTCACGGGC 62.373 66.667 15.40 0.00 37.61 6.13
267 3206 2.811317 GAACGAGCTCACGGGCAG 60.811 66.667 15.40 0.00 37.61 4.85
274 3225 4.767255 CTCACGGGCAGGGCTCAC 62.767 72.222 0.00 0.00 0.00 3.51
339 3290 2.581354 CTGCTCCAGACCTTCCCG 59.419 66.667 0.00 0.00 32.44 5.14
340 3291 3.672295 CTGCTCCAGACCTTCCCGC 62.672 68.421 0.00 0.00 32.44 6.13
342 3293 4.148825 CTCCAGACCTTCCCGCCG 62.149 72.222 0.00 0.00 0.00 6.46
359 3313 4.324991 GGCGGTCCACGGAAAGGT 62.325 66.667 0.00 0.00 44.51 3.50
371 3325 1.004440 GAAAGGTGGACGAGCTGCT 60.004 57.895 0.00 0.00 30.84 4.24
425 3379 1.065109 ACGCCCAAAAGTTGTTCGC 59.935 52.632 0.00 0.00 0.00 4.70
426 3380 1.358759 CGCCCAAAAGTTGTTCGCT 59.641 52.632 0.00 0.00 0.00 4.93
435 3389 0.598065 AGTTGTTCGCTGAAATGCCC 59.402 50.000 0.00 0.00 0.00 5.36
436 3390 0.598065 GTTGTTCGCTGAAATGCCCT 59.402 50.000 0.00 0.00 0.00 5.19
437 3391 0.597568 TTGTTCGCTGAAATGCCCTG 59.402 50.000 0.00 0.00 0.00 4.45
441 3395 1.213537 CGCTGAAATGCCCTGTTGG 59.786 57.895 0.00 0.00 37.09 3.77
459 3413 3.371102 TGGAAGACAGACGTGAAGAAG 57.629 47.619 0.00 0.00 0.00 2.85
485 3439 2.303022 CCACCTAGTCATTGACAGGTGT 59.697 50.000 35.21 21.16 46.97 4.16
487 3441 2.303022 ACCTAGTCATTGACAGGTGTGG 59.697 50.000 26.43 17.34 40.11 4.17
492 3446 1.228552 ATTGACAGGTGTGGCCCAC 60.229 57.895 7.01 7.01 43.74 4.61
493 3447 2.005606 ATTGACAGGTGTGGCCCACA 62.006 55.000 13.83 13.83 46.44 4.17
502 3456 1.203052 GTGTGGCCCACATCTCATTTG 59.797 52.381 21.45 0.00 46.32 2.32
504 3458 0.040058 TGGCCCACATCTCATTTGCT 59.960 50.000 0.00 0.00 0.00 3.91
521 3475 1.009829 GCTACATCAGCCGGTCAAAG 58.990 55.000 1.90 0.00 45.23 2.77
524 3478 2.496899 ACATCAGCCGGTCAAAGAAT 57.503 45.000 1.90 0.00 0.00 2.40
565 3519 1.745489 GACAGGCGGGGCTAACTTG 60.745 63.158 0.00 0.00 0.00 3.16
573 3527 2.227194 CGGGGCTAACTTGTCAGTTTT 58.773 47.619 0.00 0.00 40.66 2.43
574 3528 3.404899 CGGGGCTAACTTGTCAGTTTTA 58.595 45.455 0.00 0.00 40.66 1.52
583 3537 8.583765 GCTAACTTGTCAGTTTTACTGTTTTTG 58.416 33.333 6.71 0.00 46.03 2.44
584 3538 9.620660 CTAACTTGTCAGTTTTACTGTTTTTGT 57.379 29.630 6.71 0.03 46.03 2.83
605 3559 5.173664 TGTGAGCTTATCAGACAATCAGTG 58.826 41.667 0.00 0.00 39.07 3.66
623 3577 6.954487 TCAGTGCTCTCCGTTATAGATTAA 57.046 37.500 0.00 0.00 0.00 1.40
632 3586 6.039047 TCTCCGTTATAGATTAAACGCAGAGT 59.961 38.462 0.00 0.00 40.07 3.24
635 3589 6.474427 CCGTTATAGATTAAACGCAGAGTTGA 59.526 38.462 2.27 0.00 45.34 3.18
638 3592 9.031360 GTTATAGATTAAACGCAGAGTTGATGA 57.969 33.333 0.00 0.00 43.37 2.92
678 3638 6.959311 GCACAAATACGGTATCAAGTTGTTAG 59.041 38.462 11.37 5.39 0.00 2.34
684 3644 3.802685 CGGTATCAAGTTGTTAGCCTAGC 59.197 47.826 14.49 3.84 0.00 3.42
685 3645 4.441634 CGGTATCAAGTTGTTAGCCTAGCT 60.442 45.833 14.49 0.00 43.41 3.32
686 3646 5.221185 CGGTATCAAGTTGTTAGCCTAGCTA 60.221 44.000 14.49 0.00 40.44 3.32
687 3647 6.217294 GGTATCAAGTTGTTAGCCTAGCTAG 58.783 44.000 14.20 14.20 42.34 3.42
688 3648 5.941555 ATCAAGTTGTTAGCCTAGCTAGT 57.058 39.130 19.31 4.58 42.34 2.57
689 3649 5.326200 TCAAGTTGTTAGCCTAGCTAGTC 57.674 43.478 19.31 6.87 42.34 2.59
690 3650 5.017490 TCAAGTTGTTAGCCTAGCTAGTCT 58.983 41.667 19.31 14.65 42.34 3.24
691 3651 5.125739 TCAAGTTGTTAGCCTAGCTAGTCTC 59.874 44.000 19.31 8.18 42.34 3.36
692 3652 4.601084 AGTTGTTAGCCTAGCTAGTCTCA 58.399 43.478 19.31 4.63 42.34 3.27
693 3653 5.017490 AGTTGTTAGCCTAGCTAGTCTCAA 58.983 41.667 19.31 10.39 42.34 3.02
694 3654 5.659079 AGTTGTTAGCCTAGCTAGTCTCAAT 59.341 40.000 19.31 2.38 42.34 2.57
695 3655 6.155393 AGTTGTTAGCCTAGCTAGTCTCAATT 59.845 38.462 19.31 7.55 42.34 2.32
706 4148 6.398918 AGCTAGTCTCAATTGTGTTCGTATT 58.601 36.000 5.13 0.00 0.00 1.89
707 4149 7.544622 AGCTAGTCTCAATTGTGTTCGTATTA 58.455 34.615 5.13 0.00 0.00 0.98
761 4203 8.028540 ACAAGTTTGTTTTCTCAATTTTCCAC 57.971 30.769 0.00 0.00 38.47 4.02
763 4205 7.832503 AGTTTGTTTTCTCAATTTTCCACAG 57.167 32.000 0.00 0.00 0.00 3.66
783 4225 3.083848 AACGCGCGGGGTATCATCA 62.084 57.895 35.22 0.00 0.00 3.07
784 4226 3.036084 CGCGCGGGGTATCATCAC 61.036 66.667 24.84 0.00 0.00 3.06
790 4233 2.688507 GCGGGGTATCATCACTACATG 58.311 52.381 0.00 0.00 0.00 3.21
791 4234 2.299013 GCGGGGTATCATCACTACATGA 59.701 50.000 0.00 0.00 43.13 3.07
804 4247 9.424319 TCATCACTACATGAAAGAGTAGTTTTC 57.576 33.333 0.00 0.00 46.36 2.29
806 4249 9.646427 ATCACTACATGAAAGAGTAGTTTTCTC 57.354 33.333 0.00 0.00 46.36 2.87
847 4323 2.537633 ATTGCCATGTCCATCCACTT 57.462 45.000 0.00 0.00 0.00 3.16
849 4325 0.405198 TGCCATGTCCATCCACTTGT 59.595 50.000 0.00 0.00 0.00 3.16
865 4341 2.544267 ACTTGTCTAACAGCGACAAAGC 59.456 45.455 6.99 0.00 46.95 3.51
869 4345 2.096713 GTCTAACAGCGACAAAGCAGTG 60.097 50.000 0.00 0.00 36.96 3.66
894 4370 4.379813 CGGCCATGATCATGCTAATTAACC 60.380 45.833 27.24 15.94 37.49 2.85
960 4436 9.622004 AGTACTGTACGTGATATTATATTGCAC 57.378 33.333 11.97 0.00 0.00 4.57
961 4437 9.401873 GTACTGTACGTGATATTATATTGCACA 57.598 33.333 0.00 0.00 0.00 4.57
963 4439 9.140286 ACTGTACGTGATATTATATTGCACATC 57.860 33.333 0.00 0.00 0.00 3.06
964 4440 9.139174 CTGTACGTGATATTATATTGCACATCA 57.861 33.333 0.00 0.00 0.00 3.07
965 4441 9.482627 TGTACGTGATATTATATTGCACATCAA 57.517 29.630 0.00 0.00 39.32 2.57
966 4442 9.741168 GTACGTGATATTATATTGCACATCAAC 57.259 33.333 0.00 0.00 37.53 3.18
969 4445 8.711457 CGTGATATTATATTGCACATCAACTCA 58.289 33.333 0.00 0.00 37.53 3.41
970 4446 9.817365 GTGATATTATATTGCACATCAACTCAC 57.183 33.333 0.00 0.00 37.53 3.51
972 4448 8.922931 ATATTATATTGCACATCAACTCACCA 57.077 30.769 0.00 0.00 37.53 4.17
977 4748 0.514255 CACATCAACTCACCAGCGTG 59.486 55.000 0.00 0.00 41.72 5.34
1000 4771 1.225704 GCTCTGCAACCTAGCCCAT 59.774 57.895 0.00 0.00 0.00 4.00
1001 4772 1.099879 GCTCTGCAACCTAGCCCATG 61.100 60.000 0.00 0.00 0.00 3.66
1005 4776 1.077501 GCAACCTAGCCCATGAGCA 60.078 57.895 0.76 0.00 34.23 4.26
1006 4777 1.099879 GCAACCTAGCCCATGAGCAG 61.100 60.000 0.76 0.00 34.23 4.24
1240 5325 3.092511 ATCGGCAGCCTCCACCAT 61.093 61.111 10.54 0.00 0.00 3.55
1243 5328 2.036256 GGCAGCCTCCACCATGTT 59.964 61.111 3.29 0.00 0.00 2.71
1374 5462 0.178998 CTGGGGCAGATGATGAAGGG 60.179 60.000 0.00 0.00 32.44 3.95
1378 5466 0.106819 GGCAGATGATGAAGGGCAGT 60.107 55.000 0.00 0.00 0.00 4.40
1392 5480 1.367840 GCAGTGACCTCCAGTTCGT 59.632 57.895 0.00 0.00 0.00 3.85
1429 5517 1.141881 GATGCAGGACATCGTCGGT 59.858 57.895 0.00 0.00 45.53 4.69
1495 5583 2.554636 CCACATGCGCAAGGTGTGT 61.555 57.895 30.30 21.13 41.15 3.72
1524 5612 2.438075 CCTCAGCTCCAAGCAGGC 60.438 66.667 1.29 0.00 45.56 4.85
1572 5660 3.092511 GATGGGCAGCCTCCTCCA 61.093 66.667 12.43 0.00 0.00 3.86
1844 5946 0.455815 CATCATCACCGACGTCCTCA 59.544 55.000 10.58 0.00 0.00 3.86
2062 6268 3.064545 GCATGTGCTTGCTTAGGACTTAG 59.935 47.826 11.11 4.20 44.81 2.18
2066 6272 4.123506 GTGCTTGCTTAGGACTTAGGATC 58.876 47.826 4.31 0.00 41.60 3.36
2086 6292 8.908786 AGGATCGCATCTTAATTAAGAAATCA 57.091 30.769 27.21 14.68 44.63 2.57
2106 6312 3.190744 TCAGTACGTCTGGACAGAATCAC 59.809 47.826 3.18 2.52 43.76 3.06
2123 6508 2.379005 TCACGCATCTGATGTACTCCT 58.621 47.619 18.19 0.00 0.00 3.69
2125 6510 3.195610 TCACGCATCTGATGTACTCCTTT 59.804 43.478 18.19 0.00 0.00 3.11
2127 6512 3.195610 ACGCATCTGATGTACTCCTTTCA 59.804 43.478 18.19 0.00 0.00 2.69
2129 6514 4.813161 CGCATCTGATGTACTCCTTTCATT 59.187 41.667 18.19 0.00 0.00 2.57
2131 6516 5.238214 GCATCTGATGTACTCCTTTCATTCC 59.762 44.000 18.19 0.00 0.00 3.01
2132 6517 5.011090 TCTGATGTACTCCTTTCATTCCG 57.989 43.478 0.00 0.00 0.00 4.30
2135 6520 5.989477 TGATGTACTCCTTTCATTCCGAAT 58.011 37.500 0.00 0.00 32.32 3.34
2145 6530 4.593597 TTCATTCCGAATTACTTGTCGC 57.406 40.909 0.00 0.00 35.93 5.19
2147 6532 4.188462 TCATTCCGAATTACTTGTCGCAT 58.812 39.130 0.00 0.00 35.93 4.73
2148 6533 4.033932 TCATTCCGAATTACTTGTCGCATG 59.966 41.667 0.00 0.00 35.93 4.06
2149 6534 2.967362 TCCGAATTACTTGTCGCATGT 58.033 42.857 0.00 4.39 35.93 3.21
2152 6537 5.834169 TCCGAATTACTTGTCGCATGTATA 58.166 37.500 0.00 1.37 35.93 1.47
2153 6538 5.918576 TCCGAATTACTTGTCGCATGTATAG 59.081 40.000 0.00 0.00 35.93 1.31
2163 6558 8.454894 ACTTGTCGCATGTATAGATGTATCTAG 58.545 37.037 11.20 9.60 42.20 2.43
2165 6560 8.738645 TGTCGCATGTATAGATGTATCTAGAT 57.261 34.615 10.73 10.73 42.20 1.98
2166 6561 8.616076 TGTCGCATGTATAGATGTATCTAGATG 58.384 37.037 15.79 9.52 42.20 2.90
2205 6600 9.078990 AGATATATCCATTTCTGTGACGAGTAA 57.921 33.333 9.18 0.00 0.00 2.24
2208 6603 8.964476 ATATCCATTTCTGTGACGAGTAATTT 57.036 30.769 0.00 0.00 0.00 1.82
2209 6604 6.480524 TCCATTTCTGTGACGAGTAATTTG 57.519 37.500 0.00 0.00 0.00 2.32
2210 6605 5.411361 TCCATTTCTGTGACGAGTAATTTGG 59.589 40.000 0.00 0.00 0.00 3.28
2211 6606 5.411361 CCATTTCTGTGACGAGTAATTTGGA 59.589 40.000 0.00 0.00 0.00 3.53
2212 6607 5.917541 TTTCTGTGACGAGTAATTTGGAC 57.082 39.130 0.00 0.00 0.00 4.02
2213 6608 3.571571 TCTGTGACGAGTAATTTGGACG 58.428 45.455 0.00 0.00 0.00 4.79
2216 6611 1.894466 TGACGAGTAATTTGGACGGGA 59.106 47.619 0.00 0.00 0.00 5.14
2219 6614 1.472728 CGAGTAATTTGGACGGGAGGG 60.473 57.143 0.00 0.00 0.00 4.30
2220 6615 1.835531 GAGTAATTTGGACGGGAGGGA 59.164 52.381 0.00 0.00 0.00 4.20
2249 6913 1.691434 GATCCTTGCTAGGTCCCTCAG 59.309 57.143 14.12 0.00 42.60 3.35
2261 6925 7.092623 TGCTAGGTCCCTCAGAAAACAAATATA 60.093 37.037 0.00 0.00 0.00 0.86
2262 6926 7.939588 GCTAGGTCCCTCAGAAAACAAATATAT 59.060 37.037 0.00 0.00 0.00 0.86
2313 6977 7.164122 AGATAATTGTGCTCGGATATCATTGT 58.836 34.615 4.83 0.00 0.00 2.71
2314 6978 5.679734 AATTGTGCTCGGATATCATTGTC 57.320 39.130 4.83 0.00 0.00 3.18
2410 7408 5.064071 GTGCTCTTCCACTTCATAAAGTAGC 59.936 44.000 0.00 0.00 43.99 3.58
2433 7431 5.572896 GCAGTAATTGACCTTTTGTATGTGC 59.427 40.000 0.00 0.00 0.00 4.57
2442 7440 4.518970 ACCTTTTGTATGTGCGTGAAATCT 59.481 37.500 0.00 0.00 0.00 2.40
2445 7443 7.094377 ACCTTTTGTATGTGCGTGAAATCTTAT 60.094 33.333 0.00 0.00 0.00 1.73
2452 7450 9.586150 GTATGTGCGTGAAATCTTATAATTCTG 57.414 33.333 0.00 0.00 0.00 3.02
2453 7451 7.841915 TGTGCGTGAAATCTTATAATTCTGA 57.158 32.000 0.00 0.00 0.00 3.27
2454 7452 7.909267 TGTGCGTGAAATCTTATAATTCTGAG 58.091 34.615 0.00 0.00 0.00 3.35
2455 7453 7.011389 TGTGCGTGAAATCTTATAATTCTGAGG 59.989 37.037 0.00 0.00 0.00 3.86
2456 7454 7.011482 GTGCGTGAAATCTTATAATTCTGAGGT 59.989 37.037 0.00 0.00 0.00 3.85
2457 7455 7.011389 TGCGTGAAATCTTATAATTCTGAGGTG 59.989 37.037 0.00 0.00 0.00 4.00
2458 7456 7.519008 GCGTGAAATCTTATAATTCTGAGGTGG 60.519 40.741 0.00 0.00 0.00 4.61
2459 7457 7.495934 CGTGAAATCTTATAATTCTGAGGTGGT 59.504 37.037 0.00 0.00 0.00 4.16
2460 7458 8.616076 GTGAAATCTTATAATTCTGAGGTGGTG 58.384 37.037 0.00 0.00 0.00 4.17
2461 7459 8.328758 TGAAATCTTATAATTCTGAGGTGGTGT 58.671 33.333 0.00 0.00 0.00 4.16
2462 7460 9.178758 GAAATCTTATAATTCTGAGGTGGTGTT 57.821 33.333 0.00 0.00 0.00 3.32
2463 7461 9.533831 AAATCTTATAATTCTGAGGTGGTGTTT 57.466 29.630 0.00 0.00 0.00 2.83
2464 7462 7.921786 TCTTATAATTCTGAGGTGGTGTTTG 57.078 36.000 0.00 0.00 0.00 2.93
2465 7463 6.884295 TCTTATAATTCTGAGGTGGTGTTTGG 59.116 38.462 0.00 0.00 0.00 3.28
2466 7464 3.312736 AATTCTGAGGTGGTGTTTGGT 57.687 42.857 0.00 0.00 0.00 3.67
2467 7465 2.818751 TTCTGAGGTGGTGTTTGGTT 57.181 45.000 0.00 0.00 0.00 3.67
2468 7466 2.341846 TCTGAGGTGGTGTTTGGTTC 57.658 50.000 0.00 0.00 0.00 3.62
2469 7467 1.843851 TCTGAGGTGGTGTTTGGTTCT 59.156 47.619 0.00 0.00 0.00 3.01
2470 7468 2.158813 TCTGAGGTGGTGTTTGGTTCTC 60.159 50.000 0.00 0.00 0.00 2.87
2471 7469 1.843851 TGAGGTGGTGTTTGGTTCTCT 59.156 47.619 0.00 0.00 0.00 3.10
2472 7470 3.042682 TGAGGTGGTGTTTGGTTCTCTA 58.957 45.455 0.00 0.00 0.00 2.43
2473 7471 3.071023 TGAGGTGGTGTTTGGTTCTCTAG 59.929 47.826 0.00 0.00 0.00 2.43
2474 7472 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
2475 7473 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
2476 7474 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
2477 7475 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
2478 7476 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
2479 7477 5.046520 GTGGTGTTTGGTTCTCTAGTCCTAT 60.047 44.000 0.00 0.00 0.00 2.57
2480 7478 5.046591 TGGTGTTTGGTTCTCTAGTCCTATG 60.047 44.000 0.00 0.00 0.00 2.23
2481 7479 5.187186 GGTGTTTGGTTCTCTAGTCCTATGA 59.813 44.000 0.00 0.00 0.00 2.15
2482 7480 6.100668 GTGTTTGGTTCTCTAGTCCTATGAC 58.899 44.000 0.00 0.00 42.09 3.06
2496 7494 6.547930 GTCCTATGACTTTTTCTAGTCCCT 57.452 41.667 0.00 0.00 43.11 4.20
2497 7495 7.657023 GTCCTATGACTTTTTCTAGTCCCTA 57.343 40.000 0.00 0.00 43.11 3.53
2498 7496 8.075761 GTCCTATGACTTTTTCTAGTCCCTAA 57.924 38.462 0.00 0.00 43.11 2.69
2499 7497 8.198778 GTCCTATGACTTTTTCTAGTCCCTAAG 58.801 40.741 0.00 0.00 43.11 2.18
2500 7498 8.120538 TCCTATGACTTTTTCTAGTCCCTAAGA 58.879 37.037 0.00 0.00 43.11 2.10
2501 7499 8.198778 CCTATGACTTTTTCTAGTCCCTAAGAC 58.801 40.741 0.00 0.00 43.11 3.01
2553 7551 7.971183 CTTCTAAGGACTTCTAGCAAAAAGT 57.029 36.000 0.00 0.00 38.40 2.66
2554 7552 7.964604 TTCTAAGGACTTCTAGCAAAAAGTC 57.035 36.000 11.72 11.72 46.86 3.01
2559 7557 5.767816 GACTTCTAGCAAAAAGTCCCAAA 57.232 39.130 9.78 0.00 43.55 3.28
2560 7558 6.144078 GACTTCTAGCAAAAAGTCCCAAAA 57.856 37.500 9.78 0.00 43.55 2.44
2561 7559 6.538945 ACTTCTAGCAAAAAGTCCCAAAAA 57.461 33.333 0.00 0.00 29.89 1.94
2562 7560 6.573434 ACTTCTAGCAAAAAGTCCCAAAAAG 58.427 36.000 0.00 0.00 29.89 2.27
2563 7561 6.154534 ACTTCTAGCAAAAAGTCCCAAAAAGT 59.845 34.615 0.00 0.00 29.89 2.66
2564 7562 6.144078 TCTAGCAAAAAGTCCCAAAAAGTC 57.856 37.500 0.00 0.00 0.00 3.01
2565 7563 4.137116 AGCAAAAAGTCCCAAAAAGTCC 57.863 40.909 0.00 0.00 0.00 3.85
2566 7564 3.118408 AGCAAAAAGTCCCAAAAAGTCCC 60.118 43.478 0.00 0.00 0.00 4.46
2567 7565 3.369997 GCAAAAAGTCCCAAAAAGTCCCA 60.370 43.478 0.00 0.00 0.00 4.37
2568 7566 4.188462 CAAAAAGTCCCAAAAAGTCCCAC 58.812 43.478 0.00 0.00 0.00 4.61
2569 7567 2.082140 AAGTCCCAAAAAGTCCCACC 57.918 50.000 0.00 0.00 0.00 4.61
2570 7568 0.187606 AGTCCCAAAAAGTCCCACCC 59.812 55.000 0.00 0.00 0.00 4.61
2571 7569 0.187606 GTCCCAAAAAGTCCCACCCT 59.812 55.000 0.00 0.00 0.00 4.34
2572 7570 0.187361 TCCCAAAAAGTCCCACCCTG 59.813 55.000 0.00 0.00 0.00 4.45
2573 7571 0.105709 CCCAAAAAGTCCCACCCTGT 60.106 55.000 0.00 0.00 0.00 4.00
2574 7572 1.691163 CCCAAAAAGTCCCACCCTGTT 60.691 52.381 0.00 0.00 0.00 3.16
2575 7573 2.115427 CCAAAAAGTCCCACCCTGTTT 58.885 47.619 0.00 0.00 0.00 2.83
2576 7574 2.158971 CCAAAAAGTCCCACCCTGTTTG 60.159 50.000 0.00 0.00 37.04 2.93
2577 7575 1.788229 AAAAGTCCCACCCTGTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
2578 7576 0.634465 AAAGTCCCACCCTGTTTGGT 59.366 50.000 0.00 0.00 39.96 3.67
2579 7577 0.634465 AAGTCCCACCCTGTTTGGTT 59.366 50.000 0.00 0.00 36.12 3.67
2580 7578 0.634465 AGTCCCACCCTGTTTGGTTT 59.366 50.000 0.00 0.00 36.12 3.27
2581 7579 0.750249 GTCCCACCCTGTTTGGTTTG 59.250 55.000 0.00 0.00 36.12 2.93
2582 7580 1.045911 TCCCACCCTGTTTGGTTTGC 61.046 55.000 0.00 0.00 36.12 3.68
2583 7581 1.048160 CCCACCCTGTTTGGTTTGCT 61.048 55.000 0.00 0.00 36.12 3.91
2584 7582 1.698506 CCACCCTGTTTGGTTTGCTA 58.301 50.000 0.00 0.00 36.12 3.49
2585 7583 1.613437 CCACCCTGTTTGGTTTGCTAG 59.387 52.381 0.00 0.00 36.12 3.42
2586 7584 1.613437 CACCCTGTTTGGTTTGCTAGG 59.387 52.381 0.00 0.00 36.12 3.02
2587 7585 1.256812 CCCTGTTTGGTTTGCTAGGG 58.743 55.000 0.00 0.00 38.96 3.53
2588 7586 1.203001 CCCTGTTTGGTTTGCTAGGGA 60.203 52.381 0.00 0.00 46.19 4.20
2589 7587 1.886542 CCTGTTTGGTTTGCTAGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
2590 7588 2.489073 CCTGTTTGGTTTGCTAGGGACT 60.489 50.000 0.00 0.00 46.37 3.85
2591 7589 3.222603 CTGTTTGGTTTGCTAGGGACTT 58.777 45.455 0.00 0.00 41.75 3.01
2592 7590 3.636764 CTGTTTGGTTTGCTAGGGACTTT 59.363 43.478 0.00 0.00 41.75 2.66
2593 7591 4.027437 TGTTTGGTTTGCTAGGGACTTTT 58.973 39.130 0.00 0.00 41.75 2.27
2594 7592 4.468153 TGTTTGGTTTGCTAGGGACTTTTT 59.532 37.500 0.00 0.00 41.75 1.94
2595 7593 4.929819 TTGGTTTGCTAGGGACTTTTTC 57.070 40.909 0.00 0.00 41.75 2.29
2596 7594 4.178956 TGGTTTGCTAGGGACTTTTTCT 57.821 40.909 0.00 0.00 41.75 2.52
2597 7595 5.313280 TGGTTTGCTAGGGACTTTTTCTA 57.687 39.130 0.00 0.00 41.75 2.10
2598 7596 5.697067 TGGTTTGCTAGGGACTTTTTCTAA 58.303 37.500 0.00 0.00 41.75 2.10
2599 7597 6.311735 TGGTTTGCTAGGGACTTTTTCTAAT 58.688 36.000 0.00 0.00 41.75 1.73
2600 7598 6.433093 TGGTTTGCTAGGGACTTTTTCTAATC 59.567 38.462 0.00 0.00 41.75 1.75
2601 7599 6.127703 GGTTTGCTAGGGACTTTTTCTAATCC 60.128 42.308 0.00 0.00 41.75 3.01
2609 7607 6.399639 GGACTTTTTCTAATCCCAACACAA 57.600 37.500 0.00 0.00 0.00 3.33
2610 7608 6.811954 GGACTTTTTCTAATCCCAACACAAA 58.188 36.000 0.00 0.00 0.00 2.83
2611 7609 7.269316 GGACTTTTTCTAATCCCAACACAAAA 58.731 34.615 0.00 0.00 0.00 2.44
2612 7610 7.766738 GGACTTTTTCTAATCCCAACACAAAAA 59.233 33.333 0.00 0.00 0.00 1.94
2630 7628 2.838637 AAAGTCCCTGGAACCAAACA 57.161 45.000 0.00 0.00 0.00 2.83
2631 7629 2.067365 AAGTCCCTGGAACCAAACAC 57.933 50.000 0.00 0.00 0.00 3.32
2632 7630 0.185175 AGTCCCTGGAACCAAACACC 59.815 55.000 0.00 0.00 0.00 4.16
2633 7631 0.826256 GTCCCTGGAACCAAACACCC 60.826 60.000 0.00 0.00 0.00 4.61
2634 7632 1.533033 CCCTGGAACCAAACACCCC 60.533 63.158 0.00 0.00 0.00 4.95
2635 7633 1.533033 CCTGGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
2636 7634 1.541672 CTGGAACCAAACACCCCCT 59.458 57.895 0.00 0.00 0.00 4.79
2637 7635 0.827507 CTGGAACCAAACACCCCCTG 60.828 60.000 0.00 0.00 0.00 4.45
2692 7695 7.755822 GGATGCGATCGACTAACTTTAATATCT 59.244 37.037 21.57 0.00 0.00 1.98
2969 9363 1.917872 AGGTCCAGATCGAGCTATCC 58.082 55.000 1.25 6.37 38.79 2.59
3184 9578 6.183360 GGAACAATCCTGAAGAGTTTAATCCG 60.183 42.308 0.00 0.00 42.93 4.18
3280 9674 3.769300 GCCTTTGTCCTGGGATAACATTT 59.231 43.478 0.00 0.00 0.00 2.32
3340 9734 4.763073 TCTATCACTTTGACTGGATGCTG 58.237 43.478 0.00 0.00 0.00 4.41
3483 9877 6.636454 TTAAATCCACCATTCTGTACTCCT 57.364 37.500 0.00 0.00 0.00 3.69
3518 9912 5.280328 CGTGTGGCGTTTTTACCTTTATA 57.720 39.130 0.00 0.00 35.54 0.98
3523 9917 6.208994 TGTGGCGTTTTTACCTTTATACCAAT 59.791 34.615 0.00 0.00 0.00 3.16
3563 9957 5.822132 TCATGGAAAAATTGTTGGACCAT 57.178 34.783 0.00 0.00 37.16 3.55
3590 10025 8.507249 GCTATTTTTCATGTTACTATGGGCTAG 58.493 37.037 0.00 0.00 0.00 3.42
3591 10026 9.778741 CTATTTTTCATGTTACTATGGGCTAGA 57.221 33.333 0.00 0.00 0.00 2.43
3604 10039 8.641498 ACTATGGGCTAGATTAAATTTCATGG 57.359 34.615 0.00 0.00 0.00 3.66
3605 10040 8.227507 ACTATGGGCTAGATTAAATTTCATGGT 58.772 33.333 0.00 0.00 0.00 3.55
3606 10041 7.919385 ATGGGCTAGATTAAATTTCATGGTT 57.081 32.000 0.00 0.00 0.00 3.67
3607 10042 7.111247 TGGGCTAGATTAAATTTCATGGTTG 57.889 36.000 0.00 0.00 0.00 3.77
3608 10043 6.667414 TGGGCTAGATTAAATTTCATGGTTGT 59.333 34.615 0.00 0.00 0.00 3.32
3609 10044 7.180051 TGGGCTAGATTAAATTTCATGGTTGTT 59.820 33.333 0.00 0.00 0.00 2.83
3610 10045 7.492344 GGGCTAGATTAAATTTCATGGTTGTTG 59.508 37.037 0.00 0.00 0.00 3.33
3611 10046 8.250332 GGCTAGATTAAATTTCATGGTTGTTGA 58.750 33.333 0.00 0.00 0.00 3.18
3612 10047 9.076596 GCTAGATTAAATTTCATGGTTGTTGAC 57.923 33.333 0.00 0.00 0.00 3.18
3615 10050 8.641541 AGATTAAATTTCATGGTTGTTGACTGT 58.358 29.630 0.00 0.00 0.00 3.55
3616 10051 9.906660 GATTAAATTTCATGGTTGTTGACTGTA 57.093 29.630 0.00 0.00 0.00 2.74
3618 10053 9.689976 TTAAATTTCATGGTTGTTGACTGTATG 57.310 29.630 0.00 0.00 0.00 2.39
3619 10054 5.703978 TTTCATGGTTGTTGACTGTATGG 57.296 39.130 0.00 0.00 0.00 2.74
3620 10055 3.081061 TCATGGTTGTTGACTGTATGGC 58.919 45.455 0.00 0.00 0.00 4.40
3621 10056 2.647683 TGGTTGTTGACTGTATGGCA 57.352 45.000 0.00 0.00 0.00 4.92
3692 10173 7.338957 TGATCATGTGCCTATTTGTAATGTTCA 59.661 33.333 0.00 0.00 0.00 3.18
3710 10191 6.839124 TGTTCAGACTGAATAAATGCCATT 57.161 33.333 20.43 0.00 38.79 3.16
3752 10233 9.196552 GTACTAAAACTAACCGTACAACTCATT 57.803 33.333 0.00 0.00 32.77 2.57
3843 10324 4.955925 TTTTCGGCAATACTACATGTGG 57.044 40.909 9.11 8.41 0.00 4.17
3850 10331 4.452455 GGCAATACTACATGTGGAGTATGC 59.548 45.833 16.98 19.55 38.57 3.14
3862 10348 3.688185 GTGGAGTATGCGATATCGACCTA 59.312 47.826 28.63 13.34 43.02 3.08
3870 10356 3.119495 TGCGATATCGACCTATGATGTGG 60.119 47.826 28.63 0.00 43.02 4.17
3923 10409 1.927895 CTCTCCCCTCGTTTGAATCG 58.072 55.000 0.00 0.00 0.00 3.34
3943 10429 0.474184 AGAAGACCCACACAACCCAG 59.526 55.000 0.00 0.00 0.00 4.45
3946 10432 1.454847 GACCCACACAACCCAGCAA 60.455 57.895 0.00 0.00 0.00 3.91
3962 10448 3.495753 CCAGCAAAAATTCAAGCTCAACC 59.504 43.478 0.00 0.00 34.61 3.77
3967 10453 7.118680 CAGCAAAAATTCAAGCTCAACCATTAT 59.881 33.333 0.00 0.00 34.61 1.28
4007 10493 1.268335 ACGGCACAACGAATCAACAAC 60.268 47.619 0.00 0.00 37.61 3.32
4011 10497 3.972502 GGCACAACGAATCAACAACTAAC 59.027 43.478 0.00 0.00 0.00 2.34
4076 10564 4.141846 ACACAGCTAATGTCTCAATCGGAT 60.142 41.667 0.00 0.00 41.41 4.18
4133 10622 2.032799 TCAGAAAACCACACACGATTGC 59.967 45.455 0.00 0.00 0.00 3.56
4137 10626 2.192664 AACCACACACGATTGCCATA 57.807 45.000 0.00 0.00 0.00 2.74
4138 10627 1.737838 ACCACACACGATTGCCATAG 58.262 50.000 0.00 0.00 0.00 2.23
4142 10631 0.659427 CACACGATTGCCATAGCCAG 59.341 55.000 0.00 0.00 38.69 4.85
4144 10633 1.096967 CACGATTGCCATAGCCAGCA 61.097 55.000 0.00 0.00 38.69 4.41
4183 10672 6.177610 TGGGGTAGTCAATTACACAAGATTC 58.822 40.000 0.00 0.00 0.00 2.52
4251 10740 2.431057 AGAATCGTGTGGGATGACCTAC 59.569 50.000 0.00 0.00 45.94 3.18
4252 10741 1.120530 ATCGTGTGGGATGACCTACC 58.879 55.000 0.00 0.00 45.30 3.18
4253 10742 0.251877 TCGTGTGGGATGACCTACCA 60.252 55.000 0.00 0.00 45.30 3.25
4254 10743 0.175760 CGTGTGGGATGACCTACCAG 59.824 60.000 0.00 0.00 45.30 4.00
4255 10744 0.541863 GTGTGGGATGACCTACCAGG 59.458 60.000 0.00 0.00 45.30 4.45
4256 10745 1.271840 TGTGGGATGACCTACCAGGC 61.272 60.000 0.00 0.00 45.30 4.85
4257 10746 0.983378 GTGGGATGACCTACCAGGCT 60.983 60.000 0.00 0.00 41.00 4.58
4258 10747 0.639943 TGGGATGACCTACCAGGCTA 59.360 55.000 0.00 0.00 39.63 3.93
4259 10748 1.049402 GGGATGACCTACCAGGCTAC 58.951 60.000 0.00 0.00 39.63 3.58
4288 10777 6.206634 TCAAACATGGTTTCTCTATTCCACAC 59.793 38.462 0.00 0.00 32.60 3.82
4311 10800 1.301401 GTGCTTGGGTGTAGTCGCA 60.301 57.895 0.00 0.00 0.00 5.10
4318 10807 3.932289 GTGTAGTCGCACACGCTT 58.068 55.556 0.12 0.00 39.47 4.68
4320 10809 0.937699 GTGTAGTCGCACACGCTTCA 60.938 55.000 0.12 0.00 39.47 3.02
4374 10863 8.722342 TTATCGCAAATGTTTAGTTTGAACTC 57.278 30.769 0.00 0.00 40.37 3.01
4379 10868 7.167302 CGCAAATGTTTAGTTTGAACTCAATCA 59.833 33.333 0.00 0.00 40.37 2.57
4390 10879 7.915397 AGTTTGAACTCAATCATGTGTGTTTAC 59.085 33.333 5.55 5.34 35.84 2.01
4392 10881 6.958255 TGAACTCAATCATGTGTGTTTACAG 58.042 36.000 5.55 0.00 37.52 2.74
4401 10890 4.300189 TGTGTGTTTACAGAACCATTGC 57.700 40.909 0.00 0.00 37.52 3.56
4406 10895 1.598882 TTACAGAACCATTGCGCACA 58.401 45.000 11.12 1.31 0.00 4.57
4453 10942 0.673437 GCCTTTGCACCAGCTACAAA 59.327 50.000 0.00 0.00 42.74 2.83
4484 10973 2.470983 TCAAGAACACGCATCATCCA 57.529 45.000 0.00 0.00 0.00 3.41
4488 10977 3.827008 AGAACACGCATCATCCAGTAT 57.173 42.857 0.00 0.00 0.00 2.12
4508 10997 9.655769 CCAGTATCAAATCTCAATTGTATTTCG 57.344 33.333 14.51 11.64 0.00 3.46
4536 11026 7.994425 TTTCACATGTCATACACCAAGTATT 57.006 32.000 0.00 0.00 41.47 1.89
4601 11091 9.394477 GTGAAAGATACACAAATGTAGGAAAAC 57.606 33.333 0.00 0.00 44.51 2.43
4605 11095 8.691661 AGATACACAAATGTAGGAAAACAGTT 57.308 30.769 0.00 0.00 44.51 3.16
4606 11096 9.131791 AGATACACAAATGTAGGAAAACAGTTT 57.868 29.630 0.00 0.00 44.51 2.66
4607 11097 9.744468 GATACACAAATGTAGGAAAACAGTTTT 57.256 29.630 11.22 11.22 44.51 2.43
4609 11099 8.474006 ACACAAATGTAGGAAAACAGTTTTTC 57.526 30.769 12.62 10.72 42.51 2.29
4610 11100 8.311109 ACACAAATGTAGGAAAACAGTTTTTCT 58.689 29.630 21.17 21.17 42.66 2.52
4611 11101 9.150348 CACAAATGTAGGAAAACAGTTTTTCTT 57.850 29.630 22.35 10.75 46.80 2.52
4612 11102 9.150348 ACAAATGTAGGAAAACAGTTTTTCTTG 57.850 29.630 22.35 16.45 46.80 3.02
4613 11103 9.364989 CAAATGTAGGAAAACAGTTTTTCTTGA 57.635 29.630 22.35 11.33 46.80 3.02
4616 11106 8.925161 TGTAGGAAAACAGTTTTTCTTGATTG 57.075 30.769 22.35 0.00 46.80 2.67
4617 11107 6.908870 AGGAAAACAGTTTTTCTTGATTGC 57.091 33.333 13.22 0.00 46.80 3.56
4618 11108 6.405538 AGGAAAACAGTTTTTCTTGATTGCA 58.594 32.000 13.22 0.00 46.80 4.08
4619 11109 7.049754 AGGAAAACAGTTTTTCTTGATTGCAT 58.950 30.769 13.22 0.00 46.80 3.96
4620 11110 7.225341 AGGAAAACAGTTTTTCTTGATTGCATC 59.775 33.333 13.22 0.00 46.80 3.91
4621 11111 7.225341 GGAAAACAGTTTTTCTTGATTGCATCT 59.775 33.333 12.62 0.00 46.80 2.90
4622 11112 8.496707 AAAACAGTTTTTCTTGATTGCATCTT 57.503 26.923 5.37 0.00 27.97 2.40
4623 11113 8.496707 AAACAGTTTTTCTTGATTGCATCTTT 57.503 26.923 0.00 0.00 0.00 2.52
4624 11114 9.598517 AAACAGTTTTTCTTGATTGCATCTTTA 57.401 25.926 0.00 0.00 0.00 1.85
4625 11115 8.579682 ACAGTTTTTCTTGATTGCATCTTTAC 57.420 30.769 0.00 0.00 0.00 2.01
4626 11116 7.653311 ACAGTTTTTCTTGATTGCATCTTTACC 59.347 33.333 0.00 0.00 0.00 2.85
4627 11117 7.869429 CAGTTTTTCTTGATTGCATCTTTACCT 59.131 33.333 0.00 0.00 0.00 3.08
4628 11118 8.084684 AGTTTTTCTTGATTGCATCTTTACCTC 58.915 33.333 0.00 0.00 0.00 3.85
4629 11119 7.765695 TTTTCTTGATTGCATCTTTACCTCT 57.234 32.000 0.00 0.00 0.00 3.69
4630 11120 6.748333 TTCTTGATTGCATCTTTACCTCTG 57.252 37.500 0.00 0.00 0.00 3.35
4631 11121 5.809001 TCTTGATTGCATCTTTACCTCTGT 58.191 37.500 0.00 0.00 0.00 3.41
4632 11122 5.645067 TCTTGATTGCATCTTTACCTCTGTG 59.355 40.000 0.00 0.00 0.00 3.66
4633 11123 5.164620 TGATTGCATCTTTACCTCTGTGA 57.835 39.130 0.00 0.00 0.00 3.58
4634 11124 4.937620 TGATTGCATCTTTACCTCTGTGAC 59.062 41.667 0.00 0.00 0.00 3.67
4635 11125 4.350368 TTGCATCTTTACCTCTGTGACA 57.650 40.909 0.00 0.00 0.00 3.58
4636 11126 4.350368 TGCATCTTTACCTCTGTGACAA 57.650 40.909 0.00 0.00 0.00 3.18
4637 11127 4.713553 TGCATCTTTACCTCTGTGACAAA 58.286 39.130 0.00 0.00 0.00 2.83
4638 11128 5.129634 TGCATCTTTACCTCTGTGACAAAA 58.870 37.500 0.00 0.00 0.00 2.44
4639 11129 5.239306 TGCATCTTTACCTCTGTGACAAAAG 59.761 40.000 1.34 1.34 0.00 2.27
4640 11130 5.335191 GCATCTTTACCTCTGTGACAAAAGG 60.335 44.000 11.06 11.06 34.94 3.11
4641 11131 5.367945 TCTTTACCTCTGTGACAAAAGGT 57.632 39.130 19.41 19.41 44.24 3.50
4642 11132 6.488769 TCTTTACCTCTGTGACAAAAGGTA 57.511 37.500 17.77 17.77 42.13 3.08
4643 11133 7.074653 TCTTTACCTCTGTGACAAAAGGTAT 57.925 36.000 20.70 5.20 42.42 2.73
4644 11134 6.934645 TCTTTACCTCTGTGACAAAAGGTATG 59.065 38.462 20.70 17.13 42.42 2.39
4645 11135 4.706842 ACCTCTGTGACAAAAGGTATGT 57.293 40.909 15.43 0.00 40.33 2.29
4646 11136 5.048846 ACCTCTGTGACAAAAGGTATGTT 57.951 39.130 15.43 0.00 40.33 2.71
4647 11137 5.063880 ACCTCTGTGACAAAAGGTATGTTC 58.936 41.667 15.43 0.00 40.33 3.18
4648 11138 4.455877 CCTCTGTGACAAAAGGTATGTTCC 59.544 45.833 5.70 0.00 0.00 3.62
4649 11139 5.042463 TCTGTGACAAAAGGTATGTTCCA 57.958 39.130 0.00 0.00 0.00 3.53
4650 11140 5.441500 TCTGTGACAAAAGGTATGTTCCAA 58.558 37.500 0.00 0.00 0.00 3.53
4651 11141 5.888724 TCTGTGACAAAAGGTATGTTCCAAA 59.111 36.000 0.00 0.00 0.00 3.28
4652 11142 6.039270 TCTGTGACAAAAGGTATGTTCCAAAG 59.961 38.462 0.00 0.00 0.00 2.77
4653 11143 5.068460 TGTGACAAAAGGTATGTTCCAAAGG 59.932 40.000 0.00 0.00 0.00 3.11
4654 11144 4.586841 TGACAAAAGGTATGTTCCAAAGGG 59.413 41.667 0.00 0.00 0.00 3.95
4655 11145 4.552674 ACAAAAGGTATGTTCCAAAGGGT 58.447 39.130 0.00 0.00 34.93 4.34
4656 11146 4.966168 ACAAAAGGTATGTTCCAAAGGGTT 59.034 37.500 0.00 0.00 34.93 4.11
4657 11147 5.069914 ACAAAAGGTATGTTCCAAAGGGTTC 59.930 40.000 0.00 0.00 34.93 3.62
4658 11148 4.463050 AAGGTATGTTCCAAAGGGTTCA 57.537 40.909 0.00 0.00 34.93 3.18
4659 11149 4.675063 AGGTATGTTCCAAAGGGTTCAT 57.325 40.909 0.00 0.00 34.74 2.57
4660 11150 5.789574 AGGTATGTTCCAAAGGGTTCATA 57.210 39.130 0.00 0.00 33.41 2.15
4661 11151 6.341408 AGGTATGTTCCAAAGGGTTCATAT 57.659 37.500 0.00 0.00 35.32 1.78
4662 11152 7.460214 AGGTATGTTCCAAAGGGTTCATATA 57.540 36.000 0.00 0.00 35.32 0.86
4663 11153 7.878495 AGGTATGTTCCAAAGGGTTCATATAA 58.122 34.615 0.00 0.00 35.32 0.98
4664 11154 7.998964 AGGTATGTTCCAAAGGGTTCATATAAG 59.001 37.037 0.00 0.00 35.32 1.73
4665 11155 7.230712 GGTATGTTCCAAAGGGTTCATATAAGG 59.769 40.741 0.00 0.00 35.32 2.69
4666 11156 6.395780 TGTTCCAAAGGGTTCATATAAGGA 57.604 37.500 0.00 0.00 34.93 3.36
4667 11157 6.795590 TGTTCCAAAGGGTTCATATAAGGAA 58.204 36.000 0.00 0.00 34.93 3.36
4668 11158 7.418378 TGTTCCAAAGGGTTCATATAAGGAAT 58.582 34.615 0.00 0.00 35.37 3.01
4669 11159 7.341769 TGTTCCAAAGGGTTCATATAAGGAATG 59.658 37.037 0.00 0.00 35.37 2.67
4670 11160 6.980577 TCCAAAGGGTTCATATAAGGAATGT 58.019 36.000 0.00 0.00 34.93 2.71
4671 11161 6.833416 TCCAAAGGGTTCATATAAGGAATGTG 59.167 38.462 0.00 0.00 34.93 3.21
4672 11162 6.040842 CCAAAGGGTTCATATAAGGAATGTGG 59.959 42.308 0.00 0.00 0.00 4.17
4673 11163 6.590656 AAGGGTTCATATAAGGAATGTGGA 57.409 37.500 0.00 0.00 0.00 4.02
4674 11164 5.941788 AGGGTTCATATAAGGAATGTGGAC 58.058 41.667 0.00 0.00 35.07 4.02
4675 11165 5.431731 AGGGTTCATATAAGGAATGTGGACA 59.568 40.000 0.00 0.00 37.02 4.02
4676 11166 6.103205 AGGGTTCATATAAGGAATGTGGACAT 59.897 38.462 0.00 0.00 37.02 3.06
4678 11168 7.287696 GGGTTCATATAAGGAATGTGGACATTT 59.712 37.037 6.46 0.00 45.72 2.32
4679 11169 8.352942 GGTTCATATAAGGAATGTGGACATTTC 58.647 37.037 6.46 4.67 45.72 2.17
4689 11179 2.455674 TGGACATTTCTCCACACTCG 57.544 50.000 0.00 0.00 35.23 4.18
4690 11180 1.967779 TGGACATTTCTCCACACTCGA 59.032 47.619 0.00 0.00 35.23 4.04
4691 11181 2.567169 TGGACATTTCTCCACACTCGAT 59.433 45.455 0.00 0.00 35.23 3.59
4692 11182 3.190874 GGACATTTCTCCACACTCGATC 58.809 50.000 0.00 0.00 0.00 3.69
4693 11183 3.368427 GGACATTTCTCCACACTCGATCA 60.368 47.826 0.00 0.00 0.00 2.92
4694 11184 3.854666 ACATTTCTCCACACTCGATCAG 58.145 45.455 0.00 0.00 0.00 2.90
4695 11185 2.370281 TTTCTCCACACTCGATCAGC 57.630 50.000 0.00 0.00 0.00 4.26
4696 11186 1.256812 TTCTCCACACTCGATCAGCA 58.743 50.000 0.00 0.00 0.00 4.41
4697 11187 0.528017 TCTCCACACTCGATCAGCAC 59.472 55.000 0.00 0.00 0.00 4.40
4698 11188 0.529833 CTCCACACTCGATCAGCACT 59.470 55.000 0.00 0.00 0.00 4.40
4699 11189 0.244721 TCCACACTCGATCAGCACTG 59.755 55.000 0.00 0.00 0.00 3.66
4700 11190 0.037882 CCACACTCGATCAGCACTGT 60.038 55.000 0.00 0.00 0.00 3.55
4701 11191 1.344458 CACACTCGATCAGCACTGTC 58.656 55.000 0.00 0.00 0.00 3.51
4702 11192 0.109551 ACACTCGATCAGCACTGTCG 60.110 55.000 13.08 13.08 36.33 4.35
4703 11193 0.109551 CACTCGATCAGCACTGTCGT 60.110 55.000 16.50 3.00 36.37 4.34
4704 11194 0.109551 ACTCGATCAGCACTGTCGTG 60.110 55.000 16.50 16.24 44.07 4.35
4712 11202 2.633657 CACTGTCGTGCACAAGCC 59.366 61.111 18.64 1.29 41.13 4.35
4713 11203 2.967076 ACTGTCGTGCACAAGCCG 60.967 61.111 18.64 1.94 41.13 5.52
4714 11204 4.374702 CTGTCGTGCACAAGCCGC 62.375 66.667 18.64 0.22 41.13 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.788766 GTTGGCGGCAGCTGTACG 61.789 66.667 22.84 22.84 44.37 3.67
2 3 3.788766 CGTTGGCGGCAGCTGTAC 61.789 66.667 22.69 12.08 44.37 2.90
5 6 3.932580 TACTCGTTGGCGGCAGCTG 62.933 63.158 22.69 10.11 44.37 4.24
8 9 3.188786 GCTACTCGTTGGCGGCAG 61.189 66.667 12.87 2.62 38.89 4.85
9 10 3.642778 GAGCTACTCGTTGGCGGCA 62.643 63.158 7.97 7.97 38.89 5.69
10 11 2.886124 GAGCTACTCGTTGGCGGC 60.886 66.667 0.00 0.00 38.89 6.53
13 14 2.202756 CGGGAGCTACTCGTTGGC 60.203 66.667 0.00 0.00 37.75 4.52
58 59 3.726517 CAACGTGAAGGCCAGCGG 61.727 66.667 5.01 0.00 0.00 5.52
59 60 2.034879 ATCAACGTGAAGGCCAGCG 61.035 57.895 5.01 6.09 0.00 5.18
60 61 1.237285 ACATCAACGTGAAGGCCAGC 61.237 55.000 5.01 0.00 0.00 4.85
61 62 1.732259 GTACATCAACGTGAAGGCCAG 59.268 52.381 5.01 0.00 0.00 4.85
63 64 1.732259 CAGTACATCAACGTGAAGGCC 59.268 52.381 0.00 0.00 0.00 5.19
64 65 1.128692 GCAGTACATCAACGTGAAGGC 59.871 52.381 0.00 0.00 0.00 4.35
65 66 1.390123 CGCAGTACATCAACGTGAAGG 59.610 52.381 0.00 0.00 0.00 3.46
66 67 1.201812 GCGCAGTACATCAACGTGAAG 60.202 52.381 0.30 0.00 0.00 3.02
67 68 0.787787 GCGCAGTACATCAACGTGAA 59.212 50.000 0.30 0.00 0.00 3.18
69 70 1.419922 GGCGCAGTACATCAACGTG 59.580 57.895 10.83 0.00 0.00 4.49
71 72 1.623081 AACGGCGCAGTACATCAACG 61.623 55.000 15.00 3.48 0.00 4.10
74 2999 1.011968 GTGAACGGCGCAGTACATCA 61.012 55.000 15.00 11.58 0.00 3.07
108 3033 2.813908 GGCCGCACGTTGACTAGG 60.814 66.667 0.00 0.00 0.00 3.02
109 3034 1.805945 GAGGCCGCACGTTGACTAG 60.806 63.158 0.00 0.00 0.00 2.57
111 3036 4.681978 GGAGGCCGCACGTTGACT 62.682 66.667 9.31 0.00 0.00 3.41
132 3057 3.802418 AACGTGGTGCTCGGTGACC 62.802 63.158 0.00 0.00 0.00 4.02
140 3065 0.673644 GGCTATCACAACGTGGTGCT 60.674 55.000 18.67 11.60 38.66 4.40
142 3067 0.796312 GTGGCTATCACAACGTGGTG 59.204 55.000 17.39 17.39 45.39 4.17
147 3072 0.442310 CCAACGTGGCTATCACAACG 59.558 55.000 0.00 0.00 46.36 4.10
173 3112 0.590230 GCTGCTAGCGTCTGAGTACG 60.590 60.000 10.77 0.00 45.58 3.67
174 3113 0.248702 GGCTGCTAGCGTCTGAGTAC 60.249 60.000 10.77 0.00 43.62 2.73
176 3115 1.979155 TGGCTGCTAGCGTCTGAGT 60.979 57.895 10.77 0.00 43.62 3.41
180 3119 2.219325 GACTGTGGCTGCTAGCGTCT 62.219 60.000 10.77 0.00 43.62 4.18
181 3120 1.807573 GACTGTGGCTGCTAGCGTC 60.808 63.158 10.77 7.22 43.62 5.19
182 3121 2.262915 GACTGTGGCTGCTAGCGT 59.737 61.111 10.77 0.00 43.62 5.07
183 3122 1.808799 CTGACTGTGGCTGCTAGCG 60.809 63.158 10.77 6.22 43.62 4.26
184 3123 2.105466 GCTGACTGTGGCTGCTAGC 61.105 63.158 8.10 8.10 41.46 3.42
185 3124 1.808799 CGCTGACTGTGGCTGCTAG 60.809 63.158 0.00 0.00 0.00 3.42
243 3182 2.355837 TGAGCTCGTTCCACGCAC 60.356 61.111 9.64 0.00 42.21 5.34
257 3196 4.767255 GTGAGCCCTGCCCGTGAG 62.767 72.222 0.00 0.00 0.00 3.51
288 3239 3.203412 CTACTCTCTCCGCCGCGT 61.203 66.667 12.58 0.00 0.00 6.01
303 3254 2.057830 CCATGGATGCCCGTAGCTA 58.942 57.895 5.56 0.00 44.23 3.32
323 3274 3.706373 GCGGGAAGGTCTGGAGCA 61.706 66.667 2.67 0.00 0.00 4.26
342 3293 4.324991 ACCTTTCCGTGGACCGCC 62.325 66.667 0.00 0.00 34.38 6.13
350 3301 2.207924 AGCTCGTCCACCTTTCCGT 61.208 57.895 0.00 0.00 0.00 4.69
351 3302 1.738099 CAGCTCGTCCACCTTTCCG 60.738 63.158 0.00 0.00 0.00 4.30
352 3303 2.035442 GCAGCTCGTCCACCTTTCC 61.035 63.158 0.00 0.00 0.00 3.13
353 3304 1.004440 AGCAGCTCGTCCACCTTTC 60.004 57.895 0.00 0.00 0.00 2.62
354 3305 1.302033 CAGCAGCTCGTCCACCTTT 60.302 57.895 0.00 0.00 0.00 3.11
403 3357 2.190161 GAACAACTTTTGGGCGTGAAC 58.810 47.619 0.00 0.00 34.12 3.18
408 3362 0.934436 CAGCGAACAACTTTTGGGCG 60.934 55.000 0.00 0.00 35.42 6.13
425 3379 2.229784 GTCTTCCAACAGGGCATTTCAG 59.770 50.000 0.00 0.00 36.21 3.02
426 3380 2.238521 GTCTTCCAACAGGGCATTTCA 58.761 47.619 0.00 0.00 36.21 2.69
435 3389 2.509052 TCACGTCTGTCTTCCAACAG 57.491 50.000 0.00 0.00 46.54 3.16
436 3390 2.429250 TCTTCACGTCTGTCTTCCAACA 59.571 45.455 0.00 0.00 0.00 3.33
437 3391 3.093717 TCTTCACGTCTGTCTTCCAAC 57.906 47.619 0.00 0.00 0.00 3.77
441 3395 4.619336 GTCATCTTCTTCACGTCTGTCTTC 59.381 45.833 0.00 0.00 0.00 2.87
485 3439 0.040058 AGCAAATGAGATGTGGGCCA 59.960 50.000 0.00 0.00 0.00 5.36
487 3441 2.368439 TGTAGCAAATGAGATGTGGGC 58.632 47.619 0.00 0.00 0.00 5.36
504 3458 3.627395 ATTCTTTGACCGGCTGATGTA 57.373 42.857 0.00 0.00 0.00 2.29
521 3475 2.991190 TGACGTAGCGAAGACCAAATTC 59.009 45.455 0.00 0.00 0.00 2.17
524 3478 1.933500 GCTGACGTAGCGAAGACCAAA 60.934 52.381 0.00 0.00 43.63 3.28
553 3507 1.892209 AAACTGACAAGTTAGCCCCG 58.108 50.000 0.00 0.00 46.15 5.73
573 3527 6.989759 TGTCTGATAAGCTCACAAAAACAGTA 59.010 34.615 0.00 0.00 0.00 2.74
574 3528 5.822519 TGTCTGATAAGCTCACAAAAACAGT 59.177 36.000 0.00 0.00 0.00 3.55
583 3537 4.033817 GCACTGATTGTCTGATAAGCTCAC 59.966 45.833 4.13 0.00 0.00 3.51
584 3538 4.081254 AGCACTGATTGTCTGATAAGCTCA 60.081 41.667 4.13 0.00 0.00 4.26
605 3559 4.980434 TGCGTTTAATCTATAACGGAGAGC 59.020 41.667 9.08 0.00 45.24 4.09
652 3612 5.001232 ACAACTTGATACCGTATTTGTGCT 58.999 37.500 5.80 0.00 0.00 4.40
662 3622 3.802685 GCTAGGCTAACAACTTGATACCG 59.197 47.826 0.00 0.00 0.00 4.02
678 3638 4.130286 ACACAATTGAGACTAGCTAGGC 57.870 45.455 24.35 22.21 0.00 3.93
687 3647 9.820229 TGAATTTAATACGAACACAATTGAGAC 57.180 29.630 13.59 3.88 0.00 3.36
737 4179 8.027440 TGTGGAAAATTGAGAAAACAAACTTG 57.973 30.769 0.00 0.00 33.44 3.16
744 4186 5.276348 CGTTGCTGTGGAAAATTGAGAAAAC 60.276 40.000 0.00 0.00 0.00 2.43
751 4193 0.777631 CGCGTTGCTGTGGAAAATTG 59.222 50.000 0.00 0.00 0.00 2.32
806 4249 9.973246 GCAATACCATATCACGTTAATATCAAG 57.027 33.333 0.00 0.00 0.00 3.02
826 4302 2.936202 AGTGGATGGACATGGCAATAC 58.064 47.619 0.00 0.00 0.00 1.89
847 4323 2.135139 CTGCTTTGTCGCTGTTAGACA 58.865 47.619 0.00 0.00 45.68 3.41
849 4325 2.135139 CACTGCTTTGTCGCTGTTAGA 58.865 47.619 0.00 0.00 39.59 2.10
865 4341 1.527611 ATGATCATGGCCGCCACTG 60.528 57.895 16.16 14.11 35.80 3.66
869 4345 0.890542 TTAGCATGATCATGGCCGCC 60.891 55.000 31.62 17.47 39.16 6.13
935 4411 9.401873 TGTGCAATATAATATCACGTACAGTAC 57.598 33.333 0.00 0.00 0.00 2.73
937 4413 9.140286 GATGTGCAATATAATATCACGTACAGT 57.860 33.333 0.00 0.00 0.00 3.55
938 4414 9.139174 TGATGTGCAATATAATATCACGTACAG 57.861 33.333 0.00 0.00 0.00 2.74
939 4415 9.482627 TTGATGTGCAATATAATATCACGTACA 57.517 29.630 0.00 0.00 0.00 2.90
940 4416 9.741168 GTTGATGTGCAATATAATATCACGTAC 57.259 33.333 0.00 0.00 39.03 3.67
941 4417 9.705290 AGTTGATGTGCAATATAATATCACGTA 57.295 29.630 0.00 0.00 39.03 3.57
951 4427 4.576053 GCTGGTGAGTTGATGTGCAATATA 59.424 41.667 0.00 0.00 39.03 0.86
1240 5325 1.296392 CGGGAGGATGCTGACAACA 59.704 57.895 0.00 0.00 32.79 3.33
1243 5328 3.002583 TGCGGGAGGATGCTGACA 61.003 61.111 0.00 0.00 32.79 3.58
1355 5443 0.178998 CCCTTCATCATCTGCCCCAG 60.179 60.000 0.00 0.00 0.00 4.45
1374 5462 0.946221 CACGAACTGGAGGTCACTGC 60.946 60.000 0.00 0.00 35.33 4.40
1378 5466 0.391597 GGTTCACGAACTGGAGGTCA 59.608 55.000 9.63 0.00 40.94 4.02
1495 5583 1.903294 GCTGAGGAGCTCCATGACA 59.097 57.895 33.90 23.80 42.52 3.58
1572 5660 1.079543 GCTGACGCTGTCATGGAGT 60.080 57.895 10.93 0.00 41.94 3.85
2062 6268 8.778358 ACTGATTTCTTAATTAAGATGCGATCC 58.222 33.333 24.84 12.43 41.52 3.36
2066 6272 8.540492 ACGTACTGATTTCTTAATTAAGATGCG 58.460 33.333 24.84 23.29 41.52 4.73
2086 6292 2.161808 CGTGATTCTGTCCAGACGTACT 59.838 50.000 0.00 0.00 37.14 2.73
2106 6312 3.785486 TGAAAGGAGTACATCAGATGCG 58.215 45.455 10.59 0.00 0.00 4.73
2123 6508 4.452795 TGCGACAAGTAATTCGGAATGAAA 59.547 37.500 3.59 0.00 40.71 2.69
2125 6510 3.591023 TGCGACAAGTAATTCGGAATGA 58.409 40.909 3.59 0.00 35.73 2.57
2127 6512 3.938963 ACATGCGACAAGTAATTCGGAAT 59.061 39.130 0.00 0.00 39.13 3.01
2129 6514 2.967362 ACATGCGACAAGTAATTCGGA 58.033 42.857 0.00 0.00 40.02 4.55
2131 6516 6.986424 TCTATACATGCGACAAGTAATTCG 57.014 37.500 0.00 0.00 38.31 3.34
2132 6517 8.299262 ACATCTATACATGCGACAAGTAATTC 57.701 34.615 0.00 0.00 0.00 2.17
2135 6520 8.793592 AGATACATCTATACATGCGACAAGTAA 58.206 33.333 0.00 0.00 34.85 2.24
2177 6572 9.078990 ACTCGTCACAGAAATGGATATATCTAA 57.921 33.333 12.42 2.30 0.00 2.10
2184 6579 7.279981 CCAAATTACTCGTCACAGAAATGGATA 59.720 37.037 0.00 0.00 0.00 2.59
2192 6587 3.571571 CGTCCAAATTACTCGTCACAGA 58.428 45.455 0.00 0.00 0.00 3.41
2195 6590 1.997606 CCCGTCCAAATTACTCGTCAC 59.002 52.381 0.00 0.00 0.00 3.67
2200 6595 1.835531 TCCCTCCCGTCCAAATTACTC 59.164 52.381 0.00 0.00 0.00 2.59
2205 6600 1.273666 ACTACTCCCTCCCGTCCAAAT 60.274 52.381 0.00 0.00 0.00 2.32
2208 6603 1.002069 TAACTACTCCCTCCCGTCCA 58.998 55.000 0.00 0.00 0.00 4.02
2209 6604 1.689984 CTAACTACTCCCTCCCGTCC 58.310 60.000 0.00 0.00 0.00 4.79
2210 6605 1.213926 TCCTAACTACTCCCTCCCGTC 59.786 57.143 0.00 0.00 0.00 4.79
2211 6606 1.302907 TCCTAACTACTCCCTCCCGT 58.697 55.000 0.00 0.00 0.00 5.28
2212 6607 2.516906 GATCCTAACTACTCCCTCCCG 58.483 57.143 0.00 0.00 0.00 5.14
2213 6608 2.451659 AGGATCCTAACTACTCCCTCCC 59.548 54.545 14.27 0.00 0.00 4.30
2216 6611 3.051727 AGCAAGGATCCTAACTACTCCCT 60.052 47.826 16.55 0.00 0.00 4.20
2282 6946 5.791336 TCCGAGCACAATTATCTAGACAT 57.209 39.130 0.00 0.00 0.00 3.06
2410 7408 5.794945 CGCACATACAAAAGGTCAATTACTG 59.205 40.000 0.00 0.00 0.00 2.74
2433 7431 7.495934 ACCACCTCAGAATTATAAGATTTCACG 59.504 37.037 0.00 0.00 0.00 4.35
2442 7440 6.548321 ACCAAACACCACCTCAGAATTATAA 58.452 36.000 0.00 0.00 0.00 0.98
2445 7443 4.447138 ACCAAACACCACCTCAGAATTA 57.553 40.909 0.00 0.00 0.00 1.40
2452 7450 2.640316 AGAGAACCAAACACCACCTC 57.360 50.000 0.00 0.00 0.00 3.85
2453 7451 3.046374 ACTAGAGAACCAAACACCACCT 58.954 45.455 0.00 0.00 0.00 4.00
2454 7452 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
2455 7453 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
2456 7454 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
2457 7455 5.187186 TCATAGGACTAGAGAACCAAACACC 59.813 44.000 0.00 0.00 0.00 4.16
2458 7456 6.100668 GTCATAGGACTAGAGAACCAAACAC 58.899 44.000 0.00 0.00 40.99 3.32
2459 7457 6.282199 GTCATAGGACTAGAGAACCAAACA 57.718 41.667 0.00 0.00 40.99 2.83
2473 7471 6.547930 AGGGACTAGAAAAAGTCATAGGAC 57.452 41.667 0.00 0.00 46.40 3.85
2474 7472 8.120538 TCTTAGGGACTAGAAAAAGTCATAGGA 58.879 37.037 0.00 2.51 46.40 2.94
2475 7473 8.198778 GTCTTAGGGACTAGAAAAAGTCATAGG 58.801 40.741 0.00 0.52 46.40 2.57
2508 7506 5.130705 AGGACCTCCTTGAAAGTCTTTTT 57.869 39.130 0.00 0.00 46.09 1.94
2509 7507 4.797912 AGGACCTCCTTGAAAGTCTTTT 57.202 40.909 0.00 0.00 46.09 2.27
2528 7526 7.118535 GACTTTTTGCTAGAAGTCCTTAGAAGG 59.881 40.741 17.08 1.53 43.66 3.46
2529 7527 7.971183 ACTTTTTGCTAGAAGTCCTTAGAAG 57.029 36.000 0.00 0.00 30.64 2.85
2530 7528 7.964604 GACTTTTTGCTAGAAGTCCTTAGAA 57.035 36.000 17.08 0.00 43.66 2.10
2537 7535 5.767816 TTTGGGACTTTTTGCTAGAAGTC 57.232 39.130 18.88 18.88 46.90 3.01
2538 7536 6.154534 ACTTTTTGGGACTTTTTGCTAGAAGT 59.845 34.615 3.80 3.80 38.72 3.01
2539 7537 6.573434 ACTTTTTGGGACTTTTTGCTAGAAG 58.427 36.000 0.00 0.00 0.00 2.85
2540 7538 6.406512 GGACTTTTTGGGACTTTTTGCTAGAA 60.407 38.462 0.00 0.00 0.00 2.10
2541 7539 5.068591 GGACTTTTTGGGACTTTTTGCTAGA 59.931 40.000 0.00 0.00 0.00 2.43
2542 7540 5.289595 GGACTTTTTGGGACTTTTTGCTAG 58.710 41.667 0.00 0.00 0.00 3.42
2543 7541 4.100344 GGGACTTTTTGGGACTTTTTGCTA 59.900 41.667 0.00 0.00 0.00 3.49
2544 7542 3.118408 GGGACTTTTTGGGACTTTTTGCT 60.118 43.478 0.00 0.00 0.00 3.91
2545 7543 3.202906 GGGACTTTTTGGGACTTTTTGC 58.797 45.455 0.00 0.00 0.00 3.68
2546 7544 4.188462 GTGGGACTTTTTGGGACTTTTTG 58.812 43.478 0.00 0.00 0.00 2.44
2547 7545 3.199071 GGTGGGACTTTTTGGGACTTTTT 59.801 43.478 0.00 0.00 0.00 1.94
2548 7546 2.769663 GGTGGGACTTTTTGGGACTTTT 59.230 45.455 0.00 0.00 0.00 2.27
2549 7547 2.394632 GGTGGGACTTTTTGGGACTTT 58.605 47.619 0.00 0.00 0.00 2.66
2550 7548 1.412505 GGGTGGGACTTTTTGGGACTT 60.413 52.381 0.00 0.00 0.00 3.01
2551 7549 0.187606 GGGTGGGACTTTTTGGGACT 59.812 55.000 0.00 0.00 0.00 3.85
2552 7550 0.187606 AGGGTGGGACTTTTTGGGAC 59.812 55.000 0.00 0.00 0.00 4.46
2553 7551 0.187361 CAGGGTGGGACTTTTTGGGA 59.813 55.000 0.00 0.00 0.00 4.37
2554 7552 0.105709 ACAGGGTGGGACTTTTTGGG 60.106 55.000 0.00 0.00 0.00 4.12
2555 7553 1.788229 AACAGGGTGGGACTTTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
2556 7554 2.158971 CCAAACAGGGTGGGACTTTTTG 60.159 50.000 0.00 0.00 36.11 2.44
2557 7555 2.115427 CCAAACAGGGTGGGACTTTTT 58.885 47.619 0.00 0.00 32.03 1.94
2558 7556 1.007842 ACCAAACAGGGTGGGACTTTT 59.992 47.619 0.00 0.00 43.89 2.27
2559 7557 0.634465 ACCAAACAGGGTGGGACTTT 59.366 50.000 0.00 0.00 43.89 2.66
2560 7558 0.634465 AACCAAACAGGGTGGGACTT 59.366 50.000 0.00 0.00 41.32 3.01
2561 7559 0.634465 AAACCAAACAGGGTGGGACT 59.366 50.000 0.00 0.00 41.32 3.85
2562 7560 0.750249 CAAACCAAACAGGGTGGGAC 59.250 55.000 0.00 0.00 41.32 4.46
2563 7561 1.045911 GCAAACCAAACAGGGTGGGA 61.046 55.000 0.00 0.00 41.32 4.37
2564 7562 1.048160 AGCAAACCAAACAGGGTGGG 61.048 55.000 0.00 0.00 41.32 4.61
2565 7563 1.613437 CTAGCAAACCAAACAGGGTGG 59.387 52.381 0.00 0.00 41.32 4.61
2566 7564 1.613437 CCTAGCAAACCAAACAGGGTG 59.387 52.381 0.00 0.00 41.32 4.61
2567 7565 1.480498 CCCTAGCAAACCAAACAGGGT 60.480 52.381 0.00 0.00 45.04 4.34
2568 7566 1.203001 TCCCTAGCAAACCAAACAGGG 60.203 52.381 0.00 0.00 43.52 4.45
2569 7567 1.886542 GTCCCTAGCAAACCAAACAGG 59.113 52.381 0.00 0.00 45.67 4.00
2570 7568 2.863809 AGTCCCTAGCAAACCAAACAG 58.136 47.619 0.00 0.00 0.00 3.16
2571 7569 3.306472 AAGTCCCTAGCAAACCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
2572 7570 4.665833 AAAAGTCCCTAGCAAACCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
2573 7571 4.959839 AGAAAAAGTCCCTAGCAAACCAAA 59.040 37.500 0.00 0.00 0.00 3.28
2574 7572 4.542697 AGAAAAAGTCCCTAGCAAACCAA 58.457 39.130 0.00 0.00 0.00 3.67
2575 7573 4.178956 AGAAAAAGTCCCTAGCAAACCA 57.821 40.909 0.00 0.00 0.00 3.67
2576 7574 6.127703 GGATTAGAAAAAGTCCCTAGCAAACC 60.128 42.308 0.00 0.00 0.00 3.27
2577 7575 6.127703 GGGATTAGAAAAAGTCCCTAGCAAAC 60.128 42.308 2.09 0.00 45.57 2.93
2578 7576 5.949952 GGGATTAGAAAAAGTCCCTAGCAAA 59.050 40.000 2.09 0.00 45.57 3.68
2579 7577 5.506708 GGGATTAGAAAAAGTCCCTAGCAA 58.493 41.667 2.09 0.00 45.57 3.91
2580 7578 5.112129 GGGATTAGAAAAAGTCCCTAGCA 57.888 43.478 2.09 0.00 45.57 3.49
2586 7584 6.399639 TTGTGTTGGGATTAGAAAAAGTCC 57.600 37.500 0.00 0.00 0.00 3.85
2587 7585 8.710835 TTTTTGTGTTGGGATTAGAAAAAGTC 57.289 30.769 0.00 0.00 0.00 3.01
2609 7607 3.196901 GTGTTTGGTTCCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
2610 7608 2.764010 GTGTTTGGTTCCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
2611 7609 2.384828 GTGTTTGGTTCCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
2612 7610 1.411074 GGTGTTTGGTTCCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
2613 7611 0.185175 GGTGTTTGGTTCCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
2614 7612 0.826256 GGGTGTTTGGTTCCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
2615 7613 1.539665 GGGTGTTTGGTTCCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
2616 7614 1.533033 GGGGTGTTTGGTTCCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
2617 7615 1.533033 GGGGGTGTTTGGTTCCAGG 60.533 63.158 0.00 0.00 0.00 4.45
2618 7616 0.827507 CAGGGGGTGTTTGGTTCCAG 60.828 60.000 0.00 0.00 0.00 3.86
2619 7617 1.231641 CAGGGGGTGTTTGGTTCCA 59.768 57.895 0.00 0.00 0.00 3.53
2620 7618 0.539669 CTCAGGGGGTGTTTGGTTCC 60.540 60.000 0.00 0.00 0.00 3.62
2621 7619 0.185175 ACTCAGGGGGTGTTTGGTTC 59.815 55.000 0.00 0.00 0.00 3.62
2622 7620 0.185175 GACTCAGGGGGTGTTTGGTT 59.815 55.000 0.00 0.00 0.00 3.67
2623 7621 0.991355 TGACTCAGGGGGTGTTTGGT 60.991 55.000 0.00 0.00 0.00 3.67
2624 7622 0.184933 TTGACTCAGGGGGTGTTTGG 59.815 55.000 0.00 0.00 0.00 3.28
2625 7623 2.292828 ATTGACTCAGGGGGTGTTTG 57.707 50.000 0.00 0.00 0.00 2.93
2626 7624 4.675063 ATTATTGACTCAGGGGGTGTTT 57.325 40.909 0.00 0.00 0.00 2.83
2627 7625 4.675063 AATTATTGACTCAGGGGGTGTT 57.325 40.909 0.00 0.00 0.00 3.32
2628 7626 5.994416 ATAATTATTGACTCAGGGGGTGT 57.006 39.130 0.00 0.00 0.00 4.16
2629 7627 8.940397 ATTTATAATTATTGACTCAGGGGGTG 57.060 34.615 2.68 0.00 0.00 4.61
2836 9230 4.760530 ATCAGTAGCAGCTCCAAACATA 57.239 40.909 0.00 0.00 0.00 2.29
2969 9363 1.517257 CGAGGTCGCTACTGGCAAG 60.517 63.158 0.00 0.00 41.91 4.01
2986 9380 1.799181 CGCATGTAGTGGAGTTCTCCG 60.799 57.143 13.27 0.00 0.00 4.63
3040 9434 2.376109 CGGTTAAGTAGAGGAGCAGGA 58.624 52.381 0.00 0.00 0.00 3.86
3184 9578 4.957296 TGTTACTGTTCTCAAACCTCTCC 58.043 43.478 0.00 0.00 34.28 3.71
3280 9674 4.382254 GCCATCTCAAAAATTGATGAGGCA 60.382 41.667 16.52 3.78 42.62 4.75
3473 9867 1.081481 TGGACCTCCAGGAGTACAGA 58.919 55.000 15.86 0.00 42.01 3.41
3523 9917 8.972458 TTCCATGAAATTCTCGTATTCCAATA 57.028 30.769 0.00 0.00 0.00 1.90
3563 9957 6.833416 AGCCCATAGTAACATGAAAAATAGCA 59.167 34.615 0.00 0.00 0.00 3.49
3590 10025 8.816640 ACAGTCAACAACCATGAAATTTAATC 57.183 30.769 0.00 0.00 0.00 1.75
3592 10027 9.689976 CATACAGTCAACAACCATGAAATTTAA 57.310 29.630 0.00 0.00 0.00 1.52
3594 10029 7.153985 CCATACAGTCAACAACCATGAAATTT 58.846 34.615 0.00 0.00 0.00 1.82
3597 10032 4.022416 GCCATACAGTCAACAACCATGAAA 60.022 41.667 0.00 0.00 0.00 2.69
3600 10035 2.819019 TGCCATACAGTCAACAACCATG 59.181 45.455 0.00 0.00 0.00 3.66
3601 10036 3.084039 CTGCCATACAGTCAACAACCAT 58.916 45.455 0.00 0.00 41.86 3.55
3602 10037 2.503331 CTGCCATACAGTCAACAACCA 58.497 47.619 0.00 0.00 41.86 3.67
3621 10056 0.603569 AGTGTTGCGCAGTAGCTACT 59.396 50.000 20.95 20.95 41.97 2.57
3622 10057 2.273370 TAGTGTTGCGCAGTAGCTAC 57.727 50.000 16.43 16.43 41.84 3.58
3623 10058 2.230508 ACTTAGTGTTGCGCAGTAGCTA 59.769 45.455 11.31 9.40 39.10 3.32
3624 10059 1.000955 ACTTAGTGTTGCGCAGTAGCT 59.999 47.619 11.31 10.42 39.10 3.32
3625 10060 1.126846 CACTTAGTGTTGCGCAGTAGC 59.873 52.381 11.31 3.18 34.75 3.58
3626 10061 2.672714 TCACTTAGTGTTGCGCAGTAG 58.327 47.619 11.31 5.63 34.75 2.57
3627 10062 2.804697 TCACTTAGTGTTGCGCAGTA 57.195 45.000 11.31 0.00 34.79 2.74
3628 10063 2.069273 GATCACTTAGTGTTGCGCAGT 58.931 47.619 11.31 0.00 34.79 4.40
3629 10064 1.394917 GGATCACTTAGTGTTGCGCAG 59.605 52.381 11.31 0.00 34.79 5.18
3630 10065 1.270571 TGGATCACTTAGTGTTGCGCA 60.271 47.619 5.66 5.66 34.79 6.09
3631 10066 1.438651 TGGATCACTTAGTGTTGCGC 58.561 50.000 12.41 0.00 34.79 6.09
3632 10067 4.685169 AATTGGATCACTTAGTGTTGCG 57.315 40.909 12.41 0.00 34.79 4.85
3633 10068 8.028938 ACAAATAATTGGATCACTTAGTGTTGC 58.971 33.333 12.41 9.90 41.01 4.17
3634 10069 9.345517 CACAAATAATTGGATCACTTAGTGTTG 57.654 33.333 12.41 7.68 41.01 3.33
3635 10070 9.295825 TCACAAATAATTGGATCACTTAGTGTT 57.704 29.630 12.41 3.76 41.01 3.32
3636 10071 8.862325 TCACAAATAATTGGATCACTTAGTGT 57.138 30.769 12.41 0.00 41.01 3.55
3692 10173 7.148018 ACGATTTGAATGGCATTTATTCAGTCT 60.148 33.333 14.93 0.00 43.22 3.24
3710 10191 9.754382 AGTTTTAGTACTTAACAGACGATTTGA 57.246 29.630 17.65 0.00 0.00 2.69
3738 10219 6.183360 ACAAAAATTGGAATGAGTTGTACGGT 60.183 34.615 0.00 0.00 34.12 4.83
3796 10277 4.463891 TCAACACATGCTCTCATCTACAGA 59.536 41.667 0.00 0.00 0.00 3.41
3799 10280 6.674694 AAATCAACACATGCTCTCATCTAC 57.325 37.500 0.00 0.00 0.00 2.59
3801 10282 6.585695 AAAAATCAACACATGCTCTCATCT 57.414 33.333 0.00 0.00 0.00 2.90
3843 10324 5.736486 TCATAGGTCGATATCGCATACTC 57.264 43.478 20.34 7.76 39.60 2.59
3850 10331 4.156008 TGTCCACATCATAGGTCGATATCG 59.844 45.833 19.14 19.14 41.45 2.92
3862 10348 2.844946 TCAAACACGTGTCCACATCAT 58.155 42.857 23.61 0.00 0.00 2.45
3870 10356 6.382821 TCAAACAATTTTCAAACACGTGTC 57.617 33.333 23.61 0.00 0.00 3.67
3899 10385 1.142060 TCAAACGAGGGGAGAGCAAAA 59.858 47.619 0.00 0.00 0.00 2.44
3923 10409 0.472471 TGGGTTGTGTGGGTCTTCTC 59.528 55.000 0.00 0.00 0.00 2.87
3943 10429 5.678132 AATGGTTGAGCTTGAATTTTTGC 57.322 34.783 0.00 0.00 0.00 3.68
3946 10432 7.243604 TCCATAATGGTTGAGCTTGAATTTT 57.756 32.000 0.00 0.00 39.03 1.82
3983 10469 2.157834 TGATTCGTTGTGCCGTACTT 57.842 45.000 0.00 0.00 0.00 2.24
3990 10476 4.593157 TGTTAGTTGTTGATTCGTTGTGC 58.407 39.130 0.00 0.00 0.00 4.57
4037 10524 4.159506 AGCTGTGTAAGTTGGAAGCAAAAA 59.840 37.500 0.00 0.00 33.08 1.94
4038 10526 3.699038 AGCTGTGTAAGTTGGAAGCAAAA 59.301 39.130 0.00 0.00 33.08 2.44
4039 10527 3.287222 AGCTGTGTAAGTTGGAAGCAAA 58.713 40.909 0.00 0.00 33.08 3.68
4046 10534 5.237815 TGAGACATTAGCTGTGTAAGTTGG 58.762 41.667 6.57 0.00 38.54 3.77
4076 10564 0.682852 AAATCGTCCGGGAACTGTCA 59.317 50.000 0.00 0.00 0.00 3.58
4120 10609 0.378257 GCTATGGCAATCGTGTGTGG 59.622 55.000 0.00 0.00 38.54 4.17
4122 10611 0.035534 TGGCTATGGCAATCGTGTGT 60.036 50.000 2.58 0.00 40.87 3.72
4133 10622 1.674441 CACTGATTGTGCTGGCTATGG 59.326 52.381 0.00 0.00 40.06 2.74
4137 10626 1.303888 CCCACTGATTGTGCTGGCT 60.304 57.895 0.00 0.00 44.92 4.75
4138 10627 2.998279 GCCCACTGATTGTGCTGGC 61.998 63.158 0.00 0.00 44.92 4.85
4142 10631 1.430632 CATCGCCCACTGATTGTGC 59.569 57.895 0.00 0.00 44.92 4.57
4144 10633 1.077501 CCCATCGCCCACTGATTGT 60.078 57.895 0.00 0.00 0.00 2.71
4209 10698 4.275689 TCTGTTACAACTTCCATGTGCAAG 59.724 41.667 0.00 0.00 32.27 4.01
4213 10702 5.179368 ACGATTCTGTTACAACTTCCATGTG 59.821 40.000 0.00 0.00 32.27 3.21
4217 10706 4.509970 CACACGATTCTGTTACAACTTCCA 59.490 41.667 0.00 0.00 0.00 3.53
4251 10740 2.428171 CCATGTTTGATTGGTAGCCTGG 59.572 50.000 0.00 0.00 0.00 4.45
4252 10741 3.091545 ACCATGTTTGATTGGTAGCCTG 58.908 45.455 0.00 0.00 44.36 4.85
4253 10742 3.456380 ACCATGTTTGATTGGTAGCCT 57.544 42.857 0.00 0.00 44.36 4.58
4254 10743 4.220602 AGAAACCATGTTTGATTGGTAGCC 59.779 41.667 0.00 0.00 45.44 3.93
4255 10744 5.183904 AGAGAAACCATGTTTGATTGGTAGC 59.816 40.000 0.00 0.00 45.44 3.58
4256 10745 6.824305 AGAGAAACCATGTTTGATTGGTAG 57.176 37.500 0.00 0.00 45.44 3.18
4257 10746 8.877864 AATAGAGAAACCATGTTTGATTGGTA 57.122 30.769 0.00 0.00 45.44 3.25
4259 10748 7.093814 TGGAATAGAGAAACCATGTTTGATTGG 60.094 37.037 0.00 0.00 39.02 3.16
4288 10777 0.531974 ACTACACCCAAGCACACACG 60.532 55.000 0.00 0.00 0.00 4.49
4311 10800 0.655733 CCAACTTCGTTGAAGCGTGT 59.344 50.000 8.21 0.00 45.28 4.49
4318 10807 0.865111 CATGCGACCAACTTCGTTGA 59.135 50.000 8.21 0.00 45.28 3.18
4320 10809 0.586319 CACATGCGACCAACTTCGTT 59.414 50.000 0.00 0.00 41.26 3.85
4334 10823 4.119136 TGCGATAATACACCTGTCACATG 58.881 43.478 0.00 0.00 0.00 3.21
4335 10824 4.400529 TGCGATAATACACCTGTCACAT 57.599 40.909 0.00 0.00 0.00 3.21
4336 10825 3.878160 TGCGATAATACACCTGTCACA 57.122 42.857 0.00 0.00 0.00 3.58
4337 10826 5.064707 ACATTTGCGATAATACACCTGTCAC 59.935 40.000 0.00 0.00 0.00 3.67
4374 10863 6.070897 TGGTTCTGTAAACACACATGATTG 57.929 37.500 0.00 0.00 0.00 2.67
4379 10868 4.556501 CGCAATGGTTCTGTAAACACACAT 60.557 41.667 0.00 0.00 34.41 3.21
4390 10879 1.722464 CAAATGTGCGCAATGGTTCTG 59.278 47.619 14.00 0.00 0.00 3.02
4392 10881 1.070038 CCAAATGTGCGCAATGGTTC 58.930 50.000 14.00 0.00 33.53 3.62
4401 10890 1.727880 CCTGCAAATTCCAAATGTGCG 59.272 47.619 9.60 5.45 38.05 5.34
4406 10895 3.620472 GCATGGTCCTGCAAATTCCAAAT 60.620 43.478 8.05 0.00 41.87 2.32
4429 10918 0.038744 AGCTGGTGCAAAGGCTACAT 59.961 50.000 6.75 0.00 42.74 2.29
4431 10920 1.087501 GTAGCTGGTGCAAAGGCTAC 58.912 55.000 21.70 21.70 46.20 3.58
4453 10942 4.214119 GCGTGTTCTTGATATATGCATGGT 59.786 41.667 10.16 0.04 0.00 3.55
4508 10997 7.816640 ACTTGGTGTATGACATGTGAAATAAC 58.183 34.615 1.15 0.00 0.00 1.89
4512 11002 7.663493 TGAATACTTGGTGTATGACATGTGAAA 59.337 33.333 1.15 0.00 40.69 2.69
4572 11062 8.492673 TCCTACATTTGTGTATCTTTCACATC 57.507 34.615 0.00 0.00 43.74 3.06
4580 11070 8.691661 AACTGTTTTCCTACATTTGTGTATCT 57.308 30.769 0.00 0.00 0.00 1.98
4612 11102 4.937620 TGTCACAGAGGTAAAGATGCAATC 59.062 41.667 0.00 0.00 46.04 2.67
4613 11103 4.910195 TGTCACAGAGGTAAAGATGCAAT 58.090 39.130 0.00 0.00 0.00 3.56
4614 11104 4.350368 TGTCACAGAGGTAAAGATGCAA 57.650 40.909 0.00 0.00 0.00 4.08
4615 11105 4.350368 TTGTCACAGAGGTAAAGATGCA 57.650 40.909 0.00 0.00 0.00 3.96
4616 11106 5.335191 CCTTTTGTCACAGAGGTAAAGATGC 60.335 44.000 1.16 0.00 0.00 3.91
4617 11107 5.765182 ACCTTTTGTCACAGAGGTAAAGATG 59.235 40.000 12.09 0.00 40.59 2.90
4618 11108 5.941788 ACCTTTTGTCACAGAGGTAAAGAT 58.058 37.500 12.09 0.00 40.59 2.40
4619 11109 5.367945 ACCTTTTGTCACAGAGGTAAAGA 57.632 39.130 12.09 0.00 40.59 2.52
4620 11110 6.710744 ACATACCTTTTGTCACAGAGGTAAAG 59.289 38.462 20.17 17.81 45.13 1.85
4621 11111 6.597562 ACATACCTTTTGTCACAGAGGTAAA 58.402 36.000 20.17 6.75 45.13 2.01
4622 11112 6.182507 ACATACCTTTTGTCACAGAGGTAA 57.817 37.500 20.17 8.97 45.13 2.85
4623 11113 5.818678 ACATACCTTTTGTCACAGAGGTA 57.181 39.130 19.13 19.13 45.81 3.08
4624 11114 4.706842 ACATACCTTTTGTCACAGAGGT 57.293 40.909 16.61 16.61 44.35 3.85
4625 11115 4.455877 GGAACATACCTTTTGTCACAGAGG 59.544 45.833 7.56 7.56 35.39 3.69
4626 11116 5.063204 TGGAACATACCTTTTGTCACAGAG 58.937 41.667 0.00 0.00 0.00 3.35
4627 11117 5.042463 TGGAACATACCTTTTGTCACAGA 57.958 39.130 0.00 0.00 0.00 3.41
4628 11118 5.766150 TTGGAACATACCTTTTGTCACAG 57.234 39.130 0.00 0.00 39.30 3.66
4629 11119 5.068460 CCTTTGGAACATACCTTTTGTCACA 59.932 40.000 0.00 0.00 39.30 3.58
4630 11120 5.508994 CCCTTTGGAACATACCTTTTGTCAC 60.509 44.000 0.00 0.00 39.30 3.67
4631 11121 4.586841 CCCTTTGGAACATACCTTTTGTCA 59.413 41.667 0.00 0.00 39.30 3.58
4632 11122 4.587262 ACCCTTTGGAACATACCTTTTGTC 59.413 41.667 0.00 0.00 39.30 3.18
4633 11123 4.552674 ACCCTTTGGAACATACCTTTTGT 58.447 39.130 0.00 0.00 39.30 2.83
4634 11124 5.069781 TGAACCCTTTGGAACATACCTTTTG 59.930 40.000 0.00 0.00 39.30 2.44
4635 11125 5.212745 TGAACCCTTTGGAACATACCTTTT 58.787 37.500 0.00 0.00 39.30 2.27
4636 11126 4.810345 TGAACCCTTTGGAACATACCTTT 58.190 39.130 0.00 0.00 39.30 3.11
4637 11127 4.463050 TGAACCCTTTGGAACATACCTT 57.537 40.909 0.00 0.00 39.30 3.50
4638 11128 4.675063 ATGAACCCTTTGGAACATACCT 57.325 40.909 0.00 0.00 39.30 3.08
4639 11129 7.230712 CCTTATATGAACCCTTTGGAACATACC 59.769 40.741 0.00 0.00 39.30 2.73
4640 11130 7.996644 TCCTTATATGAACCCTTTGGAACATAC 59.003 37.037 0.00 0.00 39.30 2.39
4641 11131 8.108378 TCCTTATATGAACCCTTTGGAACATA 57.892 34.615 0.00 0.00 39.30 2.29
4642 11132 6.980577 TCCTTATATGAACCCTTTGGAACAT 58.019 36.000 0.00 0.00 39.30 2.71
4643 11133 6.395780 TCCTTATATGAACCCTTTGGAACA 57.604 37.500 0.00 0.00 34.81 3.18
4644 11134 7.342026 ACATTCCTTATATGAACCCTTTGGAAC 59.658 37.037 0.00 0.00 34.49 3.62
4645 11135 7.341769 CACATTCCTTATATGAACCCTTTGGAA 59.658 37.037 0.00 0.00 35.85 3.53
4646 11136 6.833416 CACATTCCTTATATGAACCCTTTGGA 59.167 38.462 0.00 0.00 34.81 3.53
4647 11137 6.040842 CCACATTCCTTATATGAACCCTTTGG 59.959 42.308 0.00 0.00 37.80 3.28
4648 11138 6.833416 TCCACATTCCTTATATGAACCCTTTG 59.167 38.462 0.00 0.00 0.00 2.77
4649 11139 6.833933 GTCCACATTCCTTATATGAACCCTTT 59.166 38.462 0.00 0.00 0.00 3.11
4650 11140 6.069088 TGTCCACATTCCTTATATGAACCCTT 60.069 38.462 0.00 0.00 0.00 3.95
4651 11141 5.431731 TGTCCACATTCCTTATATGAACCCT 59.568 40.000 0.00 0.00 0.00 4.34
4652 11142 5.690865 TGTCCACATTCCTTATATGAACCC 58.309 41.667 0.00 0.00 0.00 4.11
4653 11143 7.823745 AATGTCCACATTCCTTATATGAACC 57.176 36.000 0.00 0.00 42.45 3.62
4654 11144 9.125026 AGAAATGTCCACATTCCTTATATGAAC 57.875 33.333 5.41 0.00 45.06 3.18
4655 11145 9.342308 GAGAAATGTCCACATTCCTTATATGAA 57.658 33.333 5.41 0.00 45.06 2.57
4656 11146 7.939039 GGAGAAATGTCCACATTCCTTATATGA 59.061 37.037 5.41 0.00 45.06 2.15
4657 11147 7.720957 TGGAGAAATGTCCACATTCCTTATATG 59.279 37.037 5.41 0.00 45.06 1.78
4658 11148 7.815383 TGGAGAAATGTCCACATTCCTTATAT 58.185 34.615 5.41 0.00 45.06 0.86
4659 11149 7.206789 TGGAGAAATGTCCACATTCCTTATA 57.793 36.000 5.41 0.00 45.06 0.98
4660 11150 6.078456 TGGAGAAATGTCCACATTCCTTAT 57.922 37.500 5.41 0.00 45.06 1.73
4661 11151 5.512942 TGGAGAAATGTCCACATTCCTTA 57.487 39.130 5.41 0.00 45.06 2.69
4662 11152 4.387026 TGGAGAAATGTCCACATTCCTT 57.613 40.909 5.41 0.00 45.06 3.36
4670 11160 1.967779 TCGAGTGTGGAGAAATGTCCA 59.032 47.619 0.00 0.00 44.82 4.02
4671 11161 2.743636 TCGAGTGTGGAGAAATGTCC 57.256 50.000 0.00 0.00 37.10 4.02
4672 11162 3.849911 TGATCGAGTGTGGAGAAATGTC 58.150 45.455 0.00 0.00 0.00 3.06
4673 11163 3.854666 CTGATCGAGTGTGGAGAAATGT 58.145 45.455 0.00 0.00 0.00 2.71
4674 11164 2.606725 GCTGATCGAGTGTGGAGAAATG 59.393 50.000 0.00 0.00 0.00 2.32
4675 11165 2.234661 TGCTGATCGAGTGTGGAGAAAT 59.765 45.455 0.00 0.00 0.00 2.17
4676 11166 1.618343 TGCTGATCGAGTGTGGAGAAA 59.382 47.619 0.00 0.00 0.00 2.52
4677 11167 1.067565 GTGCTGATCGAGTGTGGAGAA 60.068 52.381 0.00 0.00 0.00 2.87
4678 11168 0.528017 GTGCTGATCGAGTGTGGAGA 59.472 55.000 0.00 0.00 0.00 3.71
4679 11169 0.529833 AGTGCTGATCGAGTGTGGAG 59.470 55.000 0.00 0.00 0.00 3.86
4680 11170 0.244721 CAGTGCTGATCGAGTGTGGA 59.755 55.000 0.00 0.00 0.00 4.02
4681 11171 0.037882 ACAGTGCTGATCGAGTGTGG 60.038 55.000 6.17 0.00 0.00 4.17
4682 11172 1.344458 GACAGTGCTGATCGAGTGTG 58.656 55.000 6.17 0.00 0.00 3.82
4683 11173 0.109551 CGACAGTGCTGATCGAGTGT 60.110 55.000 6.17 0.56 36.76 3.55
4684 11174 0.109551 ACGACAGTGCTGATCGAGTG 60.110 55.000 21.41 0.00 37.46 3.51
4685 11175 0.109551 CACGACAGTGCTGATCGAGT 60.110 55.000 21.41 7.24 41.94 4.18
4686 11176 2.646596 CACGACAGTGCTGATCGAG 58.353 57.895 21.41 14.32 41.94 4.04
4687 11177 4.868195 CACGACAGTGCTGATCGA 57.132 55.556 21.41 0.00 41.94 3.59
4696 11186 2.967076 CGGCTTGTGCACGACAGT 60.967 61.111 13.13 0.00 41.91 3.55
4697 11187 4.374702 GCGGCTTGTGCACGACAG 62.375 66.667 13.13 9.16 41.91 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.