Multiple sequence alignment - TraesCS2A01G576900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G576900 chr2A 100.000 3912 0 0 1 3912 771128370 771124459 0.000000e+00 7225.0
1 TraesCS2A01G576900 chr2A 89.036 1970 129 50 1636 3554 771345535 771347468 0.000000e+00 2361.0
2 TraesCS2A01G576900 chr2A 90.972 1728 80 32 1737 3420 771074011 771072316 0.000000e+00 2257.0
3 TraesCS2A01G576900 chr2A 82.910 1024 139 19 1929 2936 771501413 771500410 0.000000e+00 889.0
4 TraesCS2A01G576900 chr2A 82.759 638 60 22 3285 3912 771072452 771071855 1.250000e-144 523.0
5 TraesCS2A01G576900 chr2A 87.783 442 41 10 1302 1739 771074573 771074141 4.510000e-139 505.0
6 TraesCS2A01G576900 chr2A 81.542 493 57 15 1123 1594 771502125 771501646 3.690000e-100 375.0
7 TraesCS2A01G576900 chr2A 82.967 364 27 13 256 587 771344940 771345300 2.960000e-76 296.0
8 TraesCS2A01G576900 chr2A 89.130 230 16 1 1111 1331 771345300 771345529 1.070000e-70 278.0
9 TraesCS2A01G576900 chr2A 75.345 580 87 32 259 813 771075688 771075140 1.090000e-55 228.0
10 TraesCS2A01G576900 chr2A 81.557 244 24 7 941 1178 771074925 771074697 8.630000e-42 182.0
11 TraesCS2A01G576900 chr2A 88.350 103 5 4 1737 1836 771074115 771074017 2.470000e-22 117.0
12 TraesCS2A01G576900 chr2A 95.652 46 2 0 1054 1099 771502170 771502125 1.510000e-09 75.0
13 TraesCS2A01G576900 chr2A 88.235 51 5 1 140 190 678825232 678825281 4.220000e-05 60.2
14 TraesCS2A01G576900 chr2D 91.983 1846 101 23 1737 3549 645612999 645611168 0.000000e+00 2545.0
15 TraesCS2A01G576900 chr2D 81.926 1184 162 25 1774 2936 645816221 645815069 0.000000e+00 953.0
16 TraesCS2A01G576900 chr2D 81.045 1187 176 26 1775 2936 645791852 645793014 0.000000e+00 900.0
17 TraesCS2A01G576900 chr2D 79.912 1140 165 30 1762 2876 645723555 645724655 0.000000e+00 778.0
18 TraesCS2A01G576900 chr2D 81.013 790 117 23 1774 2554 645560218 645559453 7.230000e-167 597.0
19 TraesCS2A01G576900 chr2D 85.110 591 67 16 1048 1623 645788556 645789140 5.630000e-163 584.0
20 TraesCS2A01G576900 chr2D 83.012 518 69 13 1123 1623 645816943 645816428 5.960000e-123 451.0
21 TraesCS2A01G576900 chr2D 86.085 424 45 12 1328 1739 645613772 645613351 9.970000e-121 444.0
22 TraesCS2A01G576900 chr2D 78.327 789 98 36 3010 3732 645793550 645794331 3.590000e-120 442.0
23 TraesCS2A01G576900 chr2D 88.997 309 26 5 3608 3912 645611143 645610839 3.690000e-100 375.0
24 TraesCS2A01G576900 chr2D 77.904 439 67 21 1181 1595 645722896 645723328 3.020000e-61 246.0
25 TraesCS2A01G576900 chr2D 85.484 124 13 2 3316 3434 645585838 645585961 1.480000e-24 124.0
26 TraesCS2A01G576900 chr2D 88.462 104 7 3 1737 1838 645613325 645613225 1.910000e-23 121.0
27 TraesCS2A01G576900 chr2D 76.154 260 43 11 3044 3287 645111719 645111463 6.870000e-23 119.0
28 TraesCS2A01G576900 chr2D 92.754 69 3 1 3288 3356 645111438 645111372 8.950000e-17 99.0
29 TraesCS2A01G576900 chr2D 91.549 71 6 0 1048 1118 645722799 645722869 8.950000e-17 99.0
30 TraesCS2A01G576900 chr2D 94.340 53 2 1 1047 1099 645816994 645816943 3.240000e-11 80.5
31 TraesCS2A01G576900 chr2D 92.308 52 3 1 1785 1836 645613055 645613005 5.420000e-09 73.1
32 TraesCS2A01G576900 chr2D 90.741 54 1 1 1737 1790 645613224 645613175 7.010000e-08 69.4
33 TraesCS2A01G576900 chr2B 89.667 1742 89 43 1737 3420 790104979 790106687 0.000000e+00 2135.0
34 TraesCS2A01G576900 chr2B 82.447 1185 162 25 1774 2936 789790963 789792123 0.000000e+00 994.0
35 TraesCS2A01G576900 chr2B 85.640 773 75 19 978 1738 790104155 790104903 0.000000e+00 780.0
36 TraesCS2A01G576900 chr2B 81.488 578 68 27 1054 1595 790229855 790229281 4.640000e-119 438.0
37 TraesCS2A01G576900 chr2B 88.411 302 16 5 984 1282 789790174 789790459 2.890000e-91 346.0
38 TraesCS2A01G576900 chr2B 89.474 247 26 0 2675 2921 788993278 788993524 2.930000e-81 313.0
39 TraesCS2A01G576900 chr2B 100.000 30 0 0 870 899 790103942 790103971 5.460000e-04 56.5
40 TraesCS2A01G576900 chr3A 92.169 166 13 0 1 166 23887993 23887828 6.530000e-58 235.0
41 TraesCS2A01G576900 chr7A 90.968 155 14 0 16 170 104493416 104493570 3.960000e-50 209.0
42 TraesCS2A01G576900 chr7A 96.610 118 4 0 1 118 104493261 104493378 3.080000e-46 196.0
43 TraesCS2A01G576900 chr7B 90.566 53 4 1 209 260 533377885 533377937 7.010000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G576900 chr2A 771124459 771128370 3911 True 7225.000000 7225 100.000000 1 3912 1 chr2A.!!$R1 3911
1 TraesCS2A01G576900 chr2A 771344940 771347468 2528 False 978.333333 2361 87.044333 256 3554 3 chr2A.!!$F2 3298
2 TraesCS2A01G576900 chr2A 771071855 771075688 3833 True 635.333333 2257 84.461000 259 3912 6 chr2A.!!$R2 3653
3 TraesCS2A01G576900 chr2A 771500410 771502170 1760 True 446.333333 889 86.701333 1054 2936 3 chr2A.!!$R3 1882
4 TraesCS2A01G576900 chr2D 645788556 645794331 5775 False 642.000000 900 81.494000 1048 3732 3 chr2D.!!$F3 2684
5 TraesCS2A01G576900 chr2D 645610839 645613772 2933 True 604.583333 2545 89.762667 1328 3912 6 chr2D.!!$R3 2584
6 TraesCS2A01G576900 chr2D 645559453 645560218 765 True 597.000000 597 81.013000 1774 2554 1 chr2D.!!$R1 780
7 TraesCS2A01G576900 chr2D 645815069 645816994 1925 True 494.833333 953 86.426000 1047 2936 3 chr2D.!!$R4 1889
8 TraesCS2A01G576900 chr2D 645722799 645724655 1856 False 374.333333 778 83.121667 1048 2876 3 chr2D.!!$F2 1828
9 TraesCS2A01G576900 chr2B 790103942 790106687 2745 False 990.500000 2135 91.769000 870 3420 3 chr2B.!!$F3 2550
10 TraesCS2A01G576900 chr2B 789790174 789792123 1949 False 670.000000 994 85.429000 984 2936 2 chr2B.!!$F2 1952
11 TraesCS2A01G576900 chr2B 790229281 790229855 574 True 438.000000 438 81.488000 1054 1595 1 chr2B.!!$R1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.320421 TCGTAGGGCTGTGCTTGTTC 60.320 55.0 0.0 0.0 0.0 3.18 F
217 218 0.320771 CGTAGGGCTGTGCTTGTTCT 60.321 55.0 0.0 0.0 0.0 3.01 F
219 220 0.764890 TAGGGCTGTGCTTGTTCTGT 59.235 50.0 0.0 0.0 0.0 3.41 F
220 221 0.820891 AGGGCTGTGCTTGTTCTGTG 60.821 55.0 0.0 0.0 0.0 3.66 F
1354 1627 0.108138 CCTAGTCAGAACAAGCCCCG 60.108 60.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1340 1613 0.036388 GATGACGGGGCTTGTTCTGA 60.036 55.0 0.00 0.00 0.00 3.27 R
1343 1616 0.744771 GGAGATGACGGGGCTTGTTC 60.745 60.0 0.00 0.00 0.00 3.18 R
1351 1624 0.752009 TCCTTCTCGGAGATGACGGG 60.752 60.0 19.28 11.81 36.69 5.28 R
1443 1722 0.954449 TCTCTTTGCTGCTGCTGAGC 60.954 55.0 17.00 7.86 46.44 4.26 R
3225 7228 0.460987 CCGCAGCTCAAGTTCCTAGG 60.461 60.0 0.82 0.82 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.176271 GTGGCAGAACATTAAATCTTGGC 58.824 43.478 0.00 0.00 0.00 4.52
23 24 3.195396 TGGCAGAACATTAAATCTTGGCC 59.805 43.478 0.00 0.00 36.05 5.36
24 25 3.195396 GGCAGAACATTAAATCTTGGCCA 59.805 43.478 0.00 0.00 35.74 5.36
25 26 4.141869 GGCAGAACATTAAATCTTGGCCAT 60.142 41.667 6.09 0.00 35.74 4.40
26 27 5.422145 GCAGAACATTAAATCTTGGCCATT 58.578 37.500 6.09 0.00 0.00 3.16
27 28 5.292589 GCAGAACATTAAATCTTGGCCATTG 59.707 40.000 6.09 2.48 0.00 2.82
28 29 6.632909 CAGAACATTAAATCTTGGCCATTGA 58.367 36.000 6.09 9.08 0.00 2.57
29 30 7.098477 CAGAACATTAAATCTTGGCCATTGAA 58.902 34.615 6.09 0.00 0.00 2.69
30 31 7.767198 CAGAACATTAAATCTTGGCCATTGAAT 59.233 33.333 6.09 0.00 0.00 2.57
31 32 8.323567 AGAACATTAAATCTTGGCCATTGAATT 58.676 29.630 6.09 10.38 0.00 2.17
32 33 9.598517 GAACATTAAATCTTGGCCATTGAATTA 57.401 29.630 6.09 9.34 0.00 1.40
33 34 9.603921 AACATTAAATCTTGGCCATTGAATTAG 57.396 29.630 6.09 0.00 0.00 1.73
34 35 8.980596 ACATTAAATCTTGGCCATTGAATTAGA 58.019 29.630 6.09 4.56 0.00 2.10
35 36 9.991906 CATTAAATCTTGGCCATTGAATTAGAT 57.008 29.630 6.09 7.21 0.00 1.98
36 37 9.991906 ATTAAATCTTGGCCATTGAATTAGATG 57.008 29.630 6.09 0.00 0.00 2.90
37 38 6.415206 AATCTTGGCCATTGAATTAGATGG 57.585 37.500 6.09 12.94 44.52 3.51
38 39 5.128033 TCTTGGCCATTGAATTAGATGGA 57.872 39.130 18.94 1.74 44.49 3.41
39 40 5.517924 TCTTGGCCATTGAATTAGATGGAA 58.482 37.500 18.94 8.00 44.49 3.53
40 41 5.595542 TCTTGGCCATTGAATTAGATGGAAG 59.404 40.000 18.94 14.67 44.49 3.46
41 42 5.128033 TGGCCATTGAATTAGATGGAAGA 57.872 39.130 18.94 3.77 44.49 2.87
42 43 4.889409 TGGCCATTGAATTAGATGGAAGAC 59.111 41.667 18.94 9.07 44.49 3.01
43 44 4.279420 GGCCATTGAATTAGATGGAAGACC 59.721 45.833 18.94 9.62 44.49 3.85
57 58 4.922206 TGGAAGACCATCAAAGCAATACT 58.078 39.130 0.00 0.00 41.77 2.12
58 59 4.701651 TGGAAGACCATCAAAGCAATACTG 59.298 41.667 0.00 0.00 41.77 2.74
59 60 4.943705 GGAAGACCATCAAAGCAATACTGA 59.056 41.667 0.00 0.00 35.97 3.41
60 61 5.163713 GGAAGACCATCAAAGCAATACTGAC 60.164 44.000 0.00 0.00 35.97 3.51
61 62 5.171339 AGACCATCAAAGCAATACTGACT 57.829 39.130 0.00 0.00 0.00 3.41
62 63 5.181748 AGACCATCAAAGCAATACTGACTC 58.818 41.667 0.00 0.00 0.00 3.36
63 64 5.046014 AGACCATCAAAGCAATACTGACTCT 60.046 40.000 0.00 0.00 0.00 3.24
64 65 5.564550 ACCATCAAAGCAATACTGACTCTT 58.435 37.500 0.00 0.00 0.00 2.85
65 66 6.711277 ACCATCAAAGCAATACTGACTCTTA 58.289 36.000 0.00 0.00 0.00 2.10
66 67 6.820656 ACCATCAAAGCAATACTGACTCTTAG 59.179 38.462 0.00 0.00 0.00 2.18
67 68 7.044181 CCATCAAAGCAATACTGACTCTTAGA 58.956 38.462 0.00 0.00 0.00 2.10
68 69 7.714377 CCATCAAAGCAATACTGACTCTTAGAT 59.286 37.037 0.00 0.00 0.00 1.98
69 70 8.549548 CATCAAAGCAATACTGACTCTTAGATG 58.450 37.037 0.00 0.00 0.00 2.90
70 71 7.615403 TCAAAGCAATACTGACTCTTAGATGT 58.385 34.615 0.00 0.00 0.00 3.06
71 72 8.749354 TCAAAGCAATACTGACTCTTAGATGTA 58.251 33.333 0.00 0.00 0.00 2.29
72 73 9.029243 CAAAGCAATACTGACTCTTAGATGTAG 57.971 37.037 0.00 0.00 0.00 2.74
73 74 7.889873 AGCAATACTGACTCTTAGATGTAGT 57.110 36.000 0.00 0.00 0.00 2.73
74 75 8.299990 AGCAATACTGACTCTTAGATGTAGTT 57.700 34.615 0.00 0.00 0.00 2.24
75 76 9.409918 AGCAATACTGACTCTTAGATGTAGTTA 57.590 33.333 0.00 0.00 0.00 2.24
80 81 8.057536 ACTGACTCTTAGATGTAGTTAAGTGG 57.942 38.462 0.00 0.00 0.00 4.00
81 82 7.889073 ACTGACTCTTAGATGTAGTTAAGTGGA 59.111 37.037 0.00 0.00 0.00 4.02
82 83 8.824756 TGACTCTTAGATGTAGTTAAGTGGAT 57.175 34.615 0.00 0.00 0.00 3.41
83 84 9.256228 TGACTCTTAGATGTAGTTAAGTGGATT 57.744 33.333 0.00 0.00 0.00 3.01
90 91 8.693120 AGATGTAGTTAAGTGGATTAGATCGA 57.307 34.615 0.00 0.00 0.00 3.59
91 92 9.132923 AGATGTAGTTAAGTGGATTAGATCGAA 57.867 33.333 0.00 0.00 0.00 3.71
92 93 9.400638 GATGTAGTTAAGTGGATTAGATCGAAG 57.599 37.037 0.00 0.00 0.00 3.79
93 94 7.713750 TGTAGTTAAGTGGATTAGATCGAAGG 58.286 38.462 0.00 0.00 0.00 3.46
94 95 6.163135 AGTTAAGTGGATTAGATCGAAGGG 57.837 41.667 0.00 0.00 0.00 3.95
95 96 5.661759 AGTTAAGTGGATTAGATCGAAGGGT 59.338 40.000 0.00 0.00 0.00 4.34
96 97 4.408182 AAGTGGATTAGATCGAAGGGTG 57.592 45.455 0.00 0.00 0.00 4.61
97 98 2.103263 AGTGGATTAGATCGAAGGGTGC 59.897 50.000 0.00 0.00 0.00 5.01
98 99 2.103263 GTGGATTAGATCGAAGGGTGCT 59.897 50.000 0.00 0.00 0.00 4.40
99 100 2.103094 TGGATTAGATCGAAGGGTGCTG 59.897 50.000 0.00 0.00 0.00 4.41
100 101 2.548920 GGATTAGATCGAAGGGTGCTGG 60.549 54.545 0.00 0.00 0.00 4.85
101 102 1.568504 TTAGATCGAAGGGTGCTGGT 58.431 50.000 0.00 0.00 0.00 4.00
102 103 1.568504 TAGATCGAAGGGTGCTGGTT 58.431 50.000 0.00 0.00 0.00 3.67
103 104 0.693049 AGATCGAAGGGTGCTGGTTT 59.307 50.000 0.00 0.00 0.00 3.27
104 105 1.087501 GATCGAAGGGTGCTGGTTTC 58.912 55.000 0.00 0.00 0.00 2.78
105 106 0.693049 ATCGAAGGGTGCTGGTTTCT 59.307 50.000 0.00 0.00 0.00 2.52
106 107 0.472471 TCGAAGGGTGCTGGTTTCTT 59.528 50.000 0.00 0.00 0.00 2.52
107 108 1.133915 TCGAAGGGTGCTGGTTTCTTT 60.134 47.619 0.00 0.00 0.00 2.52
108 109 1.001378 CGAAGGGTGCTGGTTTCTTTG 60.001 52.381 0.00 0.00 0.00 2.77
109 110 2.031870 GAAGGGTGCTGGTTTCTTTGT 58.968 47.619 0.00 0.00 0.00 2.83
110 111 1.402787 AGGGTGCTGGTTTCTTTGTG 58.597 50.000 0.00 0.00 0.00 3.33
111 112 1.111277 GGGTGCTGGTTTCTTTGTGT 58.889 50.000 0.00 0.00 0.00 3.72
112 113 2.092103 AGGGTGCTGGTTTCTTTGTGTA 60.092 45.455 0.00 0.00 0.00 2.90
113 114 2.034179 GGGTGCTGGTTTCTTTGTGTAC 59.966 50.000 0.00 0.00 0.00 2.90
114 115 2.685897 GGTGCTGGTTTCTTTGTGTACA 59.314 45.455 0.00 0.00 0.00 2.90
115 116 3.488553 GGTGCTGGTTTCTTTGTGTACAC 60.489 47.826 19.36 19.36 0.00 2.90
116 117 3.377172 GTGCTGGTTTCTTTGTGTACACT 59.623 43.478 25.60 0.00 0.00 3.55
117 118 4.013728 TGCTGGTTTCTTTGTGTACACTT 58.986 39.130 25.60 0.00 0.00 3.16
118 119 4.461081 TGCTGGTTTCTTTGTGTACACTTT 59.539 37.500 25.60 0.00 0.00 2.66
119 120 4.798387 GCTGGTTTCTTTGTGTACACTTTG 59.202 41.667 25.60 15.00 0.00 2.77
120 121 5.621329 GCTGGTTTCTTTGTGTACACTTTGT 60.621 40.000 25.60 0.00 0.00 2.83
121 122 5.704888 TGGTTTCTTTGTGTACACTTTGTG 58.295 37.500 25.60 11.84 39.75 3.33
122 123 5.099575 GGTTTCTTTGTGTACACTTTGTGG 58.900 41.667 25.60 10.57 37.94 4.17
123 124 5.336134 GGTTTCTTTGTGTACACTTTGTGGT 60.336 40.000 25.60 0.00 37.94 4.16
124 125 6.127952 GGTTTCTTTGTGTACACTTTGTGGTA 60.128 38.462 25.60 0.81 37.94 3.25
125 126 7.415877 GGTTTCTTTGTGTACACTTTGTGGTAT 60.416 37.037 25.60 0.00 37.94 2.73
126 127 6.612247 TCTTTGTGTACACTTTGTGGTATG 57.388 37.500 25.60 5.67 37.94 2.39
127 128 5.529430 TCTTTGTGTACACTTTGTGGTATGG 59.471 40.000 25.60 4.54 37.94 2.74
128 129 3.142951 TGTGTACACTTTGTGGTATGGC 58.857 45.455 25.60 0.00 37.94 4.40
129 130 3.181449 TGTGTACACTTTGTGGTATGGCT 60.181 43.478 25.60 0.00 37.94 4.75
130 131 3.818773 GTGTACACTTTGTGGTATGGCTT 59.181 43.478 18.92 0.00 37.94 4.35
131 132 4.277423 GTGTACACTTTGTGGTATGGCTTT 59.723 41.667 18.92 0.00 37.94 3.51
132 133 5.470777 GTGTACACTTTGTGGTATGGCTTTA 59.529 40.000 18.92 0.00 37.94 1.85
133 134 6.016943 GTGTACACTTTGTGGTATGGCTTTAA 60.017 38.462 18.92 0.00 37.94 1.52
134 135 5.705609 ACACTTTGTGGTATGGCTTTAAG 57.294 39.130 2.72 0.00 37.94 1.85
135 136 4.522789 ACACTTTGTGGTATGGCTTTAAGG 59.477 41.667 2.72 0.00 37.94 2.69
136 137 4.082245 CACTTTGTGGTATGGCTTTAAGGG 60.082 45.833 0.00 0.00 0.00 3.95
137 138 2.818751 TGTGGTATGGCTTTAAGGGG 57.181 50.000 0.00 0.00 0.00 4.79
138 139 2.280103 TGTGGTATGGCTTTAAGGGGA 58.720 47.619 0.00 0.00 0.00 4.81
139 140 2.856231 TGTGGTATGGCTTTAAGGGGAT 59.144 45.455 0.00 0.00 0.00 3.85
140 141 3.270960 TGTGGTATGGCTTTAAGGGGATT 59.729 43.478 0.00 0.00 0.00 3.01
141 142 4.264623 TGTGGTATGGCTTTAAGGGGATTT 60.265 41.667 0.00 0.00 0.00 2.17
142 143 4.714802 GTGGTATGGCTTTAAGGGGATTTT 59.285 41.667 0.00 0.00 0.00 1.82
143 144 5.188948 GTGGTATGGCTTTAAGGGGATTTTT 59.811 40.000 0.00 0.00 0.00 1.94
144 145 5.188751 TGGTATGGCTTTAAGGGGATTTTTG 59.811 40.000 0.00 0.00 0.00 2.44
145 146 5.188948 GGTATGGCTTTAAGGGGATTTTTGT 59.811 40.000 0.00 0.00 0.00 2.83
146 147 5.841267 ATGGCTTTAAGGGGATTTTTGTT 57.159 34.783 0.00 0.00 0.00 2.83
147 148 5.222079 TGGCTTTAAGGGGATTTTTGTTC 57.778 39.130 0.00 0.00 0.00 3.18
148 149 4.656112 TGGCTTTAAGGGGATTTTTGTTCA 59.344 37.500 0.00 0.00 0.00 3.18
149 150 4.994852 GGCTTTAAGGGGATTTTTGTTCAC 59.005 41.667 0.00 0.00 0.00 3.18
150 151 5.221641 GGCTTTAAGGGGATTTTTGTTCACT 60.222 40.000 0.00 0.00 0.00 3.41
151 152 5.926542 GCTTTAAGGGGATTTTTGTTCACTC 59.073 40.000 0.00 0.00 0.00 3.51
152 153 6.239317 GCTTTAAGGGGATTTTTGTTCACTCT 60.239 38.462 0.00 0.00 0.00 3.24
153 154 7.669089 TTTAAGGGGATTTTTGTTCACTCTT 57.331 32.000 0.00 0.00 0.00 2.85
154 155 7.669089 TTAAGGGGATTTTTGTTCACTCTTT 57.331 32.000 0.00 0.00 0.00 2.52
155 156 6.560003 AAGGGGATTTTTGTTCACTCTTTT 57.440 33.333 0.00 0.00 0.00 2.27
156 157 7.669089 AAGGGGATTTTTGTTCACTCTTTTA 57.331 32.000 0.00 0.00 0.00 1.52
157 158 7.669089 AGGGGATTTTTGTTCACTCTTTTAA 57.331 32.000 0.00 0.00 0.00 1.52
158 159 8.262601 AGGGGATTTTTGTTCACTCTTTTAAT 57.737 30.769 0.00 0.00 0.00 1.40
159 160 9.374711 AGGGGATTTTTGTTCACTCTTTTAATA 57.625 29.630 0.00 0.00 0.00 0.98
160 161 9.639601 GGGGATTTTTGTTCACTCTTTTAATAG 57.360 33.333 0.00 0.00 0.00 1.73
190 191 8.924511 AGAGAAGAGAAGTAGAGATTAGATGG 57.075 38.462 0.00 0.00 0.00 3.51
191 192 8.723365 AGAGAAGAGAAGTAGAGATTAGATGGA 58.277 37.037 0.00 0.00 0.00 3.41
192 193 9.520515 GAGAAGAGAAGTAGAGATTAGATGGAT 57.479 37.037 0.00 0.00 0.00 3.41
193 194 9.881773 AGAAGAGAAGTAGAGATTAGATGGATT 57.118 33.333 0.00 0.00 0.00 3.01
204 205 8.754080 AGAGATTAGATGGATTAAATCGTAGGG 58.246 37.037 0.00 0.00 34.31 3.53
205 206 7.331791 AGATTAGATGGATTAAATCGTAGGGC 58.668 38.462 0.00 0.00 34.31 5.19
206 207 6.681729 TTAGATGGATTAAATCGTAGGGCT 57.318 37.500 0.00 0.00 0.00 5.19
207 208 4.899502 AGATGGATTAAATCGTAGGGCTG 58.100 43.478 0.00 0.00 0.00 4.85
208 209 4.348168 AGATGGATTAAATCGTAGGGCTGT 59.652 41.667 0.00 0.00 0.00 4.40
209 210 3.804036 TGGATTAAATCGTAGGGCTGTG 58.196 45.455 0.00 0.00 0.00 3.66
210 211 2.548480 GGATTAAATCGTAGGGCTGTGC 59.452 50.000 0.00 0.00 0.00 4.57
211 212 3.467803 GATTAAATCGTAGGGCTGTGCT 58.532 45.455 0.00 0.00 0.00 4.40
212 213 3.343941 TTAAATCGTAGGGCTGTGCTT 57.656 42.857 0.00 0.00 0.00 3.91
213 214 1.453155 AAATCGTAGGGCTGTGCTTG 58.547 50.000 0.00 0.00 0.00 4.01
214 215 0.324943 AATCGTAGGGCTGTGCTTGT 59.675 50.000 0.00 0.00 0.00 3.16
215 216 0.324943 ATCGTAGGGCTGTGCTTGTT 59.675 50.000 0.00 0.00 0.00 2.83
216 217 0.320421 TCGTAGGGCTGTGCTTGTTC 60.320 55.000 0.00 0.00 0.00 3.18
217 218 0.320771 CGTAGGGCTGTGCTTGTTCT 60.321 55.000 0.00 0.00 0.00 3.01
218 219 1.160137 GTAGGGCTGTGCTTGTTCTG 58.840 55.000 0.00 0.00 0.00 3.02
219 220 0.764890 TAGGGCTGTGCTTGTTCTGT 59.235 50.000 0.00 0.00 0.00 3.41
220 221 0.820891 AGGGCTGTGCTTGTTCTGTG 60.821 55.000 0.00 0.00 0.00 3.66
221 222 1.103398 GGGCTGTGCTTGTTCTGTGT 61.103 55.000 0.00 0.00 0.00 3.72
222 223 1.593196 GGCTGTGCTTGTTCTGTGTA 58.407 50.000 0.00 0.00 0.00 2.90
223 224 1.264288 GGCTGTGCTTGTTCTGTGTAC 59.736 52.381 0.00 0.00 0.00 2.90
224 225 1.939934 GCTGTGCTTGTTCTGTGTACA 59.060 47.619 0.00 0.00 0.00 2.90
225 226 2.286418 GCTGTGCTTGTTCTGTGTACAC 60.286 50.000 19.36 19.36 0.00 2.90
226 227 3.198068 CTGTGCTTGTTCTGTGTACACT 58.802 45.455 25.60 0.00 0.00 3.55
227 228 4.368315 CTGTGCTTGTTCTGTGTACACTA 58.632 43.478 25.60 12.00 0.00 2.74
228 229 4.956085 TGTGCTTGTTCTGTGTACACTAT 58.044 39.130 25.60 0.00 0.00 2.12
229 230 5.364778 TGTGCTTGTTCTGTGTACACTATT 58.635 37.500 25.60 0.00 0.00 1.73
230 231 5.236263 TGTGCTTGTTCTGTGTACACTATTG 59.764 40.000 25.60 13.41 0.00 1.90
231 232 5.236478 GTGCTTGTTCTGTGTACACTATTGT 59.764 40.000 25.60 0.00 40.02 2.71
232 233 5.820423 TGCTTGTTCTGTGTACACTATTGTT 59.180 36.000 25.60 0.00 37.15 2.83
233 234 6.136071 GCTTGTTCTGTGTACACTATTGTTG 58.864 40.000 25.60 12.57 37.15 3.33
234 235 6.612247 TTGTTCTGTGTACACTATTGTTGG 57.388 37.500 25.60 6.92 37.15 3.77
235 236 5.676552 TGTTCTGTGTACACTATTGTTGGT 58.323 37.500 25.60 0.00 37.15 3.67
236 237 5.525745 TGTTCTGTGTACACTATTGTTGGTG 59.474 40.000 25.60 4.71 40.00 4.17
237 238 4.637276 TCTGTGTACACTATTGTTGGTGG 58.363 43.478 25.60 3.37 38.56 4.61
238 239 3.142951 TGTGTACACTATTGTTGGTGGC 58.857 45.455 25.60 0.00 38.56 5.01
239 240 3.181449 TGTGTACACTATTGTTGGTGGCT 60.181 43.478 25.60 0.00 38.56 4.75
240 241 3.818773 GTGTACACTATTGTTGGTGGCTT 59.181 43.478 18.92 0.00 38.56 4.35
241 242 4.277423 GTGTACACTATTGTTGGTGGCTTT 59.723 41.667 18.92 0.00 38.56 3.51
242 243 5.470777 GTGTACACTATTGTTGGTGGCTTTA 59.529 40.000 18.92 0.00 38.56 1.85
243 244 5.703592 TGTACACTATTGTTGGTGGCTTTAG 59.296 40.000 0.00 0.00 38.56 1.85
244 245 4.980573 ACACTATTGTTGGTGGCTTTAGA 58.019 39.130 0.00 0.00 38.56 2.10
245 246 5.381757 ACACTATTGTTGGTGGCTTTAGAA 58.618 37.500 0.00 0.00 38.56 2.10
246 247 5.473504 ACACTATTGTTGGTGGCTTTAGAAG 59.526 40.000 0.00 0.00 38.56 2.85
247 248 5.705441 CACTATTGTTGGTGGCTTTAGAAGA 59.295 40.000 0.00 0.00 31.13 2.87
248 249 6.206634 CACTATTGTTGGTGGCTTTAGAAGAA 59.793 38.462 0.00 0.00 31.13 2.52
249 250 6.948309 ACTATTGTTGGTGGCTTTAGAAGAAT 59.052 34.615 0.00 0.00 0.00 2.40
250 251 6.670695 ATTGTTGGTGGCTTTAGAAGAATT 57.329 33.333 0.00 0.00 0.00 2.17
251 252 6.478512 TTGTTGGTGGCTTTAGAAGAATTT 57.521 33.333 0.00 0.00 0.00 1.82
252 253 7.589958 TTGTTGGTGGCTTTAGAAGAATTTA 57.410 32.000 0.00 0.00 0.00 1.40
253 254 7.214467 TGTTGGTGGCTTTAGAAGAATTTAG 57.786 36.000 0.00 0.00 0.00 1.85
254 255 6.775629 TGTTGGTGGCTTTAGAAGAATTTAGT 59.224 34.615 0.00 0.00 0.00 2.24
257 258 6.148811 TGGTGGCTTTAGAAGAATTTAGTTCG 59.851 38.462 0.00 0.00 41.84 3.95
262 263 6.183360 GCTTTAGAAGAATTTAGTTCGCTCGT 60.183 38.462 0.00 0.00 41.84 4.18
277 278 1.936547 GCTCGTCCTATTCAAAGCTGG 59.063 52.381 0.00 0.00 0.00 4.85
280 281 2.093658 TCGTCCTATTCAAAGCTGGACC 60.094 50.000 10.59 0.00 42.88 4.46
300 304 0.981183 GGTGACATGGTACCAGGTGA 59.019 55.000 35.11 25.58 41.23 4.02
350 355 8.220559 TGAAGGGAAAATTAAGATATGAGGAGG 58.779 37.037 0.00 0.00 0.00 4.30
424 436 8.178964 TCACGACTTATGTGGCATAATTTTTAC 58.821 33.333 0.00 0.00 37.91 2.01
425 437 8.181573 CACGACTTATGTGGCATAATTTTTACT 58.818 33.333 0.00 0.00 33.69 2.24
591 626 9.887406 AATGGTTACGAGTACTTTTTGTTTATG 57.113 29.630 0.00 0.00 0.00 1.90
592 627 8.436046 TGGTTACGAGTACTTTTTGTTTATGT 57.564 30.769 0.00 0.00 0.00 2.29
598 633 9.275398 ACGAGTACTTTTTGTTTATGTAATGGA 57.725 29.630 0.00 0.00 0.00 3.41
617 652 9.631639 GTAATGGAAATATTTACAAAATTGCGC 57.368 29.630 16.96 0.00 34.09 6.09
618 653 6.324522 TGGAAATATTTACAAAATTGCGCG 57.675 33.333 10.81 0.00 0.00 6.86
619 654 6.093404 TGGAAATATTTACAAAATTGCGCGA 58.907 32.000 12.10 0.00 0.00 5.87
620 655 6.586463 TGGAAATATTTACAAAATTGCGCGAA 59.414 30.769 12.10 0.00 0.00 4.70
621 656 6.892430 GGAAATATTTACAAAATTGCGCGAAC 59.108 34.615 12.10 0.00 0.00 3.95
622 657 6.936222 AATATTTACAAAATTGCGCGAACA 57.064 29.167 12.10 0.00 0.00 3.18
623 658 4.623122 ATTTACAAAATTGCGCGAACAC 57.377 36.364 12.10 0.00 0.00 3.32
624 659 2.757686 TACAAAATTGCGCGAACACA 57.242 40.000 12.10 0.00 0.00 3.72
625 660 2.132740 ACAAAATTGCGCGAACACAT 57.867 40.000 12.10 0.00 0.00 3.21
633 668 2.845486 TGCGCGAACACATTTTACATC 58.155 42.857 12.10 0.00 0.00 3.06
757 801 5.825679 ACACATGGACTTTTGTTAAGTAGCA 59.174 36.000 0.00 0.00 0.00 3.49
762 806 5.235616 TGGACTTTTGTTAAGTAGCACGAAG 59.764 40.000 0.00 0.00 0.00 3.79
765 809 7.307811 GGACTTTTGTTAAGTAGCACGAAGAAT 60.308 37.037 0.00 0.00 0.00 2.40
769 813 9.575783 TTTTGTTAAGTAGCACGAAGAATTTTT 57.424 25.926 0.00 0.00 0.00 1.94
785 829 7.209471 AGAATTTTTGAAATACACGTAGGCA 57.791 32.000 0.00 0.00 0.00 4.75
786 830 7.826690 AGAATTTTTGAAATACACGTAGGCAT 58.173 30.769 0.00 0.00 0.00 4.40
790 834 9.915629 ATTTTTGAAATACACGTAGGCATTTTA 57.084 25.926 0.00 0.00 0.00 1.52
793 837 9.915629 TTTGAAATACACGTAGGCATTTTAATT 57.084 25.926 0.00 0.00 0.00 1.40
794 838 9.915629 TTGAAATACACGTAGGCATTTTAATTT 57.084 25.926 0.00 0.00 0.00 1.82
795 839 9.915629 TGAAATACACGTAGGCATTTTAATTTT 57.084 25.926 0.00 0.00 0.00 1.82
848 892 9.994432 AATAGCGAAAAAGATGAAAATACTCTG 57.006 29.630 0.00 0.00 0.00 3.35
849 893 6.846350 AGCGAAAAAGATGAAAATACTCTGG 58.154 36.000 0.00 0.00 0.00 3.86
850 894 6.431234 AGCGAAAAAGATGAAAATACTCTGGT 59.569 34.615 0.00 0.00 0.00 4.00
851 895 7.040409 AGCGAAAAAGATGAAAATACTCTGGTT 60.040 33.333 0.00 0.00 0.00 3.67
852 896 7.595130 GCGAAAAAGATGAAAATACTCTGGTTT 59.405 33.333 0.00 0.00 0.00 3.27
853 897 9.118236 CGAAAAAGATGAAAATACTCTGGTTTC 57.882 33.333 0.00 0.00 32.92 2.78
854 898 9.118236 GAAAAAGATGAAAATACTCTGGTTTCG 57.882 33.333 0.00 0.00 34.63 3.46
856 900 7.602517 AAGATGAAAATACTCTGGTTTCGAG 57.397 36.000 0.00 0.00 34.63 4.04
858 902 7.560368 AGATGAAAATACTCTGGTTTCGAGAT 58.440 34.615 0.00 0.00 34.63 2.75
899 985 1.035932 GTAGCTGGGCTGTCCGACTA 61.036 60.000 0.00 0.00 40.10 2.59
900 986 1.035932 TAGCTGGGCTGTCCGACTAC 61.036 60.000 0.00 0.00 40.10 2.73
901 987 2.646175 GCTGGGCTGTCCGACTACA 61.646 63.158 0.00 0.00 38.76 2.74
904 990 0.830444 TGGGCTGTCCGACTACAAGT 60.830 55.000 0.00 0.00 38.76 3.16
905 991 1.180029 GGGCTGTCCGACTACAAGTA 58.820 55.000 0.00 0.00 0.00 2.24
907 993 1.469423 GGCTGTCCGACTACAAGTAGC 60.469 57.143 7.14 0.00 36.66 3.58
908 994 1.201647 GCTGTCCGACTACAAGTAGCA 59.798 52.381 7.14 0.00 36.66 3.49
910 996 3.243336 CTGTCCGACTACAAGTAGCAAC 58.757 50.000 7.14 2.14 36.66 4.17
911 997 2.624364 TGTCCGACTACAAGTAGCAACA 59.376 45.455 7.14 4.39 36.66 3.33
912 998 3.068448 TGTCCGACTACAAGTAGCAACAA 59.932 43.478 7.14 0.00 36.66 2.83
913 999 3.427863 GTCCGACTACAAGTAGCAACAAC 59.572 47.826 7.14 0.00 36.66 3.32
914 1000 2.735134 CCGACTACAAGTAGCAACAACC 59.265 50.000 7.14 0.00 36.66 3.77
916 1002 3.805422 CGACTACAAGTAGCAACAACCAA 59.195 43.478 7.14 0.00 36.66 3.67
919 1005 2.028876 ACAAGTAGCAACAACCAACCC 58.971 47.619 0.00 0.00 0.00 4.11
921 1007 1.981256 AGTAGCAACAACCAACCCTG 58.019 50.000 0.00 0.00 0.00 4.45
982 1178 2.158871 GGCGGGTATAACAATCTCACCA 60.159 50.000 0.00 0.00 0.00 4.17
985 1181 3.118555 CGGGTATAACAATCTCACCACCA 60.119 47.826 0.00 0.00 0.00 4.17
995 1191 1.774254 TCTCACCACCACCACAAGAAT 59.226 47.619 0.00 0.00 0.00 2.40
1032 1234 2.663196 GGGGAAGACGTGGTGGAG 59.337 66.667 0.00 0.00 0.00 3.86
1033 1235 2.663196 GGGAAGACGTGGTGGAGG 59.337 66.667 0.00 0.00 0.00 4.30
1034 1236 2.663196 GGAAGACGTGGTGGAGGG 59.337 66.667 0.00 0.00 0.00 4.30
1035 1237 2.663196 GAAGACGTGGTGGAGGGG 59.337 66.667 0.00 0.00 0.00 4.79
1036 1238 2.928396 AAGACGTGGTGGAGGGGG 60.928 66.667 0.00 0.00 0.00 5.40
1052 1254 2.840753 GGGGGCCTTGTCTGGTGAA 61.841 63.158 0.84 0.00 0.00 3.18
1135 1364 1.510492 TCAGATTGAGGCCATGGCTA 58.490 50.000 34.70 19.27 38.98 3.93
1254 1513 1.883084 GTATGGCGAGGTTGCGGAG 60.883 63.158 0.00 0.00 35.06 4.63
1261 1520 2.685380 AGGTTGCGGAGGAGGAGG 60.685 66.667 0.00 0.00 0.00 4.30
1320 1579 3.059884 GCAGATCAAGAACAAGACGACA 58.940 45.455 0.00 0.00 0.00 4.35
1340 1613 3.831651 CGGAGGAGATGGACCTAGT 57.168 57.895 0.00 0.00 37.93 2.57
1343 1616 2.593026 GGAGGAGATGGACCTAGTCAG 58.407 57.143 0.00 0.00 37.93 3.51
1351 1624 1.623811 TGGACCTAGTCAGAACAAGCC 59.376 52.381 0.00 0.00 33.68 4.35
1354 1627 0.108138 CCTAGTCAGAACAAGCCCCG 60.108 60.000 0.00 0.00 0.00 5.73
1366 1645 2.833582 GCCCCGTCATCTCCGAGA 60.834 66.667 0.00 0.00 0.00 4.04
1443 1722 0.036010 GGATCATACCATCAGCCCCG 60.036 60.000 0.00 0.00 0.00 5.73
1460 1739 3.664495 GCTCAGCAGCAGCAAAGA 58.336 55.556 3.17 0.00 46.06 2.52
1461 1740 1.502640 GCTCAGCAGCAGCAAAGAG 59.497 57.895 3.17 8.69 46.06 2.85
1463 1742 0.797542 CTCAGCAGCAGCAAAGAGAC 59.202 55.000 3.17 0.00 45.49 3.36
1464 1743 0.395686 TCAGCAGCAGCAAAGAGACT 59.604 50.000 3.17 0.00 45.49 3.24
1465 1744 0.517755 CAGCAGCAGCAAAGAGACTG 59.482 55.000 3.17 0.00 45.49 3.51
1466 1745 0.395686 AGCAGCAGCAAAGAGACTGA 59.604 50.000 3.17 0.00 45.49 3.41
1468 1747 1.197264 GCAGCAGCAAAGAGACTGAAG 59.803 52.381 0.00 0.00 41.58 3.02
1474 1771 5.046735 AGCAGCAAAGAGACTGAAGAAGATA 60.047 40.000 0.00 0.00 35.90 1.98
1486 1786 3.513912 TGAAGAAGATAAGGACAAGGCGA 59.486 43.478 0.00 0.00 0.00 5.54
1692 2082 0.175073 ATTCCTACCGTCAAGGCGTC 59.825 55.000 0.00 0.00 46.52 5.19
1764 2282 6.564709 TTGTATGATTCCTATCAATGCAGC 57.435 37.500 0.00 0.00 43.67 5.25
1765 2283 5.872963 TGTATGATTCCTATCAATGCAGCT 58.127 37.500 0.00 0.00 43.67 4.24
1766 2284 5.704053 TGTATGATTCCTATCAATGCAGCTG 59.296 40.000 10.11 10.11 43.67 4.24
1771 2289 4.426736 TCCTATCAATGCAGCTGATTCA 57.573 40.909 20.43 6.41 35.21 2.57
1772 2290 4.784177 TCCTATCAATGCAGCTGATTCAA 58.216 39.130 20.43 5.60 35.21 2.69
1824 4819 8.656849 GTTTATTAGGATCGATCGCATGTTAAT 58.343 33.333 18.81 15.32 0.00 1.40
2021 5462 1.336148 CCACTCAAAGTGTACGGCGTA 60.336 52.381 16.97 16.97 44.50 4.42
2042 5483 4.178861 GCCGCACGAGACAATGTA 57.821 55.556 0.00 0.00 0.00 2.29
2168 5617 2.063266 CTTTGTTGCATGCATGTGTCC 58.937 47.619 26.79 11.44 0.00 4.02
2192 5642 2.986479 GTTTGTTGATCCATCGGTTTGC 59.014 45.455 0.00 0.00 0.00 3.68
2214 5668 3.967401 TGCAATTCATTCAGTGTGTGTG 58.033 40.909 0.00 0.00 0.00 3.82
2360 5814 3.371898 CAGCGTGTTGATCAATAGCAGAA 59.628 43.478 24.42 0.00 0.00 3.02
2380 5834 3.194005 AGCCATTACGGTGGTTATCAG 57.806 47.619 5.78 0.00 41.47 2.90
2924 6421 3.931907 TTCTGTGAGGGGGATATGTTG 57.068 47.619 0.00 0.00 0.00 3.33
3014 6999 4.245660 AGATGTTTGACTGTGTGTATCGG 58.754 43.478 0.00 0.00 0.00 4.18
3050 7037 4.576463 GGCCAAGTCTAGATGGTGTATTTG 59.424 45.833 12.88 0.00 39.00 2.32
3216 7219 7.921786 TCTGTTACAACTAGAATCAAATGGG 57.078 36.000 0.00 0.00 0.00 4.00
3225 7228 4.871933 AGAATCAAATGGGTGTGGTTTC 57.128 40.909 0.00 0.00 0.00 2.78
3243 7246 0.532573 TCCTAGGAACTTGAGCTGCG 59.467 55.000 9.71 0.00 41.75 5.18
3287 7291 3.550820 TGTCTTGCTTAAAACCTCTGCA 58.449 40.909 0.00 0.00 0.00 4.41
3356 7387 1.967319 TGTCAACTTGCTCCTGAACC 58.033 50.000 0.00 0.00 0.00 3.62
3365 7396 1.002430 TGCTCCTGAACCACTGATCAC 59.998 52.381 0.00 0.00 0.00 3.06
3397 7428 1.896220 TGTGATCAACTTGGTGCTCC 58.104 50.000 0.00 0.00 0.00 4.70
3422 7453 2.488952 TGCTGCAGAACGTTATGACAA 58.511 42.857 26.06 9.74 0.00 3.18
3425 7456 4.201960 TGCTGCAGAACGTTATGACAAAAA 60.202 37.500 26.06 8.92 0.00 1.94
3467 7504 3.211865 GCTACCCTTTGCCCAGTTATAC 58.788 50.000 0.00 0.00 0.00 1.47
3502 7543 2.943036 TTCCCAGTAGGTGGTTGTTC 57.057 50.000 0.00 0.00 46.37 3.18
3516 7557 5.025826 GTGGTTGTTCGTTTGTTCAAGTAG 58.974 41.667 0.00 0.00 0.00 2.57
3517 7558 4.936411 TGGTTGTTCGTTTGTTCAAGTAGA 59.064 37.500 0.00 0.00 0.00 2.59
3535 7594 2.292267 AGACCAAGCTTTGTGTGTCTG 58.708 47.619 8.09 0.00 32.22 3.51
3549 7608 4.743151 TGTGTGTCTGTCGACTACAAATTC 59.257 41.667 20.84 12.05 40.86 2.17
3554 7613 7.707464 TGTGTCTGTCGACTACAAATTCTTAAA 59.293 33.333 20.84 0.00 40.86 1.52
3690 7754 8.391075 TCCTTTGTTCCTTTTATGTTGTAGAG 57.609 34.615 0.00 0.00 0.00 2.43
3691 7755 8.215050 TCCTTTGTTCCTTTTATGTTGTAGAGA 58.785 33.333 0.00 0.00 0.00 3.10
3714 7780 9.416794 GAGACTTACATGGTATATGTCATTCAG 57.583 37.037 0.00 0.00 32.04 3.02
3778 7844 5.372661 AGAAGCCTTGCCCTCCTATTTTATA 59.627 40.000 0.00 0.00 0.00 0.98
3782 7848 5.516591 GCCTTGCCCTCCTATTTTATATCCA 60.517 44.000 0.00 0.00 0.00 3.41
3808 7874 5.730550 ACCGTTTCTATCATCAGTTTAGCA 58.269 37.500 0.00 0.00 0.00 3.49
3827 7893 8.363029 GTTTAGCAAACTATATGTTTTTCACGC 58.637 33.333 5.00 0.00 45.69 5.34
3842 7908 0.378962 CACGCCGGTTTTCTTGAACA 59.621 50.000 1.90 0.00 0.00 3.18
3874 7940 8.727910 TGAAAATCTGAATGTGAGATCTCAAAG 58.272 33.333 26.70 17.52 41.85 2.77
3875 7941 7.627298 AAATCTGAATGTGAGATCTCAAAGG 57.373 36.000 26.70 12.88 41.85 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.176271 GCCAAGATTTAATGTTCTGCCAC 58.824 43.478 0.00 0.00 0.00 5.01
1 2 3.195396 GGCCAAGATTTAATGTTCTGCCA 59.805 43.478 15.43 0.00 33.32 4.92
4 5 6.632909 TCAATGGCCAAGATTTAATGTTCTG 58.367 36.000 10.96 0.00 0.00 3.02
5 6 6.855763 TCAATGGCCAAGATTTAATGTTCT 57.144 33.333 10.96 0.00 0.00 3.01
6 7 8.496707 AATTCAATGGCCAAGATTTAATGTTC 57.503 30.769 10.96 0.00 0.00 3.18
7 8 9.603921 CTAATTCAATGGCCAAGATTTAATGTT 57.396 29.630 10.96 0.00 0.00 2.71
8 9 8.980596 TCTAATTCAATGGCCAAGATTTAATGT 58.019 29.630 10.96 0.00 0.00 2.71
9 10 9.991906 ATCTAATTCAATGGCCAAGATTTAATG 57.008 29.630 10.96 7.59 0.00 1.90
10 11 9.991906 CATCTAATTCAATGGCCAAGATTTAAT 57.008 29.630 10.96 0.00 0.00 1.40
11 12 8.423349 CCATCTAATTCAATGGCCAAGATTTAA 58.577 33.333 10.96 0.00 36.31 1.52
12 13 7.784073 TCCATCTAATTCAATGGCCAAGATTTA 59.216 33.333 10.96 15.80 41.88 1.40
13 14 6.612456 TCCATCTAATTCAATGGCCAAGATTT 59.388 34.615 10.96 15.52 41.88 2.17
14 15 6.138263 TCCATCTAATTCAATGGCCAAGATT 58.862 36.000 10.96 10.32 41.88 2.40
15 16 5.708544 TCCATCTAATTCAATGGCCAAGAT 58.291 37.500 10.96 9.00 41.88 2.40
16 17 5.128033 TCCATCTAATTCAATGGCCAAGA 57.872 39.130 10.96 8.62 41.88 3.02
17 18 5.595542 TCTTCCATCTAATTCAATGGCCAAG 59.404 40.000 10.96 5.73 41.88 3.61
18 19 5.360714 GTCTTCCATCTAATTCAATGGCCAA 59.639 40.000 10.96 0.00 41.88 4.52
19 20 4.889409 GTCTTCCATCTAATTCAATGGCCA 59.111 41.667 8.56 8.56 41.88 5.36
20 21 4.279420 GGTCTTCCATCTAATTCAATGGCC 59.721 45.833 12.22 0.00 41.88 5.36
21 22 4.889409 TGGTCTTCCATCTAATTCAATGGC 59.111 41.667 12.22 1.79 41.88 4.40
36 37 4.943705 TCAGTATTGCTTTGATGGTCTTCC 59.056 41.667 0.00 0.00 0.00 3.46
37 38 5.645497 AGTCAGTATTGCTTTGATGGTCTTC 59.355 40.000 0.00 0.00 0.00 2.87
38 39 5.564550 AGTCAGTATTGCTTTGATGGTCTT 58.435 37.500 0.00 0.00 0.00 3.01
39 40 5.046014 AGAGTCAGTATTGCTTTGATGGTCT 60.046 40.000 0.00 0.00 0.00 3.85
40 41 5.181748 AGAGTCAGTATTGCTTTGATGGTC 58.818 41.667 0.00 0.00 0.00 4.02
41 42 5.171339 AGAGTCAGTATTGCTTTGATGGT 57.829 39.130 0.00 0.00 0.00 3.55
42 43 7.044181 TCTAAGAGTCAGTATTGCTTTGATGG 58.956 38.462 0.00 0.00 0.00 3.51
43 44 8.549548 CATCTAAGAGTCAGTATTGCTTTGATG 58.450 37.037 0.00 0.00 40.00 3.07
44 45 8.263640 ACATCTAAGAGTCAGTATTGCTTTGAT 58.736 33.333 0.00 0.00 33.53 2.57
45 46 7.615403 ACATCTAAGAGTCAGTATTGCTTTGA 58.385 34.615 0.00 0.00 0.00 2.69
46 47 7.840342 ACATCTAAGAGTCAGTATTGCTTTG 57.160 36.000 0.00 0.00 0.00 2.77
47 48 8.754080 ACTACATCTAAGAGTCAGTATTGCTTT 58.246 33.333 0.00 0.00 0.00 3.51
48 49 8.299990 ACTACATCTAAGAGTCAGTATTGCTT 57.700 34.615 0.00 0.00 0.00 3.91
49 50 7.889873 ACTACATCTAAGAGTCAGTATTGCT 57.110 36.000 0.00 0.00 0.00 3.91
54 55 9.175312 CCACTTAACTACATCTAAGAGTCAGTA 57.825 37.037 0.00 0.00 0.00 2.74
55 56 7.889073 TCCACTTAACTACATCTAAGAGTCAGT 59.111 37.037 0.00 0.00 0.00 3.41
56 57 8.282455 TCCACTTAACTACATCTAAGAGTCAG 57.718 38.462 0.00 0.00 0.00 3.51
57 58 8.824756 ATCCACTTAACTACATCTAAGAGTCA 57.175 34.615 0.00 0.00 0.00 3.41
64 65 9.788889 TCGATCTAATCCACTTAACTACATCTA 57.211 33.333 0.00 0.00 0.00 1.98
65 66 8.693120 TCGATCTAATCCACTTAACTACATCT 57.307 34.615 0.00 0.00 0.00 2.90
66 67 9.400638 CTTCGATCTAATCCACTTAACTACATC 57.599 37.037 0.00 0.00 0.00 3.06
67 68 8.361139 CCTTCGATCTAATCCACTTAACTACAT 58.639 37.037 0.00 0.00 0.00 2.29
68 69 7.201884 CCCTTCGATCTAATCCACTTAACTACA 60.202 40.741 0.00 0.00 0.00 2.74
69 70 7.146648 CCCTTCGATCTAATCCACTTAACTAC 58.853 42.308 0.00 0.00 0.00 2.73
70 71 6.837568 ACCCTTCGATCTAATCCACTTAACTA 59.162 38.462 0.00 0.00 0.00 2.24
71 72 5.661759 ACCCTTCGATCTAATCCACTTAACT 59.338 40.000 0.00 0.00 0.00 2.24
72 73 5.753921 CACCCTTCGATCTAATCCACTTAAC 59.246 44.000 0.00 0.00 0.00 2.01
73 74 5.684030 GCACCCTTCGATCTAATCCACTTAA 60.684 44.000 0.00 0.00 0.00 1.85
74 75 4.202223 GCACCCTTCGATCTAATCCACTTA 60.202 45.833 0.00 0.00 0.00 2.24
75 76 3.432326 GCACCCTTCGATCTAATCCACTT 60.432 47.826 0.00 0.00 0.00 3.16
76 77 2.103263 GCACCCTTCGATCTAATCCACT 59.897 50.000 0.00 0.00 0.00 4.00
77 78 2.103263 AGCACCCTTCGATCTAATCCAC 59.897 50.000 0.00 0.00 0.00 4.02
78 79 2.103094 CAGCACCCTTCGATCTAATCCA 59.897 50.000 0.00 0.00 0.00 3.41
79 80 2.548920 CCAGCACCCTTCGATCTAATCC 60.549 54.545 0.00 0.00 0.00 3.01
80 81 2.103263 ACCAGCACCCTTCGATCTAATC 59.897 50.000 0.00 0.00 0.00 1.75
81 82 2.119495 ACCAGCACCCTTCGATCTAAT 58.881 47.619 0.00 0.00 0.00 1.73
82 83 1.568504 ACCAGCACCCTTCGATCTAA 58.431 50.000 0.00 0.00 0.00 2.10
83 84 1.568504 AACCAGCACCCTTCGATCTA 58.431 50.000 0.00 0.00 0.00 1.98
84 85 0.693049 AAACCAGCACCCTTCGATCT 59.307 50.000 0.00 0.00 0.00 2.75
85 86 1.087501 GAAACCAGCACCCTTCGATC 58.912 55.000 0.00 0.00 0.00 3.69
86 87 0.693049 AGAAACCAGCACCCTTCGAT 59.307 50.000 0.00 0.00 0.00 3.59
87 88 0.472471 AAGAAACCAGCACCCTTCGA 59.528 50.000 0.00 0.00 0.00 3.71
88 89 1.001378 CAAAGAAACCAGCACCCTTCG 60.001 52.381 0.00 0.00 0.00 3.79
89 90 2.031870 ACAAAGAAACCAGCACCCTTC 58.968 47.619 0.00 0.00 0.00 3.46
90 91 1.756538 CACAAAGAAACCAGCACCCTT 59.243 47.619 0.00 0.00 0.00 3.95
91 92 1.341976 ACACAAAGAAACCAGCACCCT 60.342 47.619 0.00 0.00 0.00 4.34
92 93 1.111277 ACACAAAGAAACCAGCACCC 58.889 50.000 0.00 0.00 0.00 4.61
93 94 2.685897 TGTACACAAAGAAACCAGCACC 59.314 45.455 0.00 0.00 0.00 5.01
94 95 3.377172 AGTGTACACAAAGAAACCAGCAC 59.623 43.478 27.06 0.00 0.00 4.40
95 96 3.616219 AGTGTACACAAAGAAACCAGCA 58.384 40.909 27.06 0.00 0.00 4.41
96 97 4.632538 AAGTGTACACAAAGAAACCAGC 57.367 40.909 27.06 0.00 0.00 4.85
97 98 5.799936 CACAAAGTGTACACAAAGAAACCAG 59.200 40.000 27.06 7.62 0.00 4.00
98 99 5.336055 CCACAAAGTGTACACAAAGAAACCA 60.336 40.000 27.06 0.00 0.00 3.67
99 100 5.099575 CCACAAAGTGTACACAAAGAAACC 58.900 41.667 27.06 0.00 0.00 3.27
100 101 5.705902 ACCACAAAGTGTACACAAAGAAAC 58.294 37.500 27.06 0.00 0.00 2.78
101 102 5.968528 ACCACAAAGTGTACACAAAGAAA 57.031 34.783 27.06 0.00 0.00 2.52
102 103 6.038825 CCATACCACAAAGTGTACACAAAGAA 59.961 38.462 27.06 5.85 0.00 2.52
103 104 5.529430 CCATACCACAAAGTGTACACAAAGA 59.471 40.000 27.06 5.05 0.00 2.52
104 105 5.757886 CCATACCACAAAGTGTACACAAAG 58.242 41.667 27.06 17.30 0.00 2.77
105 106 4.036971 GCCATACCACAAAGTGTACACAAA 59.963 41.667 27.06 4.26 0.00 2.83
106 107 3.566322 GCCATACCACAAAGTGTACACAA 59.434 43.478 27.06 3.26 0.00 3.33
107 108 3.142951 GCCATACCACAAAGTGTACACA 58.857 45.455 27.06 4.82 0.00 3.72
108 109 3.408634 AGCCATACCACAAAGTGTACAC 58.591 45.455 18.56 18.56 0.00 2.90
109 110 3.780804 AGCCATACCACAAAGTGTACA 57.219 42.857 0.00 0.00 0.00 2.90
110 111 6.349033 CCTTAAAGCCATACCACAAAGTGTAC 60.349 42.308 0.00 0.00 0.00 2.90
111 112 5.708230 CCTTAAAGCCATACCACAAAGTGTA 59.292 40.000 0.00 0.00 0.00 2.90
112 113 4.522789 CCTTAAAGCCATACCACAAAGTGT 59.477 41.667 0.00 0.00 0.00 3.55
113 114 4.082245 CCCTTAAAGCCATACCACAAAGTG 60.082 45.833 0.00 0.00 0.00 3.16
114 115 4.086457 CCCTTAAAGCCATACCACAAAGT 58.914 43.478 0.00 0.00 0.00 2.66
115 116 3.447229 CCCCTTAAAGCCATACCACAAAG 59.553 47.826 0.00 0.00 0.00 2.77
116 117 3.076182 TCCCCTTAAAGCCATACCACAAA 59.924 43.478 0.00 0.00 0.00 2.83
117 118 2.650322 TCCCCTTAAAGCCATACCACAA 59.350 45.455 0.00 0.00 0.00 3.33
118 119 2.280103 TCCCCTTAAAGCCATACCACA 58.720 47.619 0.00 0.00 0.00 4.17
119 120 3.595190 ATCCCCTTAAAGCCATACCAC 57.405 47.619 0.00 0.00 0.00 4.16
120 121 4.618378 AAATCCCCTTAAAGCCATACCA 57.382 40.909 0.00 0.00 0.00 3.25
121 122 5.188948 ACAAAAATCCCCTTAAAGCCATACC 59.811 40.000 0.00 0.00 0.00 2.73
122 123 6.294361 ACAAAAATCCCCTTAAAGCCATAC 57.706 37.500 0.00 0.00 0.00 2.39
123 124 6.498651 TGAACAAAAATCCCCTTAAAGCCATA 59.501 34.615 0.00 0.00 0.00 2.74
124 125 5.309282 TGAACAAAAATCCCCTTAAAGCCAT 59.691 36.000 0.00 0.00 0.00 4.40
125 126 4.656112 TGAACAAAAATCCCCTTAAAGCCA 59.344 37.500 0.00 0.00 0.00 4.75
126 127 4.994852 GTGAACAAAAATCCCCTTAAAGCC 59.005 41.667 0.00 0.00 0.00 4.35
127 128 5.853936 AGTGAACAAAAATCCCCTTAAAGC 58.146 37.500 0.00 0.00 0.00 3.51
128 129 7.290110 AGAGTGAACAAAAATCCCCTTAAAG 57.710 36.000 0.00 0.00 0.00 1.85
129 130 7.669089 AAGAGTGAACAAAAATCCCCTTAAA 57.331 32.000 0.00 0.00 0.00 1.52
130 131 7.669089 AAAGAGTGAACAAAAATCCCCTTAA 57.331 32.000 0.00 0.00 0.00 1.85
131 132 7.669089 AAAAGAGTGAACAAAAATCCCCTTA 57.331 32.000 0.00 0.00 0.00 2.69
132 133 6.560003 AAAAGAGTGAACAAAAATCCCCTT 57.440 33.333 0.00 0.00 0.00 3.95
133 134 7.669089 TTAAAAGAGTGAACAAAAATCCCCT 57.331 32.000 0.00 0.00 0.00 4.79
134 135 9.639601 CTATTAAAAGAGTGAACAAAAATCCCC 57.360 33.333 0.00 0.00 0.00 4.81
165 166 8.723365 TCCATCTAATCTCTACTTCTCTTCTCT 58.277 37.037 0.00 0.00 0.00 3.10
166 167 8.918202 TCCATCTAATCTCTACTTCTCTTCTC 57.082 38.462 0.00 0.00 0.00 2.87
167 168 9.881773 AATCCATCTAATCTCTACTTCTCTTCT 57.118 33.333 0.00 0.00 0.00 2.85
178 179 8.754080 CCCTACGATTTAATCCATCTAATCTCT 58.246 37.037 0.00 0.00 0.00 3.10
179 180 7.492994 GCCCTACGATTTAATCCATCTAATCTC 59.507 40.741 0.00 0.00 0.00 2.75
180 181 7.181125 AGCCCTACGATTTAATCCATCTAATCT 59.819 37.037 0.00 0.00 0.00 2.40
181 182 7.278868 CAGCCCTACGATTTAATCCATCTAATC 59.721 40.741 0.00 0.00 0.00 1.75
182 183 7.106239 CAGCCCTACGATTTAATCCATCTAAT 58.894 38.462 0.00 0.00 0.00 1.73
183 184 6.042781 ACAGCCCTACGATTTAATCCATCTAA 59.957 38.462 0.00 0.00 0.00 2.10
184 185 5.542635 ACAGCCCTACGATTTAATCCATCTA 59.457 40.000 0.00 0.00 0.00 1.98
185 186 4.348168 ACAGCCCTACGATTTAATCCATCT 59.652 41.667 0.00 0.00 0.00 2.90
186 187 4.452455 CACAGCCCTACGATTTAATCCATC 59.548 45.833 0.00 0.00 0.00 3.51
187 188 4.389374 CACAGCCCTACGATTTAATCCAT 58.611 43.478 0.00 0.00 0.00 3.41
188 189 3.804036 CACAGCCCTACGATTTAATCCA 58.196 45.455 0.00 0.00 0.00 3.41
189 190 2.548480 GCACAGCCCTACGATTTAATCC 59.452 50.000 0.00 0.00 0.00 3.01
190 191 3.467803 AGCACAGCCCTACGATTTAATC 58.532 45.455 0.00 0.00 0.00 1.75
191 192 3.560636 AGCACAGCCCTACGATTTAAT 57.439 42.857 0.00 0.00 0.00 1.40
192 193 3.006940 CAAGCACAGCCCTACGATTTAA 58.993 45.455 0.00 0.00 0.00 1.52
193 194 2.027561 ACAAGCACAGCCCTACGATTTA 60.028 45.455 0.00 0.00 0.00 1.40
194 195 1.271379 ACAAGCACAGCCCTACGATTT 60.271 47.619 0.00 0.00 0.00 2.17
195 196 0.324943 ACAAGCACAGCCCTACGATT 59.675 50.000 0.00 0.00 0.00 3.34
196 197 0.324943 AACAAGCACAGCCCTACGAT 59.675 50.000 0.00 0.00 0.00 3.73
197 198 0.320421 GAACAAGCACAGCCCTACGA 60.320 55.000 0.00 0.00 0.00 3.43
198 199 0.320771 AGAACAAGCACAGCCCTACG 60.321 55.000 0.00 0.00 0.00 3.51
199 200 1.160137 CAGAACAAGCACAGCCCTAC 58.840 55.000 0.00 0.00 0.00 3.18
200 201 0.764890 ACAGAACAAGCACAGCCCTA 59.235 50.000 0.00 0.00 0.00 3.53
201 202 0.820891 CACAGAACAAGCACAGCCCT 60.821 55.000 0.00 0.00 0.00 5.19
202 203 1.103398 ACACAGAACAAGCACAGCCC 61.103 55.000 0.00 0.00 0.00 5.19
203 204 1.264288 GTACACAGAACAAGCACAGCC 59.736 52.381 0.00 0.00 0.00 4.85
204 205 1.939934 TGTACACAGAACAAGCACAGC 59.060 47.619 0.00 0.00 0.00 4.40
205 206 3.198068 AGTGTACACAGAACAAGCACAG 58.802 45.455 27.06 0.00 0.00 3.66
206 207 3.260475 AGTGTACACAGAACAAGCACA 57.740 42.857 27.06 0.00 0.00 4.57
207 208 5.236478 ACAATAGTGTACACAGAACAAGCAC 59.764 40.000 27.06 0.00 35.72 4.40
208 209 5.364778 ACAATAGTGTACACAGAACAAGCA 58.635 37.500 27.06 1.94 35.72 3.91
209 210 5.924475 ACAATAGTGTACACAGAACAAGC 57.076 39.130 27.06 0.00 35.72 4.01
210 211 6.260050 ACCAACAATAGTGTACACAGAACAAG 59.740 38.462 27.06 11.86 36.80 3.16
211 212 6.037720 CACCAACAATAGTGTACACAGAACAA 59.962 38.462 27.06 6.26 36.80 2.83
212 213 5.525745 CACCAACAATAGTGTACACAGAACA 59.474 40.000 27.06 7.63 36.80 3.18
213 214 5.049680 CCACCAACAATAGTGTACACAGAAC 60.050 44.000 27.06 0.12 36.80 3.01
214 215 5.060506 CCACCAACAATAGTGTACACAGAA 58.939 41.667 27.06 12.81 36.80 3.02
215 216 4.637276 CCACCAACAATAGTGTACACAGA 58.363 43.478 27.06 15.16 36.80 3.41
216 217 3.188460 GCCACCAACAATAGTGTACACAG 59.812 47.826 27.06 15.65 36.80 3.66
217 218 3.142951 GCCACCAACAATAGTGTACACA 58.857 45.455 27.06 13.77 36.80 3.72
218 219 3.408634 AGCCACCAACAATAGTGTACAC 58.591 45.455 18.56 18.56 36.80 2.90
219 220 3.780804 AGCCACCAACAATAGTGTACA 57.219 42.857 0.00 0.00 36.80 2.90
220 221 5.935789 TCTAAAGCCACCAACAATAGTGTAC 59.064 40.000 0.00 0.00 36.80 2.90
221 222 6.116711 TCTAAAGCCACCAACAATAGTGTA 57.883 37.500 0.00 0.00 36.80 2.90
222 223 4.980573 TCTAAAGCCACCAACAATAGTGT 58.019 39.130 0.00 0.00 40.75 3.55
223 224 5.705441 TCTTCTAAAGCCACCAACAATAGTG 59.295 40.000 0.00 0.00 0.00 2.74
224 225 5.876357 TCTTCTAAAGCCACCAACAATAGT 58.124 37.500 0.00 0.00 0.00 2.12
225 226 6.817765 TTCTTCTAAAGCCACCAACAATAG 57.182 37.500 0.00 0.00 0.00 1.73
226 227 7.775053 AATTCTTCTAAAGCCACCAACAATA 57.225 32.000 0.00 0.00 0.00 1.90
227 228 6.670695 AATTCTTCTAAAGCCACCAACAAT 57.329 33.333 0.00 0.00 0.00 2.71
228 229 6.478512 AAATTCTTCTAAAGCCACCAACAA 57.521 33.333 0.00 0.00 0.00 2.83
229 230 6.775629 ACTAAATTCTTCTAAAGCCACCAACA 59.224 34.615 0.00 0.00 0.00 3.33
230 231 7.215719 ACTAAATTCTTCTAAAGCCACCAAC 57.784 36.000 0.00 0.00 0.00 3.77
231 232 7.308348 CGAACTAAATTCTTCTAAAGCCACCAA 60.308 37.037 0.00 0.00 34.88 3.67
232 233 6.148811 CGAACTAAATTCTTCTAAAGCCACCA 59.851 38.462 0.00 0.00 34.88 4.17
233 234 6.543736 CGAACTAAATTCTTCTAAAGCCACC 58.456 40.000 0.00 0.00 34.88 4.61
234 235 6.022208 GCGAACTAAATTCTTCTAAAGCCAC 58.978 40.000 0.00 0.00 34.88 5.01
235 236 5.938125 AGCGAACTAAATTCTTCTAAAGCCA 59.062 36.000 0.00 0.00 34.88 4.75
236 237 6.424176 AGCGAACTAAATTCTTCTAAAGCC 57.576 37.500 0.00 0.00 34.88 4.35
237 238 6.179193 CGAGCGAACTAAATTCTTCTAAAGC 58.821 40.000 0.00 0.00 34.88 3.51
238 239 7.279470 ACGAGCGAACTAAATTCTTCTAAAG 57.721 36.000 0.00 0.00 34.88 1.85
239 240 6.309737 GGACGAGCGAACTAAATTCTTCTAAA 59.690 38.462 0.00 0.00 34.88 1.85
240 241 5.803967 GGACGAGCGAACTAAATTCTTCTAA 59.196 40.000 0.00 0.00 34.88 2.10
241 242 5.125097 AGGACGAGCGAACTAAATTCTTCTA 59.875 40.000 0.00 0.00 34.88 2.10
242 243 4.082136 AGGACGAGCGAACTAAATTCTTCT 60.082 41.667 0.00 0.00 34.88 2.85
243 244 4.174762 AGGACGAGCGAACTAAATTCTTC 58.825 43.478 0.00 0.00 34.88 2.87
244 245 4.189639 AGGACGAGCGAACTAAATTCTT 57.810 40.909 0.00 0.00 34.88 2.52
245 246 3.870633 AGGACGAGCGAACTAAATTCT 57.129 42.857 0.00 0.00 34.88 2.40
246 247 5.747197 TGAATAGGACGAGCGAACTAAATTC 59.253 40.000 0.00 2.96 0.00 2.17
247 248 5.657474 TGAATAGGACGAGCGAACTAAATT 58.343 37.500 0.00 0.00 0.00 1.82
248 249 5.258456 TGAATAGGACGAGCGAACTAAAT 57.742 39.130 0.00 0.00 0.00 1.40
249 250 4.707030 TGAATAGGACGAGCGAACTAAA 57.293 40.909 0.00 0.00 0.00 1.85
250 251 4.707030 TTGAATAGGACGAGCGAACTAA 57.293 40.909 0.00 0.00 0.00 2.24
251 252 4.669318 CTTTGAATAGGACGAGCGAACTA 58.331 43.478 0.00 0.00 0.00 2.24
252 253 3.512680 CTTTGAATAGGACGAGCGAACT 58.487 45.455 0.00 0.00 0.00 3.01
253 254 2.029365 GCTTTGAATAGGACGAGCGAAC 59.971 50.000 0.00 0.00 0.00 3.95
254 255 2.094182 AGCTTTGAATAGGACGAGCGAA 60.094 45.455 0.00 0.00 0.00 4.70
257 258 1.936547 CCAGCTTTGAATAGGACGAGC 59.063 52.381 0.00 0.00 0.00 5.03
262 263 1.209504 CCGGTCCAGCTTTGAATAGGA 59.790 52.381 0.00 0.00 0.00 2.94
277 278 0.108329 CTGGTACCATGTCACCGGTC 60.108 60.000 16.75 0.00 37.66 4.79
280 281 0.391130 CACCTGGTACCATGTCACCG 60.391 60.000 18.84 5.55 37.66 4.94
386 391 9.755064 CCACATAAGTCGTGAAAAAGTAAATAG 57.245 33.333 0.00 0.00 36.43 1.73
388 393 7.081976 GCCACATAAGTCGTGAAAAAGTAAAT 58.918 34.615 0.00 0.00 36.43 1.40
401 406 9.009327 CAAGTAAAAATTATGCCACATAAGTCG 57.991 33.333 6.24 0.00 0.00 4.18
551 586 9.444600 ACTCGTAACCATTAAAAATATCACACT 57.555 29.630 0.00 0.00 0.00 3.55
591 626 9.631639 GCGCAATTTTGTAAATATTTCCATTAC 57.368 29.630 0.30 0.00 0.00 1.89
592 627 8.535592 CGCGCAATTTTGTAAATATTTCCATTA 58.464 29.630 8.75 0.00 0.00 1.90
594 629 6.754209 TCGCGCAATTTTGTAAATATTTCCAT 59.246 30.769 8.75 0.00 0.00 3.41
595 630 6.093404 TCGCGCAATTTTGTAAATATTTCCA 58.907 32.000 8.75 0.00 0.00 3.53
596 631 6.561945 TCGCGCAATTTTGTAAATATTTCC 57.438 33.333 8.75 0.00 0.00 3.13
597 632 7.418521 GTGTTCGCGCAATTTTGTAAATATTTC 59.581 33.333 8.75 0.00 0.00 2.17
598 633 7.096023 TGTGTTCGCGCAATTTTGTAAATATTT 60.096 29.630 8.75 5.89 34.27 1.40
599 634 6.363626 TGTGTTCGCGCAATTTTGTAAATATT 59.636 30.769 8.75 0.00 34.27 1.28
600 635 5.859114 TGTGTTCGCGCAATTTTGTAAATAT 59.141 32.000 8.75 0.00 34.27 1.28
601 636 5.212934 TGTGTTCGCGCAATTTTGTAAATA 58.787 33.333 8.75 0.00 34.27 1.40
602 637 4.045104 TGTGTTCGCGCAATTTTGTAAAT 58.955 34.783 8.75 0.00 34.27 1.40
603 638 3.435566 TGTGTTCGCGCAATTTTGTAAA 58.564 36.364 8.75 0.00 34.27 2.01
604 639 3.066369 TGTGTTCGCGCAATTTTGTAA 57.934 38.095 8.75 0.00 34.27 2.41
605 640 2.757686 TGTGTTCGCGCAATTTTGTA 57.242 40.000 8.75 0.00 34.27 2.41
606 641 2.132740 ATGTGTTCGCGCAATTTTGT 57.867 40.000 8.75 0.00 41.35 2.83
607 642 3.502256 AAATGTGTTCGCGCAATTTTG 57.498 38.095 8.75 0.00 41.35 2.44
608 643 4.504461 TGTAAAATGTGTTCGCGCAATTTT 59.496 33.333 8.75 11.00 40.14 1.82
609 644 4.045104 TGTAAAATGTGTTCGCGCAATTT 58.955 34.783 8.75 1.79 41.73 1.82
610 645 3.633235 TGTAAAATGTGTTCGCGCAATT 58.367 36.364 8.75 0.00 41.35 2.32
611 646 3.275400 TGTAAAATGTGTTCGCGCAAT 57.725 38.095 8.75 0.00 41.35 3.56
612 647 2.757686 TGTAAAATGTGTTCGCGCAA 57.242 40.000 8.75 0.00 41.35 4.85
613 648 2.723314 CGATGTAAAATGTGTTCGCGCA 60.723 45.455 8.75 0.00 42.31 6.09
614 649 1.831812 CGATGTAAAATGTGTTCGCGC 59.168 47.619 0.00 0.00 0.00 6.86
615 650 1.831812 GCGATGTAAAATGTGTTCGCG 59.168 47.619 0.00 0.00 41.84 5.87
617 652 2.832178 CGTGCGATGTAAAATGTGTTCG 59.168 45.455 0.00 0.00 0.00 3.95
618 653 4.060288 TCGTGCGATGTAAAATGTGTTC 57.940 40.909 0.00 0.00 0.00 3.18
619 654 4.475763 TTCGTGCGATGTAAAATGTGTT 57.524 36.364 0.00 0.00 0.00 3.32
620 655 4.678509 ATTCGTGCGATGTAAAATGTGT 57.321 36.364 0.00 0.00 0.00 3.72
621 656 7.663630 AAATATTCGTGCGATGTAAAATGTG 57.336 32.000 0.00 0.00 0.00 3.21
622 657 9.944663 ATAAAATATTCGTGCGATGTAAAATGT 57.055 25.926 0.00 0.00 0.00 2.71
730 774 7.704899 GCTACTTAACAAAAGTCCATGTGTTTT 59.295 33.333 2.87 0.00 35.82 2.43
733 777 5.825679 TGCTACTTAACAAAAGTCCATGTGT 59.174 36.000 0.00 0.00 0.00 3.72
736 780 5.178623 TCGTGCTACTTAACAAAAGTCCATG 59.821 40.000 0.00 0.00 0.00 3.66
740 784 6.520792 TCTTCGTGCTACTTAACAAAAGTC 57.479 37.500 0.00 0.00 0.00 3.01
742 786 8.782533 AAATTCTTCGTGCTACTTAACAAAAG 57.217 30.769 0.00 0.00 0.00 2.27
743 787 9.575783 AAAAATTCTTCGTGCTACTTAACAAAA 57.424 25.926 0.00 0.00 0.00 2.44
747 791 8.776680 TTCAAAAATTCTTCGTGCTACTTAAC 57.223 30.769 0.00 0.00 0.00 2.01
754 798 6.359617 CGTGTATTTCAAAAATTCTTCGTGCT 59.640 34.615 0.00 0.00 0.00 4.40
757 801 8.013378 CCTACGTGTATTTCAAAAATTCTTCGT 58.987 33.333 0.00 0.00 0.00 3.85
762 806 8.460831 AATGCCTACGTGTATTTCAAAAATTC 57.539 30.769 0.00 0.00 0.00 2.17
765 809 9.745880 TTAAAATGCCTACGTGTATTTCAAAAA 57.254 25.926 0.00 0.00 0.00 1.94
769 813 9.915629 AAAATTAAAATGCCTACGTGTATTTCA 57.084 25.926 0.00 0.00 0.00 2.69
833 877 6.936279 TCTCGAAACCAGAGTATTTTCATCT 58.064 36.000 0.00 0.00 37.07 2.90
836 880 5.351465 GCATCTCGAAACCAGAGTATTTTCA 59.649 40.000 0.00 0.00 37.07 2.69
837 881 5.351465 TGCATCTCGAAACCAGAGTATTTTC 59.649 40.000 0.00 0.00 37.07 2.29
838 882 5.245531 TGCATCTCGAAACCAGAGTATTTT 58.754 37.500 0.00 0.00 37.07 1.82
839 883 4.832248 TGCATCTCGAAACCAGAGTATTT 58.168 39.130 0.00 0.00 37.07 1.40
840 884 4.081420 ACTGCATCTCGAAACCAGAGTATT 60.081 41.667 8.46 0.00 37.07 1.89
841 885 3.449018 ACTGCATCTCGAAACCAGAGTAT 59.551 43.478 8.46 0.00 37.07 2.12
842 886 2.826128 ACTGCATCTCGAAACCAGAGTA 59.174 45.455 8.46 0.00 37.07 2.59
844 888 2.266554 GACTGCATCTCGAAACCAGAG 58.733 52.381 8.46 0.00 37.09 3.35
845 889 1.402852 CGACTGCATCTCGAAACCAGA 60.403 52.381 7.95 0.00 32.65 3.86
846 890 0.994995 CGACTGCATCTCGAAACCAG 59.005 55.000 7.95 0.00 32.65 4.00
847 891 0.389817 CCGACTGCATCTCGAAACCA 60.390 55.000 13.96 0.00 32.65 3.67
848 892 0.108804 TCCGACTGCATCTCGAAACC 60.109 55.000 13.96 0.00 32.65 3.27
849 893 0.992802 GTCCGACTGCATCTCGAAAC 59.007 55.000 13.96 8.77 32.65 2.78
850 894 0.456142 CGTCCGACTGCATCTCGAAA 60.456 55.000 13.96 1.47 32.65 3.46
851 895 1.136774 CGTCCGACTGCATCTCGAA 59.863 57.895 13.96 0.00 32.65 3.71
852 896 1.743995 TCGTCCGACTGCATCTCGA 60.744 57.895 13.96 8.70 32.65 4.04
853 897 1.583967 GTCGTCCGACTGCATCTCG 60.584 63.158 12.31 6.90 41.57 4.04
854 898 0.798771 GTGTCGTCCGACTGCATCTC 60.799 60.000 19.30 0.00 44.80 2.75
856 900 0.666274 TTGTGTCGTCCGACTGCATC 60.666 55.000 19.30 6.89 44.80 3.91
858 902 1.590525 GTTGTGTCGTCCGACTGCA 60.591 57.895 19.30 14.95 44.80 4.41
899 985 2.028876 GGGTTGGTTGTTGCTACTTGT 58.971 47.619 0.00 0.00 0.00 3.16
900 986 2.034558 CAGGGTTGGTTGTTGCTACTTG 59.965 50.000 0.00 0.00 0.00 3.16
901 987 2.306847 CAGGGTTGGTTGTTGCTACTT 58.693 47.619 0.00 0.00 0.00 2.24
904 990 0.825840 GCCAGGGTTGGTTGTTGCTA 60.826 55.000 0.00 0.00 46.80 3.49
905 991 2.133641 GCCAGGGTTGGTTGTTGCT 61.134 57.895 0.00 0.00 46.80 3.91
907 993 1.457455 AGGCCAGGGTTGGTTGTTG 60.457 57.895 5.01 0.00 46.80 3.33
908 994 1.457455 CAGGCCAGGGTTGGTTGTT 60.457 57.895 5.01 0.00 46.80 2.83
910 996 1.457455 AACAGGCCAGGGTTGGTTG 60.457 57.895 5.01 0.00 46.80 3.77
911 997 1.152546 GAACAGGCCAGGGTTGGTT 60.153 57.895 5.01 0.00 46.80 3.67
912 998 2.069165 GAGAACAGGCCAGGGTTGGT 62.069 60.000 5.01 0.00 46.80 3.67
914 1000 1.672356 CGAGAACAGGCCAGGGTTG 60.672 63.158 5.01 0.00 0.00 3.77
916 1002 2.526873 ACGAGAACAGGCCAGGGT 60.527 61.111 5.01 0.00 0.00 4.34
919 1005 0.824109 TATGGACGAGAACAGGCCAG 59.176 55.000 5.01 0.00 31.23 4.85
921 1007 1.941325 CTTATGGACGAGAACAGGCC 58.059 55.000 0.00 0.00 0.00 5.19
965 1069 4.196971 GGTGGTGGTGAGATTGTTATACC 58.803 47.826 0.00 0.00 0.00 2.73
971 1075 0.843309 TGTGGTGGTGGTGAGATTGT 59.157 50.000 0.00 0.00 0.00 2.71
982 1178 1.541147 CATCGCAATTCTTGTGGTGGT 59.459 47.619 5.91 0.00 45.93 4.16
985 1181 0.527565 GCCATCGCAATTCTTGTGGT 59.472 50.000 1.04 0.00 41.37 4.16
1034 1236 2.840753 TTCACCAGACAAGGCCCCC 61.841 63.158 0.00 0.00 0.00 5.40
1035 1237 1.603739 GTTCACCAGACAAGGCCCC 60.604 63.158 0.00 0.00 0.00 5.80
1036 1238 1.603739 GGTTCACCAGACAAGGCCC 60.604 63.158 0.00 0.00 35.64 5.80
1037 1239 1.603739 GGGTTCACCAGACAAGGCC 60.604 63.158 0.00 0.00 39.85 5.19
1038 1240 0.606673 GAGGGTTCACCAGACAAGGC 60.607 60.000 0.00 0.00 43.89 4.35
1039 1241 0.036875 GGAGGGTTCACCAGACAAGG 59.963 60.000 0.00 0.00 43.89 3.61
1040 1242 0.320771 CGGAGGGTTCACCAGACAAG 60.321 60.000 0.00 0.00 43.89 3.16
1041 1243 1.752198 CGGAGGGTTCACCAGACAA 59.248 57.895 0.00 0.00 43.89 3.18
1042 1244 2.879233 GCGGAGGGTTCACCAGACA 61.879 63.158 0.00 0.00 43.89 3.41
1043 1245 2.047179 GCGGAGGGTTCACCAGAC 60.047 66.667 0.00 0.00 43.89 3.51
1044 1246 3.319198 GGCGGAGGGTTCACCAGA 61.319 66.667 0.00 0.00 43.89 3.86
1045 1247 4.760047 CGGCGGAGGGTTCACCAG 62.760 72.222 0.00 0.00 43.89 4.00
1052 1254 0.958876 GATTTTGAACGGCGGAGGGT 60.959 55.000 13.24 0.00 0.00 4.34
1085 1287 0.600057 AACTGAACTCGTACCCGGAC 59.400 55.000 0.73 0.00 33.95 4.79
1121 1350 1.609239 CTGGTAGCCATGGCCTCAA 59.391 57.895 33.14 18.23 43.17 3.02
1135 1364 2.990479 GATCTTGCCGTCCCTGGT 59.010 61.111 0.00 0.00 0.00 4.00
1254 1513 1.056660 TGTCCTTGTGAACCTCCTCC 58.943 55.000 0.00 0.00 0.00 4.30
1261 1520 3.058914 CCGTTCATCTTGTCCTTGTGAAC 60.059 47.826 6.50 6.50 43.04 3.18
1320 1579 0.186386 CTAGGTCCATCTCCTCCGGT 59.814 60.000 0.00 0.00 36.60 5.28
1340 1613 0.036388 GATGACGGGGCTTGTTCTGA 60.036 55.000 0.00 0.00 0.00 3.27
1343 1616 0.744771 GGAGATGACGGGGCTTGTTC 60.745 60.000 0.00 0.00 0.00 3.18
1351 1624 0.752009 TCCTTCTCGGAGATGACGGG 60.752 60.000 19.28 11.81 36.69 5.28
1366 1645 1.454847 AGAGCCGCTCGATCTCCTT 60.455 57.895 14.71 0.00 35.36 3.36
1443 1722 0.954449 TCTCTTTGCTGCTGCTGAGC 60.954 55.000 17.00 7.86 46.44 4.26
1457 1736 7.310361 CCTTGTCCTTATCTTCTTCAGTCTCTT 60.310 40.741 0.00 0.00 0.00 2.85
1458 1737 6.154363 CCTTGTCCTTATCTTCTTCAGTCTCT 59.846 42.308 0.00 0.00 0.00 3.10
1459 1738 6.337356 CCTTGTCCTTATCTTCTTCAGTCTC 58.663 44.000 0.00 0.00 0.00 3.36
1460 1739 5.337975 GCCTTGTCCTTATCTTCTTCAGTCT 60.338 44.000 0.00 0.00 0.00 3.24
1461 1740 4.873259 GCCTTGTCCTTATCTTCTTCAGTC 59.127 45.833 0.00 0.00 0.00 3.51
1463 1742 3.868077 CGCCTTGTCCTTATCTTCTTCAG 59.132 47.826 0.00 0.00 0.00 3.02
1464 1743 3.513912 TCGCCTTGTCCTTATCTTCTTCA 59.486 43.478 0.00 0.00 0.00 3.02
1465 1744 4.124851 TCGCCTTGTCCTTATCTTCTTC 57.875 45.455 0.00 0.00 0.00 2.87
1466 1745 4.508662 CTTCGCCTTGTCCTTATCTTCTT 58.491 43.478 0.00 0.00 0.00 2.52
1468 1747 2.609916 GCTTCGCCTTGTCCTTATCTTC 59.390 50.000 0.00 0.00 0.00 2.87
1771 2289 9.113838 CATGAATTAGTACTTGCTACAAGGATT 57.886 33.333 0.00 2.81 0.00 3.01
1772 2290 7.716998 CCATGAATTAGTACTTGCTACAAGGAT 59.283 37.037 0.00 0.50 0.00 3.24
1832 5273 4.266502 GCACGCACAATTTTGTTGTTAAGA 59.733 37.500 0.00 0.00 39.91 2.10
1833 5274 4.032217 TGCACGCACAATTTTGTTGTTAAG 59.968 37.500 0.00 0.00 39.91 1.85
1834 5275 3.926527 TGCACGCACAATTTTGTTGTTAA 59.073 34.783 0.00 0.00 39.91 2.01
1835 5276 3.511699 TGCACGCACAATTTTGTTGTTA 58.488 36.364 0.00 0.00 39.91 2.41
1836 5277 2.341257 TGCACGCACAATTTTGTTGTT 58.659 38.095 0.00 0.00 39.91 2.83
1837 5278 1.925847 CTGCACGCACAATTTTGTTGT 59.074 42.857 0.00 0.00 39.91 3.32
2021 5462 3.282745 ATTGTCTCGTGCGGCGACT 62.283 57.895 12.98 0.00 45.68 4.18
2042 5483 2.227968 GAACGTTGCGCTTGCGATCT 62.228 55.000 19.55 8.47 43.34 2.75
2168 5617 5.631026 CAAACCGATGGATCAACAAACTAG 58.369 41.667 0.00 0.00 0.00 2.57
2192 5642 3.978855 CACACACACTGAATGAATTGCAG 59.021 43.478 0.00 0.00 35.81 4.41
2214 5668 3.285215 CCTGCAGGCGCCATCATC 61.285 66.667 31.54 12.64 37.32 2.92
2360 5814 2.769663 TCTGATAACCACCGTAATGGCT 59.230 45.455 0.00 0.00 44.33 4.75
2380 5834 7.441458 GTGACAGTATAGAAACCATTATGGGTC 59.559 40.741 16.35 11.99 35.52 4.46
2810 6305 8.391106 GTTGAGGTCACATTTATGCTTACTTAG 58.609 37.037 0.00 0.00 0.00 2.18
2913 6408 1.145738 AGCACCATCCAACATATCCCC 59.854 52.381 0.00 0.00 0.00 4.81
2924 6421 4.823442 TGATCAAATACATGAGCACCATCC 59.177 41.667 0.00 0.00 40.52 3.51
3014 6999 4.518249 AGACTTGGCCTATAAAACAGAGC 58.482 43.478 3.32 0.00 0.00 4.09
3050 7037 9.309516 TGCAAGTTATAGCAGTAATGTAAGTAC 57.690 33.333 0.00 0.00 37.73 2.73
3086 7076 3.056107 CGGTCAGACCAGAAATACTTCCA 60.056 47.826 20.13 0.00 38.47 3.53
3216 7219 4.065789 CTCAAGTTCCTAGGAAACCACAC 58.934 47.826 25.89 13.09 35.75 3.82
3225 7228 0.460987 CCGCAGCTCAAGTTCCTAGG 60.461 60.000 0.82 0.82 0.00 3.02
3243 7246 2.997485 AGAAAACTCAGCATTTCGCC 57.003 45.000 0.00 0.00 44.04 5.54
3254 7257 9.741168 GTTTTAAGCAAGACAAAAAGAAAACTC 57.259 29.630 0.00 0.00 33.56 3.01
3287 7291 2.925724 TGTCACCGGTGAAAATTGAGT 58.074 42.857 37.75 0.00 41.85 3.41
3356 7387 7.011389 TCACAAGTTAAACAAGAGTGATCAGTG 59.989 37.037 8.05 1.10 30.43 3.66
3365 7396 7.645340 CCAAGTTGATCACAAGTTAAACAAGAG 59.355 37.037 3.87 0.00 44.63 2.85
3397 7428 1.277326 TAACGTTCTGCAGCATAGCG 58.723 50.000 14.25 14.25 37.31 4.26
3425 7456 8.553459 GTAGCATACCATACTTCATAGCATTT 57.447 34.615 0.00 0.00 34.89 2.32
3447 7478 3.458487 AGGTATAACTGGGCAAAGGGTAG 59.542 47.826 0.00 0.00 0.00 3.18
3467 7504 6.301169 ACTGGGAAAACAGAAGTAGATAGG 57.699 41.667 0.00 0.00 40.97 2.57
3485 7525 0.395312 ACGAACAACCACCTACTGGG 59.605 55.000 0.00 0.00 45.78 4.45
3516 7557 2.017049 ACAGACACACAAAGCTTGGTC 58.983 47.619 2.59 5.54 34.12 4.02
3517 7558 2.017049 GACAGACACACAAAGCTTGGT 58.983 47.619 0.00 0.00 34.12 3.67
3690 7754 9.547753 AACTGAATGACATATACCATGTAAGTC 57.452 33.333 0.00 0.00 30.38 3.01
3738 7804 3.608796 GCTTCTTCCTCTCATTCAGCTT 58.391 45.455 0.00 0.00 0.00 3.74
3778 7844 5.129485 ACTGATGATAGAAACGGTCTTGGAT 59.871 40.000 0.00 0.00 37.84 3.41
3782 7848 6.535508 GCTAAACTGATGATAGAAACGGTCTT 59.464 38.462 0.00 0.00 37.84 3.01
3815 7881 2.100087 AGAAAACCGGCGTGAAAAACAT 59.900 40.909 6.01 0.00 0.00 2.71
3817 7883 2.197792 AGAAAACCGGCGTGAAAAAC 57.802 45.000 6.01 0.00 0.00 2.43
3821 7887 1.064357 GTTCAAGAAAACCGGCGTGAA 59.936 47.619 6.01 4.33 31.75 3.18
3822 7888 0.658897 GTTCAAGAAAACCGGCGTGA 59.341 50.000 6.01 0.00 0.00 4.35
3824 7890 1.314730 ATGTTCAAGAAAACCGGCGT 58.685 45.000 6.01 0.00 0.00 5.68
3826 7892 3.712187 TGAAATGTTCAAGAAAACCGGC 58.288 40.909 0.00 0.00 36.59 6.13
3827 7893 5.527951 TCATGAAATGTTCAAGAAAACCGG 58.472 37.500 0.00 0.00 46.80 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.