Multiple sequence alignment - TraesCS2A01G576800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G576800 chr2A 100.000 4246 0 0 1 4246 771075976 771071731 0.000000e+00 7841.0
1 TraesCS2A01G576800 chr2A 90.972 1728 80 32 1966 3661 771126634 771124951 0.000000e+00 2257.0
2 TraesCS2A01G576800 chr2A 91.422 1632 97 22 2065 3661 771345711 771347334 0.000000e+00 2198.0
3 TraesCS2A01G576800 chr2A 82.588 1028 140 21 2163 3173 771501413 771500408 0.000000e+00 870.0
4 TraesCS2A01G576800 chr2A 85.538 650 70 11 2 633 771344658 771345301 0.000000e+00 658.0
5 TraesCS2A01G576800 chr2A 82.822 652 61 24 3525 4136 771125086 771124446 1.740000e-148 536.0
6 TraesCS2A01G576800 chr2A 87.783 442 41 10 1404 1836 771127069 771126632 4.900000e-139 505.0
7 TraesCS2A01G576800 chr2A 75.302 579 89 32 289 837 771128112 771127558 1.190000e-55 228.0
8 TraesCS2A01G576800 chr2A 87.931 174 19 2 1029 1201 771502297 771502125 2.000000e-48 204.0
9 TraesCS2A01G576800 chr2A 87.097 186 8 5 1731 1912 771345534 771345707 3.350000e-46 196.0
10 TraesCS2A01G576800 chr2A 81.557 244 24 7 1052 1280 771127430 771127193 9.380000e-42 182.0
11 TraesCS2A01G576800 chr2A 88.350 103 5 4 1862 1960 771126634 771126535 2.680000e-22 117.0
12 TraesCS2A01G576800 chr2A 87.619 105 8 2 3662 3761 771347363 771347467 2.680000e-22 117.0
13 TraesCS2A01G576800 chr2A 79.021 143 21 9 3815 3950 771347485 771347625 5.850000e-14 89.8
14 TraesCS2A01G576800 chr2B 90.669 2347 109 43 1958 4246 790104971 790107265 0.000000e+00 3020.0
15 TraesCS2A01G576800 chr2B 82.295 1124 160 23 2065 3171 789791022 789792123 0.000000e+00 937.0
16 TraesCS2A01G576800 chr2B 79.283 1144 163 43 1999 3114 790229048 790227951 0.000000e+00 732.0
17 TraesCS2A01G576800 chr2B 82.394 869 77 38 1029 1856 790104092 790104925 0.000000e+00 688.0
18 TraesCS2A01G576800 chr2B 90.283 247 24 0 2910 3156 788993278 788993524 1.470000e-84 324.0
19 TraesCS2A01G576800 chr2B 82.078 385 39 12 1029 1410 790229982 790229625 6.900000e-78 302.0
20 TraesCS2A01G576800 chr2B 84.615 247 30 4 1035 1277 789790110 789790352 5.490000e-59 239.0
21 TraesCS2A01G576800 chr2B 89.815 108 7 4 1853 1959 790104969 790105073 7.410000e-28 135.0
22 TraesCS2A01G576800 chr2D 92.636 1779 80 21 1910 3659 645613055 645611299 0.000000e+00 2512.0
23 TraesCS2A01G576800 chr2D 81.088 1195 164 35 2001 3171 645816225 645815069 0.000000e+00 898.0
24 TraesCS2A01G576800 chr2D 81.244 1125 167 26 2067 3171 645791914 645793014 0.000000e+00 869.0
25 TraesCS2A01G576800 chr2D 79.181 1148 163 46 1993 3111 645723555 645724655 0.000000e+00 726.0
26 TraesCS2A01G576800 chr2D 89.412 595 35 13 1430 2005 645613772 645613187 0.000000e+00 725.0
27 TraesCS2A01G576800 chr2D 91.034 435 34 5 3815 4246 645611146 645610714 2.200000e-162 582.0
28 TraesCS2A01G576800 chr2D 79.449 798 127 23 2001 2789 645560222 645559453 8.080000e-147 531.0
29 TraesCS2A01G576800 chr2D 78.286 700 66 42 1041 1687 645788439 645789105 5.180000e-99 372.0
30 TraesCS2A01G576800 chr2D 89.189 148 15 1 1151 1297 645561033 645560886 2.610000e-42 183.0
31 TraesCS2A01G576800 chr2D 85.475 179 23 1 1029 1204 645722675 645722853 2.610000e-42 183.0
32 TraesCS2A01G576800 chr2D 81.106 217 31 8 3166 3378 645724777 645724987 9.440000e-37 165.0
33 TraesCS2A01G576800 chr2D 83.516 182 21 3 1029 1201 645817124 645816943 1.220000e-35 161.0
34 TraesCS2A01G576800 chr2D 91.667 108 3 2 1856 1960 645613005 645612901 1.230000e-30 145.0
35 TraesCS2A01G576800 chr2D 83.333 126 15 2 1040 1159 645614339 645614214 1.250000e-20 111.0
36 TraesCS2A01G576800 chr2D 96.491 57 2 0 1224 1280 645816944 645816888 1.260000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G576800 chr2A 771071731 771075976 4245 True 7841.000000 7841 100.000000 1 4246 1 chr2A.!!$R1 4245
1 TraesCS2A01G576800 chr2A 771344658 771347625 2967 False 651.760000 2198 86.139400 2 3950 5 chr2A.!!$F1 3948
2 TraesCS2A01G576800 chr2A 771124446 771128112 3666 True 637.500000 2257 84.464333 289 4136 6 chr2A.!!$R2 3847
3 TraesCS2A01G576800 chr2A 771500408 771502297 1889 True 537.000000 870 85.259500 1029 3173 2 chr2A.!!$R3 2144
4 TraesCS2A01G576800 chr2B 790104092 790107265 3173 False 1281.000000 3020 87.626000 1029 4246 3 chr2B.!!$F3 3217
5 TraesCS2A01G576800 chr2B 789790110 789792123 2013 False 588.000000 937 83.455000 1035 3171 2 chr2B.!!$F2 2136
6 TraesCS2A01G576800 chr2B 790227951 790229982 2031 True 517.000000 732 80.680500 1029 3114 2 chr2B.!!$R1 2085
7 TraesCS2A01G576800 chr2D 645610714 645614339 3625 True 815.000000 2512 89.616400 1040 4246 5 chr2D.!!$R2 3206
8 TraesCS2A01G576800 chr2D 645788439 645793014 4575 False 620.500000 869 79.765000 1041 3171 2 chr2D.!!$F2 2130
9 TraesCS2A01G576800 chr2D 645815069 645817124 2055 True 384.766667 898 87.031667 1029 3171 3 chr2D.!!$R3 2142
10 TraesCS2A01G576800 chr2D 645722675 645724987 2312 False 358.000000 726 81.920667 1029 3378 3 chr2D.!!$F1 2349
11 TraesCS2A01G576800 chr2D 645559453 645561033 1580 True 357.000000 531 84.319000 1151 2789 2 chr2D.!!$R1 1638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 1010 0.179029 AACAACGTAGCTGGGCTGTT 60.179 50.0 0.0 0.0 40.10 3.16 F
1012 1074 0.039617 CATAAGAGCGGAGAGAGGCG 60.040 60.0 0.0 0.0 0.00 5.52 F
2140 5522 0.105401 TACACACCCAGACAGGTCCA 60.105 55.0 0.0 0.0 38.39 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2459 5850 0.555769 ACAGAAAGGGGTCCTGCAAA 59.444 50.000 0.00 0.0 32.13 3.68 R
3004 6446 1.749063 CCATGACATGAGCTTGCACAT 59.251 47.619 17.24 0.0 0.00 3.21 R
4033 7677 1.658994 ACGTTCAAGAAAACCGAGCA 58.341 45.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.153086 GGCATCTTCATGGAGGCGT 60.153 57.895 0.00 0.00 42.91 5.68
26 27 0.749454 GGCATCTTCATGGAGGCGTT 60.749 55.000 0.00 0.00 42.91 4.84
67 69 3.773860 CACACACTGTGCCAACTAAAA 57.226 42.857 9.20 0.00 41.89 1.52
91 93 2.636830 CACCTAAAGTGGAGCATGAGG 58.363 52.381 0.00 0.00 43.26 3.86
96 98 1.919600 AAGTGGAGCATGAGGCCTCC 61.920 60.000 29.95 14.90 46.50 4.30
98 100 3.092511 GGAGCATGAGGCCTCCCA 61.093 66.667 29.95 13.86 46.50 4.37
111 113 3.649277 CTCCCACCGGCAAGAGTCG 62.649 68.421 0.00 0.00 43.89 4.18
127 129 2.024871 CGAGATCCACGACGCCTC 59.975 66.667 0.00 0.00 0.00 4.70
128 130 2.024871 GAGATCCACGACGCCTCG 59.975 66.667 3.44 3.44 46.06 4.63
166 168 4.648762 ACAGAAGATGAGATAGACCAGTGG 59.351 45.833 7.91 7.91 0.00 4.00
169 171 3.378512 AGATGAGATAGACCAGTGGCAA 58.621 45.455 9.78 0.00 0.00 4.52
172 174 2.840038 TGAGATAGACCAGTGGCAATGT 59.160 45.455 14.40 1.93 0.00 2.71
173 175 3.118629 TGAGATAGACCAGTGGCAATGTC 60.119 47.826 14.40 11.10 0.00 3.06
176 178 0.320771 AGACCAGTGGCAATGTCGAC 60.321 55.000 14.40 9.11 33.04 4.20
178 180 2.390599 CCAGTGGCAATGTCGACGG 61.391 63.158 14.40 4.16 0.00 4.79
183 185 2.750888 GGCAATGTCGACGGAAGGC 61.751 63.158 11.62 9.28 0.00 4.35
185 187 1.298859 GCAATGTCGACGGAAGGCTT 61.299 55.000 11.62 0.00 36.51 4.35
187 189 0.320374 AATGTCGACGGAAGGCTTGA 59.680 50.000 11.62 0.00 36.51 3.02
209 211 1.299541 CCTTAATCGCATGTTCGCCT 58.700 50.000 0.00 0.00 0.00 5.52
210 212 1.003545 CCTTAATCGCATGTTCGCCTG 60.004 52.381 0.00 0.00 0.00 4.85
211 213 1.003545 CTTAATCGCATGTTCGCCTGG 60.004 52.381 0.00 0.00 0.00 4.45
225 227 2.578178 CTGGCGAGCGAGACGAAG 60.578 66.667 0.63 0.00 0.00 3.79
229 231 3.441290 CGAGCGAGACGAAGGGGT 61.441 66.667 0.00 0.00 0.00 4.95
231 233 1.728672 GAGCGAGACGAAGGGGTAG 59.271 63.158 0.00 0.00 0.00 3.18
236 238 2.040114 GACGAAGGGGTAGGGGGT 59.960 66.667 0.00 0.00 0.00 4.95
247 249 2.474112 GGTAGGGGGTGTTGTATCTCA 58.526 52.381 0.00 0.00 0.00 3.27
248 250 3.046374 GGTAGGGGGTGTTGTATCTCAT 58.954 50.000 0.00 0.00 0.00 2.90
252 254 4.600062 AGGGGGTGTTGTATCTCATTTTC 58.400 43.478 0.00 0.00 0.00 2.29
261 263 7.175990 GTGTTGTATCTCATTTTCCAACCCTTA 59.824 37.037 0.00 0.00 33.12 2.69
266 268 6.834168 TCTCATTTTCCAACCCTTACATTC 57.166 37.500 0.00 0.00 0.00 2.67
272 274 6.844097 TTTCCAACCCTTACATTCCAATAC 57.156 37.500 0.00 0.00 0.00 1.89
312 314 2.672195 GCCCTATTCAAAGCTGCACAAC 60.672 50.000 1.02 0.00 0.00 3.32
325 327 4.500265 ACAACTGGTGACATGGCC 57.500 55.556 0.00 0.00 41.51 5.36
329 331 1.803453 AACTGGTGACATGGCCCCAT 61.803 55.000 2.07 0.00 41.51 4.00
337 339 2.204748 CATGGCCCCATGTGGAAAG 58.795 57.895 17.23 0.00 46.20 2.62
339 341 0.413037 ATGGCCCCATGTGGAAAGAA 59.587 50.000 0.00 0.00 37.39 2.52
340 342 0.251742 TGGCCCCATGTGGAAAGAAG 60.252 55.000 0.00 0.00 37.39 2.85
632 653 9.719279 TTTTAATGGTTACGAGTACTTTTTGTG 57.281 29.630 0.00 0.00 0.00 3.33
635 656 6.826893 TGGTTACGAGTACTTTTTGTGTAC 57.173 37.500 0.00 0.00 40.19 2.90
636 657 6.336566 TGGTTACGAGTACTTTTTGTGTACA 58.663 36.000 0.00 0.00 41.76 2.90
637 658 6.815641 TGGTTACGAGTACTTTTTGTGTACAA 59.184 34.615 0.00 0.00 41.76 2.41
639 660 8.337532 GGTTACGAGTACTTTTTGTGTACAAAT 58.662 33.333 10.63 0.08 44.30 2.32
640 661 9.150653 GTTACGAGTACTTTTTGTGTACAAATG 57.849 33.333 10.63 9.36 44.30 2.32
652 703 8.479313 TTTGTGTACAAATGTTTACATTGCAA 57.521 26.923 0.00 0.00 45.06 4.08
793 844 6.663480 TTTTAAGTTGCGCGAATAACTTTC 57.337 33.333 28.49 5.05 42.67 2.62
809 860 3.256558 ACTTTCGAAATACACGTAGGCC 58.743 45.455 11.70 0.00 0.00 5.19
810 861 3.255725 CTTTCGAAATACACGTAGGCCA 58.744 45.455 11.70 0.00 0.00 5.36
814 865 4.255301 TCGAAATACACGTAGGCCATTTT 58.745 39.130 5.01 0.00 0.00 1.82
852 913 9.893305 TTTTTCTAAAAATAGCGAAAAGGAGAG 57.107 29.630 0.00 0.00 36.89 3.20
853 914 6.663944 TCTAAAAATAGCGAAAAGGAGAGC 57.336 37.500 0.00 0.00 0.00 4.09
854 915 6.407202 TCTAAAAATAGCGAAAAGGAGAGCT 58.593 36.000 0.00 0.00 43.07 4.09
855 916 4.954092 AAAATAGCGAAAAGGAGAGCTG 57.046 40.909 0.00 0.00 40.51 4.24
856 917 3.895232 AATAGCGAAAAGGAGAGCTGA 57.105 42.857 0.00 0.00 40.51 4.26
858 919 2.550830 AGCGAAAAGGAGAGCTGAAA 57.449 45.000 0.00 0.00 38.67 2.69
859 920 2.851195 AGCGAAAAGGAGAGCTGAAAA 58.149 42.857 0.00 0.00 38.67 2.29
860 921 3.214328 AGCGAAAAGGAGAGCTGAAAAA 58.786 40.909 0.00 0.00 38.67 1.94
885 946 8.500753 AAATAACAAAAAGGAAGAAAACACCC 57.499 30.769 0.00 0.00 0.00 4.61
886 947 4.481368 ACAAAAAGGAAGAAAACACCCC 57.519 40.909 0.00 0.00 0.00 4.95
887 948 3.199071 ACAAAAAGGAAGAAAACACCCCC 59.801 43.478 0.00 0.00 0.00 5.40
888 949 2.858787 AAAGGAAGAAAACACCCCCA 57.141 45.000 0.00 0.00 0.00 4.96
889 950 2.858787 AAGGAAGAAAACACCCCCAA 57.141 45.000 0.00 0.00 0.00 4.12
890 951 2.858787 AGGAAGAAAACACCCCCAAA 57.141 45.000 0.00 0.00 0.00 3.28
891 952 3.123392 AGGAAGAAAACACCCCCAAAA 57.877 42.857 0.00 0.00 0.00 2.44
892 953 3.455849 AGGAAGAAAACACCCCCAAAAA 58.544 40.909 0.00 0.00 0.00 1.94
893 954 4.044308 AGGAAGAAAACACCCCCAAAAAT 58.956 39.130 0.00 0.00 0.00 1.82
894 955 4.476846 AGGAAGAAAACACCCCCAAAAATT 59.523 37.500 0.00 0.00 0.00 1.82
895 956 5.668080 AGGAAGAAAACACCCCCAAAAATTA 59.332 36.000 0.00 0.00 0.00 1.40
896 957 6.331572 AGGAAGAAAACACCCCCAAAAATTAT 59.668 34.615 0.00 0.00 0.00 1.28
897 958 6.429692 GGAAGAAAACACCCCCAAAAATTATG 59.570 38.462 0.00 0.00 0.00 1.90
898 959 5.312895 AGAAAACACCCCCAAAAATTATGC 58.687 37.500 0.00 0.00 0.00 3.14
899 960 3.326836 AACACCCCCAAAAATTATGCG 57.673 42.857 0.00 0.00 0.00 4.73
900 961 1.066502 ACACCCCCAAAAATTATGCGC 60.067 47.619 0.00 0.00 0.00 6.09
901 962 0.539518 ACCCCCAAAAATTATGCGCC 59.460 50.000 4.18 0.00 0.00 6.53
902 963 0.539051 CCCCCAAAAATTATGCGCCA 59.461 50.000 4.18 0.00 0.00 5.69
903 964 1.065854 CCCCCAAAAATTATGCGCCAA 60.066 47.619 4.18 0.00 0.00 4.52
904 965 2.278854 CCCCAAAAATTATGCGCCAAG 58.721 47.619 4.18 0.00 0.00 3.61
925 986 1.153997 GTTCGAGAGCAGTCGGACC 60.154 63.158 4.14 0.00 41.83 4.46
928 989 2.179517 GAGAGCAGTCGGACCACG 59.820 66.667 4.14 0.00 46.11 4.94
948 1010 0.179029 AACAACGTAGCTGGGCTGTT 60.179 50.000 0.00 0.00 40.10 3.16
949 1011 0.884704 ACAACGTAGCTGGGCTGTTG 60.885 55.000 16.00 16.00 43.48 3.33
954 1016 0.674895 GTAGCTGGGCTGTTGGACTG 60.675 60.000 0.00 0.00 40.10 3.51
955 1017 1.127567 TAGCTGGGCTGTTGGACTGT 61.128 55.000 0.00 0.00 40.10 3.55
956 1018 2.263741 GCTGGGCTGTTGGACTGTG 61.264 63.158 0.00 0.00 0.00 3.66
959 1021 1.302832 GGGCTGTTGGACTGTGAGG 60.303 63.158 0.00 0.00 0.00 3.86
960 1022 1.968540 GGCTGTTGGACTGTGAGGC 60.969 63.158 0.00 0.00 0.00 4.70
962 1024 1.069765 CTGTTGGACTGTGAGGCGT 59.930 57.895 0.00 0.00 0.00 5.68
963 1025 0.946221 CTGTTGGACTGTGAGGCGTC 60.946 60.000 0.00 0.00 0.00 5.19
965 1027 0.946221 GTTGGACTGTGAGGCGTCAG 60.946 60.000 9.83 1.51 37.65 3.51
966 1028 2.099652 TTGGACTGTGAGGCGTCAGG 62.100 60.000 9.83 8.41 36.17 3.86
967 1029 2.433318 GACTGTGAGGCGTCAGGC 60.433 66.667 9.83 0.00 44.19 4.85
987 1049 0.741221 GAGCCCGTCTTAGCCTGTTG 60.741 60.000 0.00 0.00 0.00 3.33
999 1061 1.899814 AGCCTGTTGTCGTCCATAAGA 59.100 47.619 0.00 0.00 0.00 2.10
1000 1062 2.093973 AGCCTGTTGTCGTCCATAAGAG 60.094 50.000 0.00 0.00 0.00 2.85
1001 1063 2.271800 CCTGTTGTCGTCCATAAGAGC 58.728 52.381 0.00 0.00 0.00 4.09
1002 1064 1.920574 CTGTTGTCGTCCATAAGAGCG 59.079 52.381 0.00 0.00 0.00 5.03
1003 1065 1.278238 GTTGTCGTCCATAAGAGCGG 58.722 55.000 0.00 0.00 0.00 5.52
1004 1066 1.135199 GTTGTCGTCCATAAGAGCGGA 60.135 52.381 0.00 0.00 0.00 5.54
1005 1067 0.738975 TGTCGTCCATAAGAGCGGAG 59.261 55.000 0.00 0.00 29.98 4.63
1006 1068 1.022735 GTCGTCCATAAGAGCGGAGA 58.977 55.000 0.00 0.00 29.98 3.71
1007 1069 1.002251 GTCGTCCATAAGAGCGGAGAG 60.002 57.143 0.00 0.00 29.98 3.20
1008 1070 1.134189 TCGTCCATAAGAGCGGAGAGA 60.134 52.381 0.00 0.00 29.98 3.10
1009 1071 1.265635 CGTCCATAAGAGCGGAGAGAG 59.734 57.143 0.00 0.00 29.98 3.20
1010 1072 1.611491 GTCCATAAGAGCGGAGAGAGG 59.389 57.143 0.00 0.00 29.98 3.69
1011 1073 0.316841 CCATAAGAGCGGAGAGAGGC 59.683 60.000 0.00 0.00 0.00 4.70
1012 1074 0.039617 CATAAGAGCGGAGAGAGGCG 60.040 60.000 0.00 0.00 0.00 5.52
1013 1075 1.175983 ATAAGAGCGGAGAGAGGCGG 61.176 60.000 0.00 0.00 0.00 6.13
1091 1170 0.392461 GCCGGCTATCTGAACAACCA 60.392 55.000 22.15 0.00 0.00 3.67
1096 1175 3.679917 CGGCTATCTGAACAACCACATCT 60.680 47.826 0.00 0.00 0.00 2.90
1102 1181 2.304180 CTGAACAACCACATCTCCTCCT 59.696 50.000 0.00 0.00 0.00 3.69
1148 1233 4.430765 CGGGGAAGACGTCGTGGG 62.431 72.222 9.23 0.00 0.00 4.61
1204 1505 1.139095 GCTCCGGGTACGAGTTCAG 59.861 63.158 0.00 0.00 44.60 3.02
1213 1514 2.288886 GGTACGAGTTCAGTTGAGGCTT 60.289 50.000 0.00 0.00 0.00 4.35
1214 1515 2.622064 ACGAGTTCAGTTGAGGCTTT 57.378 45.000 0.00 0.00 0.00 3.51
1222 1523 2.373169 TCAGTTGAGGCTTTGGATCAGT 59.627 45.455 0.00 0.00 0.00 3.41
1267 1571 2.490148 AAGATCGGCGAGCGGATGA 61.490 57.895 20.18 2.22 36.37 2.92
1280 1584 1.541233 GCGGATGAATTCGGATGAGGT 60.541 52.381 0.04 0.00 0.00 3.85
1281 1585 2.288825 GCGGATGAATTCGGATGAGGTA 60.289 50.000 0.04 0.00 0.00 3.08
1285 1589 3.159353 TGAATTCGGATGAGGTACACG 57.841 47.619 0.04 0.00 0.00 4.49
1286 1590 2.159156 TGAATTCGGATGAGGTACACGG 60.159 50.000 0.04 0.00 0.00 4.94
1287 1591 1.481871 ATTCGGATGAGGTACACGGT 58.518 50.000 0.00 0.00 0.00 4.83
1289 1593 0.322726 TCGGATGAGGTACACGGTGA 60.323 55.000 16.29 0.00 0.00 4.02
1291 1595 0.179108 GGATGAGGTACACGGTGAGC 60.179 60.000 16.29 8.24 0.00 4.26
1312 1616 1.243902 TGAGGACAAAACCGCCATTC 58.756 50.000 0.00 0.00 34.73 2.67
1344 1648 1.812922 CAGAGGCGAGCATGTGGAC 60.813 63.158 0.00 0.00 0.00 4.02
1386 1690 2.203070 GGCGAGGTTGCGGATGAT 60.203 61.111 0.00 0.00 35.06 2.45
1421 1788 4.387256 GGACAAGATCAAGAACAAGACGAG 59.613 45.833 0.00 0.00 0.00 4.18
1451 1836 0.958822 ATGGACCGAGGCAAAACAAC 59.041 50.000 0.00 0.00 0.00 3.32
1453 1838 1.141254 TGGACCGAGGCAAAACAACTA 59.859 47.619 0.00 0.00 0.00 2.24
1454 1839 1.804748 GGACCGAGGCAAAACAACTAG 59.195 52.381 0.00 0.00 0.00 2.57
1456 1841 1.202770 ACCGAGGCAAAACAACTAGCT 60.203 47.619 0.00 0.00 0.00 3.32
1457 1842 1.464997 CCGAGGCAAAACAACTAGCTC 59.535 52.381 0.00 0.00 0.00 4.09
1615 2039 2.808543 GACGGCATCAGAAAAGAGTTGT 59.191 45.455 0.00 0.00 0.00 3.32
1764 2230 2.575921 TGGAGGATGATCAGGAGGTT 57.424 50.000 0.09 0.00 0.00 3.50
1784 2250 7.365652 GGAGGTTTATGATTCCTACCTTCAAGA 60.366 40.741 0.00 0.00 39.25 3.02
1956 5334 7.226720 AGGATCGATCGCATGTTAACTATTTTT 59.773 33.333 18.81 0.00 0.00 1.94
1957 5335 7.530861 GGATCGATCGCATGTTAACTATTTTTC 59.469 37.037 18.81 0.00 0.00 2.29
1958 5336 7.534085 TCGATCGCATGTTAACTATTTTTCT 57.466 32.000 11.09 0.00 0.00 2.52
1959 5337 7.970384 TCGATCGCATGTTAACTATTTTTCTT 58.030 30.769 11.09 0.00 0.00 2.52
1960 5338 7.902917 TCGATCGCATGTTAACTATTTTTCTTG 59.097 33.333 11.09 0.00 0.00 3.02
1961 5339 7.692291 CGATCGCATGTTAACTATTTTTCTTGT 59.308 33.333 0.26 0.00 0.00 3.16
1962 5340 9.341899 GATCGCATGTTAACTATTTTTCTTGTT 57.658 29.630 7.22 0.00 0.00 2.83
1981 5359 9.638239 TTCTTGTTAATTGCTTTGTATGATTCC 57.362 29.630 0.00 0.00 0.00 3.01
1982 5360 9.023962 TCTTGTTAATTGCTTTGTATGATTCCT 57.976 29.630 0.00 0.00 0.00 3.36
1992 5370 8.733458 TGCTTTGTATGATTCCTATATCAATGC 58.267 33.333 0.00 0.00 38.01 3.56
1993 5371 8.733458 GCTTTGTATGATTCCTATATCAATGCA 58.267 33.333 0.00 0.00 38.01 3.96
1995 5373 7.854557 TGTATGATTCCTATATCAATGCAGC 57.145 36.000 0.00 0.00 38.01 5.25
1996 5374 7.627311 TGTATGATTCCTATATCAATGCAGCT 58.373 34.615 0.00 0.00 38.01 4.24
1997 5375 7.551617 TGTATGATTCCTATATCAATGCAGCTG 59.448 37.037 10.11 10.11 38.01 4.24
1998 5376 6.117975 TGATTCCTATATCAATGCAGCTGA 57.882 37.500 20.43 2.70 31.82 4.26
1999 5377 6.718294 TGATTCCTATATCAATGCAGCTGAT 58.282 36.000 20.43 16.03 37.32 2.90
2000 5378 7.173032 TGATTCCTATATCAATGCAGCTGATT 58.827 34.615 20.43 11.49 35.21 2.57
2001 5379 7.336176 TGATTCCTATATCAATGCAGCTGATTC 59.664 37.037 20.43 0.00 35.21 2.52
2002 5380 5.494724 TCCTATATCAATGCAGCTGATTCC 58.505 41.667 20.43 0.00 35.21 3.01
2003 5381 5.250082 TCCTATATCAATGCAGCTGATTCCT 59.750 40.000 20.43 6.46 35.21 3.36
2004 5382 5.944599 CCTATATCAATGCAGCTGATTCCTT 59.055 40.000 20.43 0.00 35.21 3.36
2005 5383 5.961396 ATATCAATGCAGCTGATTCCTTC 57.039 39.130 20.43 0.00 35.21 3.46
2006 5384 2.372264 TCAATGCAGCTGATTCCTTCC 58.628 47.619 20.43 0.00 0.00 3.46
2007 5385 2.025605 TCAATGCAGCTGATTCCTTCCT 60.026 45.455 20.43 0.00 0.00 3.36
2008 5386 2.758979 CAATGCAGCTGATTCCTTCCTT 59.241 45.455 20.43 0.00 0.00 3.36
2009 5387 2.592102 TGCAGCTGATTCCTTCCTTT 57.408 45.000 20.43 0.00 0.00 3.11
2010 5388 2.165167 TGCAGCTGATTCCTTCCTTTG 58.835 47.619 20.43 0.00 0.00 2.77
2011 5389 2.165998 GCAGCTGATTCCTTCCTTTGT 58.834 47.619 20.43 0.00 0.00 2.83
2012 5390 2.163211 GCAGCTGATTCCTTCCTTTGTC 59.837 50.000 20.43 0.00 0.00 3.18
2013 5391 2.417933 CAGCTGATTCCTTCCTTTGTCG 59.582 50.000 8.42 0.00 0.00 4.35
2014 5392 1.131315 GCTGATTCCTTCCTTTGTCGC 59.869 52.381 0.00 0.00 0.00 5.19
2015 5393 2.426522 CTGATTCCTTCCTTTGTCGCA 58.573 47.619 0.00 0.00 0.00 5.10
2016 5394 2.813754 CTGATTCCTTCCTTTGTCGCAA 59.186 45.455 0.00 0.00 0.00 4.85
2017 5395 2.813754 TGATTCCTTCCTTTGTCGCAAG 59.186 45.455 0.00 0.00 0.00 4.01
2018 5396 2.341846 TTCCTTCCTTTGTCGCAAGT 57.658 45.000 0.00 0.00 39.48 3.16
2019 5397 3.478857 TTCCTTCCTTTGTCGCAAGTA 57.521 42.857 0.00 0.00 39.48 2.24
2020 5398 2.762745 TCCTTCCTTTGTCGCAAGTAC 58.237 47.619 0.00 0.00 39.48 2.73
2021 5399 2.367567 TCCTTCCTTTGTCGCAAGTACT 59.632 45.455 0.00 0.00 39.48 2.73
2022 5400 3.575256 TCCTTCCTTTGTCGCAAGTACTA 59.425 43.478 0.00 0.00 39.48 1.82
2023 5401 4.039488 TCCTTCCTTTGTCGCAAGTACTAA 59.961 41.667 0.00 0.00 39.48 2.24
2024 5402 4.935808 CCTTCCTTTGTCGCAAGTACTAAT 59.064 41.667 0.00 0.00 39.48 1.73
2025 5403 5.411669 CCTTCCTTTGTCGCAAGTACTAATT 59.588 40.000 0.00 0.00 39.48 1.40
2026 5404 6.402226 CCTTCCTTTGTCGCAAGTACTAATTC 60.402 42.308 0.00 0.00 39.48 2.17
2027 5405 5.543714 TCCTTTGTCGCAAGTACTAATTCA 58.456 37.500 0.00 0.00 39.48 2.57
2028 5406 6.170506 TCCTTTGTCGCAAGTACTAATTCAT 58.829 36.000 0.00 0.00 39.48 2.57
2029 5407 6.092122 TCCTTTGTCGCAAGTACTAATTCATG 59.908 38.462 0.00 0.00 39.48 3.07
2030 5408 5.794687 TTGTCGCAAGTACTAATTCATGG 57.205 39.130 0.00 0.00 39.48 3.66
2031 5409 4.827692 TGTCGCAAGTACTAATTCATGGT 58.172 39.130 0.00 0.00 39.48 3.55
2032 5410 5.242434 TGTCGCAAGTACTAATTCATGGTT 58.758 37.500 0.00 0.00 39.48 3.67
2033 5411 5.703592 TGTCGCAAGTACTAATTCATGGTTT 59.296 36.000 0.00 0.00 39.48 3.27
2034 5412 6.874664 TGTCGCAAGTACTAATTCATGGTTTA 59.125 34.615 0.00 0.00 39.48 2.01
2035 5413 7.551262 TGTCGCAAGTACTAATTCATGGTTTAT 59.449 33.333 0.00 0.00 39.48 1.40
2036 5414 8.395633 GTCGCAAGTACTAATTCATGGTTTATT 58.604 33.333 0.00 0.00 39.48 1.40
2037 5415 9.602568 TCGCAAGTACTAATTCATGGTTTATTA 57.397 29.630 0.00 0.00 39.48 0.98
2038 5416 9.864034 CGCAAGTACTAATTCATGGTTTATTAG 57.136 33.333 0.00 12.28 37.69 1.73
2049 5427 9.672673 ATTCATGGTTTATTAGGAATAGGATCG 57.327 33.333 0.00 0.00 0.00 3.69
2050 5428 8.430573 TCATGGTTTATTAGGAATAGGATCGA 57.569 34.615 0.00 0.00 0.00 3.59
2051 5429 9.046846 TCATGGTTTATTAGGAATAGGATCGAT 57.953 33.333 0.00 0.00 0.00 3.59
2052 5430 9.319143 CATGGTTTATTAGGAATAGGATCGATC 57.681 37.037 17.36 17.36 0.00 3.69
2053 5431 7.544622 TGGTTTATTAGGAATAGGATCGATCG 58.455 38.462 18.81 9.36 0.00 3.69
2054 5432 6.476053 GGTTTATTAGGAATAGGATCGATCGC 59.524 42.308 18.81 11.84 0.00 4.58
2055 5433 6.769134 TTATTAGGAATAGGATCGATCGCA 57.231 37.500 18.81 9.47 0.00 5.10
2056 5434 5.860941 ATTAGGAATAGGATCGATCGCAT 57.139 39.130 18.81 11.33 0.00 4.73
2057 5435 3.516981 AGGAATAGGATCGATCGCATG 57.483 47.619 18.81 0.00 0.00 4.06
2058 5436 2.828520 AGGAATAGGATCGATCGCATGT 59.171 45.455 18.81 3.61 0.00 3.21
2059 5437 3.259374 AGGAATAGGATCGATCGCATGTT 59.741 43.478 18.81 11.50 0.00 2.71
2060 5438 3.369147 GGAATAGGATCGATCGCATGTTG 59.631 47.826 18.81 0.00 0.00 3.33
2061 5439 3.942130 ATAGGATCGATCGCATGTTGA 57.058 42.857 18.81 0.00 0.00 3.18
2062 5440 1.858091 AGGATCGATCGCATGTTGAC 58.142 50.000 18.81 2.10 0.00 3.18
2063 5441 1.410517 AGGATCGATCGCATGTTGACT 59.589 47.619 18.81 4.43 0.00 3.41
2140 5522 0.105401 TACACACCCAGACAGGTCCA 60.105 55.000 0.00 0.00 38.39 4.02
2452 5843 7.446001 TGCAATTCATTCAGTGTGTGTAATA 57.554 32.000 0.00 0.00 0.00 0.98
2459 5850 3.932822 TCAGTGTGTGTAATAATGGCGT 58.067 40.909 0.00 0.00 0.00 5.68
2510 5901 1.648504 CATCTCGTGCAATCTCAGCA 58.351 50.000 0.00 0.00 40.19 4.41
3004 6446 0.685458 GCCTACTCTCCCGGTGGTTA 60.685 60.000 0.00 0.00 0.00 2.85
3220 6762 5.069119 TGAACCTATTGCTGTATCGATCTGT 59.931 40.000 0.00 0.00 0.00 3.41
3289 6836 7.632898 GCCAAGTCTAGATGGTGTATTTCTACA 60.633 40.741 12.88 0.00 39.00 2.74
3380 6930 5.028549 ACTATGCATAGTGTCTGGAAAGG 57.971 43.478 33.31 8.63 41.77 3.11
3382 6932 3.057969 TGCATAGTGTCTGGAAAGGTG 57.942 47.619 0.00 0.00 0.00 4.00
3384 6934 2.744202 GCATAGTGTCTGGAAAGGTGTG 59.256 50.000 0.00 0.00 0.00 3.82
3386 6936 2.622064 AGTGTCTGGAAAGGTGTGTC 57.378 50.000 0.00 0.00 0.00 3.67
3387 6937 2.119495 AGTGTCTGGAAAGGTGTGTCT 58.881 47.619 0.00 0.00 0.00 3.41
3388 6938 2.158900 AGTGTCTGGAAAGGTGTGTCTG 60.159 50.000 0.00 0.00 0.00 3.51
3390 6940 2.503765 TGTCTGGAAAGGTGTGTCTGAA 59.496 45.455 0.00 0.00 0.00 3.02
3392 6942 3.945285 GTCTGGAAAGGTGTGTCTGAAAA 59.055 43.478 0.00 0.00 0.00 2.29
3393 6943 4.580580 GTCTGGAAAGGTGTGTCTGAAAAT 59.419 41.667 0.00 0.00 0.00 1.82
3395 6945 3.888930 TGGAAAGGTGTGTCTGAAAATCC 59.111 43.478 0.00 0.00 0.00 3.01
3396 6946 3.888930 GGAAAGGTGTGTCTGAAAATCCA 59.111 43.478 0.00 0.00 0.00 3.41
3397 6947 4.261614 GGAAAGGTGTGTCTGAAAATCCAC 60.262 45.833 0.00 0.00 0.00 4.02
3399 6949 3.744660 AGGTGTGTCTGAAAATCCACTC 58.255 45.455 0.00 0.00 0.00 3.51
3403 6953 5.279506 GGTGTGTCTGAAAATCCACTCTCTA 60.280 44.000 0.00 0.00 0.00 2.43
3404 6954 6.223852 GTGTGTCTGAAAATCCACTCTCTAA 58.776 40.000 0.00 0.00 0.00 2.10
3553 7126 3.395210 TTCACTGGTGAATGTGCGT 57.605 47.368 11.53 0.00 43.90 5.24
3554 7127 1.225855 TTCACTGGTGAATGTGCGTC 58.774 50.000 11.53 0.00 43.90 5.19
3603 7176 3.669251 ACTTGCTCCTGAACTACTGAC 57.331 47.619 0.00 0.00 0.00 3.51
3625 7198 6.038161 TGACCAGTCTTGTTTAACTTGTGATG 59.962 38.462 0.00 0.00 0.00 3.07
3645 7218 2.038952 TGAACTTGGTGCTCAGCTATGT 59.961 45.455 0.00 0.00 0.00 2.29
3672 7300 3.537580 GACGTTATGATACCCTTTGCCA 58.462 45.455 0.00 0.00 0.00 4.92
3744 7380 6.649141 TCAAGTACCAAGCTTTGTGTGTATAG 59.351 38.462 13.20 0.00 0.00 1.31
3767 7403 7.068692 AGCGACTACAAATTGTTATGTTACC 57.931 36.000 3.17 0.00 0.00 2.85
3769 7405 7.389607 AGCGACTACAAATTGTTATGTTACCTT 59.610 33.333 3.17 0.00 0.00 3.50
3770 7406 7.480542 GCGACTACAAATTGTTATGTTACCTTG 59.519 37.037 3.17 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.806818 CTCCATGAAGATGCCGATTCTG 59.193 50.000 0.00 0.00 0.00 3.02
5 6 1.146930 GCCTCCATGAAGATGCCGA 59.853 57.895 0.00 0.00 0.00 5.54
7 8 0.749454 AACGCCTCCATGAAGATGCC 60.749 55.000 0.00 0.00 0.00 4.40
67 69 4.469657 TCATGCTCCACTTTAGGTGTTTT 58.530 39.130 0.00 0.00 43.94 2.43
79 81 2.191641 GGAGGCCTCATGCTCCAC 59.808 66.667 33.29 10.33 40.92 4.02
80 82 3.092511 GGGAGGCCTCATGCTCCA 61.093 66.667 33.29 0.00 38.37 3.86
85 87 4.181010 CCGGTGGGAGGCCTCATG 62.181 72.222 33.29 16.87 34.06 3.07
96 98 1.949847 ATCTCGACTCTTGCCGGTGG 61.950 60.000 1.90 0.00 0.00 4.61
98 100 1.668101 GGATCTCGACTCTTGCCGGT 61.668 60.000 1.90 0.00 0.00 5.28
111 113 1.787057 ATCGAGGCGTCGTGGATCTC 61.787 60.000 26.11 0.00 46.85 2.75
112 114 1.824329 ATCGAGGCGTCGTGGATCT 60.824 57.895 26.11 5.12 46.85 2.75
151 153 2.840038 ACATTGCCACTGGTCTATCTCA 59.160 45.455 0.00 0.00 0.00 3.27
166 168 1.298859 AAGCCTTCCGTCGACATTGC 61.299 55.000 17.16 10.09 0.00 3.56
169 171 0.320374 TTCAAGCCTTCCGTCGACAT 59.680 50.000 17.16 0.00 0.00 3.06
172 174 0.601841 GGTTTCAAGCCTTCCGTCGA 60.602 55.000 0.00 0.00 0.00 4.20
173 175 0.602905 AGGTTTCAAGCCTTCCGTCG 60.603 55.000 0.00 0.00 31.04 5.12
176 178 3.181510 CGATTAAGGTTTCAAGCCTTCCG 60.182 47.826 9.12 8.17 44.47 4.30
178 180 3.190535 TGCGATTAAGGTTTCAAGCCTTC 59.809 43.478 9.12 0.00 44.47 3.46
183 185 4.788100 CGAACATGCGATTAAGGTTTCAAG 59.212 41.667 0.00 0.00 0.00 3.02
185 187 3.425625 GCGAACATGCGATTAAGGTTTCA 60.426 43.478 0.00 0.00 0.00 2.69
187 189 2.159435 GGCGAACATGCGATTAAGGTTT 60.159 45.455 0.00 0.00 35.06 3.27
209 211 4.116328 CCTTCGTCTCGCTCGCCA 62.116 66.667 0.00 0.00 0.00 5.69
210 212 4.856607 CCCTTCGTCTCGCTCGCC 62.857 72.222 0.00 0.00 0.00 5.54
211 213 4.856607 CCCCTTCGTCTCGCTCGC 62.857 72.222 0.00 0.00 0.00 5.03
225 227 0.841961 GATACAACACCCCCTACCCC 59.158 60.000 0.00 0.00 0.00 4.95
229 231 5.339695 GGAAAATGAGATACAACACCCCCTA 60.340 44.000 0.00 0.00 0.00 3.53
231 233 3.699538 GGAAAATGAGATACAACACCCCC 59.300 47.826 0.00 0.00 0.00 5.40
236 238 5.640147 AGGGTTGGAAAATGAGATACAACA 58.360 37.500 0.00 0.00 39.77 3.33
247 249 6.950860 ATTGGAATGTAAGGGTTGGAAAAT 57.049 33.333 0.00 0.00 0.00 1.82
248 250 7.013834 AGTATTGGAATGTAAGGGTTGGAAAA 58.986 34.615 0.00 0.00 0.00 2.29
252 254 6.419791 TGTAGTATTGGAATGTAAGGGTTGG 58.580 40.000 0.00 0.00 0.00 3.77
261 263 9.125026 GGATGAATCTTTGTAGTATTGGAATGT 57.875 33.333 0.00 0.00 0.00 2.71
266 268 6.425114 CGAGGGATGAATCTTTGTAGTATTGG 59.575 42.308 0.00 0.00 0.00 3.16
272 274 3.134458 GGCGAGGGATGAATCTTTGTAG 58.866 50.000 0.00 0.00 0.00 2.74
312 314 1.755395 CATGGGGCCATGTCACCAG 60.755 63.158 3.17 0.00 43.84 4.00
324 326 1.856629 ATGCTTCTTTCCACATGGGG 58.143 50.000 8.05 8.05 37.22 4.96
325 327 4.272489 TCTAATGCTTCTTTCCACATGGG 58.728 43.478 0.00 0.00 35.41 4.00
329 331 8.420222 TCAAAATTTCTAATGCTTCTTTCCACA 58.580 29.630 0.00 0.00 0.00 4.17
337 339 8.831715 TTTCCCTTCAAAATTTCTAATGCTTC 57.168 30.769 0.00 0.00 0.00 3.86
339 341 9.223099 CATTTTCCCTTCAAAATTTCTAATGCT 57.777 29.630 0.00 0.00 34.37 3.79
340 342 9.218440 TCATTTTCCCTTCAAAATTTCTAATGC 57.782 29.630 0.00 0.00 34.37 3.56
771 822 4.841841 CGAAAGTTATTCGCGCAACTTAAA 59.158 37.500 23.94 5.38 42.62 1.52
778 829 3.733024 ATTTCGAAAGTTATTCGCGCA 57.267 38.095 16.80 0.00 41.30 6.09
781 832 5.544621 ACGTGTATTTCGAAAGTTATTCGC 58.455 37.500 16.80 3.42 41.30 4.70
786 837 4.864247 GGCCTACGTGTATTTCGAAAGTTA 59.136 41.667 16.80 1.85 0.00 2.24
789 840 3.255725 TGGCCTACGTGTATTTCGAAAG 58.744 45.455 16.80 4.69 0.00 2.62
793 844 4.609691 AAAATGGCCTACGTGTATTTCG 57.390 40.909 3.32 0.00 0.00 3.46
826 887 9.893305 CTCTCCTTTTCGCTATTTTTAGAAAAA 57.107 29.630 2.82 2.82 40.58 1.94
859 920 8.952278 GGGTGTTTTCTTCCTTTTTGTTATTTT 58.048 29.630 0.00 0.00 0.00 1.82
860 921 7.554835 GGGGTGTTTTCTTCCTTTTTGTTATTT 59.445 33.333 0.00 0.00 0.00 1.40
861 922 7.051623 GGGGTGTTTTCTTCCTTTTTGTTATT 58.948 34.615 0.00 0.00 0.00 1.40
862 923 6.408776 GGGGGTGTTTTCTTCCTTTTTGTTAT 60.409 38.462 0.00 0.00 0.00 1.89
863 924 5.104859 GGGGGTGTTTTCTTCCTTTTTGTTA 60.105 40.000 0.00 0.00 0.00 2.41
864 925 4.323945 GGGGGTGTTTTCTTCCTTTTTGTT 60.324 41.667 0.00 0.00 0.00 2.83
865 926 3.199071 GGGGGTGTTTTCTTCCTTTTTGT 59.801 43.478 0.00 0.00 0.00 2.83
866 927 3.198853 TGGGGGTGTTTTCTTCCTTTTTG 59.801 43.478 0.00 0.00 0.00 2.44
867 928 3.455849 TGGGGGTGTTTTCTTCCTTTTT 58.544 40.909 0.00 0.00 0.00 1.94
868 929 3.123392 TGGGGGTGTTTTCTTCCTTTT 57.877 42.857 0.00 0.00 0.00 2.27
870 931 2.858787 TTGGGGGTGTTTTCTTCCTT 57.141 45.000 0.00 0.00 0.00 3.36
872 933 3.916359 TTTTTGGGGGTGTTTTCTTCC 57.084 42.857 0.00 0.00 0.00 3.46
873 934 6.072728 GCATAATTTTTGGGGGTGTTTTCTTC 60.073 38.462 0.00 0.00 0.00 2.87
874 935 5.767665 GCATAATTTTTGGGGGTGTTTTCTT 59.232 36.000 0.00 0.00 0.00 2.52
875 936 5.312895 GCATAATTTTTGGGGGTGTTTTCT 58.687 37.500 0.00 0.00 0.00 2.52
876 937 4.153296 CGCATAATTTTTGGGGGTGTTTTC 59.847 41.667 0.00 0.00 0.00 2.29
877 938 4.068599 CGCATAATTTTTGGGGGTGTTTT 58.931 39.130 0.00 0.00 0.00 2.43
878 939 3.669536 CGCATAATTTTTGGGGGTGTTT 58.330 40.909 0.00 0.00 0.00 2.83
879 940 2.614229 GCGCATAATTTTTGGGGGTGTT 60.614 45.455 0.30 0.00 0.00 3.32
880 941 1.066502 GCGCATAATTTTTGGGGGTGT 60.067 47.619 0.30 0.00 0.00 4.16
881 942 1.650825 GCGCATAATTTTTGGGGGTG 58.349 50.000 0.30 0.00 0.00 4.61
882 943 0.539518 GGCGCATAATTTTTGGGGGT 59.460 50.000 10.83 0.00 0.00 4.95
883 944 0.539051 TGGCGCATAATTTTTGGGGG 59.461 50.000 10.83 0.00 0.00 5.40
884 945 2.278854 CTTGGCGCATAATTTTTGGGG 58.721 47.619 10.83 0.00 0.00 4.96
885 946 1.665169 GCTTGGCGCATAATTTTTGGG 59.335 47.619 10.83 0.52 38.92 4.12
899 960 3.491652 GCTCTCGAACCGCTTGGC 61.492 66.667 0.00 0.00 35.53 4.52
900 961 2.048222 TGCTCTCGAACCGCTTGG 60.048 61.111 0.00 0.00 39.35 3.61
901 962 1.347817 GACTGCTCTCGAACCGCTTG 61.348 60.000 0.00 0.00 0.00 4.01
902 963 1.080434 GACTGCTCTCGAACCGCTT 60.080 57.895 0.00 0.00 0.00 4.68
903 964 2.569134 GACTGCTCTCGAACCGCT 59.431 61.111 0.00 0.00 0.00 5.52
904 965 2.876645 CGACTGCTCTCGAACCGC 60.877 66.667 0.00 0.00 35.58 5.68
905 966 2.202492 CCGACTGCTCTCGAACCG 60.202 66.667 5.31 0.00 35.58 4.44
906 967 1.153997 GTCCGACTGCTCTCGAACC 60.154 63.158 5.31 0.00 35.58 3.62
907 968 1.153997 GGTCCGACTGCTCTCGAAC 60.154 63.158 5.31 0.00 35.58 3.95
908 969 1.602605 TGGTCCGACTGCTCTCGAA 60.603 57.895 5.31 0.00 35.58 3.71
909 970 2.033602 TGGTCCGACTGCTCTCGA 59.966 61.111 5.31 0.00 35.58 4.04
910 971 2.179517 GTGGTCCGACTGCTCTCG 59.820 66.667 0.00 0.00 0.00 4.04
911 972 2.179517 CGTGGTCCGACTGCTCTC 59.820 66.667 0.00 0.00 39.56 3.20
912 973 2.282251 TCGTGGTCCGACTGCTCT 60.282 61.111 0.00 0.00 41.60 4.09
928 989 0.602905 ACAGCCCAGCTACGTTGTTC 60.603 55.000 0.00 0.00 36.40 3.18
948 1010 2.574018 CCTGACGCCTCACAGTCCA 61.574 63.158 0.00 0.00 36.61 4.02
949 1011 2.262915 CCTGACGCCTCACAGTCC 59.737 66.667 0.00 0.00 36.61 3.85
962 1024 2.361992 TAAGACGGGCTCGCCTGA 60.362 61.111 22.85 0.00 45.10 3.86
965 1027 4.893601 GGCTAAGACGGGCTCGCC 62.894 72.222 5.51 8.19 40.63 5.54
966 1028 3.839432 AGGCTAAGACGGGCTCGC 61.839 66.667 5.51 0.00 40.63 5.03
967 1029 2.105128 CAGGCTAAGACGGGCTCG 59.895 66.667 3.27 3.27 37.49 5.03
968 1030 0.741221 CAACAGGCTAAGACGGGCTC 60.741 60.000 0.00 0.00 37.49 4.70
969 1031 1.296715 CAACAGGCTAAGACGGGCT 59.703 57.895 0.00 0.00 40.24 5.19
970 1032 1.003718 ACAACAGGCTAAGACGGGC 60.004 57.895 0.00 0.00 0.00 6.13
971 1033 0.736325 CGACAACAGGCTAAGACGGG 60.736 60.000 0.00 0.00 0.00 5.28
974 1036 1.000506 TGGACGACAACAGGCTAAGAC 59.999 52.381 0.00 0.00 0.00 3.01
976 1038 2.386661 ATGGACGACAACAGGCTAAG 57.613 50.000 0.00 0.00 0.00 2.18
977 1039 3.512329 TCTTATGGACGACAACAGGCTAA 59.488 43.478 0.00 0.00 0.00 3.09
978 1040 3.093814 TCTTATGGACGACAACAGGCTA 58.906 45.455 0.00 0.00 0.00 3.93
979 1041 1.899814 TCTTATGGACGACAACAGGCT 59.100 47.619 0.00 0.00 0.00 4.58
987 1049 1.002251 CTCTCCGCTCTTATGGACGAC 60.002 57.143 0.00 0.00 0.00 4.34
1020 1082 1.450491 CGTGTTGGTGGTGGTGACA 60.450 57.895 0.00 0.00 38.70 3.58
1021 1083 1.153329 TCGTGTTGGTGGTGGTGAC 60.153 57.895 0.00 0.00 0.00 3.67
1022 1084 1.145156 CTCGTGTTGGTGGTGGTGA 59.855 57.895 0.00 0.00 0.00 4.02
1023 1085 0.462937 TTCTCGTGTTGGTGGTGGTG 60.463 55.000 0.00 0.00 0.00 4.17
1024 1086 0.463116 GTTCTCGTGTTGGTGGTGGT 60.463 55.000 0.00 0.00 0.00 4.16
1025 1087 0.179056 AGTTCTCGTGTTGGTGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
1026 1088 0.937304 CAGTTCTCGTGTTGGTGGTG 59.063 55.000 0.00 0.00 0.00 4.17
1027 1089 0.814010 GCAGTTCTCGTGTTGGTGGT 60.814 55.000 0.00 0.00 0.00 4.16
1073 1143 1.338674 TGTGGTTGTTCAGATAGCCGG 60.339 52.381 0.00 0.00 0.00 6.13
1078 1157 4.162320 GGAGGAGATGTGGTTGTTCAGATA 59.838 45.833 0.00 0.00 0.00 1.98
1091 1170 2.569404 GTTCTTGTGGAGGAGGAGATGT 59.431 50.000 0.00 0.00 0.00 3.06
1096 1175 0.687354 GCAGTTCTTGTGGAGGAGGA 59.313 55.000 0.00 0.00 0.00 3.71
1152 1411 2.114488 TTTTGAACGGCGGAGGGCTA 62.114 55.000 13.24 0.00 42.94 3.93
1204 1505 2.227388 CACACTGATCCAAAGCCTCAAC 59.773 50.000 0.00 0.00 0.00 3.18
1213 1514 0.994247 ATGGCCTCACACTGATCCAA 59.006 50.000 3.32 0.00 34.27 3.53
1214 1515 0.253894 CATGGCCTCACACTGATCCA 59.746 55.000 3.32 0.00 34.80 3.41
1267 1571 1.829222 ACCGTGTACCTCATCCGAATT 59.171 47.619 0.00 0.00 0.00 2.17
1280 1584 0.530744 GTCCTCATGCTCACCGTGTA 59.469 55.000 0.00 0.00 0.00 2.90
1281 1585 1.293498 GTCCTCATGCTCACCGTGT 59.707 57.895 0.00 0.00 0.00 4.49
1285 1589 1.541588 GGTTTTGTCCTCATGCTCACC 59.458 52.381 0.00 0.00 0.00 4.02
1286 1590 1.197721 CGGTTTTGTCCTCATGCTCAC 59.802 52.381 0.00 0.00 0.00 3.51
1287 1591 1.522668 CGGTTTTGTCCTCATGCTCA 58.477 50.000 0.00 0.00 0.00 4.26
1289 1593 1.244019 GGCGGTTTTGTCCTCATGCT 61.244 55.000 0.00 0.00 0.00 3.79
1291 1595 1.176527 ATGGCGGTTTTGTCCTCATG 58.823 50.000 0.00 0.00 0.00 3.07
1312 1616 1.521010 CTCTGGCAGGCATCGACTG 60.521 63.158 15.73 0.00 42.51 3.51
1344 1648 4.155462 CACTTGAATTGGGTCATCTCTGTG 59.845 45.833 0.00 0.00 0.00 3.66
1386 1690 3.071457 TGATCTTGTCCTTGTGAAGCTCA 59.929 43.478 0.00 0.00 0.00 4.26
1421 1788 3.551407 GGTCCATCTCCTCCGGGC 61.551 72.222 0.00 0.00 0.00 6.13
1439 1824 2.504367 TGGAGCTAGTTGTTTTGCCTC 58.496 47.619 0.00 0.00 0.00 4.70
1469 1860 2.124109 AGAGCCGCTCGATCTCCA 60.124 61.111 14.71 0.00 35.36 3.86
1603 2027 4.965814 TGCAGATCAGACAACTCTTTTCT 58.034 39.130 0.00 0.00 0.00 2.52
1717 2183 1.006400 CCTTGCCTTCTCCTTGGGATT 59.994 52.381 0.00 0.00 0.00 3.01
1764 2230 7.182026 TCAAGGTCTTGAAGGTAGGAATCATAA 59.818 37.037 10.61 0.00 45.56 1.90
1784 2250 5.941788 AGTGTCCAACTTTAGATTCAAGGT 58.058 37.500 0.00 0.00 34.57 3.50
1870 2388 7.339721 GGAATCTGCATTGATAGGAATCATCAT 59.660 37.037 0.00 0.00 41.73 2.45
1872 2390 6.885376 AGGAATCTGCATTGATAGGAATCATC 59.115 38.462 0.00 0.00 41.73 2.92
1956 5334 9.023962 AGGAATCATACAAAGCAATTAACAAGA 57.976 29.630 0.00 0.00 0.00 3.02
1966 5344 8.733458 GCATTGATATAGGAATCATACAAAGCA 58.267 33.333 0.00 0.00 35.84 3.91
1967 5345 8.733458 TGCATTGATATAGGAATCATACAAAGC 58.267 33.333 0.00 0.00 35.84 3.51
1969 5347 8.733458 GCTGCATTGATATAGGAATCATACAAA 58.267 33.333 0.00 0.00 35.84 2.83
1970 5348 8.105197 AGCTGCATTGATATAGGAATCATACAA 58.895 33.333 1.02 0.00 35.84 2.41
1971 5349 7.551617 CAGCTGCATTGATATAGGAATCATACA 59.448 37.037 0.00 0.00 35.84 2.29
1972 5350 7.767659 TCAGCTGCATTGATATAGGAATCATAC 59.232 37.037 9.47 0.00 35.84 2.39
1973 5351 7.854337 TCAGCTGCATTGATATAGGAATCATA 58.146 34.615 9.47 0.00 35.84 2.15
1974 5352 6.718294 TCAGCTGCATTGATATAGGAATCAT 58.282 36.000 9.47 0.00 35.84 2.45
1975 5353 6.117975 TCAGCTGCATTGATATAGGAATCA 57.882 37.500 9.47 0.00 34.07 2.57
1976 5354 7.201714 GGAATCAGCTGCATTGATATAGGAATC 60.202 40.741 9.47 6.42 34.30 2.52
1977 5355 6.602406 GGAATCAGCTGCATTGATATAGGAAT 59.398 38.462 9.47 0.00 34.30 3.01
1978 5356 5.942236 GGAATCAGCTGCATTGATATAGGAA 59.058 40.000 9.47 0.00 34.30 3.36
1979 5357 5.250082 AGGAATCAGCTGCATTGATATAGGA 59.750 40.000 9.47 0.00 34.30 2.94
1980 5358 5.498393 AGGAATCAGCTGCATTGATATAGG 58.502 41.667 9.47 0.00 34.30 2.57
1981 5359 6.093771 GGAAGGAATCAGCTGCATTGATATAG 59.906 42.308 9.47 0.00 34.30 1.31
1982 5360 5.942236 GGAAGGAATCAGCTGCATTGATATA 59.058 40.000 9.47 0.00 34.30 0.86
1983 5361 4.765856 GGAAGGAATCAGCTGCATTGATAT 59.234 41.667 9.47 0.00 34.30 1.63
1984 5362 4.139786 GGAAGGAATCAGCTGCATTGATA 58.860 43.478 9.47 0.00 34.30 2.15
1985 5363 2.957006 GGAAGGAATCAGCTGCATTGAT 59.043 45.455 9.47 7.77 36.87 2.57
1986 5364 2.025605 AGGAAGGAATCAGCTGCATTGA 60.026 45.455 9.47 3.81 0.00 2.57
1987 5365 2.376109 AGGAAGGAATCAGCTGCATTG 58.624 47.619 9.47 0.00 0.00 2.82
1988 5366 2.822707 AGGAAGGAATCAGCTGCATT 57.177 45.000 9.47 9.85 0.00 3.56
1989 5367 2.758979 CAAAGGAAGGAATCAGCTGCAT 59.241 45.455 9.47 0.00 0.00 3.96
1990 5368 2.165167 CAAAGGAAGGAATCAGCTGCA 58.835 47.619 9.47 0.00 0.00 4.41
1991 5369 2.163211 GACAAAGGAAGGAATCAGCTGC 59.837 50.000 9.47 0.00 0.00 5.25
1992 5370 2.417933 CGACAAAGGAAGGAATCAGCTG 59.582 50.000 7.63 7.63 0.00 4.24
1993 5371 2.704572 CGACAAAGGAAGGAATCAGCT 58.295 47.619 0.00 0.00 0.00 4.24
1994 5372 1.131315 GCGACAAAGGAAGGAATCAGC 59.869 52.381 0.00 0.00 0.00 4.26
1995 5373 2.426522 TGCGACAAAGGAAGGAATCAG 58.573 47.619 0.00 0.00 0.00 2.90
1996 5374 2.559698 TGCGACAAAGGAAGGAATCA 57.440 45.000 0.00 0.00 0.00 2.57
1997 5375 2.814336 ACTTGCGACAAAGGAAGGAATC 59.186 45.455 3.52 0.00 42.74 2.52
1998 5376 2.863809 ACTTGCGACAAAGGAAGGAAT 58.136 42.857 3.52 0.00 42.74 3.01
1999 5377 2.341846 ACTTGCGACAAAGGAAGGAA 57.658 45.000 3.52 0.00 42.74 3.36
2000 5378 2.367567 AGTACTTGCGACAAAGGAAGGA 59.632 45.455 0.00 0.00 42.74 3.36
2001 5379 2.767505 AGTACTTGCGACAAAGGAAGG 58.232 47.619 0.00 0.00 42.74 3.46
2002 5380 6.147164 TGAATTAGTACTTGCGACAAAGGAAG 59.853 38.462 0.00 0.00 43.81 3.46
2003 5381 5.992829 TGAATTAGTACTTGCGACAAAGGAA 59.007 36.000 0.00 0.00 0.00 3.36
2004 5382 5.543714 TGAATTAGTACTTGCGACAAAGGA 58.456 37.500 0.00 0.00 0.00 3.36
2005 5383 5.856126 TGAATTAGTACTTGCGACAAAGG 57.144 39.130 0.00 0.00 0.00 3.11
2006 5384 6.128282 ACCATGAATTAGTACTTGCGACAAAG 60.128 38.462 0.00 0.00 0.00 2.77
2007 5385 5.703592 ACCATGAATTAGTACTTGCGACAAA 59.296 36.000 0.00 0.00 0.00 2.83
2008 5386 5.242434 ACCATGAATTAGTACTTGCGACAA 58.758 37.500 0.00 0.00 0.00 3.18
2009 5387 4.827692 ACCATGAATTAGTACTTGCGACA 58.172 39.130 0.00 0.00 0.00 4.35
2010 5388 5.796350 AACCATGAATTAGTACTTGCGAC 57.204 39.130 0.00 0.00 0.00 5.19
2011 5389 8.500753 AATAAACCATGAATTAGTACTTGCGA 57.499 30.769 0.00 0.00 0.00 5.10
2012 5390 9.864034 CTAATAAACCATGAATTAGTACTTGCG 57.136 33.333 0.00 0.00 31.47 4.85
2023 5401 9.672673 CGATCCTATTCCTAATAAACCATGAAT 57.327 33.333 0.00 0.00 0.00 2.57
2024 5402 8.876181 TCGATCCTATTCCTAATAAACCATGAA 58.124 33.333 0.00 0.00 0.00 2.57
2025 5403 8.430573 TCGATCCTATTCCTAATAAACCATGA 57.569 34.615 0.00 0.00 0.00 3.07
2026 5404 9.319143 GATCGATCCTATTCCTAATAAACCATG 57.681 37.037 14.76 0.00 0.00 3.66
2027 5405 8.198109 CGATCGATCCTATTCCTAATAAACCAT 58.802 37.037 19.51 0.00 0.00 3.55
2028 5406 7.544622 CGATCGATCCTATTCCTAATAAACCA 58.455 38.462 19.51 0.00 0.00 3.67
2029 5407 6.476053 GCGATCGATCCTATTCCTAATAAACC 59.524 42.308 21.57 0.00 0.00 3.27
2030 5408 7.033791 TGCGATCGATCCTATTCCTAATAAAC 58.966 38.462 21.57 0.00 0.00 2.01
2031 5409 7.165460 TGCGATCGATCCTATTCCTAATAAA 57.835 36.000 21.57 0.00 0.00 1.40
2032 5410 6.769134 TGCGATCGATCCTATTCCTAATAA 57.231 37.500 21.57 0.00 0.00 1.40
2033 5411 6.321435 ACATGCGATCGATCCTATTCCTAATA 59.679 38.462 21.57 0.00 0.00 0.98
2034 5412 5.127845 ACATGCGATCGATCCTATTCCTAAT 59.872 40.000 21.57 0.00 0.00 1.73
2035 5413 4.462834 ACATGCGATCGATCCTATTCCTAA 59.537 41.667 21.57 0.00 0.00 2.69
2036 5414 4.017126 ACATGCGATCGATCCTATTCCTA 58.983 43.478 21.57 0.00 0.00 2.94
2037 5415 2.828520 ACATGCGATCGATCCTATTCCT 59.171 45.455 21.57 0.00 0.00 3.36
2038 5416 3.238108 ACATGCGATCGATCCTATTCC 57.762 47.619 21.57 0.00 0.00 3.01
2039 5417 4.090642 GTCAACATGCGATCGATCCTATTC 59.909 45.833 21.57 0.00 0.00 1.75
2040 5418 3.990469 GTCAACATGCGATCGATCCTATT 59.010 43.478 21.57 4.76 0.00 1.73
2041 5419 3.256879 AGTCAACATGCGATCGATCCTAT 59.743 43.478 21.57 11.00 0.00 2.57
2042 5420 2.623416 AGTCAACATGCGATCGATCCTA 59.377 45.455 21.57 9.11 0.00 2.94
2043 5421 1.410517 AGTCAACATGCGATCGATCCT 59.589 47.619 21.57 4.65 0.00 3.24
2044 5422 1.858091 AGTCAACATGCGATCGATCC 58.142 50.000 21.57 12.54 0.00 3.36
2045 5423 5.582439 AAATAGTCAACATGCGATCGATC 57.418 39.130 21.57 15.68 0.00 3.69
2046 5424 5.991328 AAAATAGTCAACATGCGATCGAT 57.009 34.783 21.57 0.00 0.00 3.59
2047 5425 5.580691 AGAAAAATAGTCAACATGCGATCGA 59.419 36.000 21.57 4.34 0.00 3.59
2048 5426 5.799960 AGAAAAATAGTCAACATGCGATCG 58.200 37.500 11.69 11.69 0.00 3.69
2049 5427 9.000018 GTTAAGAAAAATAGTCAACATGCGATC 58.000 33.333 0.00 0.00 0.00 3.69
2050 5428 8.511321 TGTTAAGAAAAATAGTCAACATGCGAT 58.489 29.630 0.00 0.00 0.00 4.58
2051 5429 7.866729 TGTTAAGAAAAATAGTCAACATGCGA 58.133 30.769 0.00 0.00 0.00 5.10
2052 5430 8.500837 TTGTTAAGAAAAATAGTCAACATGCG 57.499 30.769 0.00 0.00 0.00 4.73
2060 5438 9.777843 CGCACAATTTTGTTAAGAAAAATAGTC 57.222 29.630 13.77 4.36 39.91 2.59
2061 5439 9.308318 ACGCACAATTTTGTTAAGAAAAATAGT 57.692 25.926 13.77 9.92 39.91 2.12
2062 5440 9.566624 CACGCACAATTTTGTTAAGAAAAATAG 57.433 29.630 13.77 9.40 39.91 1.73
2063 5441 8.058915 GCACGCACAATTTTGTTAAGAAAAATA 58.941 29.630 13.77 0.00 39.91 1.40
2452 5843 2.275380 GGGTCCTGCAAACGCCATT 61.275 57.895 5.01 0.00 0.00 3.16
2459 5850 0.555769 ACAGAAAGGGGTCCTGCAAA 59.444 50.000 0.00 0.00 32.13 3.68
2510 5901 4.352298 ACTTCAAACTCAAGAGGGGATTCT 59.648 41.667 1.73 0.00 0.00 2.40
3004 6446 1.749063 CCATGACATGAGCTTGCACAT 59.251 47.619 17.24 0.00 0.00 3.21
3228 6770 7.700656 CAGTCGATACACACAGTCAAACATATA 59.299 37.037 0.00 0.00 0.00 0.86
3229 6771 6.531594 CAGTCGATACACACAGTCAAACATAT 59.468 38.462 0.00 0.00 0.00 1.78
3292 6839 9.045223 CATGACTTGCAAGTTATAGCAGTAATA 57.955 33.333 29.82 5.16 42.39 0.98
3345 6895 3.003394 TGCATAGTGTGGCTGCTTAAT 57.997 42.857 0.00 0.00 36.84 1.40
3378 6928 3.392616 AGAGTGGATTTTCAGACACACCT 59.607 43.478 0.00 0.00 36.35 4.00
3379 6929 3.744660 AGAGTGGATTTTCAGACACACC 58.255 45.455 0.00 0.00 36.35 4.16
3380 6930 4.636249 AGAGAGTGGATTTTCAGACACAC 58.364 43.478 0.00 0.00 36.35 3.82
3382 6932 6.459923 AGTTAGAGAGTGGATTTTCAGACAC 58.540 40.000 0.00 0.00 0.00 3.67
3384 6934 6.811170 CAGAGTTAGAGAGTGGATTTTCAGAC 59.189 42.308 0.00 0.00 0.00 3.51
3386 6936 6.696411 ACAGAGTTAGAGAGTGGATTTTCAG 58.304 40.000 0.00 0.00 0.00 3.02
3387 6937 6.672266 ACAGAGTTAGAGAGTGGATTTTCA 57.328 37.500 0.00 0.00 0.00 2.69
3388 6938 8.088981 TGTAACAGAGTTAGAGAGTGGATTTTC 58.911 37.037 0.00 0.00 0.00 2.29
3390 6940 7.540474 TGTAACAGAGTTAGAGAGTGGATTT 57.460 36.000 0.00 0.00 0.00 2.17
3392 6942 6.722129 AGTTGTAACAGAGTTAGAGAGTGGAT 59.278 38.462 0.00 0.00 0.00 3.41
3393 6943 6.069331 AGTTGTAACAGAGTTAGAGAGTGGA 58.931 40.000 0.00 0.00 0.00 4.02
3395 6945 8.325421 TCTAGTTGTAACAGAGTTAGAGAGTG 57.675 38.462 0.00 0.00 0.00 3.51
3396 6946 8.921353 TTCTAGTTGTAACAGAGTTAGAGAGT 57.079 34.615 0.00 0.00 0.00 3.24
3397 6947 9.997482 GATTCTAGTTGTAACAGAGTTAGAGAG 57.003 37.037 0.00 0.00 0.00 3.20
3403 6953 9.003658 CCATTTGATTCTAGTTGTAACAGAGTT 57.996 33.333 0.00 0.00 0.00 3.01
3404 6954 8.375506 TCCATTTGATTCTAGTTGTAACAGAGT 58.624 33.333 0.00 0.00 0.00 3.24
3486 7059 3.056035 CCGACTAGGCAGAGGTTTTAAGT 60.056 47.826 0.00 0.00 0.00 2.24
3553 7126 2.760650 CTGCATACTGTGTACTCCTGGA 59.239 50.000 0.00 0.00 0.00 3.86
3554 7127 2.159043 CCTGCATACTGTGTACTCCTGG 60.159 54.545 0.00 0.00 0.00 4.45
3603 7176 6.618287 TCATCACAAGTTAAACAAGACTGG 57.382 37.500 0.00 0.00 0.00 4.00
3625 7198 2.704572 ACATAGCTGAGCACCAAGTTC 58.295 47.619 7.39 0.00 0.00 3.01
3645 7218 2.769663 AGGGTATCATAACGTCCTGCAA 59.230 45.455 0.00 0.00 0.00 4.08
3692 7320 7.040132 ACAAACAAACAACCACCAATTTGAAAT 60.040 29.630 0.00 0.00 35.93 2.17
3697 7331 5.765182 TGAACAAACAAACAACCACCAATTT 59.235 32.000 0.00 0.00 0.00 1.82
3701 7335 4.202264 ACTTGAACAAACAAACAACCACCA 60.202 37.500 0.00 0.00 0.00 4.17
3744 7380 7.068692 AGGTAACATAACAATTTGTAGTCGC 57.931 36.000 1.76 0.43 41.41 5.19
4033 7677 1.658994 ACGTTCAAGAAAACCGAGCA 58.341 45.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.