Multiple sequence alignment - TraesCS2A01G574200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G574200 chr2A 100.000 3326 0 0 1 3326 769253710 769257035 0.000000e+00 6143.0
1 TraesCS2A01G574200 chr2A 77.680 681 81 35 1297 1973 764785044 764784431 1.900000e-92 350.0
2 TraesCS2A01G574200 chr2D 94.447 2629 100 29 678 3282 644137487 644140093 0.000000e+00 4004.0
3 TraesCS2A01G574200 chr2D 81.517 936 84 45 2357 3272 644156005 644156871 0.000000e+00 688.0
4 TraesCS2A01G574200 chr2D 82.295 305 30 9 1297 1601 638890038 638889758 3.320000e-60 243.0
5 TraesCS2A01G574200 chr2B 94.052 2337 88 33 700 3004 792978641 792976324 0.000000e+00 3498.0
6 TraesCS2A01G574200 chr2B 93.122 189 11 1 3117 3305 792976325 792976139 3.270000e-70 276.0
7 TraesCS2A01G574200 chr3B 100.000 28 0 0 295 322 784868157 784868184 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G574200 chr2A 769253710 769257035 3325 False 6143 6143 100.000 1 3326 1 chr2A.!!$F1 3325
1 TraesCS2A01G574200 chr2A 764784431 764785044 613 True 350 350 77.680 1297 1973 1 chr2A.!!$R1 676
2 TraesCS2A01G574200 chr2D 644137487 644140093 2606 False 4004 4004 94.447 678 3282 1 chr2D.!!$F1 2604
3 TraesCS2A01G574200 chr2D 644156005 644156871 866 False 688 688 81.517 2357 3272 1 chr2D.!!$F2 915
4 TraesCS2A01G574200 chr2B 792976139 792978641 2502 True 1887 3498 93.587 700 3305 2 chr2B.!!$R1 2605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 432 0.039437 CGCGAGGGTAATATGCGTCT 60.039 55.0 0.00 0.0 43.50 4.18 F
1284 1329 0.167033 CGGAGATCCTGTCGATAGCG 59.833 60.0 3.22 0.0 39.35 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2184 0.121197 TCTCCTTGTCCAGGGGGAAT 59.879 55.0 0.00 0.0 44.86 3.01 R
2563 2614 0.035056 ACCAAGCACTGCCCAGATAC 60.035 55.0 1.69 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.329231 CGAAACTTCCTGCGCACA 58.671 55.556 5.66 0.00 0.00 4.57
19 20 1.082756 CGAAACTTCCTGCGCACAC 60.083 57.895 5.66 0.00 0.00 3.82
20 21 1.771073 CGAAACTTCCTGCGCACACA 61.771 55.000 5.66 0.00 0.00 3.72
23 24 1.442769 AACTTCCTGCGCACACATAG 58.557 50.000 5.66 2.16 0.00 2.23
24 25 0.608130 ACTTCCTGCGCACACATAGA 59.392 50.000 5.66 0.00 0.00 1.98
25 26 1.001974 ACTTCCTGCGCACACATAGAA 59.998 47.619 5.66 2.07 0.00 2.10
26 27 2.283298 CTTCCTGCGCACACATAGAAT 58.717 47.619 5.66 0.00 0.00 2.40
27 28 1.655484 TCCTGCGCACACATAGAATG 58.345 50.000 5.66 0.00 0.00 2.67
28 29 1.066215 TCCTGCGCACACATAGAATGT 60.066 47.619 5.66 0.00 46.22 2.71
29 30 1.328680 CCTGCGCACACATAGAATGTC 59.671 52.381 5.66 0.00 42.70 3.06
30 31 2.001872 CTGCGCACACATAGAATGTCA 58.998 47.619 5.66 0.00 42.70 3.58
31 32 2.416202 CTGCGCACACATAGAATGTCAA 59.584 45.455 5.66 0.00 42.70 3.18
32 33 2.416202 TGCGCACACATAGAATGTCAAG 59.584 45.455 5.66 0.00 42.70 3.02
33 34 2.789092 GCGCACACATAGAATGTCAAGC 60.789 50.000 0.30 0.00 42.70 4.01
34 35 2.674852 CGCACACATAGAATGTCAAGCT 59.325 45.455 0.00 0.00 42.70 3.74
35 36 3.484721 CGCACACATAGAATGTCAAGCTG 60.485 47.826 0.00 0.00 42.70 4.24
36 37 3.438087 GCACACATAGAATGTCAAGCTGT 59.562 43.478 0.00 0.00 42.70 4.40
37 38 4.631377 GCACACATAGAATGTCAAGCTGTA 59.369 41.667 0.00 0.00 42.70 2.74
38 39 5.446473 GCACACATAGAATGTCAAGCTGTAC 60.446 44.000 0.00 0.00 42.70 2.90
39 40 4.864806 ACACATAGAATGTCAAGCTGTACG 59.135 41.667 0.00 0.00 42.70 3.67
40 41 3.865745 ACATAGAATGTCAAGCTGTACGC 59.134 43.478 0.00 2.08 39.92 4.42
41 42 1.350193 AGAATGTCAAGCTGTACGCG 58.650 50.000 3.53 3.53 45.59 6.01
42 43 1.068474 GAATGTCAAGCTGTACGCGT 58.932 50.000 19.17 19.17 45.59 6.01
47 48 4.554163 AAGCTGTACGCGTGAGAC 57.446 55.556 24.59 13.33 45.59 3.36
48 49 1.658114 AAGCTGTACGCGTGAGACA 59.342 52.632 24.59 17.64 45.59 3.41
49 50 0.243907 AAGCTGTACGCGTGAGACAT 59.756 50.000 24.59 1.04 45.59 3.06
50 51 0.243907 AGCTGTACGCGTGAGACATT 59.756 50.000 24.59 6.97 45.59 2.71
51 52 1.068474 GCTGTACGCGTGAGACATTT 58.932 50.000 24.59 0.00 0.00 2.32
52 53 1.459592 GCTGTACGCGTGAGACATTTT 59.540 47.619 24.59 0.00 0.00 1.82
53 54 2.096417 GCTGTACGCGTGAGACATTTTT 60.096 45.455 24.59 0.00 0.00 1.94
87 88 9.691362 TTGTTAGCATTTAGAAATGAGTTTTCC 57.309 29.630 17.21 0.12 46.72 3.13
88 89 8.855110 TGTTAGCATTTAGAAATGAGTTTTCCA 58.145 29.630 17.21 3.24 46.72 3.53
89 90 9.691362 GTTAGCATTTAGAAATGAGTTTTCCAA 57.309 29.630 17.21 0.00 46.72 3.53
91 92 8.822652 AGCATTTAGAAATGAGTTTTCCAAAG 57.177 30.769 17.21 0.00 46.72 2.77
92 93 7.874528 AGCATTTAGAAATGAGTTTTCCAAAGG 59.125 33.333 17.21 0.00 46.72 3.11
93 94 7.118245 GCATTTAGAAATGAGTTTTCCAAAGGG 59.882 37.037 17.21 0.00 46.72 3.95
94 95 7.669089 TTTAGAAATGAGTTTTCCAAAGGGT 57.331 32.000 0.00 0.00 44.06 4.34
95 96 5.791336 AGAAATGAGTTTTCCAAAGGGTC 57.209 39.130 0.00 0.00 44.06 4.46
96 97 4.588951 AGAAATGAGTTTTCCAAAGGGTCC 59.411 41.667 0.00 0.00 44.06 4.46
97 98 3.611025 ATGAGTTTTCCAAAGGGTCCA 57.389 42.857 0.00 0.00 34.93 4.02
98 99 3.611025 TGAGTTTTCCAAAGGGTCCAT 57.389 42.857 0.00 0.00 34.93 3.41
99 100 3.922375 TGAGTTTTCCAAAGGGTCCATT 58.078 40.909 0.00 0.00 34.93 3.16
100 101 3.895041 TGAGTTTTCCAAAGGGTCCATTC 59.105 43.478 0.00 0.00 34.93 2.67
101 102 3.895041 GAGTTTTCCAAAGGGTCCATTCA 59.105 43.478 0.00 0.00 34.93 2.57
102 103 4.492646 AGTTTTCCAAAGGGTCCATTCAT 58.507 39.130 0.00 0.00 34.93 2.57
103 104 4.284234 AGTTTTCCAAAGGGTCCATTCATG 59.716 41.667 0.00 0.00 34.93 3.07
104 105 3.541242 TTCCAAAGGGTCCATTCATGT 57.459 42.857 0.00 0.00 34.93 3.21
105 106 4.666412 TTCCAAAGGGTCCATTCATGTA 57.334 40.909 0.00 0.00 34.93 2.29
106 107 4.879295 TCCAAAGGGTCCATTCATGTAT 57.121 40.909 0.00 0.00 34.93 2.29
107 108 5.205517 TCCAAAGGGTCCATTCATGTATT 57.794 39.130 0.00 0.00 34.93 1.89
108 109 5.588845 TCCAAAGGGTCCATTCATGTATTT 58.411 37.500 0.00 0.00 34.93 1.40
109 110 6.022315 TCCAAAGGGTCCATTCATGTATTTT 58.978 36.000 0.00 0.00 34.93 1.82
110 111 6.500049 TCCAAAGGGTCCATTCATGTATTTTT 59.500 34.615 0.00 0.00 34.93 1.94
127 128 1.309950 TTTTTCGCGTTGACCATCCA 58.690 45.000 5.77 0.00 0.00 3.41
128 129 1.309950 TTTTCGCGTTGACCATCCAA 58.690 45.000 5.77 0.00 0.00 3.53
129 130 1.309950 TTTCGCGTTGACCATCCAAA 58.690 45.000 5.77 0.00 0.00 3.28
130 131 1.529226 TTCGCGTTGACCATCCAAAT 58.471 45.000 5.77 0.00 0.00 2.32
131 132 0.801872 TCGCGTTGACCATCCAAATG 59.198 50.000 5.77 0.00 0.00 2.32
132 133 0.521291 CGCGTTGACCATCCAAATGT 59.479 50.000 0.00 0.00 0.00 2.71
133 134 1.735018 CGCGTTGACCATCCAAATGTA 59.265 47.619 0.00 0.00 0.00 2.29
134 135 2.354510 CGCGTTGACCATCCAAATGTAT 59.645 45.455 0.00 0.00 0.00 2.29
135 136 3.694734 GCGTTGACCATCCAAATGTATG 58.305 45.455 0.00 0.00 0.00 2.39
136 137 3.376859 GCGTTGACCATCCAAATGTATGA 59.623 43.478 0.00 0.00 0.00 2.15
137 138 4.730613 GCGTTGACCATCCAAATGTATGAC 60.731 45.833 0.00 0.00 0.00 3.06
138 139 4.201910 CGTTGACCATCCAAATGTATGACC 60.202 45.833 0.00 0.00 0.00 4.02
139 140 3.540617 TGACCATCCAAATGTATGACCG 58.459 45.455 0.00 0.00 0.00 4.79
140 141 3.198853 TGACCATCCAAATGTATGACCGA 59.801 43.478 0.00 0.00 0.00 4.69
141 142 4.141505 TGACCATCCAAATGTATGACCGAT 60.142 41.667 0.00 0.00 0.00 4.18
142 143 4.792068 ACCATCCAAATGTATGACCGATT 58.208 39.130 0.00 0.00 0.00 3.34
143 144 5.935945 ACCATCCAAATGTATGACCGATTA 58.064 37.500 0.00 0.00 0.00 1.75
144 145 6.542821 ACCATCCAAATGTATGACCGATTAT 58.457 36.000 0.00 0.00 0.00 1.28
145 146 6.430925 ACCATCCAAATGTATGACCGATTATG 59.569 38.462 0.00 0.00 0.00 1.90
146 147 6.430925 CCATCCAAATGTATGACCGATTATGT 59.569 38.462 0.00 0.00 0.00 2.29
147 148 7.606073 CCATCCAAATGTATGACCGATTATGTA 59.394 37.037 0.00 0.00 0.00 2.29
148 149 7.956420 TCCAAATGTATGACCGATTATGTAC 57.044 36.000 0.00 0.00 0.00 2.90
149 150 7.732025 TCCAAATGTATGACCGATTATGTACT 58.268 34.615 0.00 0.00 0.00 2.73
150 151 8.208224 TCCAAATGTATGACCGATTATGTACTT 58.792 33.333 0.00 0.00 0.00 2.24
151 152 9.483916 CCAAATGTATGACCGATTATGTACTTA 57.516 33.333 0.00 0.00 0.00 2.24
159 160 8.349568 TGACCGATTATGTACTTATAGATGCT 57.650 34.615 0.00 0.00 0.00 3.79
160 161 8.803235 TGACCGATTATGTACTTATAGATGCTT 58.197 33.333 0.00 0.00 0.00 3.91
168 169 8.994429 ATGTACTTATAGATGCTTAGATGTGC 57.006 34.615 0.00 0.00 0.00 4.57
169 170 8.183104 TGTACTTATAGATGCTTAGATGTGCT 57.817 34.615 0.00 0.00 0.00 4.40
170 171 8.300286 TGTACTTATAGATGCTTAGATGTGCTC 58.700 37.037 0.00 0.00 0.00 4.26
171 172 6.696411 ACTTATAGATGCTTAGATGTGCTCC 58.304 40.000 0.00 0.00 0.00 4.70
172 173 6.496565 ACTTATAGATGCTTAGATGTGCTCCT 59.503 38.462 0.00 0.00 0.00 3.69
173 174 5.822132 ATAGATGCTTAGATGTGCTCCTT 57.178 39.130 0.00 0.00 0.00 3.36
174 175 4.500499 AGATGCTTAGATGTGCTCCTTT 57.500 40.909 0.00 0.00 0.00 3.11
175 176 4.853007 AGATGCTTAGATGTGCTCCTTTT 58.147 39.130 0.00 0.00 0.00 2.27
176 177 5.259632 AGATGCTTAGATGTGCTCCTTTTT 58.740 37.500 0.00 0.00 0.00 1.94
293 294 5.929697 AATGATGAGTGTAATGGTATGCG 57.070 39.130 0.00 0.00 0.00 4.73
294 295 3.727726 TGATGAGTGTAATGGTATGCGG 58.272 45.455 0.00 0.00 0.00 5.69
295 296 3.133901 TGATGAGTGTAATGGTATGCGGT 59.866 43.478 0.00 0.00 0.00 5.68
296 297 4.342665 TGATGAGTGTAATGGTATGCGGTA 59.657 41.667 0.00 0.00 0.00 4.02
297 298 4.948341 TGAGTGTAATGGTATGCGGTAT 57.052 40.909 0.00 0.00 0.00 2.73
298 299 5.284861 TGAGTGTAATGGTATGCGGTATT 57.715 39.130 0.00 0.00 0.00 1.89
299 300 5.053811 TGAGTGTAATGGTATGCGGTATTG 58.946 41.667 0.00 0.00 0.00 1.90
300 301 5.031066 AGTGTAATGGTATGCGGTATTGT 57.969 39.130 0.00 0.00 0.00 2.71
301 302 6.164417 AGTGTAATGGTATGCGGTATTGTA 57.836 37.500 0.00 0.00 0.00 2.41
302 303 6.220930 AGTGTAATGGTATGCGGTATTGTAG 58.779 40.000 0.00 0.00 0.00 2.74
303 304 6.041182 AGTGTAATGGTATGCGGTATTGTAGA 59.959 38.462 0.00 0.00 0.00 2.59
304 305 6.872020 GTGTAATGGTATGCGGTATTGTAGAT 59.128 38.462 0.00 0.00 0.00 1.98
305 306 6.871492 TGTAATGGTATGCGGTATTGTAGATG 59.129 38.462 0.00 0.00 0.00 2.90
306 307 4.948341 TGGTATGCGGTATTGTAGATGT 57.052 40.909 0.00 0.00 0.00 3.06
307 308 5.284861 TGGTATGCGGTATTGTAGATGTT 57.715 39.130 0.00 0.00 0.00 2.71
308 309 5.294356 TGGTATGCGGTATTGTAGATGTTC 58.706 41.667 0.00 0.00 0.00 3.18
309 310 5.163395 TGGTATGCGGTATTGTAGATGTTCA 60.163 40.000 0.00 0.00 0.00 3.18
310 311 5.932303 GGTATGCGGTATTGTAGATGTTCAT 59.068 40.000 0.00 0.00 0.00 2.57
311 312 7.094631 GGTATGCGGTATTGTAGATGTTCATA 58.905 38.462 0.00 0.00 0.00 2.15
312 313 7.601130 GGTATGCGGTATTGTAGATGTTCATAA 59.399 37.037 0.00 0.00 0.00 1.90
313 314 8.984764 GTATGCGGTATTGTAGATGTTCATAAA 58.015 33.333 0.00 0.00 0.00 1.40
314 315 8.621532 ATGCGGTATTGTAGATGTTCATAAAT 57.378 30.769 0.00 0.00 0.00 1.40
315 316 8.445275 TGCGGTATTGTAGATGTTCATAAATT 57.555 30.769 0.00 0.00 0.00 1.82
316 317 8.898761 TGCGGTATTGTAGATGTTCATAAATTT 58.101 29.630 0.00 0.00 0.00 1.82
317 318 9.730420 GCGGTATTGTAGATGTTCATAAATTTT 57.270 29.630 0.00 0.00 0.00 1.82
404 405 9.581099 AAACAAAACTTGTACTGAAATACTTGG 57.419 29.630 0.00 0.00 44.59 3.61
405 406 8.288689 ACAAAACTTGTACTGAAATACTTGGT 57.711 30.769 0.00 0.00 43.27 3.67
406 407 8.403236 ACAAAACTTGTACTGAAATACTTGGTC 58.597 33.333 0.00 0.00 43.27 4.02
407 408 6.780706 AACTTGTACTGAAATACTTGGTCG 57.219 37.500 0.00 0.00 0.00 4.79
408 409 5.850614 ACTTGTACTGAAATACTTGGTCGT 58.149 37.500 0.00 0.00 0.00 4.34
409 410 5.694910 ACTTGTACTGAAATACTTGGTCGTG 59.305 40.000 0.00 0.00 0.00 4.35
410 411 5.204409 TGTACTGAAATACTTGGTCGTGT 57.796 39.130 0.00 0.00 0.00 4.49
411 412 4.986034 TGTACTGAAATACTTGGTCGTGTG 59.014 41.667 0.00 0.00 0.00 3.82
412 413 2.806244 ACTGAAATACTTGGTCGTGTGC 59.194 45.455 0.00 0.00 0.00 4.57
413 414 1.795872 TGAAATACTTGGTCGTGTGCG 59.204 47.619 0.00 0.00 39.92 5.34
414 415 0.515564 AAATACTTGGTCGTGTGCGC 59.484 50.000 0.00 0.00 38.14 6.09
415 416 1.623081 AATACTTGGTCGTGTGCGCG 61.623 55.000 0.00 0.00 38.14 6.86
416 417 2.480853 ATACTTGGTCGTGTGCGCGA 62.481 55.000 12.10 3.58 38.68 5.87
417 418 3.767230 CTTGGTCGTGTGCGCGAG 61.767 66.667 12.10 0.00 41.85 5.03
421 422 4.409218 GTCGTGTGCGCGAGGGTA 62.409 66.667 12.10 0.00 41.85 3.69
422 423 3.672447 TCGTGTGCGCGAGGGTAA 61.672 61.111 12.10 0.00 35.83 2.85
423 424 2.508439 CGTGTGCGCGAGGGTAAT 60.508 61.111 12.10 0.00 0.00 1.89
424 425 1.226745 CGTGTGCGCGAGGGTAATA 60.227 57.895 12.10 0.00 0.00 0.98
425 426 0.596600 CGTGTGCGCGAGGGTAATAT 60.597 55.000 12.10 0.00 0.00 1.28
426 427 0.859232 GTGTGCGCGAGGGTAATATG 59.141 55.000 12.10 0.00 0.00 1.78
427 428 0.878523 TGTGCGCGAGGGTAATATGC 60.879 55.000 12.10 0.00 0.00 3.14
429 430 4.647654 CGCGAGGGTAATATGCGT 57.352 55.556 0.00 0.00 43.50 5.24
430 431 2.431539 CGCGAGGGTAATATGCGTC 58.568 57.895 0.00 0.00 43.50 5.19
431 432 0.039437 CGCGAGGGTAATATGCGTCT 60.039 55.000 0.00 0.00 43.50 4.18
432 433 1.699343 GCGAGGGTAATATGCGTCTC 58.301 55.000 0.00 0.00 0.00 3.36
433 434 1.269998 GCGAGGGTAATATGCGTCTCT 59.730 52.381 0.00 0.00 0.00 3.10
434 435 2.922758 GCGAGGGTAATATGCGTCTCTG 60.923 54.545 0.00 0.00 0.00 3.35
435 436 2.552743 CGAGGGTAATATGCGTCTCTGA 59.447 50.000 0.00 0.00 0.00 3.27
436 437 3.191581 CGAGGGTAATATGCGTCTCTGAT 59.808 47.826 0.00 0.00 0.00 2.90
437 438 4.673061 CGAGGGTAATATGCGTCTCTGATC 60.673 50.000 0.00 0.00 0.00 2.92
438 439 4.411927 AGGGTAATATGCGTCTCTGATCT 58.588 43.478 0.00 0.00 0.00 2.75
439 440 5.571285 AGGGTAATATGCGTCTCTGATCTA 58.429 41.667 0.00 0.00 0.00 1.98
440 441 6.191315 AGGGTAATATGCGTCTCTGATCTAT 58.809 40.000 0.00 0.00 0.00 1.98
441 442 6.096141 AGGGTAATATGCGTCTCTGATCTATG 59.904 42.308 0.00 0.00 0.00 2.23
442 443 6.127591 GGGTAATATGCGTCTCTGATCTATGT 60.128 42.308 0.00 0.00 0.00 2.29
443 444 7.067129 GGGTAATATGCGTCTCTGATCTATGTA 59.933 40.741 0.00 0.00 0.00 2.29
444 445 8.126074 GGTAATATGCGTCTCTGATCTATGTAG 58.874 40.741 0.00 0.00 0.00 2.74
445 446 7.695480 AATATGCGTCTCTGATCTATGTAGT 57.305 36.000 0.00 0.00 0.00 2.73
446 447 7.695480 ATATGCGTCTCTGATCTATGTAGTT 57.305 36.000 0.00 0.00 0.00 2.24
447 448 5.425577 TGCGTCTCTGATCTATGTAGTTC 57.574 43.478 0.00 0.00 0.00 3.01
448 449 4.881850 TGCGTCTCTGATCTATGTAGTTCA 59.118 41.667 0.00 1.98 32.72 3.18
449 450 5.532779 TGCGTCTCTGATCTATGTAGTTCAT 59.467 40.000 0.00 0.00 40.25 2.57
450 451 6.083630 GCGTCTCTGATCTATGTAGTTCATC 58.916 44.000 0.00 0.00 37.91 2.92
451 452 6.303370 CGTCTCTGATCTATGTAGTTCATCG 58.697 44.000 0.00 2.97 37.91 3.84
452 453 6.607689 GTCTCTGATCTATGTAGTTCATCGG 58.392 44.000 0.00 0.00 37.91 4.18
453 454 6.428465 GTCTCTGATCTATGTAGTTCATCGGA 59.572 42.308 0.00 0.00 37.91 4.55
454 455 6.652900 TCTCTGATCTATGTAGTTCATCGGAG 59.347 42.308 14.21 14.21 36.74 4.63
455 456 5.182190 TCTGATCTATGTAGTTCATCGGAGC 59.818 44.000 0.00 0.00 37.91 4.70
456 457 4.827284 TGATCTATGTAGTTCATCGGAGCA 59.173 41.667 0.00 0.00 37.91 4.26
457 458 5.478332 TGATCTATGTAGTTCATCGGAGCAT 59.522 40.000 0.00 0.00 37.91 3.79
458 459 6.659242 TGATCTATGTAGTTCATCGGAGCATA 59.341 38.462 0.00 0.00 37.91 3.14
459 460 6.894339 TCTATGTAGTTCATCGGAGCATAA 57.106 37.500 0.00 0.00 37.91 1.90
460 461 7.284919 TCTATGTAGTTCATCGGAGCATAAA 57.715 36.000 0.00 0.00 37.91 1.40
461 462 7.722363 TCTATGTAGTTCATCGGAGCATAAAA 58.278 34.615 0.00 0.00 37.91 1.52
462 463 6.851222 ATGTAGTTCATCGGAGCATAAAAG 57.149 37.500 0.00 0.00 29.76 2.27
463 464 5.972935 TGTAGTTCATCGGAGCATAAAAGA 58.027 37.500 0.00 0.00 0.00 2.52
464 465 6.403049 TGTAGTTCATCGGAGCATAAAAGAA 58.597 36.000 0.00 0.00 0.00 2.52
465 466 6.876789 TGTAGTTCATCGGAGCATAAAAGAAA 59.123 34.615 0.00 0.00 0.00 2.52
466 467 7.552687 TGTAGTTCATCGGAGCATAAAAGAAAT 59.447 33.333 0.00 0.00 0.00 2.17
467 468 9.042008 GTAGTTCATCGGAGCATAAAAGAAATA 57.958 33.333 0.00 0.00 0.00 1.40
468 469 8.506168 AGTTCATCGGAGCATAAAAGAAATAA 57.494 30.769 0.00 0.00 0.00 1.40
469 470 8.956426 AGTTCATCGGAGCATAAAAGAAATAAA 58.044 29.630 0.00 0.00 0.00 1.40
470 471 9.567848 GTTCATCGGAGCATAAAAGAAATAAAA 57.432 29.630 0.00 0.00 0.00 1.52
492 493 8.707796 AAAATACTTATACTCTCTCCGATCCA 57.292 34.615 0.00 0.00 0.00 3.41
493 494 8.707796 AAATACTTATACTCTCTCCGATCCAA 57.292 34.615 0.00 0.00 0.00 3.53
494 495 8.707796 AATACTTATACTCTCTCCGATCCAAA 57.292 34.615 0.00 0.00 0.00 3.28
495 496 6.394025 ACTTATACTCTCTCCGATCCAAAC 57.606 41.667 0.00 0.00 0.00 2.93
496 497 6.130569 ACTTATACTCTCTCCGATCCAAACT 58.869 40.000 0.00 0.00 0.00 2.66
497 498 7.288560 ACTTATACTCTCTCCGATCCAAACTA 58.711 38.462 0.00 0.00 0.00 2.24
498 499 7.778853 ACTTATACTCTCTCCGATCCAAACTAA 59.221 37.037 0.00 0.00 0.00 2.24
499 500 8.707796 TTATACTCTCTCCGATCCAAACTAAT 57.292 34.615 0.00 0.00 0.00 1.73
500 501 5.941555 ACTCTCTCCGATCCAAACTAATT 57.058 39.130 0.00 0.00 0.00 1.40
501 502 5.665459 ACTCTCTCCGATCCAAACTAATTG 58.335 41.667 0.00 0.00 38.84 2.32
502 503 5.422331 ACTCTCTCCGATCCAAACTAATTGA 59.578 40.000 0.00 0.00 41.85 2.57
503 504 5.661458 TCTCTCCGATCCAAACTAATTGAC 58.339 41.667 0.00 0.00 41.85 3.18
504 505 5.186992 TCTCTCCGATCCAAACTAATTGACA 59.813 40.000 0.00 0.00 41.85 3.58
505 506 5.175859 TCTCCGATCCAAACTAATTGACAC 58.824 41.667 0.00 0.00 41.85 3.67
506 507 4.900684 TCCGATCCAAACTAATTGACACA 58.099 39.130 0.00 0.00 41.85 3.72
507 508 4.935205 TCCGATCCAAACTAATTGACACAG 59.065 41.667 0.00 0.00 41.85 3.66
508 509 4.935205 CCGATCCAAACTAATTGACACAGA 59.065 41.667 0.00 0.00 41.85 3.41
509 510 5.163854 CCGATCCAAACTAATTGACACAGAC 60.164 44.000 0.00 0.00 41.85 3.51
510 511 5.639506 CGATCCAAACTAATTGACACAGACT 59.360 40.000 0.00 0.00 41.85 3.24
511 512 6.183360 CGATCCAAACTAATTGACACAGACTC 60.183 42.308 0.00 0.00 41.85 3.36
512 513 6.174720 TCCAAACTAATTGACACAGACTCT 57.825 37.500 0.00 0.00 41.85 3.24
513 514 7.297936 TCCAAACTAATTGACACAGACTCTA 57.702 36.000 0.00 0.00 41.85 2.43
514 515 7.907389 TCCAAACTAATTGACACAGACTCTAT 58.093 34.615 0.00 0.00 41.85 1.98
515 516 9.031537 TCCAAACTAATTGACACAGACTCTATA 57.968 33.333 0.00 0.00 41.85 1.31
516 517 9.307121 CCAAACTAATTGACACAGACTCTATAG 57.693 37.037 0.00 0.00 41.85 1.31
517 518 9.862371 CAAACTAATTGACACAGACTCTATAGT 57.138 33.333 0.00 0.00 41.85 2.12
557 558 8.958119 ATAATTATGTAGATGTTGTGTCGGTT 57.042 30.769 0.00 0.00 0.00 4.44
559 560 8.780846 AATTATGTAGATGTTGTGTCGGTTAA 57.219 30.769 0.00 0.00 0.00 2.01
560 561 8.958119 ATTATGTAGATGTTGTGTCGGTTAAT 57.042 30.769 0.00 0.00 0.00 1.40
561 562 8.780846 TTATGTAGATGTTGTGTCGGTTAATT 57.219 30.769 0.00 0.00 0.00 1.40
562 563 7.681939 ATGTAGATGTTGTGTCGGTTAATTT 57.318 32.000 0.00 0.00 0.00 1.82
563 564 6.893759 TGTAGATGTTGTGTCGGTTAATTTG 58.106 36.000 0.00 0.00 0.00 2.32
564 565 5.371115 AGATGTTGTGTCGGTTAATTTGG 57.629 39.130 0.00 0.00 0.00 3.28
565 566 5.067273 AGATGTTGTGTCGGTTAATTTGGA 58.933 37.500 0.00 0.00 0.00 3.53
566 567 4.555348 TGTTGTGTCGGTTAATTTGGAC 57.445 40.909 0.00 0.00 0.00 4.02
567 568 3.002451 TGTTGTGTCGGTTAATTTGGACG 59.998 43.478 0.00 0.00 32.17 4.79
568 569 2.836262 TGTGTCGGTTAATTTGGACGT 58.164 42.857 0.00 0.00 32.17 4.34
569 570 3.204526 TGTGTCGGTTAATTTGGACGTT 58.795 40.909 0.00 0.00 32.17 3.99
570 571 3.002451 TGTGTCGGTTAATTTGGACGTTG 59.998 43.478 0.00 0.00 32.17 4.10
571 572 3.002553 GTGTCGGTTAATTTGGACGTTGT 59.997 43.478 0.00 0.00 32.17 3.32
572 573 4.210955 GTGTCGGTTAATTTGGACGTTGTA 59.789 41.667 0.00 0.00 32.17 2.41
573 574 4.813161 TGTCGGTTAATTTGGACGTTGTAA 59.187 37.500 0.00 0.00 32.17 2.41
574 575 5.295292 TGTCGGTTAATTTGGACGTTGTAAA 59.705 36.000 0.00 0.00 32.17 2.01
575 576 6.183360 TGTCGGTTAATTTGGACGTTGTAAAA 60.183 34.615 0.00 0.00 32.17 1.52
576 577 6.357766 GTCGGTTAATTTGGACGTTGTAAAAG 59.642 38.462 0.00 0.00 0.00 2.27
577 578 6.259608 TCGGTTAATTTGGACGTTGTAAAAGA 59.740 34.615 0.00 0.00 0.00 2.52
578 579 6.575942 CGGTTAATTTGGACGTTGTAAAAGAG 59.424 38.462 0.00 0.00 0.00 2.85
579 580 6.859508 GGTTAATTTGGACGTTGTAAAAGAGG 59.140 38.462 0.00 0.00 0.00 3.69
580 581 3.974871 TTTGGACGTTGTAAAAGAGGC 57.025 42.857 0.00 0.00 0.00 4.70
581 582 2.922740 TGGACGTTGTAAAAGAGGCT 57.077 45.000 0.00 0.00 0.00 4.58
582 583 4.339872 TTGGACGTTGTAAAAGAGGCTA 57.660 40.909 0.00 0.00 0.00 3.93
583 584 3.656559 TGGACGTTGTAAAAGAGGCTAC 58.343 45.455 0.00 0.00 0.00 3.58
584 585 3.069872 TGGACGTTGTAAAAGAGGCTACA 59.930 43.478 0.00 0.00 0.00 2.74
585 586 4.251268 GGACGTTGTAAAAGAGGCTACAT 58.749 43.478 0.00 0.00 0.00 2.29
586 587 4.329256 GGACGTTGTAAAAGAGGCTACATC 59.671 45.833 0.00 0.00 0.00 3.06
587 588 4.890088 ACGTTGTAAAAGAGGCTACATCA 58.110 39.130 0.00 0.00 0.00 3.07
588 589 5.488341 ACGTTGTAAAAGAGGCTACATCAT 58.512 37.500 0.00 0.00 0.00 2.45
589 590 5.581085 ACGTTGTAAAAGAGGCTACATCATC 59.419 40.000 0.00 0.00 0.00 2.92
590 591 5.580691 CGTTGTAAAAGAGGCTACATCATCA 59.419 40.000 0.00 0.00 0.00 3.07
591 592 6.092122 CGTTGTAAAAGAGGCTACATCATCAA 59.908 38.462 0.00 0.00 0.00 2.57
592 593 7.201644 CGTTGTAAAAGAGGCTACATCATCAAT 60.202 37.037 0.00 0.00 0.00 2.57
593 594 8.462016 GTTGTAAAAGAGGCTACATCATCAATT 58.538 33.333 0.00 0.00 0.00 2.32
594 595 9.679661 TTGTAAAAGAGGCTACATCATCAATTA 57.320 29.630 0.00 0.00 0.00 1.40
595 596 9.679661 TGTAAAAGAGGCTACATCATCAATTAA 57.320 29.630 0.00 0.00 0.00 1.40
604 605 9.979270 GGCTACATCATCAATTAATTAAGATCG 57.021 33.333 0.00 3.61 0.00 3.69
609 610 9.533983 CATCATCAATTAATTAAGATCGAACCG 57.466 33.333 0.00 0.00 0.00 4.44
610 611 7.572759 TCATCAATTAATTAAGATCGAACCGC 58.427 34.615 0.00 0.00 0.00 5.68
611 612 7.441157 TCATCAATTAATTAAGATCGAACCGCT 59.559 33.333 0.00 0.00 0.00 5.52
612 613 7.548196 TCAATTAATTAAGATCGAACCGCTT 57.452 32.000 0.00 0.00 0.00 4.68
613 614 7.406553 TCAATTAATTAAGATCGAACCGCTTG 58.593 34.615 0.00 0.00 0.00 4.01
614 615 5.728351 TTAATTAAGATCGAACCGCTTGG 57.272 39.130 0.00 0.00 39.35 3.61
615 616 3.536956 ATTAAGATCGAACCGCTTGGA 57.463 42.857 0.00 0.00 36.26 3.53
616 617 3.322211 TTAAGATCGAACCGCTTGGAA 57.678 42.857 0.00 0.00 36.26 3.53
617 618 1.439679 AAGATCGAACCGCTTGGAAC 58.560 50.000 0.00 0.00 36.26 3.62
618 619 0.320374 AGATCGAACCGCTTGGAACA 59.680 50.000 0.00 0.00 36.26 3.18
631 632 2.270434 TGGAACAAGGGGATAGCTCT 57.730 50.000 0.00 0.00 31.92 4.09
632 633 2.119495 TGGAACAAGGGGATAGCTCTC 58.881 52.381 0.00 0.00 31.92 3.20
633 634 2.293184 TGGAACAAGGGGATAGCTCTCT 60.293 50.000 0.00 0.00 31.92 3.10
634 635 2.367241 GGAACAAGGGGATAGCTCTCTC 59.633 54.545 0.00 0.00 0.00 3.20
635 636 2.856760 ACAAGGGGATAGCTCTCTCA 57.143 50.000 0.92 0.00 0.00 3.27
636 637 3.121929 ACAAGGGGATAGCTCTCTCAA 57.878 47.619 0.92 0.00 0.00 3.02
637 638 3.454858 ACAAGGGGATAGCTCTCTCAAA 58.545 45.455 0.92 0.00 0.00 2.69
638 639 3.846588 ACAAGGGGATAGCTCTCTCAAAA 59.153 43.478 0.92 0.00 0.00 2.44
639 640 4.080638 ACAAGGGGATAGCTCTCTCAAAAG 60.081 45.833 0.92 0.00 0.00 2.27
640 641 4.000928 AGGGGATAGCTCTCTCAAAAGA 57.999 45.455 0.92 0.00 0.00 2.52
641 642 4.366267 AGGGGATAGCTCTCTCAAAAGAA 58.634 43.478 0.92 0.00 0.00 2.52
642 643 4.785376 AGGGGATAGCTCTCTCAAAAGAAA 59.215 41.667 0.92 0.00 0.00 2.52
643 644 5.251700 AGGGGATAGCTCTCTCAAAAGAAAA 59.748 40.000 0.92 0.00 0.00 2.29
644 645 6.069147 AGGGGATAGCTCTCTCAAAAGAAAAT 60.069 38.462 0.92 0.00 0.00 1.82
645 646 6.262049 GGGGATAGCTCTCTCAAAAGAAAATC 59.738 42.308 0.92 0.00 0.00 2.17
646 647 6.825721 GGGATAGCTCTCTCAAAAGAAAATCA 59.174 38.462 0.00 0.00 0.00 2.57
647 648 7.337942 GGGATAGCTCTCTCAAAAGAAAATCAA 59.662 37.037 0.00 0.00 0.00 2.57
648 649 8.180920 GGATAGCTCTCTCAAAAGAAAATCAAC 58.819 37.037 0.00 0.00 0.00 3.18
649 650 6.949352 AGCTCTCTCAAAAGAAAATCAACA 57.051 33.333 0.00 0.00 0.00 3.33
650 651 7.338800 AGCTCTCTCAAAAGAAAATCAACAA 57.661 32.000 0.00 0.00 0.00 2.83
651 652 7.199078 AGCTCTCTCAAAAGAAAATCAACAAC 58.801 34.615 0.00 0.00 0.00 3.32
652 653 7.067981 AGCTCTCTCAAAAGAAAATCAACAACT 59.932 33.333 0.00 0.00 0.00 3.16
653 654 7.378194 GCTCTCTCAAAAGAAAATCAACAACTC 59.622 37.037 0.00 0.00 0.00 3.01
654 655 8.279970 TCTCTCAAAAGAAAATCAACAACTCA 57.720 30.769 0.00 0.00 0.00 3.41
655 656 8.739039 TCTCTCAAAAGAAAATCAACAACTCAA 58.261 29.630 0.00 0.00 0.00 3.02
656 657 9.357652 CTCTCAAAAGAAAATCAACAACTCAAA 57.642 29.630 0.00 0.00 0.00 2.69
657 658 9.703892 TCTCAAAAGAAAATCAACAACTCAAAA 57.296 25.926 0.00 0.00 0.00 2.44
733 741 4.960866 CCACACCAGCAGCAGCCA 62.961 66.667 0.00 0.00 43.56 4.75
734 742 2.908428 CACACCAGCAGCAGCCAA 60.908 61.111 0.00 0.00 43.56 4.52
735 743 2.596631 ACACCAGCAGCAGCCAAG 60.597 61.111 0.00 0.00 43.56 3.61
736 744 2.281970 CACCAGCAGCAGCCAAGA 60.282 61.111 0.00 0.00 43.56 3.02
737 745 2.033757 ACCAGCAGCAGCCAAGAG 59.966 61.111 0.00 0.00 43.56 2.85
738 746 3.441290 CCAGCAGCAGCCAAGAGC 61.441 66.667 0.00 0.00 43.56 4.09
739 747 3.441290 CAGCAGCAGCCAAGAGCC 61.441 66.667 0.00 0.00 45.47 4.70
750 758 3.234730 AAGAGCCGCCGGATAGGG 61.235 66.667 7.68 0.33 41.48 3.53
752 760 3.992317 GAGCCGCCGGATAGGGTC 61.992 72.222 21.49 21.49 45.94 4.46
753 761 4.853142 AGCCGCCGGATAGGGTCA 62.853 66.667 7.68 0.00 41.48 4.02
874 897 3.994000 CCCCCTGATTCCCTCCTC 58.006 66.667 0.00 0.00 0.00 3.71
915 939 3.777522 CCTTCCTTCCTCTCATAGTTGGT 59.222 47.826 0.00 0.00 0.00 3.67
916 940 4.383552 CCTTCCTTCCTCTCATAGTTGGTG 60.384 50.000 0.00 0.00 0.00 4.17
917 941 3.107601 TCCTTCCTCTCATAGTTGGTGG 58.892 50.000 0.00 0.00 0.00 4.61
923 954 1.369091 CTCATAGTTGGTGGTGGCGC 61.369 60.000 0.00 0.00 0.00 6.53
947 978 1.665679 CAGACGAACCATTCCGGATTG 59.334 52.381 17.64 17.64 38.63 2.67
1278 1323 4.271816 CCGCCGGAGATCCTGTCG 62.272 72.222 5.05 0.00 0.00 4.35
1281 1326 1.235281 CGCCGGAGATCCTGTCGATA 61.235 60.000 5.05 0.00 0.00 2.92
1284 1329 0.167033 CGGAGATCCTGTCGATAGCG 59.833 60.000 3.22 0.00 39.35 4.26
1897 1942 2.668632 CCGTGTACACCATGGGCT 59.331 61.111 20.11 2.32 45.20 5.19
2100 2145 1.604755 GAGATACACCTCATCGAGCGT 59.395 52.381 0.00 0.00 33.50 5.07
2136 2181 4.492160 GAGATCACCGACGCCGCA 62.492 66.667 0.00 0.00 0.00 5.69
2139 2184 4.673298 ATCACCGACGCCGCACAA 62.673 61.111 0.00 0.00 0.00 3.33
2346 2391 3.243582 AGCCGGCATGGATCATCA 58.756 55.556 31.54 0.00 42.00 3.07
2384 2429 7.994425 TGGTTGAACATTGTGTGATATACTT 57.006 32.000 0.00 0.00 0.00 2.24
2406 2456 1.755179 AATGCAGGTGGTATGCTGAC 58.245 50.000 0.00 0.00 44.17 3.51
2408 2458 1.815421 GCAGGTGGTATGCTGACGG 60.815 63.158 0.00 0.00 40.59 4.79
2409 2459 1.596934 CAGGTGGTATGCTGACGGT 59.403 57.895 0.00 0.00 0.00 4.83
2410 2460 0.460284 CAGGTGGTATGCTGACGGTC 60.460 60.000 0.00 0.00 0.00 4.79
2464 2514 9.113838 CTTTCCTCTGCATAAGTTATACATGTT 57.886 33.333 2.30 0.00 0.00 2.71
2563 2614 1.396301 GCAGCTTGTGAATCCTTCTCG 59.604 52.381 0.00 0.00 0.00 4.04
2809 2879 3.118298 TCGATGGTCATGGTGTCAATGAT 60.118 43.478 0.00 0.00 0.00 2.45
2841 2911 4.022416 GCAACCTTGATTGTTGGTCATGTA 60.022 41.667 5.41 0.00 42.58 2.29
2842 2912 5.336690 GCAACCTTGATTGTTGGTCATGTAT 60.337 40.000 5.41 0.00 42.58 2.29
2843 2913 6.324819 CAACCTTGATTGTTGGTCATGTATC 58.675 40.000 0.00 0.00 39.48 2.24
2845 2915 4.949238 CCTTGATTGTTGGTCATGTATCCA 59.051 41.667 0.00 0.00 0.00 3.41
2892 2962 6.741992 TTTGCCACTTAGACACAGATTATG 57.258 37.500 0.00 0.00 0.00 1.90
2925 2995 3.311871 GGAGATAGCATTGCTCTGTTGTG 59.688 47.826 15.81 0.00 40.44 3.33
2927 2997 3.688185 AGATAGCATTGCTCTGTTGTGTG 59.312 43.478 15.81 0.00 40.44 3.82
2928 2998 0.313043 AGCATTGCTCTGTTGTGTGC 59.687 50.000 5.03 0.00 30.62 4.57
2929 2999 0.031043 GCATTGCTCTGTTGTGTGCA 59.969 50.000 0.16 0.00 35.11 4.57
2930 3000 1.929038 GCATTGCTCTGTTGTGTGCAG 60.929 52.381 0.16 0.00 37.66 4.41
2931 3001 1.335810 CATTGCTCTGTTGTGTGCAGT 59.664 47.619 0.00 0.00 37.66 4.40
2932 3002 2.323968 TTGCTCTGTTGTGTGCAGTA 57.676 45.000 0.00 0.00 37.66 2.74
2933 3003 1.581934 TGCTCTGTTGTGTGCAGTAC 58.418 50.000 0.00 0.00 35.60 2.73
2934 3004 0.868406 GCTCTGTTGTGTGCAGTACC 59.132 55.000 0.00 0.00 35.60 3.34
3064 3155 4.601406 AATCTGGGTTGGCTTGGTAATA 57.399 40.909 0.00 0.00 0.00 0.98
3094 3188 1.080298 GGTGCAAGTGCTTGGATGC 60.080 57.895 13.07 0.94 42.66 3.91
3108 3202 2.874014 TGGATGCTGTTGGTGATTTGA 58.126 42.857 0.00 0.00 0.00 2.69
3110 3204 3.833650 TGGATGCTGTTGGTGATTTGATT 59.166 39.130 0.00 0.00 0.00 2.57
3112 3206 4.628333 GGATGCTGTTGGTGATTTGATTTG 59.372 41.667 0.00 0.00 0.00 2.32
3113 3207 4.933505 TGCTGTTGGTGATTTGATTTGA 57.066 36.364 0.00 0.00 0.00 2.69
3114 3208 5.471556 TGCTGTTGGTGATTTGATTTGAT 57.528 34.783 0.00 0.00 0.00 2.57
3136 3230 1.072648 TGTACAGGGCTTGTTGGTACC 59.927 52.381 7.82 4.43 41.29 3.34
3138 3232 0.553819 ACAGGGCTTGTTGGTACCAA 59.446 50.000 23.69 23.69 36.31 3.67
3140 3234 0.850784 AGGGCTTGTTGGTACCAAGT 59.149 50.000 27.77 3.99 41.08 3.16
3170 3264 3.559655 TGCGCGCTTAATTTATGTGATCT 59.440 39.130 33.29 0.00 0.00 2.75
3290 3384 1.624336 TTGTAGTCGGCTGTGTACCT 58.376 50.000 0.00 0.00 0.00 3.08
3305 3399 3.947834 GTGTACCTAGCATGCATTTCCTT 59.052 43.478 21.98 0.00 0.00 3.36
3306 3400 4.399303 GTGTACCTAGCATGCATTTCCTTT 59.601 41.667 21.98 0.00 0.00 3.11
3307 3401 5.016173 TGTACCTAGCATGCATTTCCTTTT 58.984 37.500 21.98 0.00 0.00 2.27
3308 3402 4.460948 ACCTAGCATGCATTTCCTTTTG 57.539 40.909 21.98 0.00 0.00 2.44
3309 3403 3.834231 ACCTAGCATGCATTTCCTTTTGT 59.166 39.130 21.98 0.00 0.00 2.83
3310 3404 4.284234 ACCTAGCATGCATTTCCTTTTGTT 59.716 37.500 21.98 0.00 0.00 2.83
3311 3405 4.866486 CCTAGCATGCATTTCCTTTTGTTC 59.134 41.667 21.98 0.00 0.00 3.18
3312 3406 4.612264 AGCATGCATTTCCTTTTGTTCT 57.388 36.364 21.98 0.00 0.00 3.01
3313 3407 4.312443 AGCATGCATTTCCTTTTGTTCTG 58.688 39.130 21.98 0.00 0.00 3.02
3314 3408 4.060205 GCATGCATTTCCTTTTGTTCTGT 58.940 39.130 14.21 0.00 0.00 3.41
3315 3409 4.512571 GCATGCATTTCCTTTTGTTCTGTT 59.487 37.500 14.21 0.00 0.00 3.16
3316 3410 5.333568 GCATGCATTTCCTTTTGTTCTGTTC 60.334 40.000 14.21 0.00 0.00 3.18
3317 3411 5.596836 TGCATTTCCTTTTGTTCTGTTCT 57.403 34.783 0.00 0.00 0.00 3.01
3318 3412 5.591099 TGCATTTCCTTTTGTTCTGTTCTC 58.409 37.500 0.00 0.00 0.00 2.87
3319 3413 5.360714 TGCATTTCCTTTTGTTCTGTTCTCT 59.639 36.000 0.00 0.00 0.00 3.10
3320 3414 5.689068 GCATTTCCTTTTGTTCTGTTCTCTG 59.311 40.000 0.00 0.00 0.00 3.35
3321 3415 4.900635 TTCCTTTTGTTCTGTTCTCTGC 57.099 40.909 0.00 0.00 0.00 4.26
3322 3416 3.884895 TCCTTTTGTTCTGTTCTCTGCA 58.115 40.909 0.00 0.00 0.00 4.41
3323 3417 3.879295 TCCTTTTGTTCTGTTCTCTGCAG 59.121 43.478 7.63 7.63 35.43 4.41
3324 3418 3.629398 CCTTTTGTTCTGTTCTCTGCAGT 59.371 43.478 14.67 0.00 35.60 4.40
3325 3419 4.816385 CCTTTTGTTCTGTTCTCTGCAGTA 59.184 41.667 14.67 0.00 35.60 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.082756 GTGTGCGCAGGAAGTTTCG 60.083 57.895 12.22 0.00 0.00 3.46
2 3 0.593128 ATGTGTGCGCAGGAAGTTTC 59.407 50.000 12.22 0.00 0.00 2.78
5 6 0.608130 TCTATGTGTGCGCAGGAAGT 59.392 50.000 12.22 0.00 0.00 3.01
6 7 1.725641 TTCTATGTGTGCGCAGGAAG 58.274 50.000 12.22 4.44 0.00 3.46
8 9 1.066215 ACATTCTATGTGTGCGCAGGA 60.066 47.619 12.22 0.00 43.01 3.86
9 10 1.328680 GACATTCTATGTGTGCGCAGG 59.671 52.381 12.22 0.00 45.03 4.85
10 11 2.001872 TGACATTCTATGTGTGCGCAG 58.998 47.619 12.22 0.00 45.03 5.18
12 13 2.789092 GCTTGACATTCTATGTGTGCGC 60.789 50.000 0.00 0.00 45.03 6.09
13 14 2.674852 AGCTTGACATTCTATGTGTGCG 59.325 45.455 0.00 0.00 45.03 5.34
15 16 5.220284 CGTACAGCTTGACATTCTATGTGTG 60.220 44.000 0.00 0.00 45.03 3.82
16 17 4.864806 CGTACAGCTTGACATTCTATGTGT 59.135 41.667 0.00 0.00 45.03 3.72
17 18 4.259970 GCGTACAGCTTGACATTCTATGTG 60.260 45.833 0.00 0.00 42.94 3.21
18 19 3.865745 GCGTACAGCTTGACATTCTATGT 59.134 43.478 0.00 0.00 44.53 2.29
19 20 3.060940 CGCGTACAGCTTGACATTCTATG 60.061 47.826 0.00 0.00 45.59 2.23
20 21 3.116300 CGCGTACAGCTTGACATTCTAT 58.884 45.455 0.00 0.00 45.59 1.98
23 24 1.068474 ACGCGTACAGCTTGACATTC 58.932 50.000 11.67 0.00 45.59 2.67
24 25 0.790207 CACGCGTACAGCTTGACATT 59.210 50.000 13.44 0.00 46.71 2.71
25 26 2.445274 CACGCGTACAGCTTGACAT 58.555 52.632 13.44 0.00 46.71 3.06
26 27 3.930838 CACGCGTACAGCTTGACA 58.069 55.556 13.44 0.00 46.71 3.58
29 30 0.663269 TGTCTCACGCGTACAGCTTG 60.663 55.000 13.44 0.00 45.33 4.01
30 31 0.243907 ATGTCTCACGCGTACAGCTT 59.756 50.000 13.44 0.00 45.59 3.74
31 32 0.243907 AATGTCTCACGCGTACAGCT 59.756 50.000 13.44 1.60 45.59 4.24
32 33 1.068474 AAATGTCTCACGCGTACAGC 58.932 50.000 13.44 8.00 43.95 4.40
33 34 3.788434 AAAAATGTCTCACGCGTACAG 57.212 42.857 13.44 11.59 0.00 2.74
61 62 9.691362 GGAAAACTCATTTCTAAATGCTAACAA 57.309 29.630 10.01 0.00 45.57 2.83
62 63 8.855110 TGGAAAACTCATTTCTAAATGCTAACA 58.145 29.630 10.01 1.91 45.57 2.41
63 64 9.691362 TTGGAAAACTCATTTCTAAATGCTAAC 57.309 29.630 10.01 1.52 43.09 2.34
71 72 6.266786 GGACCCTTTGGAAAACTCATTTCTAA 59.733 38.462 1.47 0.00 45.57 2.10
72 73 5.773176 GGACCCTTTGGAAAACTCATTTCTA 59.227 40.000 1.47 0.00 45.57 2.10
73 74 4.588951 GGACCCTTTGGAAAACTCATTTCT 59.411 41.667 1.47 0.00 45.57 2.52
74 75 4.343814 TGGACCCTTTGGAAAACTCATTTC 59.656 41.667 0.00 0.00 45.55 2.17
75 76 4.294347 TGGACCCTTTGGAAAACTCATTT 58.706 39.130 0.00 0.00 34.81 2.32
76 77 3.922375 TGGACCCTTTGGAAAACTCATT 58.078 40.909 0.00 0.00 34.81 2.57
77 78 3.611025 TGGACCCTTTGGAAAACTCAT 57.389 42.857 0.00 0.00 34.81 2.90
78 79 3.611025 ATGGACCCTTTGGAAAACTCA 57.389 42.857 0.00 0.00 34.81 3.41
79 80 3.895041 TGAATGGACCCTTTGGAAAACTC 59.105 43.478 0.00 0.00 34.81 3.01
80 81 3.922375 TGAATGGACCCTTTGGAAAACT 58.078 40.909 0.00 0.00 34.81 2.66
81 82 4.040339 ACATGAATGGACCCTTTGGAAAAC 59.960 41.667 0.00 0.00 34.81 2.43
82 83 4.230455 ACATGAATGGACCCTTTGGAAAA 58.770 39.130 0.00 0.00 34.81 2.29
83 84 3.855668 ACATGAATGGACCCTTTGGAAA 58.144 40.909 0.00 0.00 34.81 3.13
84 85 3.541242 ACATGAATGGACCCTTTGGAA 57.459 42.857 0.00 0.00 34.81 3.53
85 86 4.879295 ATACATGAATGGACCCTTTGGA 57.121 40.909 0.00 0.00 34.81 3.53
86 87 5.937975 AAATACATGAATGGACCCTTTGG 57.062 39.130 0.00 0.00 37.80 3.28
108 109 1.309950 TGGATGGTCAACGCGAAAAA 58.690 45.000 15.93 0.00 0.00 1.94
109 110 1.309950 TTGGATGGTCAACGCGAAAA 58.690 45.000 15.93 0.00 0.00 2.29
110 111 1.309950 TTTGGATGGTCAACGCGAAA 58.690 45.000 15.93 0.00 0.00 3.46
111 112 1.198867 CATTTGGATGGTCAACGCGAA 59.801 47.619 15.93 0.00 0.00 4.70
112 113 0.801872 CATTTGGATGGTCAACGCGA 59.198 50.000 15.93 0.00 0.00 5.87
113 114 0.521291 ACATTTGGATGGTCAACGCG 59.479 50.000 3.53 3.53 37.60 6.01
114 115 3.376859 TCATACATTTGGATGGTCAACGC 59.623 43.478 3.00 0.00 37.60 4.84
115 116 4.201910 GGTCATACATTTGGATGGTCAACG 60.202 45.833 3.00 0.00 37.60 4.10
116 117 4.201910 CGGTCATACATTTGGATGGTCAAC 60.202 45.833 3.00 0.00 37.60 3.18
117 118 3.944650 CGGTCATACATTTGGATGGTCAA 59.055 43.478 3.00 0.00 37.60 3.18
118 119 3.198853 TCGGTCATACATTTGGATGGTCA 59.801 43.478 3.00 0.00 37.60 4.02
119 120 3.804036 TCGGTCATACATTTGGATGGTC 58.196 45.455 3.00 0.00 37.60 4.02
120 121 3.924114 TCGGTCATACATTTGGATGGT 57.076 42.857 3.00 0.00 37.60 3.55
121 122 6.430925 ACATAATCGGTCATACATTTGGATGG 59.569 38.462 3.00 0.00 37.60 3.51
122 123 7.439157 ACATAATCGGTCATACATTTGGATG 57.561 36.000 0.00 0.00 39.25 3.51
123 124 8.375506 AGTACATAATCGGTCATACATTTGGAT 58.624 33.333 0.00 0.00 0.00 3.41
124 125 7.732025 AGTACATAATCGGTCATACATTTGGA 58.268 34.615 0.00 0.00 0.00 3.53
125 126 7.962964 AGTACATAATCGGTCATACATTTGG 57.037 36.000 0.00 0.00 0.00 3.28
133 134 8.972127 AGCATCTATAAGTACATAATCGGTCAT 58.028 33.333 0.00 0.00 0.00 3.06
134 135 8.349568 AGCATCTATAAGTACATAATCGGTCA 57.650 34.615 0.00 0.00 0.00 4.02
143 144 8.811017 AGCACATCTAAGCATCTATAAGTACAT 58.189 33.333 0.00 0.00 0.00 2.29
144 145 8.183104 AGCACATCTAAGCATCTATAAGTACA 57.817 34.615 0.00 0.00 0.00 2.90
145 146 7.757624 GGAGCACATCTAAGCATCTATAAGTAC 59.242 40.741 0.00 0.00 0.00 2.73
146 147 7.671819 AGGAGCACATCTAAGCATCTATAAGTA 59.328 37.037 0.00 0.00 0.00 2.24
147 148 6.496565 AGGAGCACATCTAAGCATCTATAAGT 59.503 38.462 0.00 0.00 0.00 2.24
148 149 6.934056 AGGAGCACATCTAAGCATCTATAAG 58.066 40.000 0.00 0.00 0.00 1.73
149 150 6.924913 AGGAGCACATCTAAGCATCTATAA 57.075 37.500 0.00 0.00 0.00 0.98
150 151 6.924913 AAGGAGCACATCTAAGCATCTATA 57.075 37.500 0.00 0.00 0.00 1.31
151 152 5.822132 AAGGAGCACATCTAAGCATCTAT 57.178 39.130 0.00 0.00 0.00 1.98
152 153 5.620738 AAAGGAGCACATCTAAGCATCTA 57.379 39.130 0.00 0.00 0.00 1.98
153 154 4.500499 AAAGGAGCACATCTAAGCATCT 57.500 40.909 0.00 0.00 0.00 2.90
154 155 5.573337 AAAAAGGAGCACATCTAAGCATC 57.427 39.130 0.00 0.00 0.00 3.91
267 268 8.341903 CGCATACCATTACACTCATCATTTTTA 58.658 33.333 0.00 0.00 0.00 1.52
268 269 7.195646 CGCATACCATTACACTCATCATTTTT 58.804 34.615 0.00 0.00 0.00 1.94
269 270 6.238731 CCGCATACCATTACACTCATCATTTT 60.239 38.462 0.00 0.00 0.00 1.82
270 271 5.239306 CCGCATACCATTACACTCATCATTT 59.761 40.000 0.00 0.00 0.00 2.32
271 272 4.756642 CCGCATACCATTACACTCATCATT 59.243 41.667 0.00 0.00 0.00 2.57
272 273 4.202357 ACCGCATACCATTACACTCATCAT 60.202 41.667 0.00 0.00 0.00 2.45
273 274 3.133901 ACCGCATACCATTACACTCATCA 59.866 43.478 0.00 0.00 0.00 3.07
274 275 3.728845 ACCGCATACCATTACACTCATC 58.271 45.455 0.00 0.00 0.00 2.92
275 276 3.838244 ACCGCATACCATTACACTCAT 57.162 42.857 0.00 0.00 0.00 2.90
276 277 4.948341 ATACCGCATACCATTACACTCA 57.052 40.909 0.00 0.00 0.00 3.41
277 278 5.054477 ACAATACCGCATACCATTACACTC 58.946 41.667 0.00 0.00 0.00 3.51
278 279 5.031066 ACAATACCGCATACCATTACACT 57.969 39.130 0.00 0.00 0.00 3.55
279 280 6.218019 TCTACAATACCGCATACCATTACAC 58.782 40.000 0.00 0.00 0.00 2.90
280 281 6.408107 TCTACAATACCGCATACCATTACA 57.592 37.500 0.00 0.00 0.00 2.41
281 282 6.872020 ACATCTACAATACCGCATACCATTAC 59.128 38.462 0.00 0.00 0.00 1.89
282 283 6.999950 ACATCTACAATACCGCATACCATTA 58.000 36.000 0.00 0.00 0.00 1.90
283 284 5.865085 ACATCTACAATACCGCATACCATT 58.135 37.500 0.00 0.00 0.00 3.16
284 285 5.483685 ACATCTACAATACCGCATACCAT 57.516 39.130 0.00 0.00 0.00 3.55
285 286 4.948341 ACATCTACAATACCGCATACCA 57.052 40.909 0.00 0.00 0.00 3.25
286 287 5.294356 TGAACATCTACAATACCGCATACC 58.706 41.667 0.00 0.00 0.00 2.73
287 288 8.528917 TTATGAACATCTACAATACCGCATAC 57.471 34.615 0.00 0.00 0.00 2.39
288 289 9.719355 ATTTATGAACATCTACAATACCGCATA 57.281 29.630 0.00 0.00 0.00 3.14
289 290 8.621532 ATTTATGAACATCTACAATACCGCAT 57.378 30.769 0.00 0.00 0.00 4.73
290 291 8.445275 AATTTATGAACATCTACAATACCGCA 57.555 30.769 0.00 0.00 0.00 5.69
291 292 9.730420 AAAATTTATGAACATCTACAATACCGC 57.270 29.630 0.00 0.00 0.00 5.68
378 379 9.581099 CCAAGTATTTCAGTACAAGTTTTGTTT 57.419 29.630 0.00 0.00 42.22 2.83
379 380 8.745590 ACCAAGTATTTCAGTACAAGTTTTGTT 58.254 29.630 0.00 0.00 42.22 2.83
381 382 7.586300 CGACCAAGTATTTCAGTACAAGTTTTG 59.414 37.037 0.00 0.00 0.00 2.44
382 383 7.281549 ACGACCAAGTATTTCAGTACAAGTTTT 59.718 33.333 0.00 0.00 0.00 2.43
383 384 6.764560 ACGACCAAGTATTTCAGTACAAGTTT 59.235 34.615 0.00 0.00 0.00 2.66
384 385 6.202188 CACGACCAAGTATTTCAGTACAAGTT 59.798 38.462 0.00 0.00 0.00 2.66
385 386 5.694910 CACGACCAAGTATTTCAGTACAAGT 59.305 40.000 0.00 0.00 0.00 3.16
386 387 5.694910 ACACGACCAAGTATTTCAGTACAAG 59.305 40.000 0.00 0.00 0.00 3.16
387 388 5.464057 CACACGACCAAGTATTTCAGTACAA 59.536 40.000 0.00 0.00 0.00 2.41
388 389 4.986034 CACACGACCAAGTATTTCAGTACA 59.014 41.667 0.00 0.00 0.00 2.90
389 390 4.143179 GCACACGACCAAGTATTTCAGTAC 60.143 45.833 0.00 0.00 0.00 2.73
390 391 3.991773 GCACACGACCAAGTATTTCAGTA 59.008 43.478 0.00 0.00 0.00 2.74
391 392 2.806244 GCACACGACCAAGTATTTCAGT 59.194 45.455 0.00 0.00 0.00 3.41
392 393 2.159841 CGCACACGACCAAGTATTTCAG 60.160 50.000 0.00 0.00 43.93 3.02
393 394 1.795872 CGCACACGACCAAGTATTTCA 59.204 47.619 0.00 0.00 43.93 2.69
394 395 1.463528 GCGCACACGACCAAGTATTTC 60.464 52.381 0.30 0.00 43.93 2.17
395 396 0.515564 GCGCACACGACCAAGTATTT 59.484 50.000 0.30 0.00 43.93 1.40
396 397 1.623081 CGCGCACACGACCAAGTATT 61.623 55.000 8.75 0.00 43.93 1.89
397 398 2.092291 CGCGCACACGACCAAGTAT 61.092 57.895 8.75 0.00 43.93 2.12
398 399 2.731721 CGCGCACACGACCAAGTA 60.732 61.111 8.75 0.00 43.93 2.24
399 400 4.578898 TCGCGCACACGACCAAGT 62.579 61.111 8.75 0.00 43.93 3.16
400 401 3.767230 CTCGCGCACACGACCAAG 61.767 66.667 8.75 0.00 43.93 3.61
404 405 3.781586 TATTACCCTCGCGCACACGAC 62.782 57.143 8.75 0.00 43.93 4.34
405 406 1.655885 TATTACCCTCGCGCACACGA 61.656 55.000 8.75 0.00 43.93 4.35
406 407 0.596600 ATATTACCCTCGCGCACACG 60.597 55.000 8.75 0.00 44.07 4.49
407 408 0.859232 CATATTACCCTCGCGCACAC 59.141 55.000 8.75 0.00 0.00 3.82
408 409 0.878523 GCATATTACCCTCGCGCACA 60.879 55.000 8.75 0.00 0.00 4.57
409 410 1.860078 GCATATTACCCTCGCGCAC 59.140 57.895 8.75 0.00 0.00 5.34
410 411 1.663388 CGCATATTACCCTCGCGCA 60.663 57.895 8.75 0.00 39.43 6.09
411 412 3.156334 CGCATATTACCCTCGCGC 58.844 61.111 0.00 0.00 39.43 6.86
413 414 1.269998 AGAGACGCATATTACCCTCGC 59.730 52.381 0.00 0.00 0.00 5.03
414 415 2.552743 TCAGAGACGCATATTACCCTCG 59.447 50.000 0.00 0.00 0.00 4.63
415 416 4.461081 AGATCAGAGACGCATATTACCCTC 59.539 45.833 0.00 0.00 0.00 4.30
416 417 4.411927 AGATCAGAGACGCATATTACCCT 58.588 43.478 0.00 0.00 0.00 4.34
417 418 4.792521 AGATCAGAGACGCATATTACCC 57.207 45.455 0.00 0.00 0.00 3.69
418 419 6.857956 ACATAGATCAGAGACGCATATTACC 58.142 40.000 0.00 0.00 0.00 2.85
419 420 8.670135 ACTACATAGATCAGAGACGCATATTAC 58.330 37.037 0.00 0.00 0.00 1.89
420 421 8.794335 ACTACATAGATCAGAGACGCATATTA 57.206 34.615 0.00 0.00 0.00 0.98
421 422 7.695480 ACTACATAGATCAGAGACGCATATT 57.305 36.000 0.00 0.00 0.00 1.28
422 423 7.391833 TGAACTACATAGATCAGAGACGCATAT 59.608 37.037 0.00 0.00 31.34 1.78
423 424 6.710744 TGAACTACATAGATCAGAGACGCATA 59.289 38.462 0.00 0.00 31.34 3.14
424 425 5.532779 TGAACTACATAGATCAGAGACGCAT 59.467 40.000 0.00 0.00 31.34 4.73
425 426 4.881850 TGAACTACATAGATCAGAGACGCA 59.118 41.667 0.00 0.00 31.34 5.24
426 427 5.425577 TGAACTACATAGATCAGAGACGC 57.574 43.478 0.00 0.00 31.34 5.19
427 428 6.303370 CGATGAACTACATAGATCAGAGACG 58.697 44.000 5.30 4.99 38.29 4.18
428 429 6.428465 TCCGATGAACTACATAGATCAGAGAC 59.572 42.308 5.30 0.00 38.29 3.36
429 430 6.534634 TCCGATGAACTACATAGATCAGAGA 58.465 40.000 5.30 0.35 38.29 3.10
430 431 6.622679 GCTCCGATGAACTACATAGATCAGAG 60.623 46.154 5.30 7.09 38.29 3.35
431 432 5.182190 GCTCCGATGAACTACATAGATCAGA 59.818 44.000 5.30 0.00 38.29 3.27
432 433 5.048434 TGCTCCGATGAACTACATAGATCAG 60.048 44.000 5.30 0.00 38.29 2.90
433 434 4.827284 TGCTCCGATGAACTACATAGATCA 59.173 41.667 1.83 1.83 39.56 2.92
434 435 5.378292 TGCTCCGATGAACTACATAGATC 57.622 43.478 0.00 0.00 39.56 2.75
435 436 5.991933 ATGCTCCGATGAACTACATAGAT 57.008 39.130 0.00 0.00 39.56 1.98
436 437 6.894339 TTATGCTCCGATGAACTACATAGA 57.106 37.500 0.00 0.00 39.56 1.98
437 438 7.867909 TCTTTTATGCTCCGATGAACTACATAG 59.132 37.037 0.00 0.00 39.56 2.23
438 439 7.722363 TCTTTTATGCTCCGATGAACTACATA 58.278 34.615 0.00 0.00 39.56 2.29
439 440 6.582636 TCTTTTATGCTCCGATGAACTACAT 58.417 36.000 0.00 0.00 42.47 2.29
440 441 5.972935 TCTTTTATGCTCCGATGAACTACA 58.027 37.500 0.00 0.00 0.00 2.74
441 442 6.903883 TTCTTTTATGCTCCGATGAACTAC 57.096 37.500 0.00 0.00 0.00 2.73
442 443 9.607988 TTATTTCTTTTATGCTCCGATGAACTA 57.392 29.630 0.00 0.00 0.00 2.24
443 444 8.506168 TTATTTCTTTTATGCTCCGATGAACT 57.494 30.769 0.00 0.00 0.00 3.01
444 445 9.567848 TTTTATTTCTTTTATGCTCCGATGAAC 57.432 29.630 0.00 0.00 0.00 3.18
466 467 9.803507 TGGATCGGAGAGAGTATAAGTATTTTA 57.196 33.333 0.00 0.00 43.63 1.52
467 468 8.707796 TGGATCGGAGAGAGTATAAGTATTTT 57.292 34.615 0.00 0.00 43.63 1.82
468 469 8.707796 TTGGATCGGAGAGAGTATAAGTATTT 57.292 34.615 0.00 0.00 43.63 1.40
469 470 8.578151 GTTTGGATCGGAGAGAGTATAAGTATT 58.422 37.037 0.00 0.00 43.63 1.89
470 471 7.945664 AGTTTGGATCGGAGAGAGTATAAGTAT 59.054 37.037 0.00 0.00 43.63 2.12
471 472 7.288560 AGTTTGGATCGGAGAGAGTATAAGTA 58.711 38.462 0.00 0.00 43.63 2.24
472 473 6.130569 AGTTTGGATCGGAGAGAGTATAAGT 58.869 40.000 0.00 0.00 43.63 2.24
473 474 6.642707 AGTTTGGATCGGAGAGAGTATAAG 57.357 41.667 0.00 0.00 43.63 1.73
474 475 8.707796 ATTAGTTTGGATCGGAGAGAGTATAA 57.292 34.615 0.00 0.00 43.63 0.98
475 476 8.577296 CAATTAGTTTGGATCGGAGAGAGTATA 58.423 37.037 0.00 0.00 43.63 1.47
476 477 7.287927 TCAATTAGTTTGGATCGGAGAGAGTAT 59.712 37.037 0.00 0.00 36.36 2.12
477 478 6.605995 TCAATTAGTTTGGATCGGAGAGAGTA 59.394 38.462 0.00 0.00 36.36 2.59
478 479 5.422331 TCAATTAGTTTGGATCGGAGAGAGT 59.578 40.000 0.00 0.00 36.36 3.24
479 480 5.751028 GTCAATTAGTTTGGATCGGAGAGAG 59.249 44.000 0.00 0.00 36.36 3.20
480 481 5.186992 TGTCAATTAGTTTGGATCGGAGAGA 59.813 40.000 0.00 0.00 36.36 3.10
481 482 5.292101 GTGTCAATTAGTTTGGATCGGAGAG 59.708 44.000 0.00 0.00 36.36 3.20
482 483 5.175859 GTGTCAATTAGTTTGGATCGGAGA 58.824 41.667 0.00 0.00 37.06 3.71
483 484 4.935205 TGTGTCAATTAGTTTGGATCGGAG 59.065 41.667 0.00 0.00 35.92 4.63
484 485 4.900684 TGTGTCAATTAGTTTGGATCGGA 58.099 39.130 0.00 0.00 35.92 4.55
485 486 4.935205 TCTGTGTCAATTAGTTTGGATCGG 59.065 41.667 0.00 0.00 35.92 4.18
486 487 5.639506 AGTCTGTGTCAATTAGTTTGGATCG 59.360 40.000 0.00 0.00 35.92 3.69
487 488 6.876257 AGAGTCTGTGTCAATTAGTTTGGATC 59.124 38.462 0.00 0.00 35.92 3.36
488 489 6.773638 AGAGTCTGTGTCAATTAGTTTGGAT 58.226 36.000 0.00 0.00 35.92 3.41
489 490 6.174720 AGAGTCTGTGTCAATTAGTTTGGA 57.825 37.500 0.00 0.00 35.92 3.53
490 491 9.307121 CTATAGAGTCTGTGTCAATTAGTTTGG 57.693 37.037 1.86 0.00 35.92 3.28
491 492 9.862371 ACTATAGAGTCTGTGTCAATTAGTTTG 57.138 33.333 6.78 0.00 36.61 2.93
532 533 8.958119 AACCGACACAACATCTACATAATTAT 57.042 30.769 0.00 0.00 0.00 1.28
533 534 9.872721 TTAACCGACACAACATCTACATAATTA 57.127 29.630 0.00 0.00 0.00 1.40
534 535 8.780846 TTAACCGACACAACATCTACATAATT 57.219 30.769 0.00 0.00 0.00 1.40
535 536 8.958119 ATTAACCGACACAACATCTACATAAT 57.042 30.769 0.00 0.00 0.00 1.28
536 537 8.780846 AATTAACCGACACAACATCTACATAA 57.219 30.769 0.00 0.00 0.00 1.90
537 538 8.661257 CAAATTAACCGACACAACATCTACATA 58.339 33.333 0.00 0.00 0.00 2.29
538 539 7.361713 CCAAATTAACCGACACAACATCTACAT 60.362 37.037 0.00 0.00 0.00 2.29
539 540 6.072948 CCAAATTAACCGACACAACATCTACA 60.073 38.462 0.00 0.00 0.00 2.74
540 541 6.148150 TCCAAATTAACCGACACAACATCTAC 59.852 38.462 0.00 0.00 0.00 2.59
541 542 6.148150 GTCCAAATTAACCGACACAACATCTA 59.852 38.462 0.00 0.00 0.00 1.98
542 543 5.048991 GTCCAAATTAACCGACACAACATCT 60.049 40.000 0.00 0.00 0.00 2.90
543 544 5.151389 GTCCAAATTAACCGACACAACATC 58.849 41.667 0.00 0.00 0.00 3.06
544 545 4.319911 CGTCCAAATTAACCGACACAACAT 60.320 41.667 0.00 0.00 0.00 2.71
545 546 3.002451 CGTCCAAATTAACCGACACAACA 59.998 43.478 0.00 0.00 0.00 3.33
546 547 3.002553 ACGTCCAAATTAACCGACACAAC 59.997 43.478 0.00 0.00 0.00 3.32
547 548 3.204526 ACGTCCAAATTAACCGACACAA 58.795 40.909 0.00 0.00 0.00 3.33
548 549 2.836262 ACGTCCAAATTAACCGACACA 58.164 42.857 0.00 0.00 0.00 3.72
549 550 3.002553 ACAACGTCCAAATTAACCGACAC 59.997 43.478 0.00 0.00 0.00 3.67
550 551 3.204526 ACAACGTCCAAATTAACCGACA 58.795 40.909 0.00 0.00 0.00 4.35
551 552 3.883631 ACAACGTCCAAATTAACCGAC 57.116 42.857 0.00 0.00 0.00 4.79
552 553 5.998454 TTTACAACGTCCAAATTAACCGA 57.002 34.783 0.00 0.00 0.00 4.69
553 554 6.428799 TCTTTTACAACGTCCAAATTAACCG 58.571 36.000 0.00 0.00 0.00 4.44
554 555 6.859508 CCTCTTTTACAACGTCCAAATTAACC 59.140 38.462 0.00 0.00 0.00 2.85
555 556 6.361481 GCCTCTTTTACAACGTCCAAATTAAC 59.639 38.462 0.00 0.00 0.00 2.01
556 557 6.263617 AGCCTCTTTTACAACGTCCAAATTAA 59.736 34.615 0.00 0.00 0.00 1.40
557 558 5.766174 AGCCTCTTTTACAACGTCCAAATTA 59.234 36.000 0.00 0.00 0.00 1.40
558 559 4.583073 AGCCTCTTTTACAACGTCCAAATT 59.417 37.500 0.00 0.00 0.00 1.82
559 560 4.142038 AGCCTCTTTTACAACGTCCAAAT 58.858 39.130 0.00 0.00 0.00 2.32
560 561 3.547746 AGCCTCTTTTACAACGTCCAAA 58.452 40.909 0.00 0.00 0.00 3.28
561 562 3.202829 AGCCTCTTTTACAACGTCCAA 57.797 42.857 0.00 0.00 0.00 3.53
562 563 2.922740 AGCCTCTTTTACAACGTCCA 57.077 45.000 0.00 0.00 0.00 4.02
563 564 3.656559 TGTAGCCTCTTTTACAACGTCC 58.343 45.455 0.00 0.00 0.00 4.79
564 565 4.927425 TGATGTAGCCTCTTTTACAACGTC 59.073 41.667 0.00 0.00 33.85 4.34
565 566 4.890088 TGATGTAGCCTCTTTTACAACGT 58.110 39.130 0.00 0.00 33.85 3.99
566 567 5.580691 TGATGATGTAGCCTCTTTTACAACG 59.419 40.000 0.00 0.00 33.85 4.10
567 568 6.985188 TGATGATGTAGCCTCTTTTACAAC 57.015 37.500 0.00 0.00 33.85 3.32
568 569 8.579850 AATTGATGATGTAGCCTCTTTTACAA 57.420 30.769 0.00 0.00 33.85 2.41
569 570 9.679661 TTAATTGATGATGTAGCCTCTTTTACA 57.320 29.630 0.00 0.00 34.57 2.41
578 579 9.979270 CGATCTTAATTAATTGATGATGTAGCC 57.021 33.333 11.05 0.34 0.00 3.93
583 584 9.533983 CGGTTCGATCTTAATTAATTGATGATG 57.466 33.333 11.05 6.86 0.00 3.07
584 585 8.230486 GCGGTTCGATCTTAATTAATTGATGAT 58.770 33.333 11.05 10.55 0.00 2.45
585 586 7.441157 AGCGGTTCGATCTTAATTAATTGATGA 59.559 33.333 11.05 6.52 0.00 2.92
586 587 7.576236 AGCGGTTCGATCTTAATTAATTGATG 58.424 34.615 11.05 1.44 0.00 3.07
587 588 7.730364 AGCGGTTCGATCTTAATTAATTGAT 57.270 32.000 11.05 5.90 0.00 2.57
588 589 7.406553 CAAGCGGTTCGATCTTAATTAATTGA 58.593 34.615 11.05 1.55 0.00 2.57
589 590 6.632834 CCAAGCGGTTCGATCTTAATTAATTG 59.367 38.462 11.05 0.00 0.00 2.32
590 591 6.540914 TCCAAGCGGTTCGATCTTAATTAATT 59.459 34.615 5.89 5.89 0.00 1.40
591 592 6.053005 TCCAAGCGGTTCGATCTTAATTAAT 58.947 36.000 0.00 0.00 0.00 1.40
592 593 5.421277 TCCAAGCGGTTCGATCTTAATTAA 58.579 37.500 0.00 0.00 0.00 1.40
593 594 5.013568 TCCAAGCGGTTCGATCTTAATTA 57.986 39.130 0.00 0.00 0.00 1.40
594 595 3.869065 TCCAAGCGGTTCGATCTTAATT 58.131 40.909 0.00 0.00 0.00 1.40
595 596 3.536956 TCCAAGCGGTTCGATCTTAAT 57.463 42.857 0.00 0.00 0.00 1.40
596 597 2.997986 GTTCCAAGCGGTTCGATCTTAA 59.002 45.455 0.00 0.00 0.00 1.85
597 598 2.028839 TGTTCCAAGCGGTTCGATCTTA 60.029 45.455 0.00 0.00 0.00 2.10
598 599 1.270625 TGTTCCAAGCGGTTCGATCTT 60.271 47.619 0.00 0.00 0.00 2.40
599 600 0.320374 TGTTCCAAGCGGTTCGATCT 59.680 50.000 0.00 0.00 0.00 2.75
600 601 1.128692 CTTGTTCCAAGCGGTTCGATC 59.871 52.381 0.00 0.00 0.00 3.69
601 602 1.156736 CTTGTTCCAAGCGGTTCGAT 58.843 50.000 0.00 0.00 0.00 3.59
602 603 0.882927 CCTTGTTCCAAGCGGTTCGA 60.883 55.000 0.00 0.00 0.00 3.71
603 604 1.574428 CCTTGTTCCAAGCGGTTCG 59.426 57.895 0.00 0.00 0.00 3.95
604 605 1.524008 CCCCTTGTTCCAAGCGGTTC 61.524 60.000 0.00 0.00 0.00 3.62
605 606 1.530655 CCCCTTGTTCCAAGCGGTT 60.531 57.895 0.00 0.00 0.00 4.44
606 607 1.789576 ATCCCCTTGTTCCAAGCGGT 61.790 55.000 7.37 0.00 0.00 5.68
607 608 0.254747 TATCCCCTTGTTCCAAGCGG 59.745 55.000 1.98 1.98 0.00 5.52
608 609 1.668419 CTATCCCCTTGTTCCAAGCG 58.332 55.000 0.00 0.00 0.00 4.68
609 610 1.064389 AGCTATCCCCTTGTTCCAAGC 60.064 52.381 0.00 0.00 0.00 4.01
610 611 2.507471 AGAGCTATCCCCTTGTTCCAAG 59.493 50.000 0.00 0.00 0.00 3.61
611 612 2.505819 GAGAGCTATCCCCTTGTTCCAA 59.494 50.000 0.00 0.00 0.00 3.53
612 613 2.119495 GAGAGCTATCCCCTTGTTCCA 58.881 52.381 0.00 0.00 0.00 3.53
613 614 2.367241 GAGAGAGCTATCCCCTTGTTCC 59.633 54.545 4.34 0.00 0.00 3.62
614 615 3.034635 TGAGAGAGCTATCCCCTTGTTC 58.965 50.000 4.34 0.00 0.00 3.18
615 616 3.121929 TGAGAGAGCTATCCCCTTGTT 57.878 47.619 4.34 0.00 0.00 2.83
616 617 2.856760 TGAGAGAGCTATCCCCTTGT 57.143 50.000 4.34 0.00 0.00 3.16
617 618 4.163078 TCTTTTGAGAGAGCTATCCCCTTG 59.837 45.833 4.34 0.00 0.00 3.61
618 619 4.366267 TCTTTTGAGAGAGCTATCCCCTT 58.634 43.478 4.34 0.00 0.00 3.95
619 620 4.000928 TCTTTTGAGAGAGCTATCCCCT 57.999 45.455 4.34 0.00 0.00 4.79
620 621 4.762289 TTCTTTTGAGAGAGCTATCCCC 57.238 45.455 4.34 0.00 0.00 4.81
621 622 6.825721 TGATTTTCTTTTGAGAGAGCTATCCC 59.174 38.462 4.34 0.00 0.00 3.85
622 623 7.856145 TGATTTTCTTTTGAGAGAGCTATCC 57.144 36.000 4.34 0.00 0.00 2.59
623 624 8.725148 TGTTGATTTTCTTTTGAGAGAGCTATC 58.275 33.333 0.00 0.00 0.00 2.08
624 625 8.627208 TGTTGATTTTCTTTTGAGAGAGCTAT 57.373 30.769 0.00 0.00 0.00 2.97
625 626 8.345565 GTTGTTGATTTTCTTTTGAGAGAGCTA 58.654 33.333 0.00 0.00 0.00 3.32
626 627 6.949352 TGTTGATTTTCTTTTGAGAGAGCT 57.051 33.333 0.00 0.00 0.00 4.09
627 628 7.199078 AGTTGTTGATTTTCTTTTGAGAGAGC 58.801 34.615 0.00 0.00 0.00 4.09
628 629 8.400947 TGAGTTGTTGATTTTCTTTTGAGAGAG 58.599 33.333 0.00 0.00 0.00 3.20
629 630 8.279970 TGAGTTGTTGATTTTCTTTTGAGAGA 57.720 30.769 0.00 0.00 0.00 3.10
630 631 8.915871 TTGAGTTGTTGATTTTCTTTTGAGAG 57.084 30.769 0.00 0.00 0.00 3.20
631 632 9.703892 TTTTGAGTTGTTGATTTTCTTTTGAGA 57.296 25.926 0.00 0.00 0.00 3.27
733 741 3.234730 CCCTATCCGGCGGCTCTT 61.235 66.667 23.83 8.42 0.00 2.85
734 742 4.541648 ACCCTATCCGGCGGCTCT 62.542 66.667 23.83 10.97 0.00 4.09
735 743 3.992317 GACCCTATCCGGCGGCTC 61.992 72.222 23.83 4.48 0.00 4.70
736 744 4.853142 TGACCCTATCCGGCGGCT 62.853 66.667 23.83 15.71 0.00 5.52
737 745 4.301027 CTGACCCTATCCGGCGGC 62.301 72.222 23.83 5.69 0.00 6.53
738 746 2.520982 TCTGACCCTATCCGGCGG 60.521 66.667 22.51 22.51 0.00 6.13
739 747 3.043419 CTCTGACCCTATCCGGCG 58.957 66.667 0.00 0.00 0.00 6.46
740 748 2.093537 CTGCTCTGACCCTATCCGGC 62.094 65.000 0.00 0.00 0.00 6.13
741 749 0.468214 TCTGCTCTGACCCTATCCGG 60.468 60.000 0.00 0.00 0.00 5.14
742 750 0.671251 GTCTGCTCTGACCCTATCCG 59.329 60.000 0.00 0.00 0.00 4.18
750 758 2.813042 GCTGGCGTCTGCTCTGAC 60.813 66.667 12.02 0.00 42.25 3.51
752 760 2.814341 CTGCTGGCGTCTGCTCTG 60.814 66.667 19.82 6.59 42.25 3.35
753 761 4.756458 GCTGCTGGCGTCTGCTCT 62.756 66.667 19.82 0.00 42.25 4.09
779 787 2.219325 CTGTCTGTCTCCACCTCGGC 62.219 65.000 0.00 0.00 33.14 5.54
780 788 0.609406 TCTGTCTGTCTCCACCTCGG 60.609 60.000 0.00 0.00 0.00 4.63
781 789 0.523966 GTCTGTCTGTCTCCACCTCG 59.476 60.000 0.00 0.00 0.00 4.63
782 790 1.621992 TGTCTGTCTGTCTCCACCTC 58.378 55.000 0.00 0.00 0.00 3.85
861 884 1.492599 GGAAAGGGAGGAGGGAATCAG 59.507 57.143 0.00 0.00 0.00 2.90
862 885 1.596496 GGAAAGGGAGGAGGGAATCA 58.404 55.000 0.00 0.00 0.00 2.57
874 897 1.173913 GTGAACGGAATGGGAAAGGG 58.826 55.000 0.00 0.00 0.00 3.95
917 941 3.345808 TTCGTCTGCTTGCGCCAC 61.346 61.111 4.18 0.00 34.43 5.01
923 954 0.443869 CGGAATGGTTCGTCTGCTTG 59.556 55.000 0.00 0.00 0.00 4.01
962 995 1.669440 GTTGGACTACCGGTCTGCA 59.331 57.895 12.40 6.29 43.97 4.41
964 997 0.903454 AGGGTTGGACTACCGGTCTG 60.903 60.000 12.40 8.39 43.97 3.51
1089 1125 2.512515 GAGTGGATCTGGCCGTGC 60.513 66.667 0.00 0.00 0.00 5.34
1206 1251 2.363018 CAGGGGAGCAGGTCGAGA 60.363 66.667 0.00 0.00 0.00 4.04
1275 1320 1.065928 CTGGGTCCACGCTATCGAC 59.934 63.158 0.00 0.00 39.41 4.20
1278 1323 1.521681 GTGCTGGGTCCACGCTATC 60.522 63.158 10.91 2.15 0.00 2.08
1897 1942 2.649034 GGTGACGAAGAGCACGGA 59.351 61.111 0.00 0.00 37.26 4.69
2100 2145 4.393155 ATGAGCTGCCGCGACCAA 62.393 61.111 8.23 0.00 42.32 3.67
2139 2184 0.121197 TCTCCTTGTCCAGGGGGAAT 59.879 55.000 0.00 0.00 44.86 3.01
2330 2375 1.592400 CCATGATGATCCATGCCGGC 61.592 60.000 22.73 22.73 41.83 6.13
2346 2391 1.693062 TCAACCAAACAGCATTGCCAT 59.307 42.857 4.70 0.00 0.00 4.40
2384 2429 3.694072 GTCAGCATACCACCTGCATTTTA 59.306 43.478 0.00 0.00 42.15 1.52
2415 2465 1.017177 CCTCGATTTCAACCGGCGAA 61.017 55.000 9.30 1.05 0.00 4.70
2464 2514 1.202687 CCGGCCTCTATGCATCAAGAA 60.203 52.381 0.19 0.00 0.00 2.52
2563 2614 0.035056 ACCAAGCACTGCCCAGATAC 60.035 55.000 1.69 0.00 0.00 2.24
2737 2800 1.043816 ACTGGACCTGGATCGCATAG 58.956 55.000 0.00 0.00 0.00 2.23
2768 2834 1.863454 GACAGAGGATGTTAGCATGCG 59.137 52.381 13.01 0.00 46.28 4.73
2809 2879 3.900601 ACAATCAAGGTTGCCCAAACATA 59.099 39.130 0.00 0.00 40.86 2.29
2841 2911 3.947834 GCTAGGTGCAACAAACTATGGAT 59.052 43.478 3.64 0.00 39.98 3.41
2842 2912 3.343617 GCTAGGTGCAACAAACTATGGA 58.656 45.455 3.64 0.00 39.98 3.41
2843 2913 3.764885 GCTAGGTGCAACAAACTATGG 57.235 47.619 3.64 0.00 39.98 2.74
2892 2962 4.888326 ATGCTATCTCCATTCTCCACTC 57.112 45.455 0.00 0.00 0.00 3.51
2925 2995 4.219033 CAAAATTTCACTCGGTACTGCAC 58.781 43.478 0.00 0.00 0.00 4.57
2927 2997 3.500680 TCCAAAATTTCACTCGGTACTGC 59.499 43.478 0.00 0.00 0.00 4.40
2928 2998 5.880054 ATCCAAAATTTCACTCGGTACTG 57.120 39.130 0.00 0.00 0.00 2.74
2929 2999 7.495934 CAGATATCCAAAATTTCACTCGGTACT 59.504 37.037 0.00 0.00 0.00 2.73
2930 3000 7.280205 ACAGATATCCAAAATTTCACTCGGTAC 59.720 37.037 0.00 0.00 0.00 3.34
2931 3001 7.335627 ACAGATATCCAAAATTTCACTCGGTA 58.664 34.615 0.00 0.00 0.00 4.02
2932 3002 6.180472 ACAGATATCCAAAATTTCACTCGGT 58.820 36.000 0.00 0.00 0.00 4.69
2933 3003 6.683974 ACAGATATCCAAAATTTCACTCGG 57.316 37.500 0.00 0.00 0.00 4.63
3094 3188 6.684686 ACAGATCAAATCAAATCACCAACAG 58.315 36.000 0.00 0.00 0.00 3.16
3108 3202 4.307032 ACAAGCCCTGTACAGATCAAAT 57.693 40.909 24.68 2.76 36.10 2.32
3110 3204 3.411446 CAACAAGCCCTGTACAGATCAA 58.589 45.455 24.68 0.00 37.23 2.57
3112 3206 2.290323 ACCAACAAGCCCTGTACAGATC 60.290 50.000 24.68 14.35 37.23 2.75
3113 3207 1.705186 ACCAACAAGCCCTGTACAGAT 59.295 47.619 24.68 6.91 37.23 2.90
3114 3208 1.136828 ACCAACAAGCCCTGTACAGA 58.863 50.000 24.68 0.00 37.23 3.41
3170 3264 4.504340 GCACCCAACTCTAAACTGAACCTA 60.504 45.833 0.00 0.00 0.00 3.08
3278 3372 1.154205 GCATGCTAGGTACACAGCCG 61.154 60.000 11.37 7.48 36.95 5.52
3290 3384 5.010922 ACAGAACAAAAGGAAATGCATGCTA 59.989 36.000 20.33 5.73 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.