Multiple sequence alignment - TraesCS2A01G573900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G573900 chr2A 100.000 3026 0 0 1 3026 769143925 769146950 0.000000e+00 5589.0
1 TraesCS2A01G573900 chr2A 83.972 861 123 10 1210 2065 769473665 769472815 0.000000e+00 811.0
2 TraesCS2A01G573900 chr2A 80.840 595 112 2 1398 1991 769020871 769021464 1.640000e-127 466.0
3 TraesCS2A01G573900 chr2A 79.798 594 120 0 1398 1991 769004014 769004607 1.670000e-117 433.0
4 TraesCS2A01G573900 chr2A 84.185 411 51 8 996 1396 769020353 769020759 1.320000e-103 387.0
5 TraesCS2A01G573900 chr2A 94.937 237 12 0 2790 3026 421604186 421604422 3.680000e-99 372.0
6 TraesCS2A01G573900 chr2A 82.110 218 33 4 1000 1214 769003109 769003323 6.660000e-42 182.0
7 TraesCS2A01G573900 chr2D 93.125 2109 96 17 97 2199 644015523 644017588 0.000000e+00 3046.0
8 TraesCS2A01G573900 chr2D 79.556 856 159 11 1212 2065 644219972 644219131 5.580000e-167 597.0
9 TraesCS2A01G573900 chr2D 92.167 383 21 4 2243 2625 644017591 644017964 1.600000e-147 532.0
10 TraesCS2A01G573900 chr2D 81.650 594 109 0 1398 1991 643901694 643902287 7.540000e-136 494.0
11 TraesCS2A01G573900 chr2D 79.461 594 122 0 1398 1991 643879102 643879695 3.610000e-114 422.0
12 TraesCS2A01G573900 chr2D 84.352 409 52 7 996 1395 643901087 643901492 1.020000e-104 390.0
13 TraesCS2A01G573900 chr2D 82.151 437 63 9 1634 2065 644185379 644184953 7.980000e-96 361.0
14 TraesCS2A01G573900 chr2D 84.404 218 28 5 1000 1214 643878406 643878620 3.060000e-50 209.0
15 TraesCS2A01G573900 chr2D 74.269 513 104 23 1087 1582 643468531 643468030 1.110000e-44 191.0
16 TraesCS2A01G573900 chr2B 89.964 2222 119 36 26 2200 793036036 793033872 0.000000e+00 2772.0
17 TraesCS2A01G573900 chr2B 83.469 859 129 8 1211 2065 792876972 792877821 0.000000e+00 787.0
18 TraesCS2A01G573900 chr2B 81.906 829 144 3 1210 2035 792763167 792763992 0.000000e+00 695.0
19 TraesCS2A01G573900 chr2B 79.831 590 119 0 1398 1987 793169143 793168554 5.990000e-117 431.0
20 TraesCS2A01G573900 chr2B 82.195 410 59 9 996 1395 793142146 793141741 1.040000e-89 340.0
21 TraesCS2A01G573900 chr2B 83.857 223 27 7 2300 2517 793033883 793033665 1.420000e-48 204.0
22 TraesCS2A01G573900 chr6A 96.203 237 9 0 2790 3026 5562273 5562509 3.660000e-104 388.0
23 TraesCS2A01G573900 chr6D 95.436 241 8 3 2783 3023 15141328 15141565 6.120000e-102 381.0
24 TraesCS2A01G573900 chr6D 93.991 233 14 0 2790 3022 348100084 348099852 1.330000e-93 353.0
25 TraesCS2A01G573900 chr7A 94.017 234 13 1 2791 3024 563852054 563852286 1.330000e-93 353.0
26 TraesCS2A01G573900 chr7A 93.363 226 15 0 2791 3016 143055030 143055255 4.830000e-88 335.0
27 TraesCS2A01G573900 chr5B 93.220 236 15 1 2790 3024 249576084 249576319 2.230000e-91 346.0
28 TraesCS2A01G573900 chr1A 92.340 235 17 1 2790 3024 552419261 552419494 1.740000e-87 333.0
29 TraesCS2A01G573900 chr6B 90.717 237 22 0 2790 3026 174668382 174668146 1.750000e-82 316.0
30 TraesCS2A01G573900 chr5A 91.228 57 5 0 2228 2284 539502899 539502955 8.990000e-11 78.7
31 TraesCS2A01G573900 chr7D 97.368 38 1 0 306 343 329822504 329822541 7.000000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G573900 chr2A 769143925 769146950 3025 False 5589.0 5589 100.0000 1 3026 1 chr2A.!!$F2 3025
1 TraesCS2A01G573900 chr2A 769472815 769473665 850 True 811.0 811 83.9720 1210 2065 1 chr2A.!!$R1 855
2 TraesCS2A01G573900 chr2A 769020353 769021464 1111 False 426.5 466 82.5125 996 1991 2 chr2A.!!$F4 995
3 TraesCS2A01G573900 chr2A 769003109 769004607 1498 False 307.5 433 80.9540 1000 1991 2 chr2A.!!$F3 991
4 TraesCS2A01G573900 chr2D 644015523 644017964 2441 False 1789.0 3046 92.6460 97 2625 2 chr2D.!!$F3 2528
5 TraesCS2A01G573900 chr2D 644219131 644219972 841 True 597.0 597 79.5560 1212 2065 1 chr2D.!!$R3 853
6 TraesCS2A01G573900 chr2D 643901087 643902287 1200 False 442.0 494 83.0010 996 1991 2 chr2D.!!$F2 995
7 TraesCS2A01G573900 chr2D 643878406 643879695 1289 False 315.5 422 81.9325 1000 1991 2 chr2D.!!$F1 991
8 TraesCS2A01G573900 chr2B 793033665 793036036 2371 True 1488.0 2772 86.9105 26 2517 2 chr2B.!!$R3 2491
9 TraesCS2A01G573900 chr2B 792876972 792877821 849 False 787.0 787 83.4690 1211 2065 1 chr2B.!!$F2 854
10 TraesCS2A01G573900 chr2B 792763167 792763992 825 False 695.0 695 81.9060 1210 2035 1 chr2B.!!$F1 825
11 TraesCS2A01G573900 chr2B 793168554 793169143 589 True 431.0 431 79.8310 1398 1987 1 chr2B.!!$R2 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 1004 0.03438 CCTCCCTCAGACGTAGGTCA 60.034 60.0 17.27 0.0 45.92 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2887 3547 0.03563 AAGCGGCATCTTCTCTTGCT 60.036 50.0 1.45 0.0 38.88 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.426522 GTAGCTTTCAGTGGACATGCA 58.573 47.619 0.00 0.00 0.00 3.96
21 22 2.211250 AGCTTTCAGTGGACATGCAT 57.789 45.000 0.00 0.00 0.00 3.96
22 23 3.354948 AGCTTTCAGTGGACATGCATA 57.645 42.857 0.00 0.00 0.00 3.14
23 24 3.894759 AGCTTTCAGTGGACATGCATAT 58.105 40.909 0.00 0.00 0.00 1.78
24 25 3.630769 AGCTTTCAGTGGACATGCATATG 59.369 43.478 0.00 0.00 40.24 1.78
87 88 4.765813 TTGCTGATGATGATGAAGGAGA 57.234 40.909 0.00 0.00 0.00 3.71
111 118 0.100682 GGTGCGACGATAGAAGAGCA 59.899 55.000 0.00 0.00 41.38 4.26
131 138 6.376581 AGAGCAAATGACTTTTTGGATAGGAG 59.623 38.462 0.00 0.00 37.13 3.69
265 280 4.320953 CGAACTTTCAGCGGCTTTATTTTC 59.679 41.667 0.00 0.10 0.00 2.29
273 288 3.382546 AGCGGCTTTATTTTCTCATGCAT 59.617 39.130 0.00 0.00 0.00 3.96
393 409 7.435488 CGGGATATAGCTTAATTATCTTCGGTG 59.565 40.741 0.00 0.00 0.00 4.94
486 506 0.886563 AACTGGATGCTCTTGCTTGC 59.113 50.000 0.00 0.00 40.48 4.01
493 513 0.390340 TGCTCTTGCTTGCTCCGTAG 60.390 55.000 0.00 0.00 40.48 3.51
499 519 5.773575 CTCTTGCTTGCTCCGTAGATTATA 58.226 41.667 0.00 0.00 0.00 0.98
502 522 3.895656 TGCTTGCTCCGTAGATTATACCT 59.104 43.478 0.00 0.00 0.00 3.08
504 524 4.686554 GCTTGCTCCGTAGATTATACCTTG 59.313 45.833 0.00 0.00 0.00 3.61
535 555 3.283256 CAAATACGTGCTCGATTCATGC 58.717 45.455 16.04 0.00 40.62 4.06
544 564 2.348311 GCTCGATTCATGCAATCTGTCG 60.348 50.000 12.82 0.00 39.15 4.35
612 632 2.878406 ACTAAGTGTGTCCAACATGCAC 59.122 45.455 0.00 0.00 41.97 4.57
678 698 2.438411 AGTTCGAGGAAGAGACACGAT 58.562 47.619 0.00 0.00 33.25 3.73
679 699 2.420722 AGTTCGAGGAAGAGACACGATC 59.579 50.000 0.00 0.00 33.25 3.69
714 739 0.112412 ACCCGGCCAGTTGATTTTCT 59.888 50.000 2.24 0.00 0.00 2.52
764 789 5.782047 TGTTGCATGTCCCTCTTTAATTTG 58.218 37.500 0.00 0.00 0.00 2.32
818 845 8.837389 GTCTTCTCTCTTCTCTAGTTAATCTCC 58.163 40.741 0.00 0.00 0.00 3.71
821 848 6.764085 TCTCTCTTCTCTAGTTAATCTCCACG 59.236 42.308 0.00 0.00 0.00 4.94
833 860 2.347697 TCTCCACGACTTGAACATCG 57.652 50.000 0.00 0.00 43.97 3.84
844 871 2.399916 TGAACATCGCATGTGGATCA 57.600 45.000 6.39 3.58 44.07 2.92
906 939 4.164604 TCGGTGTATAAATAGCAAGGGGTT 59.835 41.667 0.00 0.00 0.00 4.11
909 942 5.472478 GGTGTATAAATAGCAAGGGGTTAGC 59.528 44.000 0.00 0.00 0.00 3.09
912 945 0.465642 AATAGCAAGGGGTTAGCGGC 60.466 55.000 0.00 0.00 0.00 6.53
947 980 3.273654 ACGACCCTCCCTCCCTCA 61.274 66.667 0.00 0.00 0.00 3.86
948 981 2.443016 CGACCCTCCCTCCCTCAG 60.443 72.222 0.00 0.00 0.00 3.35
955 1001 0.466555 CTCCCTCCCTCAGACGTAGG 60.467 65.000 0.00 0.00 0.00 3.18
957 1003 0.752376 CCCTCCCTCAGACGTAGGTC 60.752 65.000 7.49 7.49 43.76 3.85
958 1004 0.034380 CCTCCCTCAGACGTAGGTCA 60.034 60.000 17.27 0.00 45.92 4.02
966 1012 4.190001 CTCAGACGTAGGTCACTAGCTAA 58.810 47.826 17.27 0.00 45.92 3.09
968 1014 3.312973 CAGACGTAGGTCACTAGCTAAGG 59.687 52.174 17.27 0.00 45.92 2.69
969 1015 3.054508 AGACGTAGGTCACTAGCTAAGGT 60.055 47.826 17.27 0.00 45.92 3.50
970 1016 3.277715 ACGTAGGTCACTAGCTAAGGTC 58.722 50.000 0.00 0.00 38.85 3.85
1080 1129 4.382541 TCGGAGGGCCAGCTCTCA 62.383 66.667 20.63 0.00 45.01 3.27
1083 1132 3.791586 GAGGGCCAGCTCTCACCC 61.792 72.222 14.69 2.26 42.84 4.61
1522 2172 1.686428 CGACCCTCATCTCCTCCTTCA 60.686 57.143 0.00 0.00 0.00 3.02
1725 2375 1.212229 GACCCAGAACCTCGACGTC 59.788 63.158 5.18 5.18 0.00 4.34
1731 2381 4.353437 AACCTCGACGTCCGCACC 62.353 66.667 10.58 0.00 38.37 5.01
2028 2678 3.188786 GCCGCCGACATGTGAGAC 61.189 66.667 1.15 0.00 0.00 3.36
2054 2706 6.845302 TGTTCTATCGATGTAACGTAGTGTT 58.155 36.000 8.54 0.00 45.00 3.32
2117 2769 3.455990 AATTGTGCAAGCATGTTGTCA 57.544 38.095 0.00 0.00 0.00 3.58
2155 2810 5.431765 AGAGGTCAAATCGTATGCATCTTT 58.568 37.500 0.19 0.00 0.00 2.52
2185 2840 4.237724 CGTGTGTGTGATCATCAGTAACT 58.762 43.478 0.00 0.00 0.00 2.24
2201 2856 5.242171 TCAGTAACTTCGTAATGTCTGACCA 59.758 40.000 5.17 0.00 0.00 4.02
2202 2857 5.573282 CAGTAACTTCGTAATGTCTGACCAG 59.427 44.000 5.17 0.00 0.00 4.00
2203 2858 3.594603 ACTTCGTAATGTCTGACCAGG 57.405 47.619 5.17 0.00 0.00 4.45
2204 2859 2.271800 CTTCGTAATGTCTGACCAGGC 58.728 52.381 5.17 0.00 0.00 4.85
2205 2860 1.557099 TCGTAATGTCTGACCAGGCT 58.443 50.000 5.17 0.00 33.37 4.58
2206 2861 1.204704 TCGTAATGTCTGACCAGGCTG 59.795 52.381 7.75 7.75 33.37 4.85
2207 2862 1.066858 CGTAATGTCTGACCAGGCTGT 60.067 52.381 14.43 1.17 33.37 4.40
2208 2863 2.350522 GTAATGTCTGACCAGGCTGTG 58.649 52.381 14.43 7.58 33.37 3.66
2209 2864 1.059098 AATGTCTGACCAGGCTGTGA 58.941 50.000 14.43 3.35 33.37 3.58
2210 2865 1.283347 ATGTCTGACCAGGCTGTGAT 58.717 50.000 14.43 0.00 33.37 3.06
2211 2866 0.322648 TGTCTGACCAGGCTGTGATG 59.677 55.000 14.43 0.00 33.37 3.07
2212 2867 1.023513 GTCTGACCAGGCTGTGATGC 61.024 60.000 14.43 0.00 0.00 3.91
2213 2868 1.002990 CTGACCAGGCTGTGATGCA 60.003 57.895 14.43 0.00 34.04 3.96
2214 2869 0.607217 CTGACCAGGCTGTGATGCAA 60.607 55.000 14.43 0.00 34.04 4.08
2215 2870 0.607217 TGACCAGGCTGTGATGCAAG 60.607 55.000 14.43 0.00 34.04 4.01
2216 2871 1.930908 GACCAGGCTGTGATGCAAGC 61.931 60.000 14.43 0.00 34.04 4.01
2217 2872 1.677966 CCAGGCTGTGATGCAAGCT 60.678 57.895 14.43 0.00 34.04 3.74
2218 2873 1.248785 CCAGGCTGTGATGCAAGCTT 61.249 55.000 14.43 0.00 34.04 3.74
2219 2874 0.109272 CAGGCTGTGATGCAAGCTTG 60.109 55.000 22.44 22.44 34.04 4.01
2220 2875 0.538977 AGGCTGTGATGCAAGCTTGT 60.539 50.000 26.55 8.88 34.04 3.16
2221 2876 0.109412 GGCTGTGATGCAAGCTTGTC 60.109 55.000 26.55 17.65 34.04 3.18
2222 2877 0.879765 GCTGTGATGCAAGCTTGTCT 59.120 50.000 26.55 14.67 0.00 3.41
2223 2878 1.401148 GCTGTGATGCAAGCTTGTCTG 60.401 52.381 26.55 15.62 0.00 3.51
2224 2879 2.148768 CTGTGATGCAAGCTTGTCTGA 58.851 47.619 26.55 9.79 0.00 3.27
2225 2880 2.551032 CTGTGATGCAAGCTTGTCTGAA 59.449 45.455 26.55 9.00 0.00 3.02
2226 2881 3.151554 TGTGATGCAAGCTTGTCTGAAT 58.848 40.909 26.55 13.01 0.00 2.57
2227 2882 3.570975 TGTGATGCAAGCTTGTCTGAATT 59.429 39.130 26.55 5.15 0.00 2.17
2228 2883 4.038282 TGTGATGCAAGCTTGTCTGAATTT 59.962 37.500 26.55 4.15 0.00 1.82
2229 2884 4.620184 GTGATGCAAGCTTGTCTGAATTTC 59.380 41.667 26.55 12.38 0.00 2.17
2230 2885 4.521639 TGATGCAAGCTTGTCTGAATTTCT 59.478 37.500 26.55 1.03 0.00 2.52
2231 2886 4.924305 TGCAAGCTTGTCTGAATTTCTT 57.076 36.364 26.55 0.00 0.00 2.52
2232 2887 4.613944 TGCAAGCTTGTCTGAATTTCTTG 58.386 39.130 26.55 0.00 34.32 3.02
2233 2888 4.098349 TGCAAGCTTGTCTGAATTTCTTGT 59.902 37.500 26.55 0.00 33.88 3.16
2234 2889 5.299028 TGCAAGCTTGTCTGAATTTCTTGTA 59.701 36.000 26.55 0.00 33.88 2.41
2235 2890 6.183360 TGCAAGCTTGTCTGAATTTCTTGTAA 60.183 34.615 26.55 0.00 33.88 2.41
2236 2891 6.865205 GCAAGCTTGTCTGAATTTCTTGTAAT 59.135 34.615 26.55 0.00 33.88 1.89
2237 2892 7.383300 GCAAGCTTGTCTGAATTTCTTGTAATT 59.617 33.333 26.55 0.00 33.88 1.40
2238 2893 9.252962 CAAGCTTGTCTGAATTTCTTGTAATTT 57.747 29.630 18.65 0.00 0.00 1.82
2240 2895 9.899226 AGCTTGTCTGAATTTCTTGTAATTTAC 57.101 29.630 0.00 0.00 0.00 2.01
2241 2896 9.677567 GCTTGTCTGAATTTCTTGTAATTTACA 57.322 29.630 5.14 5.14 36.79 2.41
2245 2900 9.827411 GTCTGAATTTCTTGTAATTTACACTCC 57.173 33.333 8.75 0.00 38.63 3.85
2282 2937 1.133025 AGGCATGTAATTTGCGTGCTC 59.867 47.619 24.56 16.98 45.32 4.26
2283 2938 1.133025 GGCATGTAATTTGCGTGCTCT 59.867 47.619 24.56 0.00 45.32 4.09
2284 2939 2.444351 GCATGTAATTTGCGTGCTCTC 58.556 47.619 20.29 0.00 43.37 3.20
2290 2945 2.462456 ATTTGCGTGCTCTCTCTCAA 57.538 45.000 0.00 0.00 0.00 3.02
2292 2947 2.238942 TTGCGTGCTCTCTCTCAAAA 57.761 45.000 0.00 0.00 0.00 2.44
2372 3027 3.003378 TGTCACTCTCAGTGTTACGTCTG 59.997 47.826 0.00 0.00 46.03 3.51
2492 3152 3.004839 TCTCTCACTGTCAGTGTTACTGC 59.995 47.826 27.97 1.25 45.54 4.40
2523 3183 8.988934 CGGTCAATACATACAGCTTAAATACAT 58.011 33.333 0.00 0.00 0.00 2.29
2558 3218 9.709495 AAATGCTTAACAAATGACATACATGTT 57.291 25.926 2.30 14.72 41.95 2.71
2566 3226 3.904800 TGACATACATGTTCGGGATGT 57.095 42.857 2.30 7.34 41.95 3.06
2617 3277 4.703899 TTCTAGTTCGTCGCAGAAAAAC 57.296 40.909 0.00 0.00 39.69 2.43
2634 3294 8.955061 CAGAAAAACGATTTCTGTAATGTCAT 57.045 30.769 26.11 0.00 46.17 3.06
2635 3295 8.843733 CAGAAAAACGATTTCTGTAATGTCATG 58.156 33.333 26.11 9.61 46.17 3.07
2636 3296 8.783093 AGAAAAACGATTTCTGTAATGTCATGA 58.217 29.630 16.36 0.00 37.37 3.07
2637 3297 9.559958 GAAAAACGATTTCTGTAATGTCATGAT 57.440 29.630 0.00 0.00 0.00 2.45
2640 3300 9.599866 AAACGATTTCTGTAATGTCATGATAGA 57.400 29.630 0.00 0.00 0.00 1.98
2641 3301 9.770097 AACGATTTCTGTAATGTCATGATAGAT 57.230 29.630 0.00 0.00 0.00 1.98
2642 3302 9.770097 ACGATTTCTGTAATGTCATGATAGATT 57.230 29.630 0.00 0.87 0.00 2.40
2667 3327 6.494893 TGAATACATTGGAAGTTTCTTCCG 57.505 37.500 19.34 10.65 41.43 4.30
2668 3328 4.965119 ATACATTGGAAGTTTCTTCCGC 57.035 40.909 19.34 2.57 41.43 5.54
2669 3329 2.582052 ACATTGGAAGTTTCTTCCGCA 58.418 42.857 19.34 11.57 41.43 5.69
2670 3330 2.955660 ACATTGGAAGTTTCTTCCGCAA 59.044 40.909 19.34 11.89 41.43 4.85
2671 3331 3.383185 ACATTGGAAGTTTCTTCCGCAAA 59.617 39.130 19.34 11.34 41.43 3.68
2672 3332 4.142049 ACATTGGAAGTTTCTTCCGCAAAA 60.142 37.500 19.34 11.06 41.43 2.44
2673 3333 4.457834 TTGGAAGTTTCTTCCGCAAAAA 57.542 36.364 19.34 8.45 41.43 1.94
2706 3366 7.734538 ACAATTGTGTTTTTACGAGAAACTG 57.265 32.000 11.07 6.32 37.75 3.16
2707 3367 7.531716 ACAATTGTGTTTTTACGAGAAACTGA 58.468 30.769 11.07 2.62 37.75 3.41
2708 3368 7.483691 ACAATTGTGTTTTTACGAGAAACTGAC 59.516 33.333 11.07 5.96 37.75 3.51
2709 3369 6.730960 TTGTGTTTTTACGAGAAACTGACT 57.269 33.333 11.87 0.00 37.75 3.41
2710 3370 6.730960 TGTGTTTTTACGAGAAACTGACTT 57.269 33.333 11.87 0.00 37.75 3.01
2711 3371 7.136289 TGTGTTTTTACGAGAAACTGACTTT 57.864 32.000 11.87 0.00 37.75 2.66
2712 3372 7.586747 TGTGTTTTTACGAGAAACTGACTTTT 58.413 30.769 11.87 0.00 37.75 2.27
2713 3373 8.077386 TGTGTTTTTACGAGAAACTGACTTTTT 58.923 29.630 11.87 0.00 37.75 1.94
2736 3396 4.743493 TCTGCAAAAGAAAAACAGTGTCC 58.257 39.130 0.00 0.00 29.54 4.02
2737 3397 4.462483 TCTGCAAAAGAAAAACAGTGTCCT 59.538 37.500 0.00 0.00 29.54 3.85
2738 3398 4.743493 TGCAAAAGAAAAACAGTGTCCTC 58.257 39.130 0.00 0.00 0.00 3.71
2739 3399 4.462483 TGCAAAAGAAAAACAGTGTCCTCT 59.538 37.500 0.00 0.00 0.00 3.69
2740 3400 5.047377 TGCAAAAGAAAAACAGTGTCCTCTT 60.047 36.000 0.00 2.51 0.00 2.85
2741 3401 5.869344 GCAAAAGAAAAACAGTGTCCTCTTT 59.131 36.000 15.97 15.97 35.26 2.52
2742 3402 6.368791 GCAAAAGAAAAACAGTGTCCTCTTTT 59.631 34.615 22.14 22.14 41.44 2.27
2743 3403 7.544217 GCAAAAGAAAAACAGTGTCCTCTTTTA 59.456 33.333 24.74 0.00 39.74 1.52
2744 3404 9.076596 CAAAAGAAAAACAGTGTCCTCTTTTAG 57.923 33.333 24.74 18.96 39.74 1.85
2745 3405 8.575649 AAAGAAAAACAGTGTCCTCTTTTAGA 57.424 30.769 15.97 0.00 30.88 2.10
2746 3406 8.575649 AAGAAAAACAGTGTCCTCTTTTAGAA 57.424 30.769 0.00 0.00 0.00 2.10
2747 3407 8.753497 AGAAAAACAGTGTCCTCTTTTAGAAT 57.247 30.769 0.00 0.00 0.00 2.40
2748 3408 9.190317 AGAAAAACAGTGTCCTCTTTTAGAATT 57.810 29.630 0.00 0.00 0.00 2.17
2814 3474 3.866883 TTTAACGGGTAACTAGGGACG 57.133 47.619 0.00 0.00 0.00 4.79
2815 3475 2.507407 TAACGGGTAACTAGGGACGT 57.493 50.000 0.00 0.00 35.95 4.34
2816 3476 1.632589 AACGGGTAACTAGGGACGTT 58.367 50.000 0.00 0.00 39.38 3.99
2817 3477 2.507407 ACGGGTAACTAGGGACGTTA 57.493 50.000 0.00 0.00 0.00 3.18
2818 3478 3.018423 ACGGGTAACTAGGGACGTTAT 57.982 47.619 0.00 0.00 0.00 1.89
2819 3479 3.365472 ACGGGTAACTAGGGACGTTATT 58.635 45.455 0.00 0.00 0.00 1.40
2820 3480 4.532834 ACGGGTAACTAGGGACGTTATTA 58.467 43.478 0.00 0.00 0.00 0.98
2821 3481 4.953579 ACGGGTAACTAGGGACGTTATTAA 59.046 41.667 0.00 0.00 0.00 1.40
2822 3482 5.067805 ACGGGTAACTAGGGACGTTATTAAG 59.932 44.000 0.00 0.00 0.00 1.85
2823 3483 5.292765 GGGTAACTAGGGACGTTATTAAGC 58.707 45.833 0.00 0.00 0.00 3.09
2824 3484 5.163416 GGGTAACTAGGGACGTTATTAAGCA 60.163 44.000 0.00 0.00 0.00 3.91
2825 3485 6.463472 GGGTAACTAGGGACGTTATTAAGCAT 60.463 42.308 0.00 0.00 0.00 3.79
2826 3486 6.988580 GGTAACTAGGGACGTTATTAAGCATT 59.011 38.462 0.00 0.00 0.00 3.56
2827 3487 8.143835 GGTAACTAGGGACGTTATTAAGCATTA 58.856 37.037 0.00 0.00 0.00 1.90
2828 3488 9.533253 GTAACTAGGGACGTTATTAAGCATTAA 57.467 33.333 0.00 0.00 45.80 1.40
2844 3504 7.566760 AAGCATTAATCAACATCGGAATACA 57.433 32.000 0.00 0.00 0.00 2.29
2845 3505 7.566760 AGCATTAATCAACATCGGAATACAA 57.433 32.000 0.00 0.00 0.00 2.41
2846 3506 7.995289 AGCATTAATCAACATCGGAATACAAA 58.005 30.769 0.00 0.00 0.00 2.83
2847 3507 8.632679 AGCATTAATCAACATCGGAATACAAAT 58.367 29.630 0.00 0.00 0.00 2.32
2848 3508 9.891828 GCATTAATCAACATCGGAATACAAATA 57.108 29.630 0.00 0.00 0.00 1.40
2853 3513 9.950680 AATCAACATCGGAATACAAATAATGTC 57.049 29.630 0.00 0.00 42.70 3.06
2854 3514 8.731275 TCAACATCGGAATACAAATAATGTCT 57.269 30.769 0.00 0.00 42.70 3.41
2855 3515 8.611757 TCAACATCGGAATACAAATAATGTCTG 58.388 33.333 0.00 0.00 42.70 3.51
2856 3516 6.959361 ACATCGGAATACAAATAATGTCTGC 58.041 36.000 0.00 0.00 42.70 4.26
2857 3517 6.767902 ACATCGGAATACAAATAATGTCTGCT 59.232 34.615 0.00 0.00 42.70 4.24
2858 3518 7.931407 ACATCGGAATACAAATAATGTCTGCTA 59.069 33.333 0.00 0.00 42.70 3.49
2859 3519 7.709269 TCGGAATACAAATAATGTCTGCTAC 57.291 36.000 0.00 0.00 42.70 3.58
2860 3520 7.497595 TCGGAATACAAATAATGTCTGCTACT 58.502 34.615 0.00 0.00 42.70 2.57
2861 3521 7.438160 TCGGAATACAAATAATGTCTGCTACTG 59.562 37.037 0.00 0.00 42.70 2.74
2862 3522 7.224753 CGGAATACAAATAATGTCTGCTACTGT 59.775 37.037 0.00 0.00 42.70 3.55
2863 3523 8.552034 GGAATACAAATAATGTCTGCTACTGTC 58.448 37.037 0.00 0.00 42.70 3.51
2864 3524 8.438676 AATACAAATAATGTCTGCTACTGTCC 57.561 34.615 0.00 0.00 42.70 4.02
2865 3525 5.186198 ACAAATAATGTCTGCTACTGTCCC 58.814 41.667 0.00 0.00 37.96 4.46
2866 3526 5.045578 ACAAATAATGTCTGCTACTGTCCCT 60.046 40.000 0.00 0.00 37.96 4.20
2867 3527 6.156256 ACAAATAATGTCTGCTACTGTCCCTA 59.844 38.462 0.00 0.00 37.96 3.53
2868 3528 6.412362 AATAATGTCTGCTACTGTCCCTAG 57.588 41.667 0.00 0.00 0.00 3.02
2869 3529 1.475403 TGTCTGCTACTGTCCCTAGC 58.525 55.000 0.00 0.00 37.68 3.42
2870 3530 0.747852 GTCTGCTACTGTCCCTAGCC 59.252 60.000 0.00 0.00 36.54 3.93
2871 3531 0.335019 TCTGCTACTGTCCCTAGCCA 59.665 55.000 0.00 0.00 36.54 4.75
2872 3532 1.195115 CTGCTACTGTCCCTAGCCAA 58.805 55.000 0.00 0.00 36.54 4.52
2873 3533 1.555075 CTGCTACTGTCCCTAGCCAAA 59.445 52.381 0.00 0.00 36.54 3.28
2874 3534 2.171448 CTGCTACTGTCCCTAGCCAAAT 59.829 50.000 0.00 0.00 36.54 2.32
2875 3535 2.092968 TGCTACTGTCCCTAGCCAAATG 60.093 50.000 0.00 0.00 36.54 2.32
2876 3536 2.092914 GCTACTGTCCCTAGCCAAATGT 60.093 50.000 0.00 0.00 31.94 2.71
2877 3537 2.496899 ACTGTCCCTAGCCAAATGTG 57.503 50.000 0.00 0.00 0.00 3.21
2886 3546 2.568090 CCAAATGTGGCGACCTGC 59.432 61.111 0.00 0.00 38.35 4.85
2895 3555 2.047844 GCGACCTGCAGCAAGAGA 60.048 61.111 8.66 0.00 45.45 3.10
2896 3556 1.669115 GCGACCTGCAGCAAGAGAA 60.669 57.895 8.66 0.00 45.45 2.87
2897 3557 1.633852 GCGACCTGCAGCAAGAGAAG 61.634 60.000 8.66 0.00 45.45 2.85
2898 3558 0.037882 CGACCTGCAGCAAGAGAAGA 60.038 55.000 8.66 0.00 0.00 2.87
2899 3559 1.405256 CGACCTGCAGCAAGAGAAGAT 60.405 52.381 8.66 0.00 0.00 2.40
2900 3560 2.008329 GACCTGCAGCAAGAGAAGATG 58.992 52.381 8.66 0.00 0.00 2.90
2903 3563 1.720301 GCAGCAAGAGAAGATGCCG 59.280 57.895 0.00 0.00 42.19 5.69
2904 3564 1.720301 CAGCAAGAGAAGATGCCGC 59.280 57.895 0.00 0.00 43.57 6.53
2905 3565 0.743701 CAGCAAGAGAAGATGCCGCT 60.744 55.000 0.00 0.00 43.57 5.52
2906 3566 0.035630 AGCAAGAGAAGATGCCGCTT 60.036 50.000 0.00 0.00 43.57 4.68
2907 3567 0.807496 GCAAGAGAAGATGCCGCTTT 59.193 50.000 0.00 0.00 36.56 3.51
2908 3568 1.202121 GCAAGAGAAGATGCCGCTTTC 60.202 52.381 0.00 0.00 36.56 2.62
2909 3569 1.061711 CAAGAGAAGATGCCGCTTTCG 59.938 52.381 0.00 0.00 0.00 3.46
2910 3570 1.086634 AGAGAAGATGCCGCTTTCGC 61.087 55.000 0.00 0.00 0.00 4.70
2911 3571 2.041366 GAGAAGATGCCGCTTTCGCC 62.041 60.000 0.00 0.00 0.00 5.54
2912 3572 2.359850 AAGATGCCGCTTTCGCCA 60.360 55.556 0.00 0.00 0.00 5.69
2913 3573 2.315038 GAAGATGCCGCTTTCGCCAG 62.315 60.000 0.00 0.00 0.00 4.85
2914 3574 3.127533 GATGCCGCTTTCGCCAGT 61.128 61.111 0.00 0.00 0.00 4.00
2915 3575 3.386867 GATGCCGCTTTCGCCAGTG 62.387 63.158 0.00 0.00 0.00 3.66
2918 3578 3.434319 CCGCTTTCGCCAGTGCAT 61.434 61.111 0.00 0.00 37.32 3.96
2919 3579 2.202388 CGCTTTCGCCAGTGCATG 60.202 61.111 0.00 0.00 37.32 4.06
2927 3587 2.046023 CCAGTGCATGGGCTTCGA 60.046 61.111 7.15 0.00 46.36 3.71
2928 3588 1.675310 CCAGTGCATGGGCTTCGAA 60.675 57.895 0.00 0.00 46.36 3.71
2929 3589 1.243342 CCAGTGCATGGGCTTCGAAA 61.243 55.000 0.00 0.00 46.36 3.46
2930 3590 0.813184 CAGTGCATGGGCTTCGAAAT 59.187 50.000 0.00 0.00 41.91 2.17
2931 3591 1.203052 CAGTGCATGGGCTTCGAAATT 59.797 47.619 0.00 0.00 41.91 1.82
2932 3592 2.423185 CAGTGCATGGGCTTCGAAATTA 59.577 45.455 0.00 0.00 41.91 1.40
2933 3593 3.067180 CAGTGCATGGGCTTCGAAATTAT 59.933 43.478 0.00 0.00 41.91 1.28
2934 3594 3.701040 AGTGCATGGGCTTCGAAATTATT 59.299 39.130 0.00 0.00 41.91 1.40
2935 3595 4.160252 AGTGCATGGGCTTCGAAATTATTT 59.840 37.500 0.00 0.00 41.91 1.40
2936 3596 4.869861 GTGCATGGGCTTCGAAATTATTTT 59.130 37.500 0.00 0.00 41.91 1.82
2937 3597 5.005682 GTGCATGGGCTTCGAAATTATTTTC 59.994 40.000 0.00 0.84 41.91 2.29
2938 3598 5.105392 TGCATGGGCTTCGAAATTATTTTCT 60.105 36.000 0.00 0.00 39.02 2.52
2939 3599 5.460091 GCATGGGCTTCGAAATTATTTTCTC 59.540 40.000 0.00 0.00 37.09 2.87
2940 3600 6.681368 GCATGGGCTTCGAAATTATTTTCTCT 60.681 38.462 0.00 0.00 37.09 3.10
2941 3601 7.468631 GCATGGGCTTCGAAATTATTTTCTCTA 60.469 37.037 0.00 0.00 37.09 2.43
2942 3602 8.571336 CATGGGCTTCGAAATTATTTTCTCTAT 58.429 33.333 0.00 0.00 39.30 1.98
2943 3603 7.930217 TGGGCTTCGAAATTATTTTCTCTATG 58.070 34.615 0.00 0.00 39.30 2.23
2944 3604 7.556275 TGGGCTTCGAAATTATTTTCTCTATGT 59.444 33.333 0.00 0.00 39.30 2.29
2945 3605 8.406297 GGGCTTCGAAATTATTTTCTCTATGTT 58.594 33.333 0.00 0.00 39.30 2.71
2946 3606 9.439537 GGCTTCGAAATTATTTTCTCTATGTTC 57.560 33.333 0.00 0.00 39.30 3.18
2947 3607 9.988350 GCTTCGAAATTATTTTCTCTATGTTCA 57.012 29.630 0.00 0.00 39.30 3.18
2966 3626 5.913137 TTCAAACTTGAACTTGACATGGT 57.087 34.783 0.00 0.00 41.88 3.55
2967 3627 5.247507 TCAAACTTGAACTTGACATGGTG 57.752 39.130 0.00 0.00 33.55 4.17
2968 3628 4.097741 TCAAACTTGAACTTGACATGGTGG 59.902 41.667 0.00 0.00 33.55 4.61
2969 3629 3.576078 ACTTGAACTTGACATGGTGGA 57.424 42.857 0.00 0.00 0.00 4.02
2970 3630 3.897239 ACTTGAACTTGACATGGTGGAA 58.103 40.909 0.00 0.00 0.00 3.53
2971 3631 4.277476 ACTTGAACTTGACATGGTGGAAA 58.723 39.130 0.00 0.00 0.00 3.13
2972 3632 4.895297 ACTTGAACTTGACATGGTGGAAAT 59.105 37.500 0.00 0.00 0.00 2.17
2973 3633 5.010012 ACTTGAACTTGACATGGTGGAAATC 59.990 40.000 0.00 0.00 0.00 2.17
2974 3634 3.826157 TGAACTTGACATGGTGGAAATCC 59.174 43.478 0.00 0.00 0.00 3.01
2975 3635 2.807676 ACTTGACATGGTGGAAATCCC 58.192 47.619 0.00 0.00 34.29 3.85
2976 3636 2.379907 ACTTGACATGGTGGAAATCCCT 59.620 45.455 0.00 0.00 35.38 4.20
2977 3637 3.181418 ACTTGACATGGTGGAAATCCCTT 60.181 43.478 0.00 0.00 35.38 3.95
2978 3638 3.085952 TGACATGGTGGAAATCCCTTC 57.914 47.619 0.00 0.00 35.38 3.46
2979 3639 2.649312 TGACATGGTGGAAATCCCTTCT 59.351 45.455 0.00 0.00 34.17 2.85
2980 3640 3.282885 GACATGGTGGAAATCCCTTCTC 58.717 50.000 0.00 0.00 34.17 2.87
2981 3641 2.024941 ACATGGTGGAAATCCCTTCTCC 60.025 50.000 0.00 0.00 34.17 3.71
2982 3642 2.059756 TGGTGGAAATCCCTTCTCCT 57.940 50.000 0.00 0.00 34.17 3.69
2983 3643 1.916181 TGGTGGAAATCCCTTCTCCTC 59.084 52.381 0.00 0.00 34.17 3.71
2984 3644 2.200955 GGTGGAAATCCCTTCTCCTCT 58.799 52.381 0.00 0.00 34.17 3.69
2985 3645 2.171659 GGTGGAAATCCCTTCTCCTCTC 59.828 54.545 0.00 0.00 34.17 3.20
2986 3646 3.111484 GTGGAAATCCCTTCTCCTCTCT 58.889 50.000 0.00 0.00 34.17 3.10
2987 3647 3.110705 TGGAAATCCCTTCTCCTCTCTG 58.889 50.000 0.00 0.00 34.17 3.35
2988 3648 3.246130 TGGAAATCCCTTCTCCTCTCTGA 60.246 47.826 0.00 0.00 34.17 3.27
2989 3649 3.973305 GGAAATCCCTTCTCCTCTCTGAT 59.027 47.826 0.00 0.00 34.17 2.90
2990 3650 5.151454 GGAAATCCCTTCTCCTCTCTGATA 58.849 45.833 0.00 0.00 34.17 2.15
2991 3651 5.784906 GGAAATCCCTTCTCCTCTCTGATAT 59.215 44.000 0.00 0.00 34.17 1.63
2992 3652 6.272090 GGAAATCCCTTCTCCTCTCTGATATT 59.728 42.308 0.00 0.00 34.17 1.28
2993 3653 7.202176 GGAAATCCCTTCTCCTCTCTGATATTT 60.202 40.741 0.00 0.00 34.17 1.40
2994 3654 6.933514 ATCCCTTCTCCTCTCTGATATTTC 57.066 41.667 0.00 0.00 0.00 2.17
2995 3655 5.781827 TCCCTTCTCCTCTCTGATATTTCA 58.218 41.667 0.00 0.00 0.00 2.69
2996 3656 6.388814 TCCCTTCTCCTCTCTGATATTTCAT 58.611 40.000 0.00 0.00 0.00 2.57
2997 3657 6.269538 TCCCTTCTCCTCTCTGATATTTCATG 59.730 42.308 0.00 0.00 0.00 3.07
2998 3658 6.043012 CCCTTCTCCTCTCTGATATTTCATGT 59.957 42.308 0.00 0.00 0.00 3.21
2999 3659 7.234371 CCCTTCTCCTCTCTGATATTTCATGTA 59.766 40.741 0.00 0.00 0.00 2.29
3000 3660 8.646004 CCTTCTCCTCTCTGATATTTCATGTAA 58.354 37.037 0.00 0.00 0.00 2.41
3001 3661 9.474920 CTTCTCCTCTCTGATATTTCATGTAAC 57.525 37.037 0.00 0.00 0.00 2.50
3002 3662 8.539117 TCTCCTCTCTGATATTTCATGTAACA 57.461 34.615 0.00 0.00 0.00 2.41
3003 3663 8.417106 TCTCCTCTCTGATATTTCATGTAACAC 58.583 37.037 0.00 0.00 0.00 3.32
3004 3664 7.500992 TCCTCTCTGATATTTCATGTAACACC 58.499 38.462 0.00 0.00 0.00 4.16
3005 3665 6.422100 CCTCTCTGATATTTCATGTAACACCG 59.578 42.308 0.00 0.00 0.00 4.94
3006 3666 7.107639 TCTCTGATATTTCATGTAACACCGA 57.892 36.000 0.00 0.00 0.00 4.69
3007 3667 7.726216 TCTCTGATATTTCATGTAACACCGAT 58.274 34.615 0.00 0.00 0.00 4.18
3008 3668 7.653311 TCTCTGATATTTCATGTAACACCGATG 59.347 37.037 0.00 0.00 0.00 3.84
3009 3669 6.202762 TCTGATATTTCATGTAACACCGATGC 59.797 38.462 0.00 0.00 0.00 3.91
3010 3670 5.819901 TGATATTTCATGTAACACCGATGCA 59.180 36.000 0.00 0.00 0.00 3.96
3011 3671 6.486320 TGATATTTCATGTAACACCGATGCAT 59.514 34.615 0.00 0.00 0.00 3.96
3012 3672 7.659390 TGATATTTCATGTAACACCGATGCATA 59.341 33.333 0.00 0.00 0.00 3.14
3013 3673 5.733226 TTTCATGTAACACCGATGCATAG 57.267 39.130 0.00 0.00 0.00 2.23
3014 3674 4.400529 TCATGTAACACCGATGCATAGT 57.599 40.909 0.00 0.00 0.00 2.12
3015 3675 4.119136 TCATGTAACACCGATGCATAGTG 58.881 43.478 21.85 21.85 37.53 2.74
3016 3676 3.603158 TGTAACACCGATGCATAGTGT 57.397 42.857 22.92 22.92 46.33 3.55
3017 3677 3.258228 TGTAACACCGATGCATAGTGTG 58.742 45.455 26.97 22.94 43.69 3.82
3018 3678 2.472695 AACACCGATGCATAGTGTGT 57.527 45.000 26.97 23.44 43.69 3.72
3019 3679 2.010145 ACACCGATGCATAGTGTGTC 57.990 50.000 26.13 2.99 42.89 3.67
3020 3680 0.923403 CACCGATGCATAGTGTGTCG 59.077 55.000 17.35 8.55 0.00 4.35
3021 3681 0.806102 ACCGATGCATAGTGTGTCGC 60.806 55.000 0.00 0.00 0.00 5.19
3022 3682 1.490693 CCGATGCATAGTGTGTCGCC 61.491 60.000 0.00 0.00 0.00 5.54
3023 3683 1.811217 CGATGCATAGTGTGTCGCCG 61.811 60.000 0.00 0.00 0.00 6.46
3024 3684 0.527600 GATGCATAGTGTGTCGCCGA 60.528 55.000 0.00 0.00 0.00 5.54
3025 3685 0.104855 ATGCATAGTGTGTCGCCGAT 59.895 50.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.426522 TGCATGTCCACTGAAAGCTAC 58.573 47.619 0.00 0.00 37.60 3.58
1 2 2.857186 TGCATGTCCACTGAAAGCTA 57.143 45.000 0.00 0.00 37.60 3.32
2 3 2.211250 ATGCATGTCCACTGAAAGCT 57.789 45.000 0.00 0.00 37.60 3.74
3 4 3.794475 GCATATGCATGTCCACTGAAAGC 60.794 47.826 22.84 0.00 41.59 3.51
4 5 3.961182 GCATATGCATGTCCACTGAAAG 58.039 45.455 22.84 0.00 41.59 2.62
19 20 6.097356 ACTTGTTCTTCTTTGCATGCATATG 58.903 36.000 23.37 14.36 37.36 1.78
20 21 6.152323 AGACTTGTTCTTCTTTGCATGCATAT 59.848 34.615 23.37 0.00 0.00 1.78
21 22 5.474532 AGACTTGTTCTTCTTTGCATGCATA 59.525 36.000 23.37 16.39 0.00 3.14
22 23 4.280174 AGACTTGTTCTTCTTTGCATGCAT 59.720 37.500 23.37 0.36 0.00 3.96
23 24 3.633525 AGACTTGTTCTTCTTTGCATGCA 59.366 39.130 18.46 18.46 0.00 3.96
24 25 4.234530 AGACTTGTTCTTCTTTGCATGC 57.765 40.909 11.82 11.82 0.00 4.06
78 79 0.539051 CGCACCTCCTTCTCCTTCAT 59.461 55.000 0.00 0.00 0.00 2.57
87 88 1.405821 CTTCTATCGTCGCACCTCCTT 59.594 52.381 0.00 0.00 0.00 3.36
111 118 6.830838 CCTAGCTCCTATCCAAAAAGTCATTT 59.169 38.462 0.00 0.00 0.00 2.32
235 250 3.788766 CTGAAAGTTCGCCGCCGG 61.789 66.667 0.00 0.00 34.56 6.13
236 251 4.445545 GCTGAAAGTTCGCCGCCG 62.446 66.667 0.00 0.00 35.30 6.46
237 252 4.445545 CGCTGAAAGTTCGCCGCC 62.446 66.667 0.00 0.00 35.30 6.13
238 253 4.445545 CCGCTGAAAGTTCGCCGC 62.446 66.667 3.47 0.00 35.30 6.53
239 254 4.445545 GCCGCTGAAAGTTCGCCG 62.446 66.667 3.47 0.00 35.30 6.46
265 280 1.860950 GCTACGTACCACATGCATGAG 59.139 52.381 32.75 24.31 0.00 2.90
273 288 2.073056 CATGCAAAGCTACGTACCACA 58.927 47.619 0.00 0.00 0.00 4.17
358 373 7.817418 ATTAAGCTATATCCCGCAAAAGAAA 57.183 32.000 0.00 0.00 0.00 2.52
361 376 9.167311 AGATAATTAAGCTATATCCCGCAAAAG 57.833 33.333 0.00 0.00 0.00 2.27
393 409 3.364964 CGATTGATTAGTTAATGGCGGCC 60.365 47.826 13.32 13.32 0.00 6.13
486 506 4.866508 TGGCAAGGTATAATCTACGGAG 57.133 45.455 0.00 0.00 0.00 4.63
502 522 3.923461 GCACGTATTTGCTAATTTGGCAA 59.077 39.130 15.23 15.23 46.12 4.52
517 537 2.223537 TGCATGAATCGAGCACGTAT 57.776 45.000 2.86 0.00 40.69 3.06
518 538 2.003196 TTGCATGAATCGAGCACGTA 57.997 45.000 2.86 0.00 38.11 3.57
523 543 2.348311 CGACAGATTGCATGAATCGAGC 60.348 50.000 0.00 0.00 44.72 5.03
584 604 9.273016 GCATGTTGGACACACTTAGTATATTAT 57.727 33.333 0.00 0.00 38.61 1.28
587 607 6.538742 GTGCATGTTGGACACACTTAGTATAT 59.461 38.462 0.00 0.00 38.66 0.86
588 608 5.872617 GTGCATGTTGGACACACTTAGTATA 59.127 40.000 0.00 0.00 38.66 1.47
589 609 4.695455 GTGCATGTTGGACACACTTAGTAT 59.305 41.667 0.00 0.00 38.66 2.12
590 610 4.062293 GTGCATGTTGGACACACTTAGTA 58.938 43.478 0.00 0.00 38.66 1.82
591 611 2.878406 GTGCATGTTGGACACACTTAGT 59.122 45.455 0.00 0.00 38.66 2.24
592 612 2.096268 CGTGCATGTTGGACACACTTAG 60.096 50.000 0.00 0.00 38.73 2.18
593 613 1.870402 CGTGCATGTTGGACACACTTA 59.130 47.619 0.00 0.00 38.73 2.24
594 614 0.662619 CGTGCATGTTGGACACACTT 59.337 50.000 0.00 0.00 38.73 3.16
595 615 0.463654 ACGTGCATGTTGGACACACT 60.464 50.000 5.51 0.00 38.73 3.55
596 616 0.041312 GACGTGCATGTTGGACACAC 60.041 55.000 13.92 0.00 38.73 3.82
597 617 0.462759 TGACGTGCATGTTGGACACA 60.463 50.000 13.92 2.20 38.73 3.72
598 618 0.041312 GTGACGTGCATGTTGGACAC 60.041 55.000 13.92 12.48 38.73 3.67
714 739 2.665165 AGTTGCATGGACAAAGGTCAA 58.335 42.857 0.00 0.00 46.17 3.18
749 774 8.056407 AGACTAATTGCAAATTAAAGAGGGAC 57.944 34.615 1.71 0.00 0.00 4.46
751 776 8.286191 AGAGACTAATTGCAAATTAAAGAGGG 57.714 34.615 1.71 0.00 0.00 4.30
764 789 4.267452 CGCAGAAAGAGAGAGACTAATTGC 59.733 45.833 0.00 0.00 0.00 3.56
818 845 1.460743 ACATGCGATGTTCAAGTCGTG 59.539 47.619 0.00 0.00 41.63 4.35
821 848 2.076100 TCCACATGCGATGTTCAAGTC 58.924 47.619 0.00 0.00 42.70 3.01
833 860 1.146637 GCTCGATCTGATCCACATGC 58.853 55.000 11.84 5.84 0.00 4.06
844 871 2.763292 AGCTGGCTGGCTCGATCT 60.763 61.111 2.00 0.00 38.24 2.75
862 889 2.772691 GGCTAGTCACCTCCGACCG 61.773 68.421 0.00 0.00 36.52 4.79
863 890 2.772691 CGGCTAGTCACCTCCGACC 61.773 68.421 0.00 0.00 44.23 4.79
864 891 1.593296 AACGGCTAGTCACCTCCGAC 61.593 60.000 10.65 0.00 44.23 4.79
865 892 1.303888 AACGGCTAGTCACCTCCGA 60.304 57.895 10.65 0.00 44.23 4.55
906 939 1.939974 CTTGCACAAGATAGCCGCTA 58.060 50.000 1.73 1.73 40.79 4.26
909 942 1.723870 GGCTTGCACAAGATAGCCG 59.276 57.895 14.44 0.00 43.24 5.52
912 945 1.129251 CGTGTGGCTTGCACAAGATAG 59.871 52.381 14.44 0.00 40.79 2.08
947 980 3.054508 ACCTTAGCTAGTGACCTACGTCT 60.055 47.826 0.00 0.00 39.94 4.18
948 981 3.277715 ACCTTAGCTAGTGACCTACGTC 58.722 50.000 0.00 0.00 39.66 4.34
955 1001 3.193691 TCTTGCAGACCTTAGCTAGTGAC 59.806 47.826 0.00 0.00 35.57 3.67
957 1003 3.876274 TCTTGCAGACCTTAGCTAGTG 57.124 47.619 0.00 0.00 35.57 2.74
958 1004 3.368948 GCTTCTTGCAGACCTTAGCTAGT 60.369 47.826 0.00 0.00 42.31 2.57
966 1012 2.354604 GCTTCTAGCTTCTTGCAGACCT 60.355 50.000 0.00 0.00 45.94 3.85
993 1039 2.125552 CTGGACGCCATCGCTGAA 60.126 61.111 0.00 0.00 39.84 3.02
1083 1132 4.072088 GTCGCGGCGTGGAAGTTG 62.072 66.667 22.90 0.00 0.00 3.16
1731 2381 4.367023 TTGTCGAAGGCGTCCGGG 62.367 66.667 0.00 0.00 38.98 5.73
2028 2678 7.431376 AACACTACGTTACATCGATAGAACATG 59.569 37.037 17.20 12.60 42.89 3.21
2054 2706 1.000506 GGCTTAACGGTCACTCACTCA 59.999 52.381 0.00 0.00 0.00 3.41
2155 2810 2.135139 GATCACACACACGCTGAGAAA 58.865 47.619 0.00 0.00 0.00 2.52
2185 2840 1.899814 AGCCTGGTCAGACATTACGAA 59.100 47.619 2.17 0.00 0.00 3.85
2201 2856 0.538977 ACAAGCTTGCATCACAGCCT 60.539 50.000 26.27 0.00 0.00 4.58
2202 2857 0.109412 GACAAGCTTGCATCACAGCC 60.109 55.000 26.27 1.17 0.00 4.85
2203 2858 0.879765 AGACAAGCTTGCATCACAGC 59.120 50.000 26.27 0.00 0.00 4.40
2204 2859 2.148768 TCAGACAAGCTTGCATCACAG 58.851 47.619 26.27 11.05 0.00 3.66
2205 2860 2.259266 TCAGACAAGCTTGCATCACA 57.741 45.000 26.27 5.27 0.00 3.58
2206 2861 3.844577 ATTCAGACAAGCTTGCATCAC 57.155 42.857 26.27 12.22 0.00 3.06
2207 2862 4.521639 AGAAATTCAGACAAGCTTGCATCA 59.478 37.500 26.27 7.35 0.00 3.07
2208 2863 5.056894 AGAAATTCAGACAAGCTTGCATC 57.943 39.130 26.27 16.80 0.00 3.91
2209 2864 5.221382 ACAAGAAATTCAGACAAGCTTGCAT 60.221 36.000 26.27 12.22 35.83 3.96
2210 2865 4.098349 ACAAGAAATTCAGACAAGCTTGCA 59.902 37.500 26.27 5.14 35.83 4.08
2211 2866 4.614946 ACAAGAAATTCAGACAAGCTTGC 58.385 39.130 26.27 18.03 35.83 4.01
2212 2867 8.807667 AATTACAAGAAATTCAGACAAGCTTG 57.192 30.769 24.84 24.84 37.75 4.01
2214 2869 9.899226 GTAAATTACAAGAAATTCAGACAAGCT 57.101 29.630 0.00 0.00 0.00 3.74
2215 2870 9.677567 TGTAAATTACAAGAAATTCAGACAAGC 57.322 29.630 2.97 0.00 35.38 4.01
2219 2874 9.827411 GGAGTGTAAATTACAAGAAATTCAGAC 57.173 33.333 7.48 0.00 40.93 3.51
2220 2875 8.717821 CGGAGTGTAAATTACAAGAAATTCAGA 58.282 33.333 7.48 0.00 40.93 3.27
2221 2876 7.481798 GCGGAGTGTAAATTACAAGAAATTCAG 59.518 37.037 7.48 2.36 40.93 3.02
2222 2877 7.302524 GCGGAGTGTAAATTACAAGAAATTCA 58.697 34.615 7.48 0.00 40.93 2.57
2223 2878 6.745907 GGCGGAGTGTAAATTACAAGAAATTC 59.254 38.462 7.48 0.00 40.93 2.17
2224 2879 6.433093 AGGCGGAGTGTAAATTACAAGAAATT 59.567 34.615 7.48 0.00 40.93 1.82
2225 2880 5.944007 AGGCGGAGTGTAAATTACAAGAAAT 59.056 36.000 7.48 0.00 40.93 2.17
2226 2881 5.310451 AGGCGGAGTGTAAATTACAAGAAA 58.690 37.500 7.48 0.00 40.93 2.52
2227 2882 4.901868 AGGCGGAGTGTAAATTACAAGAA 58.098 39.130 7.48 0.00 40.93 2.52
2228 2883 4.546829 AGGCGGAGTGTAAATTACAAGA 57.453 40.909 7.48 0.00 40.93 3.02
2229 2884 4.935808 AGAAGGCGGAGTGTAAATTACAAG 59.064 41.667 7.48 1.79 40.93 3.16
2230 2885 4.901868 AGAAGGCGGAGTGTAAATTACAA 58.098 39.130 7.48 0.00 40.93 2.41
2231 2886 4.546829 AGAAGGCGGAGTGTAAATTACA 57.453 40.909 1.08 1.08 36.08 2.41
2232 2887 8.652810 TTTATAGAAGGCGGAGTGTAAATTAC 57.347 34.615 0.00 0.00 0.00 1.89
2233 2888 8.480501 ACTTTATAGAAGGCGGAGTGTAAATTA 58.519 33.333 0.00 0.00 0.00 1.40
2234 2889 7.336396 ACTTTATAGAAGGCGGAGTGTAAATT 58.664 34.615 0.00 0.00 0.00 1.82
2235 2890 6.885922 ACTTTATAGAAGGCGGAGTGTAAAT 58.114 36.000 0.00 0.00 0.00 1.40
2236 2891 6.290294 ACTTTATAGAAGGCGGAGTGTAAA 57.710 37.500 0.00 0.00 0.00 2.01
2237 2892 5.927281 ACTTTATAGAAGGCGGAGTGTAA 57.073 39.130 0.00 0.00 0.00 2.41
2238 2893 5.927281 AACTTTATAGAAGGCGGAGTGTA 57.073 39.130 0.00 0.00 0.00 2.90
2239 2894 4.820894 AACTTTATAGAAGGCGGAGTGT 57.179 40.909 0.00 0.00 0.00 3.55
2240 2895 5.753921 CCTTAACTTTATAGAAGGCGGAGTG 59.246 44.000 0.00 0.00 32.54 3.51
2241 2896 5.915175 CCTTAACTTTATAGAAGGCGGAGT 58.085 41.667 0.00 0.00 32.54 3.85
2306 2961 0.671781 CTTGAAGCTGACCCAGTCGG 60.672 60.000 0.00 0.00 41.44 4.79
2395 3050 4.640855 AGCACGTGACACCGACGG 62.641 66.667 22.23 13.61 41.21 4.79
2396 3051 2.720561 TACAGCACGTGACACCGACG 62.721 60.000 22.23 0.00 42.62 5.12
2400 3055 1.660607 CATCATACAGCACGTGACACC 59.339 52.381 22.23 0.35 0.00 4.16
2492 3152 4.371786 AGCTGTATGTATTGACCGTCATG 58.628 43.478 1.09 0.00 0.00 3.07
2529 3189 9.793252 ATGTATGTCATTTGTTAAGCATTTCTC 57.207 29.630 0.00 0.00 32.08 2.87
2543 3203 5.192927 ACATCCCGAACATGTATGTCATTT 58.807 37.500 0.00 0.00 40.80 2.32
2558 3218 1.108776 GCCAGTACAGTACATCCCGA 58.891 55.000 13.37 0.00 0.00 5.14
2566 3226 2.237643 TGGTAACGTGCCAGTACAGTA 58.762 47.619 7.90 0.00 42.51 2.74
2641 3301 8.673711 CGGAAGAAACTTCCAATGTATTCATAA 58.326 33.333 24.07 0.00 38.49 1.90
2642 3302 7.201696 GCGGAAGAAACTTCCAATGTATTCATA 60.202 37.037 24.07 0.00 38.49 2.15
2643 3303 6.404734 GCGGAAGAAACTTCCAATGTATTCAT 60.405 38.462 24.07 0.00 38.49 2.57
2644 3304 5.106317 GCGGAAGAAACTTCCAATGTATTCA 60.106 40.000 24.07 0.00 38.49 2.57
2645 3305 5.106317 TGCGGAAGAAACTTCCAATGTATTC 60.106 40.000 24.07 7.98 38.49 1.75
2646 3306 4.764823 TGCGGAAGAAACTTCCAATGTATT 59.235 37.500 24.07 0.00 38.49 1.89
2647 3307 4.331968 TGCGGAAGAAACTTCCAATGTAT 58.668 39.130 24.07 0.00 38.49 2.29
2648 3308 3.745799 TGCGGAAGAAACTTCCAATGTA 58.254 40.909 24.07 9.79 38.49 2.29
2649 3309 2.582052 TGCGGAAGAAACTTCCAATGT 58.418 42.857 24.07 0.00 38.49 2.71
2650 3310 3.641437 TTGCGGAAGAAACTTCCAATG 57.359 42.857 24.07 12.92 38.49 2.82
2651 3311 4.664150 TTTTGCGGAAGAAACTTCCAAT 57.336 36.364 24.07 0.00 38.49 3.16
2652 3312 4.457834 TTTTTGCGGAAGAAACTTCCAA 57.542 36.364 24.07 12.90 38.49 3.53
2682 3342 7.483691 GTCAGTTTCTCGTAAAAACACAATTGT 59.516 33.333 4.92 4.92 38.73 2.71
2683 3343 7.696453 AGTCAGTTTCTCGTAAAAACACAATTG 59.304 33.333 3.24 3.24 38.73 2.32
2684 3344 7.758495 AGTCAGTTTCTCGTAAAAACACAATT 58.242 30.769 10.86 0.00 38.73 2.32
2685 3345 7.316544 AGTCAGTTTCTCGTAAAAACACAAT 57.683 32.000 10.86 0.00 38.73 2.71
2686 3346 6.730960 AGTCAGTTTCTCGTAAAAACACAA 57.269 33.333 10.86 0.00 38.73 3.33
2687 3347 6.730960 AAGTCAGTTTCTCGTAAAAACACA 57.269 33.333 10.86 0.00 38.73 3.72
2688 3348 8.443898 AAAAAGTCAGTTTCTCGTAAAAACAC 57.556 30.769 10.86 3.96 38.73 3.32
2713 3373 5.047377 AGGACACTGTTTTTCTTTTGCAGAA 60.047 36.000 0.00 0.00 39.99 3.02
2714 3374 4.462483 AGGACACTGTTTTTCTTTTGCAGA 59.538 37.500 0.00 0.00 0.00 4.26
2715 3375 4.747810 AGGACACTGTTTTTCTTTTGCAG 58.252 39.130 0.00 0.00 0.00 4.41
2716 3376 4.462483 AGAGGACACTGTTTTTCTTTTGCA 59.538 37.500 0.00 0.00 0.00 4.08
2717 3377 4.998788 AGAGGACACTGTTTTTCTTTTGC 58.001 39.130 0.00 0.00 0.00 3.68
2718 3378 7.889589 AAAAGAGGACACTGTTTTTCTTTTG 57.110 32.000 18.60 0.00 44.83 2.44
2719 3379 9.020731 TCTAAAAGAGGACACTGTTTTTCTTTT 57.979 29.630 20.82 20.82 44.83 2.27
2720 3380 8.575649 TCTAAAAGAGGACACTGTTTTTCTTT 57.424 30.769 7.71 4.54 44.83 2.52
2721 3381 8.575649 TTCTAAAAGAGGACACTGTTTTTCTT 57.424 30.769 7.71 0.00 44.83 2.52
2722 3382 8.753497 ATTCTAAAAGAGGACACTGTTTTTCT 57.247 30.769 7.71 0.00 44.83 2.52
2792 3452 4.039852 ACGTCCCTAGTTACCCGTTAAAAA 59.960 41.667 0.00 0.00 0.00 1.94
2793 3453 3.576550 ACGTCCCTAGTTACCCGTTAAAA 59.423 43.478 0.00 0.00 0.00 1.52
2794 3454 3.161866 ACGTCCCTAGTTACCCGTTAAA 58.838 45.455 0.00 0.00 0.00 1.52
2795 3455 2.802719 ACGTCCCTAGTTACCCGTTAA 58.197 47.619 0.00 0.00 0.00 2.01
2796 3456 2.507407 ACGTCCCTAGTTACCCGTTA 57.493 50.000 0.00 0.00 0.00 3.18
2797 3457 1.632589 AACGTCCCTAGTTACCCGTT 58.367 50.000 0.00 0.00 34.11 4.44
2798 3458 2.507407 TAACGTCCCTAGTTACCCGT 57.493 50.000 0.00 0.00 33.42 5.28
2799 3459 5.514274 TTAATAACGTCCCTAGTTACCCG 57.486 43.478 0.00 0.00 36.96 5.28
2800 3460 5.163416 TGCTTAATAACGTCCCTAGTTACCC 60.163 44.000 0.00 0.00 36.96 3.69
2801 3461 5.906073 TGCTTAATAACGTCCCTAGTTACC 58.094 41.667 0.00 0.00 36.96 2.85
2802 3462 9.533253 TTAATGCTTAATAACGTCCCTAGTTAC 57.467 33.333 0.00 0.00 36.96 2.50
2804 3464 9.269453 GATTAATGCTTAATAACGTCCCTAGTT 57.731 33.333 0.00 0.00 36.04 2.24
2805 3465 8.426489 TGATTAATGCTTAATAACGTCCCTAGT 58.574 33.333 0.00 0.00 36.04 2.57
2806 3466 8.827177 TGATTAATGCTTAATAACGTCCCTAG 57.173 34.615 0.00 0.00 36.04 3.02
2807 3467 9.048446 GTTGATTAATGCTTAATAACGTCCCTA 57.952 33.333 0.00 0.00 36.04 3.53
2808 3468 7.554835 TGTTGATTAATGCTTAATAACGTCCCT 59.445 33.333 0.00 0.00 36.04 4.20
2809 3469 7.699566 TGTTGATTAATGCTTAATAACGTCCC 58.300 34.615 0.00 0.00 36.04 4.46
2810 3470 9.382244 GATGTTGATTAATGCTTAATAACGTCC 57.618 33.333 0.00 0.00 36.04 4.79
2811 3471 9.092322 CGATGTTGATTAATGCTTAATAACGTC 57.908 33.333 0.00 17.29 36.04 4.34
2812 3472 8.067784 CCGATGTTGATTAATGCTTAATAACGT 58.932 33.333 0.00 0.00 36.04 3.99
2813 3473 8.279800 TCCGATGTTGATTAATGCTTAATAACG 58.720 33.333 0.00 0.00 36.04 3.18
2814 3474 9.944663 TTCCGATGTTGATTAATGCTTAATAAC 57.055 29.630 0.00 0.00 36.04 1.89
2818 3478 9.114952 TGTATTCCGATGTTGATTAATGCTTAA 57.885 29.630 0.00 0.00 0.00 1.85
2819 3479 8.669946 TGTATTCCGATGTTGATTAATGCTTA 57.330 30.769 0.00 0.00 0.00 3.09
2820 3480 7.566760 TGTATTCCGATGTTGATTAATGCTT 57.433 32.000 0.00 0.00 0.00 3.91
2821 3481 7.566760 TTGTATTCCGATGTTGATTAATGCT 57.433 32.000 0.00 0.00 0.00 3.79
2822 3482 8.801715 ATTTGTATTCCGATGTTGATTAATGC 57.198 30.769 0.00 0.00 0.00 3.56
2827 3487 9.950680 GACATTATTTGTATTCCGATGTTGATT 57.049 29.630 0.00 0.00 39.18 2.57
2828 3488 9.342308 AGACATTATTTGTATTCCGATGTTGAT 57.658 29.630 0.00 0.00 39.18 2.57
2829 3489 8.611757 CAGACATTATTTGTATTCCGATGTTGA 58.388 33.333 0.00 0.00 39.18 3.18
2830 3490 7.376866 GCAGACATTATTTGTATTCCGATGTTG 59.623 37.037 0.00 0.00 39.18 3.33
2831 3491 7.283127 AGCAGACATTATTTGTATTCCGATGTT 59.717 33.333 0.00 0.00 39.18 2.71
2832 3492 6.767902 AGCAGACATTATTTGTATTCCGATGT 59.232 34.615 0.00 0.00 39.18 3.06
2833 3493 7.194607 AGCAGACATTATTTGTATTCCGATG 57.805 36.000 0.00 0.00 39.18 3.84
2834 3494 8.150945 AGTAGCAGACATTATTTGTATTCCGAT 58.849 33.333 0.00 0.00 39.18 4.18
2835 3495 7.438160 CAGTAGCAGACATTATTTGTATTCCGA 59.562 37.037 0.00 0.00 39.18 4.55
2836 3496 7.224753 ACAGTAGCAGACATTATTTGTATTCCG 59.775 37.037 0.00 0.00 39.18 4.30
2837 3497 8.438676 ACAGTAGCAGACATTATTTGTATTCC 57.561 34.615 0.00 0.00 39.18 3.01
2838 3498 8.552034 GGACAGTAGCAGACATTATTTGTATTC 58.448 37.037 0.00 0.00 39.18 1.75
2839 3499 7.499232 GGGACAGTAGCAGACATTATTTGTATT 59.501 37.037 0.00 0.00 39.18 1.89
2840 3500 6.992715 GGGACAGTAGCAGACATTATTTGTAT 59.007 38.462 0.00 0.00 39.18 2.29
2841 3501 6.156256 AGGGACAGTAGCAGACATTATTTGTA 59.844 38.462 0.00 0.00 39.18 2.41
2842 3502 5.045578 AGGGACAGTAGCAGACATTATTTGT 60.046 40.000 0.00 0.00 42.79 2.83
2843 3503 5.431765 AGGGACAGTAGCAGACATTATTTG 58.568 41.667 0.00 0.00 0.00 2.32
2844 3504 5.700402 AGGGACAGTAGCAGACATTATTT 57.300 39.130 0.00 0.00 0.00 1.40
2845 3505 5.221541 GCTAGGGACAGTAGCAGACATTATT 60.222 44.000 0.00 0.00 42.21 1.40
2846 3506 4.282195 GCTAGGGACAGTAGCAGACATTAT 59.718 45.833 0.00 0.00 42.21 1.28
2847 3507 3.637229 GCTAGGGACAGTAGCAGACATTA 59.363 47.826 0.00 0.00 42.21 1.90
2848 3508 2.432510 GCTAGGGACAGTAGCAGACATT 59.567 50.000 0.00 0.00 42.21 2.71
2849 3509 2.035632 GCTAGGGACAGTAGCAGACAT 58.964 52.381 0.00 0.00 42.21 3.06
2850 3510 1.475403 GCTAGGGACAGTAGCAGACA 58.525 55.000 0.00 0.00 42.21 3.41
2851 3511 0.747852 GGCTAGGGACAGTAGCAGAC 59.252 60.000 4.62 0.00 44.08 3.51
2852 3512 0.335019 TGGCTAGGGACAGTAGCAGA 59.665 55.000 4.62 0.00 44.08 4.26
2853 3513 1.195115 TTGGCTAGGGACAGTAGCAG 58.805 55.000 4.62 0.00 44.08 4.24
2854 3514 1.651737 TTTGGCTAGGGACAGTAGCA 58.348 50.000 4.62 0.00 44.08 3.49
2855 3515 2.092914 ACATTTGGCTAGGGACAGTAGC 60.093 50.000 0.00 0.00 41.96 3.58
2856 3516 3.535561 CACATTTGGCTAGGGACAGTAG 58.464 50.000 0.00 0.00 0.00 2.57
2857 3517 2.238646 CCACATTTGGCTAGGGACAGTA 59.761 50.000 0.00 0.00 35.56 2.74
2858 3518 1.004745 CCACATTTGGCTAGGGACAGT 59.995 52.381 0.00 0.00 35.56 3.55
2859 3519 1.755179 CCACATTTGGCTAGGGACAG 58.245 55.000 0.00 0.00 35.56 3.51
2860 3520 3.976704 CCACATTTGGCTAGGGACA 57.023 52.632 0.00 0.00 35.56 4.02
2870 3530 1.210931 CTGCAGGTCGCCACATTTG 59.789 57.895 5.57 0.00 41.33 2.32
2871 3531 2.629656 GCTGCAGGTCGCCACATTT 61.630 57.895 17.12 0.00 41.33 2.32
2872 3532 3.058160 GCTGCAGGTCGCCACATT 61.058 61.111 17.12 0.00 41.33 2.71
2873 3533 3.848301 TTGCTGCAGGTCGCCACAT 62.848 57.895 17.12 0.00 41.33 3.21
2874 3534 4.560743 TTGCTGCAGGTCGCCACA 62.561 61.111 17.12 0.00 41.33 4.17
2875 3535 3.730761 CTTGCTGCAGGTCGCCAC 61.731 66.667 17.12 0.00 41.33 5.01
2876 3536 3.889134 CTCTTGCTGCAGGTCGCCA 62.889 63.158 17.12 0.71 41.33 5.69
2877 3537 3.123620 CTCTTGCTGCAGGTCGCC 61.124 66.667 17.12 0.00 41.33 5.54
2878 3538 1.633852 CTTCTCTTGCTGCAGGTCGC 61.634 60.000 17.12 1.59 42.89 5.19
2879 3539 0.037882 TCTTCTCTTGCTGCAGGTCG 60.038 55.000 17.12 4.79 0.00 4.79
2880 3540 2.008329 CATCTTCTCTTGCTGCAGGTC 58.992 52.381 17.12 0.00 0.00 3.85
2881 3541 1.949547 GCATCTTCTCTTGCTGCAGGT 60.950 52.381 17.12 0.00 35.95 4.00
2882 3542 0.733729 GCATCTTCTCTTGCTGCAGG 59.266 55.000 17.12 5.27 35.95 4.85
2883 3543 0.733729 GGCATCTTCTCTTGCTGCAG 59.266 55.000 10.11 10.11 38.88 4.41
2884 3544 1.022982 CGGCATCTTCTCTTGCTGCA 61.023 55.000 0.00 0.00 38.31 4.41
2885 3545 1.720301 CGGCATCTTCTCTTGCTGC 59.280 57.895 0.00 0.00 38.31 5.25
2886 3546 0.743701 AGCGGCATCTTCTCTTGCTG 60.744 55.000 1.45 0.00 45.90 4.41
2887 3547 0.035630 AAGCGGCATCTTCTCTTGCT 60.036 50.000 1.45 0.00 38.88 3.91
2888 3548 0.807496 AAAGCGGCATCTTCTCTTGC 59.193 50.000 1.45 0.00 38.14 4.01
2889 3549 1.061711 CGAAAGCGGCATCTTCTCTTG 59.938 52.381 1.45 0.00 0.00 3.02
2890 3550 1.363744 CGAAAGCGGCATCTTCTCTT 58.636 50.000 1.45 0.00 0.00 2.85
2891 3551 3.056628 CGAAAGCGGCATCTTCTCT 57.943 52.632 1.45 0.00 0.00 3.10
2904 3564 2.879907 CCCATGCACTGGCGAAAG 59.120 61.111 9.04 0.00 44.46 2.62
2905 3565 3.372730 GCCCATGCACTGGCGAAA 61.373 61.111 12.17 0.00 44.46 3.46
2910 3570 1.243342 TTTCGAAGCCCATGCACTGG 61.243 55.000 0.00 7.88 45.51 4.00
2911 3571 0.813184 ATTTCGAAGCCCATGCACTG 59.187 50.000 0.00 0.00 41.13 3.66
2912 3572 1.549203 AATTTCGAAGCCCATGCACT 58.451 45.000 0.00 0.00 41.13 4.40
2913 3573 3.715628 ATAATTTCGAAGCCCATGCAC 57.284 42.857 0.00 0.00 41.13 4.57
2914 3574 4.734398 AAATAATTTCGAAGCCCATGCA 57.266 36.364 0.00 0.00 41.13 3.96
2915 3575 5.641777 GAAAATAATTTCGAAGCCCATGC 57.358 39.130 0.00 0.00 35.94 4.06
2944 3604 5.394005 CCACCATGTCAAGTTCAAGTTTGAA 60.394 40.000 3.28 3.28 44.31 2.69
2945 3605 4.097741 CCACCATGTCAAGTTCAAGTTTGA 59.902 41.667 0.00 0.00 34.92 2.69
2946 3606 4.097741 TCCACCATGTCAAGTTCAAGTTTG 59.902 41.667 0.00 0.00 0.00 2.93
2947 3607 4.277476 TCCACCATGTCAAGTTCAAGTTT 58.723 39.130 0.00 0.00 0.00 2.66
2948 3608 3.897239 TCCACCATGTCAAGTTCAAGTT 58.103 40.909 0.00 0.00 0.00 2.66
2949 3609 3.576078 TCCACCATGTCAAGTTCAAGT 57.424 42.857 0.00 0.00 0.00 3.16
2950 3610 4.916983 TTTCCACCATGTCAAGTTCAAG 57.083 40.909 0.00 0.00 0.00 3.02
2951 3611 4.280677 GGATTTCCACCATGTCAAGTTCAA 59.719 41.667 0.00 0.00 35.64 2.69
2952 3612 3.826157 GGATTTCCACCATGTCAAGTTCA 59.174 43.478 0.00 0.00 35.64 3.18
2953 3613 3.193479 GGGATTTCCACCATGTCAAGTTC 59.807 47.826 0.00 0.00 37.91 3.01
2954 3614 3.165071 GGGATTTCCACCATGTCAAGTT 58.835 45.455 0.00 0.00 37.91 2.66
2955 3615 2.379907 AGGGATTTCCACCATGTCAAGT 59.620 45.455 0.00 0.00 38.24 3.16
2956 3616 3.091633 AGGGATTTCCACCATGTCAAG 57.908 47.619 0.00 0.00 38.24 3.02
2957 3617 3.075882 AGAAGGGATTTCCACCATGTCAA 59.924 43.478 0.00 0.00 36.40 3.18
2958 3618 2.649312 AGAAGGGATTTCCACCATGTCA 59.351 45.455 0.00 0.00 36.40 3.58
2959 3619 3.282885 GAGAAGGGATTTCCACCATGTC 58.717 50.000 0.00 0.00 36.40 3.06
2960 3620 2.024941 GGAGAAGGGATTTCCACCATGT 60.025 50.000 0.00 0.00 36.40 3.21
2961 3621 2.243221 AGGAGAAGGGATTTCCACCATG 59.757 50.000 0.00 0.00 36.40 3.66
2962 3622 2.511637 GAGGAGAAGGGATTTCCACCAT 59.488 50.000 0.00 0.00 36.40 3.55
2963 3623 1.916181 GAGGAGAAGGGATTTCCACCA 59.084 52.381 0.00 0.00 36.40 4.17
2964 3624 2.171659 GAGAGGAGAAGGGATTTCCACC 59.828 54.545 0.00 0.00 36.40 4.61
2965 3625 3.111484 AGAGAGGAGAAGGGATTTCCAC 58.889 50.000 0.00 0.00 36.40 4.02
2966 3626 3.110705 CAGAGAGGAGAAGGGATTTCCA 58.889 50.000 0.00 0.00 36.40 3.53
2967 3627 3.379452 TCAGAGAGGAGAAGGGATTTCC 58.621 50.000 0.00 0.00 36.40 3.13
2968 3628 6.933514 ATATCAGAGAGGAGAAGGGATTTC 57.066 41.667 0.00 0.00 35.97 2.17
2969 3629 7.349330 TGAAATATCAGAGAGGAGAAGGGATTT 59.651 37.037 0.00 0.00 0.00 2.17
2970 3630 6.848631 TGAAATATCAGAGAGGAGAAGGGATT 59.151 38.462 0.00 0.00 0.00 3.01
2971 3631 6.388814 TGAAATATCAGAGAGGAGAAGGGAT 58.611 40.000 0.00 0.00 0.00 3.85
2972 3632 5.781827 TGAAATATCAGAGAGGAGAAGGGA 58.218 41.667 0.00 0.00 0.00 4.20
2973 3633 6.043012 ACATGAAATATCAGAGAGGAGAAGGG 59.957 42.308 0.00 0.00 39.39 3.95
2974 3634 7.065120 ACATGAAATATCAGAGAGGAGAAGG 57.935 40.000 0.00 0.00 39.39 3.46
2975 3635 9.474920 GTTACATGAAATATCAGAGAGGAGAAG 57.525 37.037 0.00 0.00 39.39 2.85
2976 3636 8.981659 TGTTACATGAAATATCAGAGAGGAGAA 58.018 33.333 0.00 0.00 39.39 2.87
2977 3637 8.417106 GTGTTACATGAAATATCAGAGAGGAGA 58.583 37.037 0.00 0.00 39.39 3.71
2978 3638 7.655328 GGTGTTACATGAAATATCAGAGAGGAG 59.345 40.741 0.00 0.00 39.39 3.69
2979 3639 7.500992 GGTGTTACATGAAATATCAGAGAGGA 58.499 38.462 0.00 0.00 39.39 3.71
2980 3640 6.422100 CGGTGTTACATGAAATATCAGAGAGG 59.578 42.308 0.00 0.00 39.39 3.69
2981 3641 7.203218 TCGGTGTTACATGAAATATCAGAGAG 58.797 38.462 0.00 0.00 39.39 3.20
2982 3642 7.107639 TCGGTGTTACATGAAATATCAGAGA 57.892 36.000 0.00 0.00 39.39 3.10
2983 3643 7.570140 GCATCGGTGTTACATGAAATATCAGAG 60.570 40.741 0.00 0.00 39.39 3.35
2984 3644 6.202762 GCATCGGTGTTACATGAAATATCAGA 59.797 38.462 0.00 0.00 39.39 3.27
2985 3645 6.018016 TGCATCGGTGTTACATGAAATATCAG 60.018 38.462 0.00 0.00 39.39 2.90
2986 3646 5.819901 TGCATCGGTGTTACATGAAATATCA 59.180 36.000 0.00 0.00 40.57 2.15
2987 3647 6.299023 TGCATCGGTGTTACATGAAATATC 57.701 37.500 0.00 0.00 0.00 1.63
2988 3648 6.882610 ATGCATCGGTGTTACATGAAATAT 57.117 33.333 0.00 0.00 0.00 1.28
2989 3649 6.989759 ACTATGCATCGGTGTTACATGAAATA 59.010 34.615 0.19 0.00 0.00 1.40
2990 3650 5.822519 ACTATGCATCGGTGTTACATGAAAT 59.177 36.000 0.19 0.00 0.00 2.17
2991 3651 5.064579 CACTATGCATCGGTGTTACATGAAA 59.935 40.000 18.76 0.00 0.00 2.69
2992 3652 4.570369 CACTATGCATCGGTGTTACATGAA 59.430 41.667 18.76 0.00 0.00 2.57
2993 3653 4.119136 CACTATGCATCGGTGTTACATGA 58.881 43.478 18.76 0.00 0.00 3.07
2994 3654 3.871006 ACACTATGCATCGGTGTTACATG 59.129 43.478 23.86 6.22 40.68 3.21
2995 3655 3.871006 CACACTATGCATCGGTGTTACAT 59.129 43.478 25.78 9.89 41.45 2.29
2996 3656 3.258228 CACACTATGCATCGGTGTTACA 58.742 45.455 25.78 0.00 41.45 2.41
2997 3657 3.259064 ACACACTATGCATCGGTGTTAC 58.741 45.455 25.78 0.00 41.45 2.50
2998 3658 3.517602 GACACACTATGCATCGGTGTTA 58.482 45.455 25.78 0.00 42.27 2.41
2999 3659 2.346803 GACACACTATGCATCGGTGTT 58.653 47.619 25.78 19.41 42.27 3.32
3000 3660 1.735700 CGACACACTATGCATCGGTGT 60.736 52.381 23.86 23.86 44.65 4.16
3001 3661 0.923403 CGACACACTATGCATCGGTG 59.077 55.000 22.86 22.86 37.05 4.94
3002 3662 0.806102 GCGACACACTATGCATCGGT 60.806 55.000 0.19 0.15 31.24 4.69
3003 3663 1.490693 GGCGACACACTATGCATCGG 61.491 60.000 0.19 0.00 31.24 4.18
3004 3664 1.811217 CGGCGACACACTATGCATCG 61.811 60.000 0.19 0.00 33.00 3.84
3005 3665 0.527600 TCGGCGACACACTATGCATC 60.528 55.000 4.99 0.00 0.00 3.91
3006 3666 0.104855 ATCGGCGACACACTATGCAT 59.895 50.000 13.76 3.79 0.00 3.96
3007 3667 1.515487 ATCGGCGACACACTATGCA 59.485 52.632 13.76 0.00 0.00 3.96
3008 3668 4.420143 ATCGGCGACACACTATGC 57.580 55.556 13.76 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.