Multiple sequence alignment - TraesCS2A01G573600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G573600 chr2A 100.000 3129 0 0 1 3129 769031902 769035030 0.000000e+00 5779.0
1 TraesCS2A01G573600 chr2A 96.272 751 24 4 1 749 58484610 58483862 0.000000e+00 1229.0
2 TraesCS2A01G573600 chr2A 91.946 298 24 0 2483 2780 689530130 689530427 4.830000e-113 418.0
3 TraesCS2A01G573600 chr2A 82.500 80 9 5 2341 2418 16135890 16135966 7.240000e-07 65.8
4 TraesCS2A01G573600 chr2A 95.122 41 1 1 1334 1373 195072278 195072238 2.610000e-06 63.9
5 TraesCS2A01G573600 chr2B 93.977 963 35 10 1393 2348 793129488 793128542 0.000000e+00 1435.0
6 TraesCS2A01G573600 chr2B 96.649 746 24 1 1 745 784536535 784537280 0.000000e+00 1238.0
7 TraesCS2A01G573600 chr2B 96.381 746 26 1 1 745 78069385 78070130 0.000000e+00 1227.0
8 TraesCS2A01G573600 chr2B 89.079 467 39 7 891 1347 793130087 793129623 1.260000e-158 569.0
9 TraesCS2A01G573600 chr2B 84.770 348 45 5 2787 3129 793124168 793123824 2.990000e-90 342.0
10 TraesCS2A01G573600 chr2B 96.040 101 4 0 745 845 793130424 793130324 6.940000e-37 165.0
11 TraesCS2A01G573600 chr2B 94.286 35 2 0 1651 1685 793446509 793446475 2.000000e-03 54.7
12 TraesCS2A01G573600 chr2D 90.471 997 75 14 1500 2485 643924183 643925170 0.000000e+00 1297.0
13 TraesCS2A01G573600 chr2D 87.069 348 36 6 2787 3126 643925174 643925520 4.900000e-103 385.0
14 TraesCS2A01G573600 chr2D 94.286 35 2 0 1651 1685 643468070 643468036 2.000000e-03 54.7
15 TraesCS2A01G573600 chr7A 96.447 760 22 4 1 757 732058205 732058962 0.000000e+00 1249.0
16 TraesCS2A01G573600 chr7A 92.177 294 22 1 2487 2780 720874054 720873762 6.240000e-112 414.0
17 TraesCS2A01G573600 chr1B 96.787 747 22 2 1 745 26840527 26839781 0.000000e+00 1245.0
18 TraesCS2A01G573600 chr1B 96.519 747 24 2 1 745 328145611 328144865 0.000000e+00 1234.0
19 TraesCS2A01G573600 chr1B 97.368 38 1 0 1334 1371 404967859 404967822 7.240000e-07 65.8
20 TraesCS2A01G573600 chr7B 96.026 755 29 1 1 754 635017480 635018234 0.000000e+00 1227.0
21 TraesCS2A01G573600 chr7B 90.879 307 25 3 2476 2780 735824396 735824701 2.900000e-110 409.0
22 TraesCS2A01G573600 chr7B 97.500 40 1 0 1335 1374 612297792 612297831 5.600000e-08 69.4
23 TraesCS2A01G573600 chr6A 96.262 749 25 3 1 748 23491590 23490844 0.000000e+00 1225.0
24 TraesCS2A01G573600 chr6A 93.182 44 3 0 1329 1372 558188784 558188827 7.240000e-07 65.8
25 TraesCS2A01G573600 chr1A 96.247 746 27 1 1 745 29157905 29158650 0.000000e+00 1221.0
26 TraesCS2A01G573600 chr4A 92.517 294 22 0 2488 2781 49841827 49842120 3.730000e-114 422.0
27 TraesCS2A01G573600 chr4A 91.611 298 24 1 2487 2784 683408892 683409188 8.080000e-111 411.0
28 TraesCS2A01G573600 chr4D 92.491 293 22 0 2489 2781 95811404 95811112 1.340000e-113 420.0
29 TraesCS2A01G573600 chr4D 91.611 298 22 2 2487 2783 287542389 287542094 2.900000e-110 409.0
30 TraesCS2A01G573600 chr4D 97.619 42 1 0 1331 1372 391053823 391053782 4.330000e-09 73.1
31 TraesCS2A01G573600 chr3D 91.946 298 24 0 2483 2780 347446372 347446669 4.830000e-113 418.0
32 TraesCS2A01G573600 chr1D 92.203 295 22 1 2490 2783 410600577 410600871 1.740000e-112 416.0
33 TraesCS2A01G573600 chr1D 92.857 42 3 0 1331 1372 490104119 490104160 9.370000e-06 62.1
34 TraesCS2A01G573600 chr3B 95.556 45 2 0 2337 2381 592866813 592866769 4.330000e-09 73.1
35 TraesCS2A01G573600 chr3B 100.000 28 0 0 1655 1682 807976515 807976542 6.000000e-03 52.8
36 TraesCS2A01G573600 chr4B 95.238 42 2 0 1331 1372 100851388 100851429 2.010000e-07 67.6
37 TraesCS2A01G573600 chr4B 93.333 45 3 0 1331 1375 655717322 655717278 2.010000e-07 67.6
38 TraesCS2A01G573600 chr3A 92.857 42 3 0 1331 1372 12057912 12057953 9.370000e-06 62.1
39 TraesCS2A01G573600 chr3A 100.000 28 0 0 1655 1682 730116442 730116415 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G573600 chr2A 769031902 769035030 3128 False 5779 5779 100.000 1 3129 1 chr2A.!!$F3 3128
1 TraesCS2A01G573600 chr2A 58483862 58484610 748 True 1229 1229 96.272 1 749 1 chr2A.!!$R1 748
2 TraesCS2A01G573600 chr2B 784536535 784537280 745 False 1238 1238 96.649 1 745 1 chr2B.!!$F2 744
3 TraesCS2A01G573600 chr2B 78069385 78070130 745 False 1227 1227 96.381 1 745 1 chr2B.!!$F1 744
4 TraesCS2A01G573600 chr2B 793128542 793130424 1882 True 723 1435 93.032 745 2348 3 chr2B.!!$R3 1603
5 TraesCS2A01G573600 chr2D 643924183 643925520 1337 False 841 1297 88.770 1500 3126 2 chr2D.!!$F1 1626
6 TraesCS2A01G573600 chr7A 732058205 732058962 757 False 1249 1249 96.447 1 757 1 chr7A.!!$F1 756
7 TraesCS2A01G573600 chr1B 26839781 26840527 746 True 1245 1245 96.787 1 745 1 chr1B.!!$R1 744
8 TraesCS2A01G573600 chr1B 328144865 328145611 746 True 1234 1234 96.519 1 745 1 chr1B.!!$R2 744
9 TraesCS2A01G573600 chr7B 635017480 635018234 754 False 1227 1227 96.026 1 754 1 chr7B.!!$F2 753
10 TraesCS2A01G573600 chr6A 23490844 23491590 746 True 1225 1225 96.262 1 748 1 chr6A.!!$R1 747
11 TraesCS2A01G573600 chr1A 29157905 29158650 745 False 1221 1221 96.247 1 745 1 chr1A.!!$F1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 545 0.875059 CTTGACTTTTCCCCTGTCGC 59.125 55.0 0.0 0.0 33.81 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2432 2744 0.175989 CTGGACTTAACTCCTCGGCC 59.824 60.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 1.466950 CGATGCCGGTTCTTTGCTTTA 59.533 47.619 1.90 0.00 0.00 1.85
541 545 0.875059 CTTGACTTTTCCCCTGTCGC 59.125 55.000 0.00 0.00 33.81 5.19
616 621 3.637273 GGGTTCGGCCTGTGACCT 61.637 66.667 0.00 0.00 37.43 3.85
652 657 2.095847 CCGAACCGGCGATTTTCGA 61.096 57.895 27.84 0.00 43.83 3.71
658 663 3.087176 GGCGATTTTCGACGTCCC 58.913 61.111 10.58 0.00 43.74 4.46
754 761 1.005289 AGATGCCCTGAGGTCCCAT 59.995 57.895 0.00 0.00 34.57 4.00
845 852 4.101119 GCTTCCCACAGGTATGTATGTACT 59.899 45.833 0.00 0.00 37.65 2.73
846 853 5.601662 CTTCCCACAGGTATGTATGTACTG 58.398 45.833 0.00 0.00 37.65 2.74
847 854 3.386726 TCCCACAGGTATGTATGTACTGC 59.613 47.826 0.00 0.00 37.65 4.40
848 855 3.388024 CCCACAGGTATGTATGTACTGCT 59.612 47.826 0.00 0.00 37.65 4.24
850 857 5.428253 CCACAGGTATGTATGTACTGCTTT 58.572 41.667 0.00 0.00 37.65 3.51
851 858 5.294306 CCACAGGTATGTATGTACTGCTTTG 59.706 44.000 0.00 0.00 37.65 2.77
852 859 4.876107 ACAGGTATGTATGTACTGCTTTGC 59.124 41.667 0.00 0.00 38.09 3.68
854 861 3.247648 GGTATGTATGTACTGCTTTGCCG 59.752 47.826 0.00 0.00 0.00 5.69
855 862 1.732941 TGTATGTACTGCTTTGCCGG 58.267 50.000 0.00 0.00 0.00 6.13
856 863 1.276705 TGTATGTACTGCTTTGCCGGA 59.723 47.619 5.05 0.00 0.00 5.14
860 928 1.810151 TGTACTGCTTTGCCGGATTTC 59.190 47.619 5.05 0.00 0.00 2.17
861 929 1.810151 GTACTGCTTTGCCGGATTTCA 59.190 47.619 5.05 0.00 0.00 2.69
862 930 1.549203 ACTGCTTTGCCGGATTTCAT 58.451 45.000 5.05 0.00 0.00 2.57
867 935 3.055963 TGCTTTGCCGGATTTCATTCATT 60.056 39.130 5.05 0.00 0.00 2.57
869 937 5.108517 GCTTTGCCGGATTTCATTCATTAA 58.891 37.500 5.05 0.00 0.00 1.40
876 944 7.068593 TGCCGGATTTCATTCATTAAGAAGAAT 59.931 33.333 5.05 0.00 40.15 2.40
897 1031 7.688372 AGAATGCAAAGATGAAATGTACTACG 58.312 34.615 0.00 0.00 0.00 3.51
900 1098 7.520119 TGCAAAGATGAAATGTACTACGTAG 57.480 36.000 20.97 20.97 0.00 3.51
904 1102 9.745880 CAAAGATGAAATGTACTACGTAGGTAT 57.254 33.333 25.63 13.72 0.00 2.73
910 1108 7.760794 TGAAATGTACTACGTAGGTATTTGGTG 59.239 37.037 25.63 0.00 0.00 4.17
951 1149 2.260434 GCGTCGGTGCTCCTTACA 59.740 61.111 2.85 0.00 0.00 2.41
998 1196 4.680237 CAACCTGACGCTCCGGCA 62.680 66.667 0.00 0.00 45.13 5.69
1086 1284 2.509336 GCCGATGTCACCGTCCTG 60.509 66.667 0.00 0.00 0.00 3.86
1120 1318 3.898123 CGCCCTCCTGCAGGTATATATAT 59.102 47.826 31.58 0.00 41.51 0.86
1121 1319 5.077564 CGCCCTCCTGCAGGTATATATATA 58.922 45.833 31.58 8.74 41.51 0.86
1165 1363 5.617751 CGGACATGAAAGATGAAACCAACTC 60.618 44.000 0.00 0.00 0.00 3.01
1175 1373 1.798813 GAAACCAACTCGTCATCGCTT 59.201 47.619 0.00 0.00 36.96 4.68
1182 1380 1.393726 CTCGTCATCGCTTGATCGAG 58.606 55.000 5.50 5.50 43.12 4.04
1190 1388 1.135373 TCGCTTGATCGAGTGGTTCTC 60.135 52.381 20.95 0.00 39.62 2.87
1191 1389 1.402852 CGCTTGATCGAGTGGTTCTCA 60.403 52.381 14.82 0.00 42.88 3.27
1199 1397 0.389166 GAGTGGTTCTCAGCGTGGAG 60.389 60.000 0.00 0.00 42.34 3.86
1200 1398 0.827925 AGTGGTTCTCAGCGTGGAGA 60.828 55.000 4.36 4.36 41.99 3.71
1201 1399 0.667792 GTGGTTCTCAGCGTGGAGAC 60.668 60.000 7.54 4.40 43.31 3.36
1202 1400 0.827925 TGGTTCTCAGCGTGGAGACT 60.828 55.000 7.54 0.00 43.31 3.24
1203 1401 0.318762 GGTTCTCAGCGTGGAGACTT 59.681 55.000 7.54 0.00 43.31 3.01
1232 1440 3.142174 CAACCCTCCAACTCTTCTTGTC 58.858 50.000 0.00 0.00 0.00 3.18
1241 1449 5.888724 TCCAACTCTTCTTGTCTAGATCGAT 59.111 40.000 0.00 0.00 31.54 3.59
1293 1501 5.135362 AGGTATTCTCAGTCATACTCCCTCT 59.865 44.000 0.00 0.00 0.00 3.69
1294 1502 5.242838 GGTATTCTCAGTCATACTCCCTCTG 59.757 48.000 0.00 0.00 0.00 3.35
1296 1504 4.323569 TCTCAGTCATACTCCCTCTGTT 57.676 45.455 0.00 0.00 0.00 3.16
1299 1507 5.830457 TCTCAGTCATACTCCCTCTGTTATG 59.170 44.000 0.00 0.00 0.00 1.90
1310 1518 7.690256 ACTCCCTCTGTTATGAAATAAGTGTT 58.310 34.615 0.00 0.00 39.94 3.32
1367 1584 5.617252 AGACACTTATTTTGAAACGGAGGA 58.383 37.500 0.00 0.00 0.00 3.71
1369 1586 6.204882 AGACACTTATTTTGAAACGGAGGAAG 59.795 38.462 0.00 0.00 0.00 3.46
1375 1592 6.743575 ATTTTGAAACGGAGGAAGTATGAG 57.256 37.500 0.00 0.00 0.00 2.90
1378 1595 5.073311 TGAAACGGAGGAAGTATGAGAAG 57.927 43.478 0.00 0.00 0.00 2.85
1379 1596 3.528597 AACGGAGGAAGTATGAGAAGC 57.471 47.619 0.00 0.00 0.00 3.86
1380 1597 2.457598 ACGGAGGAAGTATGAGAAGCA 58.542 47.619 0.00 0.00 0.00 3.91
1381 1598 2.428890 ACGGAGGAAGTATGAGAAGCAG 59.571 50.000 0.00 0.00 0.00 4.24
1395 1612 3.287222 AGAAGCAGCAAAACCAGTTACA 58.713 40.909 0.00 0.00 0.00 2.41
1396 1613 3.891366 AGAAGCAGCAAAACCAGTTACAT 59.109 39.130 0.00 0.00 0.00 2.29
1397 1614 5.070001 AGAAGCAGCAAAACCAGTTACATA 58.930 37.500 0.00 0.00 0.00 2.29
1451 1751 8.677148 AAGTCAAGTCTTTATTGCTCAAACTA 57.323 30.769 0.00 0.00 0.00 2.24
1452 1752 8.854614 AGTCAAGTCTTTATTGCTCAAACTAT 57.145 30.769 0.00 0.00 0.00 2.12
1453 1753 9.944376 AGTCAAGTCTTTATTGCTCAAACTATA 57.056 29.630 0.00 0.00 0.00 1.31
1495 1795 2.186891 CATGTACGAATACGCGTTGGA 58.813 47.619 20.78 0.00 42.71 3.53
1708 2008 4.424711 GTCGCCCATTGCCCCTCA 62.425 66.667 0.00 0.00 36.24 3.86
1925 2225 2.039624 AGGGCCTCATCGACCACT 59.960 61.111 0.00 0.00 0.00 4.00
1975 2275 1.871080 CACTCAACCAGCTCGTCTTT 58.129 50.000 0.00 0.00 0.00 2.52
2196 2496 2.551270 CGCGCTTCCTTGTGTGTC 59.449 61.111 5.56 0.00 0.00 3.67
2371 2679 5.842907 TCACAGAGATATCAATTACACCCG 58.157 41.667 5.32 0.00 0.00 5.28
2372 2680 5.596772 TCACAGAGATATCAATTACACCCGA 59.403 40.000 5.32 0.00 0.00 5.14
2381 2693 1.204146 ATTACACCCGACCTCTGCAT 58.796 50.000 0.00 0.00 0.00 3.96
2385 2697 1.043816 CACCCGACCTCTGCATCTAT 58.956 55.000 0.00 0.00 0.00 1.98
2418 2730 7.044181 CACAAAGACATCTAGGATACACACAT 58.956 38.462 0.00 0.00 41.41 3.21
2419 2731 7.223582 CACAAAGACATCTAGGATACACACATC 59.776 40.741 0.00 0.00 41.41 3.06
2423 2735 5.918608 ACATCTAGGATACACACATCCAAC 58.081 41.667 5.02 0.00 46.04 3.77
2485 2797 0.666374 CCAACAGAAACCGAACCACC 59.334 55.000 0.00 0.00 0.00 4.61
2487 2799 2.485835 CCAACAGAAACCGAACCACCTA 60.486 50.000 0.00 0.00 0.00 3.08
2488 2800 2.806244 CAACAGAAACCGAACCACCTAG 59.194 50.000 0.00 0.00 0.00 3.02
2489 2801 1.346722 ACAGAAACCGAACCACCTAGG 59.653 52.381 7.41 7.41 45.67 3.02
2490 2802 0.323957 AGAAACCGAACCACCTAGGC 59.676 55.000 9.30 0.00 43.14 3.93
2491 2803 0.675837 GAAACCGAACCACCTAGGCC 60.676 60.000 9.30 0.00 43.14 5.19
2492 2804 2.133359 AAACCGAACCACCTAGGCCC 62.133 60.000 9.30 0.00 43.14 5.80
2493 2805 2.687566 CCGAACCACCTAGGCCCT 60.688 66.667 9.30 0.00 43.14 5.19
2494 2806 2.584608 CGAACCACCTAGGCCCTG 59.415 66.667 9.30 0.00 43.14 4.45
2495 2807 2.291043 CGAACCACCTAGGCCCTGT 61.291 63.158 9.30 0.00 43.14 4.00
2496 2808 1.838073 CGAACCACCTAGGCCCTGTT 61.838 60.000 9.30 7.10 43.14 3.16
2497 2809 0.404426 GAACCACCTAGGCCCTGTTT 59.596 55.000 9.30 0.00 43.14 2.83
2498 2810 0.112412 AACCACCTAGGCCCTGTTTG 59.888 55.000 9.30 0.00 43.14 2.93
2499 2811 1.000896 CCACCTAGGCCCTGTTTGG 60.001 63.158 9.30 2.99 0.00 3.28
2500 2812 1.767692 CACCTAGGCCCTGTTTGGT 59.232 57.895 9.30 0.00 0.00 3.67
2501 2813 0.112412 CACCTAGGCCCTGTTTGGTT 59.888 55.000 9.30 0.00 0.00 3.67
2502 2814 0.404426 ACCTAGGCCCTGTTTGGTTC 59.596 55.000 9.30 0.00 0.00 3.62
2503 2815 0.676782 CCTAGGCCCTGTTTGGTTCG 60.677 60.000 0.00 0.00 0.00 3.95
2504 2816 0.676782 CTAGGCCCTGTTTGGTTCGG 60.677 60.000 0.00 0.00 0.00 4.30
2505 2817 2.757980 TAGGCCCTGTTTGGTTCGGC 62.758 60.000 0.00 0.00 38.96 5.54
2506 2818 2.597510 GCCCTGTTTGGTTCGGCT 60.598 61.111 0.00 0.00 36.65 5.52
2507 2819 2.919494 GCCCTGTTTGGTTCGGCTG 61.919 63.158 0.00 0.00 36.65 4.85
2508 2820 1.528309 CCCTGTTTGGTTCGGCTGT 60.528 57.895 0.00 0.00 0.00 4.40
2509 2821 1.654220 CCTGTTTGGTTCGGCTGTG 59.346 57.895 0.00 0.00 0.00 3.66
2510 2822 1.654220 CTGTTTGGTTCGGCTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
2511 2823 0.817634 CTGTTTGGTTCGGCTGTGGA 60.818 55.000 0.00 0.00 0.00 4.02
2512 2824 0.179004 TGTTTGGTTCGGCTGTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
2513 2825 0.958822 GTTTGGTTCGGCTGTGGATT 59.041 50.000 0.00 0.00 0.00 3.01
2514 2826 1.339929 GTTTGGTTCGGCTGTGGATTT 59.660 47.619 0.00 0.00 0.00 2.17
2515 2827 1.243902 TTGGTTCGGCTGTGGATTTC 58.756 50.000 0.00 0.00 0.00 2.17
2516 2828 0.400213 TGGTTCGGCTGTGGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
2517 2829 1.626321 TGGTTCGGCTGTGGATTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
2518 2830 2.039216 TGGTTCGGCTGTGGATTTCTAA 59.961 45.455 0.00 0.00 0.00 2.10
2519 2831 3.078837 GGTTCGGCTGTGGATTTCTAAA 58.921 45.455 0.00 0.00 0.00 1.85
2520 2832 3.504520 GGTTCGGCTGTGGATTTCTAAAA 59.495 43.478 0.00 0.00 0.00 1.52
2521 2833 4.379499 GGTTCGGCTGTGGATTTCTAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
2522 2834 2.747446 TCGGCTGTGGATTTCTAAAAGC 59.253 45.455 0.00 0.00 0.00 3.51
2523 2835 2.487762 CGGCTGTGGATTTCTAAAAGCA 59.512 45.455 0.00 0.00 0.00 3.91
2524 2836 3.426695 CGGCTGTGGATTTCTAAAAGCAG 60.427 47.826 0.00 0.00 0.00 4.24
2525 2837 3.505836 GCTGTGGATTTCTAAAAGCAGC 58.494 45.455 0.00 0.00 40.66 5.25
2526 2838 3.192212 GCTGTGGATTTCTAAAAGCAGCT 59.808 43.478 0.00 0.00 43.08 4.24
2527 2839 4.730657 CTGTGGATTTCTAAAAGCAGCTG 58.269 43.478 10.11 10.11 0.00 4.24
2528 2840 4.144297 TGTGGATTTCTAAAAGCAGCTGT 58.856 39.130 16.64 0.00 0.00 4.40
2529 2841 4.022935 TGTGGATTTCTAAAAGCAGCTGTG 60.023 41.667 16.64 0.00 0.00 3.66
2530 2842 4.216257 GTGGATTTCTAAAAGCAGCTGTGA 59.784 41.667 16.64 1.92 0.00 3.58
2531 2843 4.826733 TGGATTTCTAAAAGCAGCTGTGAA 59.173 37.500 16.64 7.75 0.00 3.18
2532 2844 5.301551 TGGATTTCTAAAAGCAGCTGTGAAA 59.698 36.000 16.64 15.06 0.00 2.69
2533 2845 6.183360 TGGATTTCTAAAAGCAGCTGTGAAAA 60.183 34.615 16.64 7.20 0.00 2.29
2534 2846 6.701400 GGATTTCTAAAAGCAGCTGTGAAAAA 59.299 34.615 16.64 7.71 0.00 1.94
2535 2847 7.386025 GGATTTCTAAAAGCAGCTGTGAAAAAT 59.614 33.333 16.64 11.76 0.00 1.82
2536 2848 7.698836 TTTCTAAAAGCAGCTGTGAAAAATC 57.301 32.000 16.64 0.00 0.00 2.17
2537 2849 6.639632 TCTAAAAGCAGCTGTGAAAAATCT 57.360 33.333 16.64 0.00 0.00 2.40
2538 2850 7.744087 TCTAAAAGCAGCTGTGAAAAATCTA 57.256 32.000 16.64 0.00 0.00 1.98
2539 2851 8.340618 TCTAAAAGCAGCTGTGAAAAATCTAT 57.659 30.769 16.64 0.00 0.00 1.98
2540 2852 8.796475 TCTAAAAGCAGCTGTGAAAAATCTATT 58.204 29.630 16.64 0.00 0.00 1.73
2543 2855 8.922058 AAAGCAGCTGTGAAAAATCTATTATG 57.078 30.769 16.64 0.00 0.00 1.90
2544 2856 7.035840 AGCAGCTGTGAAAAATCTATTATGG 57.964 36.000 16.64 0.00 0.00 2.74
2545 2857 6.830324 AGCAGCTGTGAAAAATCTATTATGGA 59.170 34.615 16.64 0.00 0.00 3.41
2546 2858 7.340232 AGCAGCTGTGAAAAATCTATTATGGAA 59.660 33.333 16.64 0.00 0.00 3.53
2547 2859 7.975616 GCAGCTGTGAAAAATCTATTATGGAAA 59.024 33.333 16.64 0.00 0.00 3.13
2548 2860 9.859427 CAGCTGTGAAAAATCTATTATGGAAAA 57.141 29.630 5.25 0.00 0.00 2.29
2578 2890 9.956720 GATGTGAAAAAGATATAGGTCATTTGG 57.043 33.333 0.00 0.00 0.00 3.28
2579 2891 7.771183 TGTGAAAAAGATATAGGTCATTTGGC 58.229 34.615 0.00 0.00 0.00 4.52
2580 2892 7.395772 TGTGAAAAAGATATAGGTCATTTGGCA 59.604 33.333 0.00 0.00 0.00 4.92
2581 2893 8.250332 GTGAAAAAGATATAGGTCATTTGGCAA 58.750 33.333 0.00 0.00 0.00 4.52
2582 2894 8.811017 TGAAAAAGATATAGGTCATTTGGCAAA 58.189 29.630 16.01 16.01 0.00 3.68
2583 2895 9.087424 GAAAAAGATATAGGTCATTTGGCAAAC 57.913 33.333 16.00 3.12 0.00 2.93
2584 2896 6.715347 AAGATATAGGTCATTTGGCAAACC 57.285 37.500 16.00 13.12 0.00 3.27
2595 2907 1.825090 TGGCAAACCAGCTGATACAG 58.175 50.000 17.39 0.00 42.67 2.74
2612 2924 8.123445 CTGATACAGCTTTTTCATATTTTGGC 57.877 34.615 0.00 0.00 0.00 4.52
2613 2925 7.041107 TGATACAGCTTTTTCATATTTTGGCC 58.959 34.615 0.00 0.00 0.00 5.36
2614 2926 4.578871 ACAGCTTTTTCATATTTTGGCCC 58.421 39.130 0.00 0.00 0.00 5.80
2615 2927 3.618150 CAGCTTTTTCATATTTTGGCCCG 59.382 43.478 0.00 0.00 0.00 6.13
2616 2928 2.351418 GCTTTTTCATATTTTGGCCCGC 59.649 45.455 0.00 0.00 0.00 6.13
2617 2929 3.594134 CTTTTTCATATTTTGGCCCGCA 58.406 40.909 0.00 0.00 0.00 5.69
2618 2930 3.685139 TTTTCATATTTTGGCCCGCAA 57.315 38.095 0.00 0.00 0.00 4.85
2619 2931 2.663826 TTCATATTTTGGCCCGCAAC 57.336 45.000 0.00 0.00 0.00 4.17
2620 2932 0.453793 TCATATTTTGGCCCGCAACG 59.546 50.000 0.00 0.00 0.00 4.10
2637 2949 6.624710 CGCAACGGAATCATATTTTGAAAA 57.375 33.333 0.00 0.00 38.03 2.29
2638 2950 7.043454 CGCAACGGAATCATATTTTGAAAAA 57.957 32.000 0.00 0.00 38.03 1.94
2639 2951 6.947680 CGCAACGGAATCATATTTTGAAAAAC 59.052 34.615 0.00 0.00 38.03 2.43
2640 2952 7.358765 CGCAACGGAATCATATTTTGAAAAACA 60.359 33.333 0.00 0.00 38.03 2.83
2641 2953 7.739911 GCAACGGAATCATATTTTGAAAAACAC 59.260 33.333 0.00 0.00 38.03 3.32
2642 2954 7.561237 ACGGAATCATATTTTGAAAAACACG 57.439 32.000 0.00 0.00 38.03 4.49
2643 2955 7.142680 ACGGAATCATATTTTGAAAAACACGT 58.857 30.769 0.00 0.00 38.03 4.49
2644 2956 7.325097 ACGGAATCATATTTTGAAAAACACGTC 59.675 33.333 0.00 0.00 38.03 4.34
2645 2957 7.324856 CGGAATCATATTTTGAAAAACACGTCA 59.675 33.333 0.00 0.00 38.03 4.35
2646 2958 9.139174 GGAATCATATTTTGAAAAACACGTCAT 57.861 29.630 0.00 0.00 38.03 3.06
2647 2959 9.941991 GAATCATATTTTGAAAAACACGTCATG 57.058 29.630 0.00 0.00 38.03 3.07
2648 2960 7.865875 TCATATTTTGAAAAACACGTCATGG 57.134 32.000 0.00 0.00 0.00 3.66
2649 2961 6.865726 TCATATTTTGAAAAACACGTCATGGG 59.134 34.615 0.00 0.00 0.00 4.00
2650 2962 2.500509 TTGAAAAACACGTCATGGGC 57.499 45.000 0.00 0.00 0.00 5.36
2651 2963 1.686355 TGAAAAACACGTCATGGGCT 58.314 45.000 0.00 0.00 0.00 5.19
2652 2964 1.336440 TGAAAAACACGTCATGGGCTG 59.664 47.619 0.00 0.00 0.00 4.85
2653 2965 0.031994 AAAAACACGTCATGGGCTGC 59.968 50.000 0.00 0.00 0.00 5.25
2654 2966 0.823356 AAAACACGTCATGGGCTGCT 60.823 50.000 0.00 0.00 0.00 4.24
2655 2967 0.823356 AAACACGTCATGGGCTGCTT 60.823 50.000 0.00 0.00 0.00 3.91
2656 2968 1.237285 AACACGTCATGGGCTGCTTC 61.237 55.000 0.00 0.00 0.00 3.86
2657 2969 2.045926 ACGTCATGGGCTGCTTCC 60.046 61.111 0.00 0.00 0.00 3.46
2658 2970 3.197790 CGTCATGGGCTGCTTCCG 61.198 66.667 0.00 0.00 0.00 4.30
2659 2971 3.512516 GTCATGGGCTGCTTCCGC 61.513 66.667 0.00 0.00 0.00 5.54
2660 2972 3.720601 TCATGGGCTGCTTCCGCT 61.721 61.111 0.00 0.00 36.97 5.52
2661 2973 2.753043 CATGGGCTGCTTCCGCTT 60.753 61.111 0.00 0.00 36.97 4.68
2662 2974 2.036256 ATGGGCTGCTTCCGCTTT 59.964 55.556 0.00 0.00 36.97 3.51
2663 2975 1.607467 ATGGGCTGCTTCCGCTTTT 60.607 52.632 0.00 0.00 36.97 2.27
2664 2976 1.880819 ATGGGCTGCTTCCGCTTTTG 61.881 55.000 0.00 0.00 36.97 2.44
2665 2977 2.259511 GGCTGCTTCCGCTTTTGG 59.740 61.111 0.00 0.00 36.97 3.28
2666 2978 2.564721 GGCTGCTTCCGCTTTTGGT 61.565 57.895 0.00 0.00 36.97 3.67
2667 2979 1.363807 GCTGCTTCCGCTTTTGGTT 59.636 52.632 0.00 0.00 36.97 3.67
2668 2980 0.664466 GCTGCTTCCGCTTTTGGTTC 60.664 55.000 0.00 0.00 36.97 3.62
2669 2981 0.667993 CTGCTTCCGCTTTTGGTTCA 59.332 50.000 0.00 0.00 36.97 3.18
2670 2982 0.667993 TGCTTCCGCTTTTGGTTCAG 59.332 50.000 0.00 0.00 36.97 3.02
2671 2983 0.951558 GCTTCCGCTTTTGGTTCAGA 59.048 50.000 0.00 0.00 0.00 3.27
2672 2984 1.541588 GCTTCCGCTTTTGGTTCAGAT 59.458 47.619 0.00 0.00 0.00 2.90
2673 2985 2.029918 GCTTCCGCTTTTGGTTCAGATT 60.030 45.455 0.00 0.00 0.00 2.40
2674 2986 3.552890 GCTTCCGCTTTTGGTTCAGATTT 60.553 43.478 0.00 0.00 0.00 2.17
2675 2987 4.620982 CTTCCGCTTTTGGTTCAGATTTT 58.379 39.130 0.00 0.00 0.00 1.82
2676 2988 3.976169 TCCGCTTTTGGTTCAGATTTTG 58.024 40.909 0.00 0.00 0.00 2.44
2677 2989 3.059166 CCGCTTTTGGTTCAGATTTTGG 58.941 45.455 0.00 0.00 0.00 3.28
2678 2990 2.476241 CGCTTTTGGTTCAGATTTTGGC 59.524 45.455 0.00 0.00 0.00 4.52
2679 2991 3.465871 GCTTTTGGTTCAGATTTTGGCA 58.534 40.909 0.00 0.00 0.00 4.92
2680 2992 3.495753 GCTTTTGGTTCAGATTTTGGCAG 59.504 43.478 0.00 0.00 0.00 4.85
2681 2993 2.818130 TTGGTTCAGATTTTGGCAGC 57.182 45.000 0.00 0.00 0.00 5.25
2682 2994 0.597568 TGGTTCAGATTTTGGCAGCG 59.402 50.000 0.00 0.00 0.00 5.18
2683 2995 0.109132 GGTTCAGATTTTGGCAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
2684 2996 0.881118 GTTCAGATTTTGGCAGCGGA 59.119 50.000 0.00 0.00 0.00 5.54
2685 2997 1.474077 GTTCAGATTTTGGCAGCGGAT 59.526 47.619 0.00 0.00 0.00 4.18
2686 2998 1.838112 TCAGATTTTGGCAGCGGATT 58.162 45.000 0.00 0.00 0.00 3.01
2687 2999 2.170166 TCAGATTTTGGCAGCGGATTT 58.830 42.857 0.00 0.00 0.00 2.17
2688 3000 2.164219 TCAGATTTTGGCAGCGGATTTC 59.836 45.455 0.00 0.00 0.00 2.17
2689 3001 2.165030 CAGATTTTGGCAGCGGATTTCT 59.835 45.455 0.00 0.00 0.00 2.52
2690 3002 3.378112 CAGATTTTGGCAGCGGATTTCTA 59.622 43.478 0.00 0.00 0.00 2.10
2691 3003 3.629398 AGATTTTGGCAGCGGATTTCTAG 59.371 43.478 0.00 0.00 0.00 2.43
2692 3004 2.779755 TTTGGCAGCGGATTTCTAGA 57.220 45.000 0.00 0.00 0.00 2.43
2693 3005 2.779755 TTGGCAGCGGATTTCTAGAA 57.220 45.000 0.00 0.00 0.00 2.10
2694 3006 3.281727 TTGGCAGCGGATTTCTAGAAT 57.718 42.857 5.89 0.00 0.00 2.40
2695 3007 2.838736 TGGCAGCGGATTTCTAGAATC 58.161 47.619 5.89 6.23 0.00 2.52
2696 3008 1.795286 GGCAGCGGATTTCTAGAATCG 59.205 52.381 5.89 11.65 0.00 3.34
2697 3009 1.795286 GCAGCGGATTTCTAGAATCGG 59.205 52.381 5.89 10.89 0.00 4.18
2698 3010 2.545952 GCAGCGGATTTCTAGAATCGGA 60.546 50.000 5.89 0.00 31.17 4.55
2699 3011 3.862642 GCAGCGGATTTCTAGAATCGGAT 60.863 47.826 5.89 6.69 31.17 4.18
2700 3012 4.310769 CAGCGGATTTCTAGAATCGGATT 58.689 43.478 5.89 2.19 31.17 3.01
2701 3013 4.387256 CAGCGGATTTCTAGAATCGGATTC 59.613 45.833 20.48 20.48 39.56 2.52
2709 3021 3.788672 GAATCGGATTCTGCTGGGT 57.211 52.632 20.70 0.00 36.37 4.51
2710 3022 2.044123 GAATCGGATTCTGCTGGGTT 57.956 50.000 20.70 0.00 36.37 4.11
2711 3023 1.943340 GAATCGGATTCTGCTGGGTTC 59.057 52.381 20.70 0.00 36.37 3.62
2712 3024 0.179073 ATCGGATTCTGCTGGGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
2713 3025 2.464459 CGGATTCTGCTGGGTTCGC 61.464 63.158 0.00 0.00 0.00 4.70
2714 3026 2.115291 GGATTCTGCTGGGTTCGCC 61.115 63.158 0.00 0.00 0.00 5.54
2726 3038 2.467566 GGTTCGCCCTTTAGTTCAGA 57.532 50.000 0.00 0.00 0.00 3.27
2727 3039 2.987232 GGTTCGCCCTTTAGTTCAGAT 58.013 47.619 0.00 0.00 0.00 2.90
2728 3040 3.344515 GGTTCGCCCTTTAGTTCAGATT 58.655 45.455 0.00 0.00 0.00 2.40
2729 3041 3.374367 GGTTCGCCCTTTAGTTCAGATTC 59.626 47.826 0.00 0.00 0.00 2.52
2730 3042 4.254492 GTTCGCCCTTTAGTTCAGATTCT 58.746 43.478 0.00 0.00 0.00 2.40
2731 3043 3.861840 TCGCCCTTTAGTTCAGATTCTG 58.138 45.455 7.38 7.38 0.00 3.02
2732 3044 2.352960 CGCCCTTTAGTTCAGATTCTGC 59.647 50.000 8.89 0.00 0.00 4.26
2733 3045 3.615155 GCCCTTTAGTTCAGATTCTGCT 58.385 45.455 8.89 4.15 0.00 4.24
2734 3046 3.376546 GCCCTTTAGTTCAGATTCTGCTG 59.623 47.826 8.89 0.00 37.24 4.41
2735 3047 3.376546 CCCTTTAGTTCAGATTCTGCTGC 59.623 47.826 8.89 0.00 35.86 5.25
2736 3048 3.063180 CCTTTAGTTCAGATTCTGCTGCG 59.937 47.826 8.89 0.00 35.86 5.18
2737 3049 1.645034 TAGTTCAGATTCTGCTGCGC 58.355 50.000 8.89 0.00 35.86 6.09
2738 3050 1.059994 GTTCAGATTCTGCTGCGCG 59.940 57.895 8.89 0.00 35.86 6.86
2739 3051 2.102438 TTCAGATTCTGCTGCGCGG 61.102 57.895 13.18 13.18 35.86 6.46
2740 3052 4.233635 CAGATTCTGCTGCGCGGC 62.234 66.667 34.00 34.00 34.49 6.53
2741 3053 4.765449 AGATTCTGCTGCGCGGCA 62.765 61.111 39.10 39.10 40.15 5.69
2750 3062 3.183259 TGCGCGGCAGTAAAATCC 58.817 55.556 8.83 0.00 33.32 3.01
2751 3063 1.672682 TGCGCGGCAGTAAAATCCA 60.673 52.632 8.83 0.00 33.32 3.41
2752 3064 1.029408 TGCGCGGCAGTAAAATCCAT 61.029 50.000 8.83 0.00 33.32 3.41
2753 3065 0.317020 GCGCGGCAGTAAAATCCATC 60.317 55.000 8.83 0.00 0.00 3.51
2754 3066 0.042188 CGCGGCAGTAAAATCCATCG 60.042 55.000 0.00 0.00 0.00 3.84
2755 3067 1.295792 GCGGCAGTAAAATCCATCGA 58.704 50.000 0.00 0.00 0.00 3.59
2756 3068 1.873591 GCGGCAGTAAAATCCATCGAT 59.126 47.619 0.00 0.00 0.00 3.59
2757 3069 3.064207 GCGGCAGTAAAATCCATCGATA 58.936 45.455 0.00 0.00 0.00 2.92
2758 3070 3.496884 GCGGCAGTAAAATCCATCGATAA 59.503 43.478 0.00 0.00 0.00 1.75
2759 3071 4.024387 GCGGCAGTAAAATCCATCGATAAA 60.024 41.667 0.00 0.00 0.00 1.40
2760 3072 5.504994 GCGGCAGTAAAATCCATCGATAAAA 60.505 40.000 0.00 0.00 0.00 1.52
2761 3073 6.136071 CGGCAGTAAAATCCATCGATAAAAG 58.864 40.000 0.00 0.00 0.00 2.27
2762 3074 6.238374 CGGCAGTAAAATCCATCGATAAAAGT 60.238 38.462 0.00 0.00 0.00 2.66
2763 3075 7.480810 GGCAGTAAAATCCATCGATAAAAGTT 58.519 34.615 0.00 0.00 0.00 2.66
2764 3076 7.432252 GGCAGTAAAATCCATCGATAAAAGTTG 59.568 37.037 0.00 0.00 0.00 3.16
2765 3077 8.181573 GCAGTAAAATCCATCGATAAAAGTTGA 58.818 33.333 0.00 0.00 0.00 3.18
2768 3080 9.285770 GTAAAATCCATCGATAAAAGTTGAACC 57.714 33.333 0.00 0.00 0.00 3.62
2769 3081 7.461182 AAATCCATCGATAAAAGTTGAACCA 57.539 32.000 0.00 0.00 0.00 3.67
2770 3082 7.461182 AATCCATCGATAAAAGTTGAACCAA 57.539 32.000 0.00 0.00 0.00 3.67
2771 3083 6.885952 TCCATCGATAAAAGTTGAACCAAA 57.114 33.333 0.00 0.00 0.00 3.28
2772 3084 6.674066 TCCATCGATAAAAGTTGAACCAAAC 58.326 36.000 0.00 0.00 0.00 2.93
2773 3085 6.263392 TCCATCGATAAAAGTTGAACCAAACA 59.737 34.615 0.00 0.00 32.21 2.83
2774 3086 6.582295 CCATCGATAAAAGTTGAACCAAACAG 59.418 38.462 0.00 0.00 32.21 3.16
2775 3087 6.928979 TCGATAAAAGTTGAACCAAACAGA 57.071 33.333 0.00 0.00 32.21 3.41
2776 3088 6.954944 TCGATAAAAGTTGAACCAAACAGAG 58.045 36.000 0.00 0.00 32.21 3.35
2777 3089 5.625311 CGATAAAAGTTGAACCAAACAGAGC 59.375 40.000 0.00 0.00 32.21 4.09
2778 3090 3.801114 AAAGTTGAACCAAACAGAGCC 57.199 42.857 0.00 0.00 32.21 4.70
2779 3091 2.736670 AGTTGAACCAAACAGAGCCT 57.263 45.000 0.00 0.00 32.21 4.58
2780 3092 3.857157 AGTTGAACCAAACAGAGCCTA 57.143 42.857 0.00 0.00 32.21 3.93
2781 3093 3.744660 AGTTGAACCAAACAGAGCCTAG 58.255 45.455 0.00 0.00 32.21 3.02
2782 3094 3.391296 AGTTGAACCAAACAGAGCCTAGA 59.609 43.478 0.00 0.00 32.21 2.43
2783 3095 4.134563 GTTGAACCAAACAGAGCCTAGAA 58.865 43.478 0.00 0.00 0.00 2.10
2784 3096 4.008074 TGAACCAAACAGAGCCTAGAAG 57.992 45.455 0.00 0.00 0.00 2.85
2785 3097 3.646162 TGAACCAAACAGAGCCTAGAAGA 59.354 43.478 0.00 0.00 0.00 2.87
2836 3148 1.594310 GCATCTCTAGCCGATCCCC 59.406 63.158 0.00 0.00 0.00 4.81
2845 3157 2.364972 AGCCGATCCCCTAAAAATGG 57.635 50.000 0.00 0.00 0.00 3.16
2856 3168 3.081804 CCTAAAAATGGCGGTTCACTCT 58.918 45.455 0.00 0.00 0.00 3.24
2864 3176 2.029290 TGGCGGTTCACTCTTCTAACTC 60.029 50.000 0.00 0.00 0.00 3.01
2865 3177 2.251893 GCGGTTCACTCTTCTAACTCG 58.748 52.381 0.00 0.00 0.00 4.18
2871 3183 4.362932 TCACTCTTCTAACTCGCATCTG 57.637 45.455 0.00 0.00 0.00 2.90
2873 3185 2.159170 ACTCTTCTAACTCGCATCTGGC 60.159 50.000 0.00 0.00 39.90 4.85
2874 3186 2.100584 CTCTTCTAACTCGCATCTGGCT 59.899 50.000 0.00 0.00 41.67 4.75
2885 3198 3.002791 CGCATCTGGCTGAAGTCTAAAA 58.997 45.455 0.00 0.00 41.67 1.52
2911 3224 4.603985 GTTAGGTGCGCAAAACTTTTACT 58.396 39.130 14.00 1.92 0.00 2.24
2919 3232 4.320275 GCGCAAAACTTTTACTCCTTAGCT 60.320 41.667 0.30 0.00 0.00 3.32
2921 3234 5.383130 GCAAAACTTTTACTCCTTAGCTCG 58.617 41.667 0.00 0.00 0.00 5.03
2922 3235 5.049612 GCAAAACTTTTACTCCTTAGCTCGT 60.050 40.000 0.00 0.00 0.00 4.18
2923 3236 6.146673 GCAAAACTTTTACTCCTTAGCTCGTA 59.853 38.462 0.00 0.00 0.00 3.43
2935 3249 4.418392 CTTAGCTCGTAGACGCCTAAAAA 58.582 43.478 0.00 0.00 39.60 1.94
2940 3254 3.981211 TCGTAGACGCCTAAAAACACTT 58.019 40.909 0.00 0.00 39.60 3.16
2950 3264 1.119684 AAAAACACTTGGCCTCCACC 58.880 50.000 3.32 0.00 30.78 4.61
2952 3266 2.976494 AAACACTTGGCCTCCACCCG 62.976 60.000 3.32 0.00 30.78 5.28
2953 3267 3.953775 CACTTGGCCTCCACCCGT 61.954 66.667 3.32 0.00 30.78 5.28
2968 3284 1.688197 ACCCGTCCGAGTAAAAGTTGA 59.312 47.619 0.00 0.00 0.00 3.18
2972 3288 2.762745 GTCCGAGTAAAAGTTGAGGCA 58.237 47.619 0.00 0.00 0.00 4.75
3002 3321 1.288508 CCCCCATCCCCACTGATTCA 61.289 60.000 0.00 0.00 0.00 2.57
3009 3328 0.394216 CCCCACTGATTCATCGCCAA 60.394 55.000 0.00 0.00 0.00 4.52
3010 3329 0.734889 CCCACTGATTCATCGCCAAC 59.265 55.000 0.00 0.00 0.00 3.77
3017 3336 0.107897 ATTCATCGCCAACGCACCTA 60.108 50.000 0.00 0.00 39.84 3.08
3020 3339 2.949909 ATCGCCAACGCACCTACCA 61.950 57.895 0.00 0.00 39.84 3.25
3023 3342 2.031919 CCAACGCACCTACCAGCA 59.968 61.111 0.00 0.00 0.00 4.41
3034 3353 1.837439 CCTACCAGCAACTATCCACCA 59.163 52.381 0.00 0.00 0.00 4.17
3036 3355 0.328258 ACCAGCAACTATCCACCACC 59.672 55.000 0.00 0.00 0.00 4.61
3041 3360 1.212935 GCAACTATCCACCACCTCCAT 59.787 52.381 0.00 0.00 0.00 3.41
3042 3361 2.357154 GCAACTATCCACCACCTCCATT 60.357 50.000 0.00 0.00 0.00 3.16
3051 3370 3.561097 CCACCACCTCCATTGTTACATCA 60.561 47.826 0.00 0.00 0.00 3.07
3052 3371 4.272489 CACCACCTCCATTGTTACATCAT 58.728 43.478 0.00 0.00 0.00 2.45
3059 3378 3.118445 TCCATTGTTACATCATCGCCTCA 60.118 43.478 0.00 0.00 0.00 3.86
3071 3390 4.440145 GCCTCATTTGGCCCTTGA 57.560 55.556 0.00 0.00 46.82 3.02
3073 3392 0.899717 GCCTCATTTGGCCCTTGACA 60.900 55.000 0.00 0.00 46.82 3.58
3126 3445 3.785499 CGCCGTCGTCTGAGTCGA 61.785 66.667 0.00 0.00 34.91 4.20
3127 3446 2.098680 GCCGTCGTCTGAGTCGAG 59.901 66.667 1.37 0.00 37.99 4.04
3128 3447 2.098680 CCGTCGTCTGAGTCGAGC 59.901 66.667 1.37 0.00 37.99 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 222 2.203983 TGCTGGAGGAGGAAGCCA 60.204 61.111 0.00 0.00 36.05 4.75
687 692 3.656045 CACTTTTTCGGCGCCGGT 61.656 61.111 44.95 32.15 40.25 5.28
754 761 1.674322 GCGGAAAGCCTTGGCTACA 60.674 57.895 15.12 0.00 40.81 2.74
800 807 0.320374 TCGTGGAAGAAGTTGCGGAT 59.680 50.000 0.00 0.00 0.00 4.18
807 814 1.270358 GGAAGCAGTCGTGGAAGAAGT 60.270 52.381 0.00 0.00 0.00 3.01
845 852 1.891811 TGAATGAAATCCGGCAAAGCA 59.108 42.857 0.00 0.00 0.00 3.91
846 853 2.652941 TGAATGAAATCCGGCAAAGC 57.347 45.000 0.00 0.00 0.00 3.51
847 854 6.563422 TCTTAATGAATGAAATCCGGCAAAG 58.437 36.000 0.00 0.00 0.00 2.77
848 855 6.522625 TCTTAATGAATGAAATCCGGCAAA 57.477 33.333 0.00 0.00 0.00 3.68
850 857 5.885352 TCTTCTTAATGAATGAAATCCGGCA 59.115 36.000 0.00 0.00 33.71 5.69
851 858 6.377327 TCTTCTTAATGAATGAAATCCGGC 57.623 37.500 0.00 0.00 33.71 6.13
869 937 8.345724 AGTACATTTCATCTTTGCATTCTTCT 57.654 30.769 0.00 0.00 0.00 2.85
876 944 6.533723 CCTACGTAGTACATTTCATCTTTGCA 59.466 38.462 20.73 0.00 45.11 4.08
877 945 6.534079 ACCTACGTAGTACATTTCATCTTTGC 59.466 38.462 20.73 0.00 45.11 3.68
897 1031 6.859508 GCAACAGTAAAACACCAAATACCTAC 59.140 38.462 0.00 0.00 0.00 3.18
900 1098 5.593010 TGCAACAGTAAAACACCAAATACC 58.407 37.500 0.00 0.00 0.00 2.73
904 1102 3.118956 CCCTGCAACAGTAAAACACCAAA 60.119 43.478 0.00 0.00 0.00 3.28
910 1108 2.422276 CAGCCCTGCAACAGTAAAAC 57.578 50.000 0.00 0.00 0.00 2.43
931 1129 3.620300 TAAGGAGCACCGACGCGTG 62.620 63.158 20.70 5.54 41.83 5.34
951 1149 0.109342 CCTGCTCACTGTTGTTCCCT 59.891 55.000 0.00 0.00 0.00 4.20
998 1196 1.459158 ATGAGCTCGAGGGCCATCT 60.459 57.895 16.60 0.00 0.00 2.90
1009 1207 1.035923 TGGATGTCCTCGATGAGCTC 58.964 55.000 6.82 6.82 36.82 4.09
1120 1318 1.028905 GTGTTTGTGGCAGGCAAGTA 58.971 50.000 0.00 0.00 0.00 2.24
1121 1319 0.969917 TGTGTTTGTGGCAGGCAAGT 60.970 50.000 0.00 0.00 0.00 3.16
1126 1324 1.821759 TCCGTGTGTTTGTGGCAGG 60.822 57.895 0.00 0.00 0.00 4.85
1165 1363 0.842613 CACTCGATCAAGCGATGACG 59.157 55.000 0.00 4.80 41.93 4.35
1182 1380 0.667792 GTCTCCACGCTGAGAACCAC 60.668 60.000 6.10 0.00 42.75 4.16
1190 1388 4.682787 TGATAATGTAAGTCTCCACGCTG 58.317 43.478 0.00 0.00 0.00 5.18
1191 1389 5.109903 GTTGATAATGTAAGTCTCCACGCT 58.890 41.667 0.00 0.00 0.00 5.07
1199 1397 6.415573 AGTTGGAGGGTTGATAATGTAAGTC 58.584 40.000 0.00 0.00 0.00 3.01
1200 1398 6.215636 AGAGTTGGAGGGTTGATAATGTAAGT 59.784 38.462 0.00 0.00 0.00 2.24
1201 1399 6.653989 AGAGTTGGAGGGTTGATAATGTAAG 58.346 40.000 0.00 0.00 0.00 2.34
1202 1400 6.636454 AGAGTTGGAGGGTTGATAATGTAA 57.364 37.500 0.00 0.00 0.00 2.41
1203 1401 6.443849 AGAAGAGTTGGAGGGTTGATAATGTA 59.556 38.462 0.00 0.00 0.00 2.29
1232 1440 7.061210 GTCCACGATATGAACAAATCGATCTAG 59.939 40.741 11.27 0.00 46.08 2.43
1241 1449 4.900684 TCCAAGTCCACGATATGAACAAA 58.099 39.130 0.00 0.00 0.00 2.83
1251 1459 3.170717 ACCTATCTTTCCAAGTCCACGA 58.829 45.455 0.00 0.00 0.00 4.35
1271 1479 5.830991 ACAGAGGGAGTATGACTGAGAATAC 59.169 44.000 0.00 0.00 33.53 1.89
1280 1488 9.482627 CTTATTTCATAACAGAGGGAGTATGAC 57.517 37.037 0.00 0.00 0.00 3.06
1340 1548 7.308589 CCTCCGTTTCAAAATAAGTGTCTCAAT 60.309 37.037 0.00 0.00 0.00 2.57
1347 1564 6.313744 ACTTCCTCCGTTTCAAAATAAGTG 57.686 37.500 0.00 0.00 0.00 3.16
1358 1575 3.260884 TGCTTCTCATACTTCCTCCGTTT 59.739 43.478 0.00 0.00 0.00 3.60
1359 1576 2.832129 TGCTTCTCATACTTCCTCCGTT 59.168 45.455 0.00 0.00 0.00 4.44
1367 1584 4.144297 TGGTTTTGCTGCTTCTCATACTT 58.856 39.130 0.00 0.00 0.00 2.24
1369 1586 3.503748 ACTGGTTTTGCTGCTTCTCATAC 59.496 43.478 0.00 0.00 0.00 2.39
1375 1592 3.708563 TGTAACTGGTTTTGCTGCTTC 57.291 42.857 0.00 0.00 0.00 3.86
1378 1595 5.121221 AGTTATGTAACTGGTTTTGCTGC 57.879 39.130 4.70 0.00 44.30 5.25
1379 1596 7.435068 AGTAGTTATGTAACTGGTTTTGCTG 57.565 36.000 14.11 0.00 45.44 4.41
1380 1597 8.996271 GTTAGTAGTTATGTAACTGGTTTTGCT 58.004 33.333 14.11 1.09 45.44 3.91
1381 1598 8.996271 AGTTAGTAGTTATGTAACTGGTTTTGC 58.004 33.333 14.11 1.55 45.44 3.68
1420 1720 5.532406 AGCAATAAAGACTTGACTTTGCTCA 59.468 36.000 15.73 0.00 37.07 4.26
1422 1722 5.532406 TGAGCAATAAAGACTTGACTTTGCT 59.468 36.000 19.04 19.04 41.24 3.91
1423 1723 5.762045 TGAGCAATAAAGACTTGACTTTGC 58.238 37.500 12.91 12.91 39.86 3.68
1424 1724 7.917505 AGTTTGAGCAATAAAGACTTGACTTTG 59.082 33.333 7.99 0.00 39.86 2.77
1495 1795 3.347158 TCCAGCCTGGATCCAAGAT 57.653 52.632 17.00 5.40 42.67 2.40
1568 1868 3.358076 GAGCCAAGACGAGGTCCGG 62.358 68.421 0.00 0.00 43.93 5.14
1682 1982 2.275380 AATGGGCGACACCAAAGGC 61.275 57.895 0.00 0.00 45.13 4.35
1708 2008 1.153823 CGTGAAGCGGTCGGAGAAT 60.154 57.895 0.00 0.00 39.69 2.40
1925 2225 0.955428 GCCATGCCTTTCGTGTCTGA 60.955 55.000 0.00 0.00 0.00 3.27
1946 2246 1.279840 GGTTGAGTGCGAACTGTGC 59.720 57.895 0.00 0.00 0.00 4.57
1975 2275 3.703556 TGGAGTTGGCAAACTGATTGAAA 59.296 39.130 12.33 0.00 46.84 2.69
2090 2390 3.114616 CTCGTTGCCAGCGGTCTG 61.115 66.667 0.00 0.00 40.02 3.51
2196 2496 1.167851 CACCACACACCCATTGCTAG 58.832 55.000 0.00 0.00 0.00 3.42
2359 2667 1.066430 GCAGAGGTCGGGTGTAATTGA 60.066 52.381 0.00 0.00 0.00 2.57
2360 2668 1.338674 TGCAGAGGTCGGGTGTAATTG 60.339 52.381 0.00 0.00 0.00 2.32
2366 2674 1.043816 ATAGATGCAGAGGTCGGGTG 58.956 55.000 0.00 0.00 0.00 4.61
2368 2676 3.157881 TCTTATAGATGCAGAGGTCGGG 58.842 50.000 0.00 0.00 0.00 5.14
2394 2706 6.605471 TGTGTGTATCCTAGATGTCTTTGT 57.395 37.500 0.00 0.00 0.00 2.83
2401 2713 4.984785 CGTTGGATGTGTGTATCCTAGATG 59.015 45.833 6.37 0.00 45.59 2.90
2404 2716 3.383505 TCCGTTGGATGTGTGTATCCTAG 59.616 47.826 6.37 0.00 45.59 3.02
2405 2717 3.367321 TCCGTTGGATGTGTGTATCCTA 58.633 45.455 6.37 0.00 45.59 2.94
2432 2744 0.175989 CTGGACTTAACTCCTCGGCC 59.824 60.000 0.00 0.00 0.00 6.13
2433 2745 0.896226 ACTGGACTTAACTCCTCGGC 59.104 55.000 3.23 0.00 0.00 5.54
2435 2747 3.839293 CTCAACTGGACTTAACTCCTCG 58.161 50.000 3.23 0.00 0.00 4.63
2436 2748 3.006967 TGCTCAACTGGACTTAACTCCTC 59.993 47.826 3.23 0.00 0.00 3.71
2438 2750 3.006967 TCTGCTCAACTGGACTTAACTCC 59.993 47.826 0.00 0.00 0.00 3.85
2485 2797 0.676782 CCGAACCAAACAGGGCCTAG 60.677 60.000 5.28 3.22 43.89 3.02
2487 2799 2.115266 CCGAACCAAACAGGGCCT 59.885 61.111 0.00 0.00 43.89 5.19
2488 2800 3.680786 GCCGAACCAAACAGGGCC 61.681 66.667 0.00 0.00 43.89 5.80
2489 2801 2.597510 AGCCGAACCAAACAGGGC 60.598 61.111 0.00 0.00 43.89 5.19
2490 2802 1.528309 ACAGCCGAACCAAACAGGG 60.528 57.895 0.00 0.00 43.89 4.45
2491 2803 1.654220 CACAGCCGAACCAAACAGG 59.346 57.895 0.00 0.00 45.67 4.00
2492 2804 0.817634 TCCACAGCCGAACCAAACAG 60.818 55.000 0.00 0.00 0.00 3.16
2493 2805 0.179004 ATCCACAGCCGAACCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
2494 2806 0.958822 AATCCACAGCCGAACCAAAC 59.041 50.000 0.00 0.00 0.00 2.93
2495 2807 1.611491 GAAATCCACAGCCGAACCAAA 59.389 47.619 0.00 0.00 0.00 3.28
2496 2808 1.202879 AGAAATCCACAGCCGAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
2497 2809 0.400213 AGAAATCCACAGCCGAACCA 59.600 50.000 0.00 0.00 0.00 3.67
2498 2810 2.396590 TAGAAATCCACAGCCGAACC 57.603 50.000 0.00 0.00 0.00 3.62
2499 2811 4.723248 CTTTTAGAAATCCACAGCCGAAC 58.277 43.478 0.00 0.00 0.00 3.95
2500 2812 3.190535 GCTTTTAGAAATCCACAGCCGAA 59.809 43.478 0.00 0.00 0.00 4.30
2501 2813 2.747446 GCTTTTAGAAATCCACAGCCGA 59.253 45.455 0.00 0.00 0.00 5.54
2502 2814 2.487762 TGCTTTTAGAAATCCACAGCCG 59.512 45.455 0.00 0.00 0.00 5.52
2503 2815 3.674410 GCTGCTTTTAGAAATCCACAGCC 60.674 47.826 0.00 0.00 42.58 4.85
2504 2816 3.505836 GCTGCTTTTAGAAATCCACAGC 58.494 45.455 0.00 0.00 42.00 4.40
2505 2817 4.217118 ACAGCTGCTTTTAGAAATCCACAG 59.783 41.667 15.27 0.00 0.00 3.66
2506 2818 4.022935 CACAGCTGCTTTTAGAAATCCACA 60.023 41.667 15.27 0.00 0.00 4.17
2507 2819 4.216257 TCACAGCTGCTTTTAGAAATCCAC 59.784 41.667 15.27 0.00 0.00 4.02
2508 2820 4.397420 TCACAGCTGCTTTTAGAAATCCA 58.603 39.130 15.27 0.00 0.00 3.41
2509 2821 5.376854 TTCACAGCTGCTTTTAGAAATCC 57.623 39.130 15.27 0.00 0.00 3.01
2510 2822 7.698836 TTTTTCACAGCTGCTTTTAGAAATC 57.301 32.000 15.27 0.00 0.00 2.17
2511 2823 8.146412 AGATTTTTCACAGCTGCTTTTAGAAAT 58.854 29.630 15.27 10.98 0.00 2.17
2512 2824 7.491682 AGATTTTTCACAGCTGCTTTTAGAAA 58.508 30.769 15.27 11.50 0.00 2.52
2513 2825 7.042797 AGATTTTTCACAGCTGCTTTTAGAA 57.957 32.000 15.27 5.96 0.00 2.10
2514 2826 6.639632 AGATTTTTCACAGCTGCTTTTAGA 57.360 33.333 15.27 0.00 0.00 2.10
2515 2827 8.976986 AATAGATTTTTCACAGCTGCTTTTAG 57.023 30.769 15.27 0.00 0.00 1.85
2517 2829 9.362539 CATAATAGATTTTTCACAGCTGCTTTT 57.637 29.630 15.27 4.34 0.00 2.27
2518 2830 7.977853 CCATAATAGATTTTTCACAGCTGCTTT 59.022 33.333 15.27 0.00 0.00 3.51
2519 2831 7.340232 TCCATAATAGATTTTTCACAGCTGCTT 59.660 33.333 15.27 0.00 0.00 3.91
2520 2832 6.830324 TCCATAATAGATTTTTCACAGCTGCT 59.170 34.615 15.27 0.00 0.00 4.24
2521 2833 7.031226 TCCATAATAGATTTTTCACAGCTGC 57.969 36.000 15.27 0.00 0.00 5.25
2522 2834 9.859427 TTTTCCATAATAGATTTTTCACAGCTG 57.141 29.630 13.48 13.48 0.00 4.24
2552 2864 9.956720 CCAAATGACCTATATCTTTTTCACATC 57.043 33.333 0.00 0.00 0.00 3.06
2553 2865 8.416329 GCCAAATGACCTATATCTTTTTCACAT 58.584 33.333 0.00 0.00 0.00 3.21
2554 2866 7.395772 TGCCAAATGACCTATATCTTTTTCACA 59.604 33.333 0.00 0.00 0.00 3.58
2555 2867 7.771183 TGCCAAATGACCTATATCTTTTTCAC 58.229 34.615 0.00 0.00 0.00 3.18
2556 2868 7.953005 TGCCAAATGACCTATATCTTTTTCA 57.047 32.000 0.00 0.00 0.00 2.69
2557 2869 9.087424 GTTTGCCAAATGACCTATATCTTTTTC 57.913 33.333 0.00 0.00 0.00 2.29
2558 2870 8.040727 GGTTTGCCAAATGACCTATATCTTTTT 58.959 33.333 0.00 0.00 34.09 1.94
2559 2871 7.180051 TGGTTTGCCAAATGACCTATATCTTTT 59.820 33.333 0.00 0.00 42.83 2.27
2560 2872 6.667414 TGGTTTGCCAAATGACCTATATCTTT 59.333 34.615 0.00 0.00 42.83 2.52
2561 2873 6.194235 TGGTTTGCCAAATGACCTATATCTT 58.806 36.000 0.00 0.00 42.83 2.40
2562 2874 5.765510 TGGTTTGCCAAATGACCTATATCT 58.234 37.500 0.00 0.00 42.83 1.98
2563 2875 5.507985 GCTGGTTTGCCAAATGACCTATATC 60.508 44.000 0.00 0.00 45.51 1.63
2564 2876 4.342092 GCTGGTTTGCCAAATGACCTATAT 59.658 41.667 0.00 0.00 45.51 0.86
2565 2877 3.699038 GCTGGTTTGCCAAATGACCTATA 59.301 43.478 0.00 0.00 45.51 1.31
2566 2878 2.497273 GCTGGTTTGCCAAATGACCTAT 59.503 45.455 0.00 0.00 45.51 2.57
2567 2879 1.892474 GCTGGTTTGCCAAATGACCTA 59.108 47.619 0.00 0.00 45.51 3.08
2568 2880 0.681175 GCTGGTTTGCCAAATGACCT 59.319 50.000 0.00 0.00 45.51 3.85
2569 2881 0.681175 AGCTGGTTTGCCAAATGACC 59.319 50.000 0.00 0.00 45.51 4.02
2570 2882 1.340889 TCAGCTGGTTTGCCAAATGAC 59.659 47.619 15.13 0.00 45.51 3.06
2571 2883 1.702182 TCAGCTGGTTTGCCAAATGA 58.298 45.000 15.13 0.00 45.51 2.57
2572 2884 2.754946 ATCAGCTGGTTTGCCAAATG 57.245 45.000 15.13 0.00 45.51 2.32
2573 2885 3.164268 TGTATCAGCTGGTTTGCCAAAT 58.836 40.909 15.13 0.00 45.51 2.32
2574 2886 2.557924 CTGTATCAGCTGGTTTGCCAAA 59.442 45.455 15.13 0.00 45.51 3.28
2575 2887 2.161855 CTGTATCAGCTGGTTTGCCAA 58.838 47.619 15.13 0.00 45.51 4.52
2576 2888 1.825090 CTGTATCAGCTGGTTTGCCA 58.175 50.000 15.13 1.11 43.73 4.92
2587 2899 7.223387 GGCCAAAATATGAAAAAGCTGTATCAG 59.777 37.037 0.00 0.00 34.12 2.90
2588 2900 7.041107 GGCCAAAATATGAAAAAGCTGTATCA 58.959 34.615 0.00 0.00 0.00 2.15
2589 2901 6.479990 GGGCCAAAATATGAAAAAGCTGTATC 59.520 38.462 4.39 0.00 0.00 2.24
2590 2902 6.348498 GGGCCAAAATATGAAAAAGCTGTAT 58.652 36.000 4.39 0.00 0.00 2.29
2591 2903 5.623368 CGGGCCAAAATATGAAAAAGCTGTA 60.623 40.000 4.39 0.00 0.00 2.74
2592 2904 4.578871 GGGCCAAAATATGAAAAAGCTGT 58.421 39.130 4.39 0.00 0.00 4.40
2593 2905 3.618150 CGGGCCAAAATATGAAAAAGCTG 59.382 43.478 4.39 0.00 0.00 4.24
2594 2906 3.860641 CGGGCCAAAATATGAAAAAGCT 58.139 40.909 4.39 0.00 0.00 3.74
2595 2907 2.351418 GCGGGCCAAAATATGAAAAAGC 59.649 45.455 4.39 0.00 0.00 3.51
2596 2908 3.594134 TGCGGGCCAAAATATGAAAAAG 58.406 40.909 4.39 0.00 0.00 2.27
2597 2909 3.685139 TGCGGGCCAAAATATGAAAAA 57.315 38.095 4.39 0.00 0.00 1.94
2598 2910 3.330267 GTTGCGGGCCAAAATATGAAAA 58.670 40.909 4.39 0.00 34.68 2.29
2599 2911 2.672478 CGTTGCGGGCCAAAATATGAAA 60.672 45.455 4.39 0.00 34.68 2.69
2600 2912 1.135257 CGTTGCGGGCCAAAATATGAA 60.135 47.619 4.39 0.00 34.68 2.57
2601 2913 0.453793 CGTTGCGGGCCAAAATATGA 59.546 50.000 4.39 0.00 34.68 2.15
2602 2914 0.527385 CCGTTGCGGGCCAAAATATG 60.527 55.000 4.39 0.00 44.15 1.78
2603 2915 1.813192 CCGTTGCGGGCCAAAATAT 59.187 52.632 4.39 0.00 44.15 1.28
2604 2916 3.279183 CCGTTGCGGGCCAAAATA 58.721 55.556 4.39 0.00 44.15 1.40
2611 2923 6.508200 TCAAAATATGATTCCGTTGCGGGC 62.508 45.833 7.76 0.00 39.42 6.13
2612 2924 3.066064 TCAAAATATGATTCCGTTGCGGG 59.934 43.478 7.76 0.00 39.42 6.13
2613 2925 4.285807 TCAAAATATGATTCCGTTGCGG 57.714 40.909 0.49 0.49 39.98 5.69
2614 2926 6.624710 TTTTCAAAATATGATTCCGTTGCG 57.375 33.333 0.00 0.00 38.03 4.85
2615 2927 7.739911 GTGTTTTTCAAAATATGATTCCGTTGC 59.260 33.333 0.00 0.00 38.03 4.17
2616 2928 7.944120 CGTGTTTTTCAAAATATGATTCCGTTG 59.056 33.333 0.00 0.00 38.03 4.10
2617 2929 7.650104 ACGTGTTTTTCAAAATATGATTCCGTT 59.350 29.630 7.70 0.00 38.03 4.44
2618 2930 7.142680 ACGTGTTTTTCAAAATATGATTCCGT 58.857 30.769 7.70 0.00 38.03 4.69
2619 2931 7.324856 TGACGTGTTTTTCAAAATATGATTCCG 59.675 33.333 0.00 0.00 38.03 4.30
2620 2932 8.514136 TGACGTGTTTTTCAAAATATGATTCC 57.486 30.769 0.00 0.00 38.03 3.01
2621 2933 9.941991 CATGACGTGTTTTTCAAAATATGATTC 57.058 29.630 0.00 0.00 38.03 2.52
2622 2934 8.924691 CCATGACGTGTTTTTCAAAATATGATT 58.075 29.630 0.00 0.00 38.03 2.57
2623 2935 7.545265 CCCATGACGTGTTTTTCAAAATATGAT 59.455 33.333 0.00 0.00 38.03 2.45
2624 2936 6.865726 CCCATGACGTGTTTTTCAAAATATGA 59.134 34.615 0.00 0.00 35.85 2.15
2625 2937 6.400940 GCCCATGACGTGTTTTTCAAAATATG 60.401 38.462 0.00 0.78 33.76 1.78
2626 2938 5.637387 GCCCATGACGTGTTTTTCAAAATAT 59.363 36.000 0.00 0.00 0.00 1.28
2627 2939 4.985409 GCCCATGACGTGTTTTTCAAAATA 59.015 37.500 0.00 0.00 0.00 1.40
2628 2940 3.807071 GCCCATGACGTGTTTTTCAAAAT 59.193 39.130 0.00 0.00 0.00 1.82
2629 2941 3.118956 AGCCCATGACGTGTTTTTCAAAA 60.119 39.130 0.00 0.00 0.00 2.44
2630 2942 2.428890 AGCCCATGACGTGTTTTTCAAA 59.571 40.909 0.00 0.00 0.00 2.69
2631 2943 2.028130 AGCCCATGACGTGTTTTTCAA 58.972 42.857 0.00 0.00 0.00 2.69
2632 2944 1.336440 CAGCCCATGACGTGTTTTTCA 59.664 47.619 0.00 0.00 0.00 2.69
2633 2945 1.930371 GCAGCCCATGACGTGTTTTTC 60.930 52.381 0.00 0.00 0.00 2.29
2634 2946 0.031994 GCAGCCCATGACGTGTTTTT 59.968 50.000 0.00 0.00 0.00 1.94
2635 2947 0.823356 AGCAGCCCATGACGTGTTTT 60.823 50.000 0.00 0.00 0.00 2.43
2636 2948 0.823356 AAGCAGCCCATGACGTGTTT 60.823 50.000 0.00 0.00 0.00 2.83
2637 2949 1.228245 AAGCAGCCCATGACGTGTT 60.228 52.632 0.00 0.00 0.00 3.32
2638 2950 1.672356 GAAGCAGCCCATGACGTGT 60.672 57.895 0.00 0.00 0.00 4.49
2639 2951 2.401766 GGAAGCAGCCCATGACGTG 61.402 63.158 0.00 0.00 0.00 4.49
2640 2952 2.045926 GGAAGCAGCCCATGACGT 60.046 61.111 0.00 0.00 0.00 4.34
2641 2953 3.197790 CGGAAGCAGCCCATGACG 61.198 66.667 0.00 0.00 0.00 4.35
2653 2965 3.923017 AATCTGAACCAAAAGCGGAAG 57.077 42.857 0.00 0.00 0.00 3.46
2654 2966 4.367450 CAAAATCTGAACCAAAAGCGGAA 58.633 39.130 0.00 0.00 0.00 4.30
2655 2967 3.243704 CCAAAATCTGAACCAAAAGCGGA 60.244 43.478 0.00 0.00 0.00 5.54
2656 2968 3.059166 CCAAAATCTGAACCAAAAGCGG 58.941 45.455 0.00 0.00 0.00 5.52
2657 2969 2.476241 GCCAAAATCTGAACCAAAAGCG 59.524 45.455 0.00 0.00 0.00 4.68
2658 2970 3.465871 TGCCAAAATCTGAACCAAAAGC 58.534 40.909 0.00 0.00 0.00 3.51
2659 2971 3.495753 GCTGCCAAAATCTGAACCAAAAG 59.504 43.478 0.00 0.00 0.00 2.27
2660 2972 3.465871 GCTGCCAAAATCTGAACCAAAA 58.534 40.909 0.00 0.00 0.00 2.44
2661 2973 2.545532 CGCTGCCAAAATCTGAACCAAA 60.546 45.455 0.00 0.00 0.00 3.28
2662 2974 1.000385 CGCTGCCAAAATCTGAACCAA 60.000 47.619 0.00 0.00 0.00 3.67
2663 2975 0.597568 CGCTGCCAAAATCTGAACCA 59.402 50.000 0.00 0.00 0.00 3.67
2664 2976 0.109132 CCGCTGCCAAAATCTGAACC 60.109 55.000 0.00 0.00 0.00 3.62
2665 2977 0.881118 TCCGCTGCCAAAATCTGAAC 59.119 50.000 0.00 0.00 0.00 3.18
2666 2978 1.838112 ATCCGCTGCCAAAATCTGAA 58.162 45.000 0.00 0.00 0.00 3.02
2667 2979 1.838112 AATCCGCTGCCAAAATCTGA 58.162 45.000 0.00 0.00 0.00 3.27
2668 2980 2.165030 AGAAATCCGCTGCCAAAATCTG 59.835 45.455 0.00 0.00 0.00 2.90
2669 2981 2.450476 AGAAATCCGCTGCCAAAATCT 58.550 42.857 0.00 0.00 0.00 2.40
2670 2982 2.947448 AGAAATCCGCTGCCAAAATC 57.053 45.000 0.00 0.00 0.00 2.17
2671 2983 3.620488 TCTAGAAATCCGCTGCCAAAAT 58.380 40.909 0.00 0.00 0.00 1.82
2672 2984 3.066291 TCTAGAAATCCGCTGCCAAAA 57.934 42.857 0.00 0.00 0.00 2.44
2673 2985 2.779755 TCTAGAAATCCGCTGCCAAA 57.220 45.000 0.00 0.00 0.00 3.28
2674 2986 2.779755 TTCTAGAAATCCGCTGCCAA 57.220 45.000 1.68 0.00 0.00 4.52
2675 2987 2.803133 CGATTCTAGAAATCCGCTGCCA 60.803 50.000 9.71 0.00 0.00 4.92
2676 2988 1.795286 CGATTCTAGAAATCCGCTGCC 59.205 52.381 9.71 0.00 0.00 4.85
2677 2989 1.795286 CCGATTCTAGAAATCCGCTGC 59.205 52.381 9.71 0.00 0.00 5.25
2678 2990 3.371102 TCCGATTCTAGAAATCCGCTG 57.629 47.619 9.71 2.99 0.00 5.18
2679 2991 4.561105 GAATCCGATTCTAGAAATCCGCT 58.439 43.478 9.71 0.00 36.37 5.52
2680 2992 4.912528 GAATCCGATTCTAGAAATCCGC 57.087 45.455 9.71 0.00 36.37 5.54
2691 3003 1.943340 GAACCCAGCAGAATCCGATTC 59.057 52.381 12.51 12.51 39.56 2.52
2692 3004 1.743772 CGAACCCAGCAGAATCCGATT 60.744 52.381 0.00 0.00 0.00 3.34
2693 3005 0.179073 CGAACCCAGCAGAATCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
2694 3006 1.218047 CGAACCCAGCAGAATCCGA 59.782 57.895 0.00 0.00 0.00 4.55
2695 3007 2.464459 GCGAACCCAGCAGAATCCG 61.464 63.158 0.00 0.00 34.19 4.18
2696 3008 2.115291 GGCGAACCCAGCAGAATCC 61.115 63.158 0.00 0.00 36.08 3.01
2697 3009 3.502572 GGCGAACCCAGCAGAATC 58.497 61.111 0.00 0.00 36.08 2.52
2707 3019 2.467566 TCTGAACTAAAGGGCGAACC 57.532 50.000 0.00 0.00 40.67 3.62
2708 3020 4.093556 CAGAATCTGAACTAAAGGGCGAAC 59.906 45.833 3.77 0.00 32.44 3.95
2709 3021 4.253685 CAGAATCTGAACTAAAGGGCGAA 58.746 43.478 3.77 0.00 32.44 4.70
2710 3022 3.861840 CAGAATCTGAACTAAAGGGCGA 58.138 45.455 3.77 0.00 32.44 5.54
2711 3023 2.352960 GCAGAATCTGAACTAAAGGGCG 59.647 50.000 15.38 0.00 32.44 6.13
2712 3024 3.376546 CAGCAGAATCTGAACTAAAGGGC 59.623 47.826 15.38 0.00 36.19 5.19
2713 3025 3.376546 GCAGCAGAATCTGAACTAAAGGG 59.623 47.826 15.38 0.00 36.19 3.95
2714 3026 3.063180 CGCAGCAGAATCTGAACTAAAGG 59.937 47.826 15.38 0.00 36.19 3.11
2715 3027 4.256140 CGCAGCAGAATCTGAACTAAAG 57.744 45.455 15.38 0.00 36.19 1.85
2733 3045 1.029408 ATGGATTTTACTGCCGCGCA 61.029 50.000 8.75 1.04 36.92 6.09
2734 3046 0.317020 GATGGATTTTACTGCCGCGC 60.317 55.000 0.00 0.00 0.00 6.86
2735 3047 0.042188 CGATGGATTTTACTGCCGCG 60.042 55.000 0.00 0.00 0.00 6.46
2736 3048 1.295792 TCGATGGATTTTACTGCCGC 58.704 50.000 0.00 0.00 0.00 6.53
2737 3049 5.666969 TTTATCGATGGATTTTACTGCCG 57.333 39.130 8.54 0.00 34.00 5.69
2738 3050 7.027778 ACTTTTATCGATGGATTTTACTGCC 57.972 36.000 8.54 0.00 34.00 4.85
2739 3051 8.181573 TCAACTTTTATCGATGGATTTTACTGC 58.818 33.333 8.54 0.00 34.00 4.40
2742 3054 9.285770 GGTTCAACTTTTATCGATGGATTTTAC 57.714 33.333 8.54 0.00 34.00 2.01
2743 3055 9.015367 TGGTTCAACTTTTATCGATGGATTTTA 57.985 29.630 8.54 0.00 34.00 1.52
2744 3056 7.891561 TGGTTCAACTTTTATCGATGGATTTT 58.108 30.769 8.54 0.00 34.00 1.82
2745 3057 7.461182 TGGTTCAACTTTTATCGATGGATTT 57.539 32.000 8.54 0.00 34.00 2.17
2746 3058 7.461182 TTGGTTCAACTTTTATCGATGGATT 57.539 32.000 8.54 0.00 34.00 3.01
2747 3059 7.040062 TGTTTGGTTCAACTTTTATCGATGGAT 60.040 33.333 8.54 0.00 36.65 3.41
2748 3060 6.263392 TGTTTGGTTCAACTTTTATCGATGGA 59.737 34.615 8.54 0.00 0.00 3.41
2749 3061 6.442952 TGTTTGGTTCAACTTTTATCGATGG 58.557 36.000 8.54 0.00 0.00 3.51
2750 3062 7.359595 TCTGTTTGGTTCAACTTTTATCGATG 58.640 34.615 8.54 0.00 0.00 3.84
2751 3063 7.504924 TCTGTTTGGTTCAACTTTTATCGAT 57.495 32.000 2.16 2.16 0.00 3.59
2752 3064 6.512741 GCTCTGTTTGGTTCAACTTTTATCGA 60.513 38.462 0.00 0.00 0.00 3.59
2753 3065 5.625311 GCTCTGTTTGGTTCAACTTTTATCG 59.375 40.000 0.00 0.00 0.00 2.92
2754 3066 5.920840 GGCTCTGTTTGGTTCAACTTTTATC 59.079 40.000 0.00 0.00 0.00 1.75
2755 3067 5.598417 AGGCTCTGTTTGGTTCAACTTTTAT 59.402 36.000 0.00 0.00 0.00 1.40
2756 3068 4.953579 AGGCTCTGTTTGGTTCAACTTTTA 59.046 37.500 0.00 0.00 0.00 1.52
2757 3069 3.769300 AGGCTCTGTTTGGTTCAACTTTT 59.231 39.130 0.00 0.00 0.00 2.27
2758 3070 3.365472 AGGCTCTGTTTGGTTCAACTTT 58.635 40.909 0.00 0.00 0.00 2.66
2759 3071 3.018423 AGGCTCTGTTTGGTTCAACTT 57.982 42.857 0.00 0.00 0.00 2.66
2760 3072 2.736670 AGGCTCTGTTTGGTTCAACT 57.263 45.000 0.00 0.00 0.00 3.16
2761 3073 3.740115 TCTAGGCTCTGTTTGGTTCAAC 58.260 45.455 0.00 0.00 0.00 3.18
2762 3074 4.102524 TCTTCTAGGCTCTGTTTGGTTCAA 59.897 41.667 0.00 0.00 0.00 2.69
2763 3075 3.646162 TCTTCTAGGCTCTGTTTGGTTCA 59.354 43.478 0.00 0.00 0.00 3.18
2764 3076 4.273148 TCTTCTAGGCTCTGTTTGGTTC 57.727 45.455 0.00 0.00 0.00 3.62
2765 3077 4.646572 CTTCTTCTAGGCTCTGTTTGGTT 58.353 43.478 0.00 0.00 0.00 3.67
2766 3078 3.558109 GCTTCTTCTAGGCTCTGTTTGGT 60.558 47.826 0.00 0.00 0.00 3.67
2767 3079 3.006247 GCTTCTTCTAGGCTCTGTTTGG 58.994 50.000 0.00 0.00 0.00 3.28
2768 3080 3.936564 AGCTTCTTCTAGGCTCTGTTTG 58.063 45.455 0.00 0.00 0.00 2.93
2769 3081 5.020132 TCTAGCTTCTTCTAGGCTCTGTTT 58.980 41.667 0.00 0.00 37.30 2.83
2770 3082 4.401202 GTCTAGCTTCTTCTAGGCTCTGTT 59.599 45.833 0.00 0.00 38.06 3.16
2771 3083 3.951680 GTCTAGCTTCTTCTAGGCTCTGT 59.048 47.826 0.00 0.00 38.06 3.41
2772 3084 3.317993 GGTCTAGCTTCTTCTAGGCTCTG 59.682 52.174 0.00 0.00 40.26 3.35
2773 3085 3.562182 GGTCTAGCTTCTTCTAGGCTCT 58.438 50.000 0.00 0.00 40.26 4.09
2774 3086 2.626266 GGGTCTAGCTTCTTCTAGGCTC 59.374 54.545 0.00 0.00 40.26 4.70
2775 3087 2.023888 TGGGTCTAGCTTCTTCTAGGCT 60.024 50.000 0.00 0.00 40.26 4.58
2776 3088 2.364002 CTGGGTCTAGCTTCTTCTAGGC 59.636 54.545 0.00 0.00 39.81 3.93
2777 3089 2.364002 GCTGGGTCTAGCTTCTTCTAGG 59.636 54.545 0.00 0.00 40.52 3.02
2778 3090 3.726291 GCTGGGTCTAGCTTCTTCTAG 57.274 52.381 0.00 0.00 40.52 2.43
2836 3148 4.455877 AGAAGAGTGAACCGCCATTTTTAG 59.544 41.667 0.00 0.00 0.00 1.85
2845 3157 2.251893 CGAGTTAGAAGAGTGAACCGC 58.748 52.381 0.00 0.00 0.00 5.68
2865 3177 5.573337 ATTTTTAGACTTCAGCCAGATGC 57.427 39.130 0.00 0.00 41.71 3.91
2871 3183 5.642491 ACCTAACGATTTTTAGACTTCAGCC 59.358 40.000 0.00 0.00 31.60 4.85
2873 3185 6.534934 GCACCTAACGATTTTTAGACTTCAG 58.465 40.000 0.00 0.00 31.60 3.02
2874 3186 5.119588 CGCACCTAACGATTTTTAGACTTCA 59.880 40.000 0.00 0.00 31.60 3.02
2885 3198 1.877443 AGTTTTGCGCACCTAACGATT 59.123 42.857 11.12 0.00 0.00 3.34
2911 3224 0.107312 AGGCGTCTACGAGCTAAGGA 60.107 55.000 6.71 0.00 43.02 3.36
2919 3232 3.648339 AGTGTTTTTAGGCGTCTACGA 57.352 42.857 6.71 0.00 43.02 3.43
2921 3234 3.364664 GCCAAGTGTTTTTAGGCGTCTAC 60.365 47.826 0.00 0.00 35.42 2.59
2922 3235 2.809696 GCCAAGTGTTTTTAGGCGTCTA 59.190 45.455 0.00 0.00 35.42 2.59
2923 3236 1.607148 GCCAAGTGTTTTTAGGCGTCT 59.393 47.619 0.00 0.00 35.42 4.18
2935 3249 3.953775 CGGGTGGAGGCCAAGTGT 61.954 66.667 5.01 0.00 34.18 3.55
2950 3264 2.334838 CCTCAACTTTTACTCGGACGG 58.665 52.381 0.00 0.00 0.00 4.79
2952 3266 2.762745 TGCCTCAACTTTTACTCGGAC 58.237 47.619 0.00 0.00 0.00 4.79
2953 3267 3.135994 GTTGCCTCAACTTTTACTCGGA 58.864 45.455 2.71 0.00 40.73 4.55
2968 3284 1.228459 GGGGGTCGAAAAGTTGCCT 60.228 57.895 0.00 0.00 0.00 4.75
3002 3321 2.125269 GGTAGGTGCGTTGGCGAT 60.125 61.111 0.00 0.00 44.10 4.58
3009 3328 0.902531 ATAGTTGCTGGTAGGTGCGT 59.097 50.000 0.00 0.00 0.00 5.24
3010 3329 1.571919 GATAGTTGCTGGTAGGTGCG 58.428 55.000 0.00 0.00 0.00 5.34
3017 3336 0.328258 GGTGGTGGATAGTTGCTGGT 59.672 55.000 0.00 0.00 0.00 4.00
3020 3339 0.912486 GGAGGTGGTGGATAGTTGCT 59.088 55.000 0.00 0.00 0.00 3.91
3023 3342 2.919602 ACAATGGAGGTGGTGGATAGTT 59.080 45.455 0.00 0.00 0.00 2.24
3034 3353 3.206150 GCGATGATGTAACAATGGAGGT 58.794 45.455 0.00 0.00 0.00 3.85
3036 3355 3.470709 AGGCGATGATGTAACAATGGAG 58.529 45.455 0.00 0.00 0.00 3.86
3041 3360 4.096231 CCAAATGAGGCGATGATGTAACAA 59.904 41.667 0.00 0.00 0.00 2.83
3042 3361 3.627123 CCAAATGAGGCGATGATGTAACA 59.373 43.478 0.00 0.00 0.00 2.41
3059 3378 0.190815 AAGGGTGTCAAGGGCCAAAT 59.809 50.000 6.18 0.00 0.00 2.32
3071 3390 3.575351 GACTCGCGCAGAAGGGTGT 62.575 63.158 8.75 0.00 39.06 4.16
3073 3392 4.070552 GGACTCGCGCAGAAGGGT 62.071 66.667 8.75 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.