Multiple sequence alignment - TraesCS2A01G573400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G573400 chr2A 100.000 3706 0 0 1 3706 769002029 769005734 0.000000e+00 6844.0
1 TraesCS2A01G573400 chr2A 80.966 683 129 1 1963 2644 769020848 769021530 1.170000e-149 540.0
2 TraesCS2A01G573400 chr2A 79.798 594 120 0 1986 2579 769145322 769145915 2.040000e-117 433.0
3 TraesCS2A01G573400 chr2A 93.805 226 14 0 1373 1598 234109033 234108808 1.270000e-89 340.0
4 TraesCS2A01G573400 chr2A 91.250 240 21 0 1373 1612 214713557 214713796 9.920000e-86 327.0
5 TraesCS2A01G573400 chr2A 91.447 152 2 2 3552 3703 769016458 769016598 8.120000e-47 198.0
6 TraesCS2A01G573400 chr2A 82.110 218 33 4 1081 1295 769144924 769145138 8.180000e-42 182.0
7 TraesCS2A01G573400 chr2A 78.829 222 37 8 1082 1295 769020358 769020577 1.390000e-29 141.0
8 TraesCS2A01G573400 chr2A 77.966 236 37 10 1082 1302 769473973 769473738 2.320000e-27 134.0
9 TraesCS2A01G573400 chr2D 90.217 1380 79 18 1599 2934 643878684 643880051 0.000000e+00 1749.0
10 TraesCS2A01G573400 chr2D 85.160 721 68 20 665 1365 643877985 643878686 0.000000e+00 702.0
11 TraesCS2A01G573400 chr2D 95.500 400 11 3 269 666 643877549 643877943 1.880000e-177 632.0
12 TraesCS2A01G573400 chr2D 81.081 777 132 11 1956 2719 643901665 643902439 1.140000e-169 606.0
13 TraesCS2A01G573400 chr2D 79.968 634 121 3 1986 2613 644016788 644017421 2.610000e-126 462.0
14 TraesCS2A01G573400 chr2D 95.909 220 5 3 1 218 643876932 643877149 1.640000e-93 353.0
15 TraesCS2A01G573400 chr2D 76.185 823 108 39 2933 3706 643880096 643880879 1.640000e-93 353.0
16 TraesCS2A01G573400 chr2D 78.829 222 37 7 1082 1295 643901092 643901311 1.390000e-29 141.0
17 TraesCS2A01G573400 chr2D 77.350 234 33 12 1082 1296 644220295 644220063 1.810000e-23 121.0
18 TraesCS2A01G573400 chr2D 97.917 48 1 0 215 262 643877471 643877518 2.370000e-12 84.2
19 TraesCS2A01G573400 chr2B 89.437 1155 76 15 1642 2752 793169524 793168372 0.000000e+00 1415.0
20 TraesCS2A01G573400 chr2B 90.726 647 48 5 666 1300 793170249 793169603 0.000000e+00 852.0
21 TraesCS2A01G573400 chr2B 81.214 692 125 5 1956 2644 793141613 793140924 1.500000e-153 553.0
22 TraesCS2A01G573400 chr2B 78.989 633 127 2 1986 2612 793034678 793034046 9.510000e-116 427.0
23 TraesCS2A01G573400 chr2B 93.458 214 10 4 1 212 793171075 793170864 7.730000e-82 315.0
24 TraesCS2A01G573400 chr2B 75.597 754 100 33 2987 3706 793168333 793167630 2.800000e-76 296.0
25 TraesCS2A01G573400 chr2B 87.500 232 18 5 443 666 793170522 793170294 1.320000e-64 257.0
26 TraesCS2A01G573400 chr2B 82.569 218 32 5 1081 1295 793035076 793034862 1.760000e-43 187.0
27 TraesCS2A01G573400 chr2B 83.700 227 7 8 209 405 793170753 793170527 1.760000e-43 187.0
28 TraesCS2A01G573400 chr2B 80.090 221 36 6 1082 1295 793142141 793141922 1.380000e-34 158.0
29 TraesCS2A01G573400 chr2B 86.719 128 17 0 1733 1860 793034808 793034681 3.860000e-30 143.0
30 TraesCS2A01G573400 chr4A 92.083 240 19 0 1361 1600 567704601 567704840 4.580000e-89 339.0
31 TraesCS2A01G573400 chr1D 92.920 226 16 0 1373 1598 309071974 309072199 2.760000e-86 329.0
32 TraesCS2A01G573400 chrUn 92.478 226 17 0 1373 1598 48037979 48038204 1.280000e-84 324.0
33 TraesCS2A01G573400 chrUn 91.845 233 17 2 1373 1605 248181408 248181178 1.280000e-84 324.0
34 TraesCS2A01G573400 chr4B 91.845 233 17 2 1373 1605 3403674 3403444 1.280000e-84 324.0
35 TraesCS2A01G573400 chr4B 91.845 233 17 2 1373 1605 3438633 3438403 1.280000e-84 324.0
36 TraesCS2A01G573400 chr4B 91.845 233 17 2 1373 1605 3491118 3490888 1.280000e-84 324.0
37 TraesCS2A01G573400 chr3D 76.037 217 42 8 2318 2529 600820068 600819857 1.820000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G573400 chr2A 769002029 769005734 3705 False 6844.000000 6844 100.000000 1 3706 1 chr2A.!!$F2 3705
1 TraesCS2A01G573400 chr2A 769144924 769145915 991 False 307.500000 433 80.954000 1081 2579 2 chr2A.!!$F4 1498
2 TraesCS2A01G573400 chr2A 769016458 769021530 5072 False 293.000000 540 83.747333 1082 3703 3 chr2A.!!$F3 2621
3 TraesCS2A01G573400 chr2D 643876932 643880879 3947 False 645.533333 1749 90.148000 1 3706 6 chr2D.!!$F2 3705
4 TraesCS2A01G573400 chr2D 644016788 644017421 633 False 462.000000 462 79.968000 1986 2613 1 chr2D.!!$F1 627
5 TraesCS2A01G573400 chr2D 643901092 643902439 1347 False 373.500000 606 79.955000 1082 2719 2 chr2D.!!$F3 1637
6 TraesCS2A01G573400 chr2B 793167630 793171075 3445 True 553.666667 1415 86.736333 1 3706 6 chr2B.!!$R3 3705
7 TraesCS2A01G573400 chr2B 793140924 793142141 1217 True 355.500000 553 80.652000 1082 2644 2 chr2B.!!$R2 1562
8 TraesCS2A01G573400 chr2B 793034046 793035076 1030 True 252.333333 427 82.759000 1081 2612 3 chr2B.!!$R1 1531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.034896 CTCACGCCTAACCCACAAGT 59.965 55.0 0.00 0.0 0.00 3.16 F
428 787 0.397254 TTCCTCCCGGAGATGAGACC 60.397 60.0 16.69 0.0 41.25 3.85 F
1208 4034 0.176680 GACCTGGAGCACATCGTCAT 59.823 55.0 0.00 0.0 31.77 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1104 3924 0.038744 CCAAGGCCAGGATGACAAGT 59.961 55.0 5.01 0.00 39.69 3.16 R
1564 4390 0.166379 CGGTTTAAAAGGCGCGCTTA 59.834 50.0 32.29 18.89 0.00 3.09 R
3132 6140 0.169451 TCAGCTGCAACGCATTCATG 59.831 50.0 9.47 0.00 38.13 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 0.034896 CTCACGCCTAACCCACAAGT 59.965 55.000 0.00 0.00 0.00 3.16
171 174 6.435591 CAGTATTCTCATGCCTATACTCTCCA 59.564 42.308 9.22 0.00 32.89 3.86
172 175 7.013220 AGTATTCTCATGCCTATACTCTCCAA 58.987 38.462 7.30 0.00 30.11 3.53
203 206 5.005107 GTCGATGACGGTAATTTAACTGGAC 59.995 44.000 0.00 0.00 40.21 4.02
204 207 5.105635 TCGATGACGGTAATTTAACTGGACT 60.106 40.000 0.00 0.00 40.21 3.85
205 208 5.005394 CGATGACGGTAATTTAACTGGACTG 59.995 44.000 0.00 0.00 35.72 3.51
206 209 5.217978 TGACGGTAATTTAACTGGACTGT 57.782 39.130 0.00 0.00 32.36 3.55
207 210 4.992319 TGACGGTAATTTAACTGGACTGTG 59.008 41.667 0.00 0.00 29.85 3.66
212 330 5.349543 GGTAATTTAACTGGACTGTGGTACG 59.650 44.000 0.00 0.00 0.00 3.67
273 626 2.868583 TCAGATATGCAAAGAGAAGCGC 59.131 45.455 0.00 0.00 0.00 5.92
416 775 5.359756 GTGCCATTCAAAATTATTCCTCCC 58.640 41.667 0.00 0.00 0.00 4.30
428 787 0.397254 TTCCTCCCGGAGATGAGACC 60.397 60.000 16.69 0.00 41.25 3.85
439 798 1.836166 AGATGAGACCACACTCCATGG 59.164 52.381 4.97 4.97 43.43 3.66
449 808 1.051008 CACTCCATGGATCGATCCCA 58.949 55.000 35.72 25.26 46.59 4.37
450 809 1.627329 CACTCCATGGATCGATCCCAT 59.373 52.381 35.72 26.15 46.59 4.00
451 810 1.905215 ACTCCATGGATCGATCCCATC 59.095 52.381 35.72 15.89 46.59 3.51
452 811 2.186243 CTCCATGGATCGATCCCATCT 58.814 52.381 35.72 18.38 46.59 2.90
655 1024 5.463051 AATCTTCTGGTTTCTCCATCCAT 57.537 39.130 0.00 0.00 46.12 3.41
787 1202 1.371183 CTCCAGGAAAGCGACACCA 59.629 57.895 0.00 0.00 0.00 4.17
806 1221 3.439129 ACCATCGATGCATGCATTATCAG 59.561 43.478 32.60 22.62 36.70 2.90
809 1224 3.999046 TCGATGCATGCATTATCAGACT 58.001 40.909 32.60 9.63 36.70 3.24
829 1244 5.245526 AGACTCTTTTATCACAACGGTAGGT 59.754 40.000 0.00 0.00 0.00 3.08
831 1246 5.245526 ACTCTTTTATCACAACGGTAGGTCT 59.754 40.000 0.00 0.00 0.00 3.85
863 1278 4.588951 TCTTCTGACTTCTAGGTTCAAGCA 59.411 41.667 0.00 0.00 0.00 3.91
889 1304 1.002430 ACTTGCACATGTCGATCCACT 59.998 47.619 0.00 0.00 0.00 4.00
898 1313 5.179368 CACATGTCGATCCACTTTTGTAAGT 59.821 40.000 0.00 0.00 45.40 2.24
901 1316 7.606456 ACATGTCGATCCACTTTTGTAAGTAAT 59.394 33.333 0.00 0.00 42.67 1.89
902 1317 7.591006 TGTCGATCCACTTTTGTAAGTAATC 57.409 36.000 0.00 0.00 42.67 1.75
906 1329 7.759886 TCGATCCACTTTTGTAAGTAATCTCTG 59.240 37.037 0.00 0.00 42.67 3.35
922 1345 1.446792 CTGGCTGCGACTTGTCGAT 60.447 57.895 24.65 0.00 34.64 3.59
963 1386 0.962489 ATCGAGCTATGCGGCTAACT 59.038 50.000 0.00 0.00 43.20 2.24
965 1388 1.266175 TCGAGCTATGCGGCTAACTAC 59.734 52.381 0.00 0.00 43.20 2.73
976 1399 2.474816 GGCTAACTACTTGCATCGGAG 58.525 52.381 0.00 0.00 0.00 4.63
984 1407 2.086869 ACTTGCATCGGAGACATTTGG 58.913 47.619 0.00 0.00 42.51 3.28
1015 1439 4.933400 CCGACCGATTATAAATACCTTGGG 59.067 45.833 0.00 0.00 0.00 4.12
1045 1473 2.022129 GAGGAAGCCACACGACACG 61.022 63.158 0.00 0.00 0.00 4.49
1091 3911 1.347707 AGTGAGAAAGATGGCGTCCAA 59.652 47.619 2.37 0.00 36.95 3.53
1111 3931 2.974148 CAGCAGCGGCACTTGTCA 60.974 61.111 12.44 0.00 44.61 3.58
1208 4034 0.176680 GACCTGGAGCACATCGTCAT 59.823 55.000 0.00 0.00 31.77 3.06
1329 4155 7.254185 CGGCACAAGTATACAATTTACGTATGT 60.254 37.037 5.50 5.68 32.01 2.29
1330 4156 9.033481 GGCACAAGTATACAATTTACGTATGTA 57.967 33.333 9.34 9.34 34.35 2.29
1340 4166 8.657074 ACAATTTACGTATGTATATGTGTGCT 57.343 30.769 0.00 0.00 34.54 4.40
1367 4193 6.805271 ACGTGACTAAGTGAACATATGTACAC 59.195 38.462 9.21 4.87 0.00 2.90
1368 4194 7.027760 CGTGACTAAGTGAACATATGTACACT 58.972 38.462 9.21 6.66 43.92 3.55
1370 4196 9.204570 GTGACTAAGTGAACATATGTACACTTT 57.795 33.333 9.21 3.66 46.69 2.66
1373 4199 8.922676 ACTAAGTGAACATATGTACACTTTTCG 58.077 33.333 9.21 8.16 46.69 3.46
1374 4200 7.724305 AAGTGAACATATGTACACTTTTCGT 57.276 32.000 9.21 0.00 46.69 3.85
1375 4201 7.347508 AGTGAACATATGTACACTTTTCGTC 57.652 36.000 9.21 0.00 40.03 4.20
1376 4202 6.926826 AGTGAACATATGTACACTTTTCGTCA 59.073 34.615 9.21 2.16 40.03 4.35
1377 4203 7.007697 GTGAACATATGTACACTTTTCGTCAC 58.992 38.462 9.21 10.92 0.00 3.67
1378 4204 6.702282 TGAACATATGTACACTTTTCGTCACA 59.298 34.615 9.21 0.00 0.00 3.58
1379 4205 6.706055 ACATATGTACACTTTTCGTCACAG 57.294 37.500 6.56 0.00 0.00 3.66
1380 4206 6.220930 ACATATGTACACTTTTCGTCACAGT 58.779 36.000 6.56 0.00 0.00 3.55
1381 4207 6.704493 ACATATGTACACTTTTCGTCACAGTT 59.296 34.615 6.56 0.00 0.00 3.16
1382 4208 7.225931 ACATATGTACACTTTTCGTCACAGTTT 59.774 33.333 6.56 0.00 0.00 2.66
1383 4209 8.705134 CATATGTACACTTTTCGTCACAGTTTA 58.295 33.333 0.00 0.00 0.00 2.01
1385 4211 6.331845 TGTACACTTTTCGTCACAGTTTAGA 58.668 36.000 0.00 0.00 0.00 2.10
1387 4213 6.345920 ACACTTTTCGTCACAGTTTAGAAG 57.654 37.500 0.00 0.00 0.00 2.85
1389 4215 4.272748 ACTTTTCGTCACAGTTTAGAAGGC 59.727 41.667 0.00 0.00 0.00 4.35
1391 4217 2.750948 TCGTCACAGTTTAGAAGGCAC 58.249 47.619 0.00 0.00 0.00 5.01
1393 4219 2.476619 CGTCACAGTTTAGAAGGCACAG 59.523 50.000 0.00 0.00 0.00 3.66
1394 4220 3.467803 GTCACAGTTTAGAAGGCACAGT 58.532 45.455 0.00 0.00 0.00 3.55
1396 4222 3.876914 TCACAGTTTAGAAGGCACAGTTG 59.123 43.478 0.00 0.00 0.00 3.16
1397 4223 3.876914 CACAGTTTAGAAGGCACAGTTGA 59.123 43.478 0.00 0.00 0.00 3.18
1398 4224 4.335315 CACAGTTTAGAAGGCACAGTTGAA 59.665 41.667 0.00 0.00 0.00 2.69
1399 4225 5.009010 CACAGTTTAGAAGGCACAGTTGAAT 59.991 40.000 0.00 0.00 0.00 2.57
1400 4226 5.594317 ACAGTTTAGAAGGCACAGTTGAATT 59.406 36.000 0.00 0.00 0.00 2.17
1401 4227 6.096846 ACAGTTTAGAAGGCACAGTTGAATTT 59.903 34.615 0.00 0.00 0.00 1.82
1402 4228 6.418819 CAGTTTAGAAGGCACAGTTGAATTTG 59.581 38.462 0.00 0.00 0.00 2.32
1403 4229 6.096846 AGTTTAGAAGGCACAGTTGAATTTGT 59.903 34.615 0.00 0.00 0.00 2.83
1404 4230 4.311816 AGAAGGCACAGTTGAATTTGTG 57.688 40.909 4.01 4.01 45.70 3.33
1405 4231 3.701040 AGAAGGCACAGTTGAATTTGTGT 59.299 39.130 9.19 0.00 44.95 3.72
1406 4232 3.441496 AGGCACAGTTGAATTTGTGTG 57.559 42.857 9.19 7.62 44.95 3.82
1409 4235 2.796304 CACAGTTGAATTTGTGTGCGT 58.204 42.857 0.66 0.00 39.77 5.24
1410 4236 3.178267 CACAGTTGAATTTGTGTGCGTT 58.822 40.909 0.66 0.00 39.77 4.84
1411 4237 3.611986 CACAGTTGAATTTGTGTGCGTTT 59.388 39.130 0.66 0.00 39.77 3.60
1412 4238 4.091220 CACAGTTGAATTTGTGTGCGTTTT 59.909 37.500 0.66 0.00 39.77 2.43
1413 4239 4.326009 ACAGTTGAATTTGTGTGCGTTTTC 59.674 37.500 0.00 0.00 0.00 2.29
1414 4240 4.325741 CAGTTGAATTTGTGTGCGTTTTCA 59.674 37.500 0.00 0.00 0.00 2.69
1415 4241 5.005586 CAGTTGAATTTGTGTGCGTTTTCAT 59.994 36.000 0.00 0.00 0.00 2.57
1416 4242 6.198029 CAGTTGAATTTGTGTGCGTTTTCATA 59.802 34.615 0.00 0.00 0.00 2.15
1417 4243 6.754209 AGTTGAATTTGTGTGCGTTTTCATAA 59.246 30.769 0.00 0.00 0.00 1.90
1418 4244 7.437862 AGTTGAATTTGTGTGCGTTTTCATAAT 59.562 29.630 0.00 0.00 0.00 1.28
1419 4245 7.706281 TGAATTTGTGTGCGTTTTCATAATT 57.294 28.000 0.00 0.00 0.00 1.40
1420 4246 7.562412 TGAATTTGTGTGCGTTTTCATAATTG 58.438 30.769 0.00 0.00 0.00 2.32
1421 4247 7.436376 TGAATTTGTGTGCGTTTTCATAATTGA 59.564 29.630 0.00 0.00 0.00 2.57
1422 4248 6.503616 TTTGTGTGCGTTTTCATAATTGAC 57.496 33.333 0.00 0.00 0.00 3.18
1423 4249 5.175090 TGTGTGCGTTTTCATAATTGACA 57.825 34.783 0.00 0.00 0.00 3.58
1424 4250 5.582550 TGTGTGCGTTTTCATAATTGACAA 58.417 33.333 0.00 0.00 0.00 3.18
1425 4251 5.685068 TGTGTGCGTTTTCATAATTGACAAG 59.315 36.000 0.00 0.00 0.00 3.16
1426 4252 5.116983 GTGTGCGTTTTCATAATTGACAAGG 59.883 40.000 0.00 0.00 32.97 3.61
1427 4253 5.219633 GTGCGTTTTCATAATTGACAAGGT 58.780 37.500 0.00 0.00 32.60 3.50
1428 4254 5.689961 GTGCGTTTTCATAATTGACAAGGTT 59.310 36.000 0.00 0.00 32.60 3.50
1429 4255 6.200097 GTGCGTTTTCATAATTGACAAGGTTT 59.800 34.615 0.00 0.00 32.60 3.27
1430 4256 7.380065 GTGCGTTTTCATAATTGACAAGGTTTA 59.620 33.333 0.00 0.00 32.60 2.01
1431 4257 7.593273 TGCGTTTTCATAATTGACAAGGTTTAG 59.407 33.333 0.00 0.00 32.60 1.85
1432 4258 7.061789 GCGTTTTCATAATTGACAAGGTTTAGG 59.938 37.037 0.00 0.00 32.60 2.69
1433 4259 8.293867 CGTTTTCATAATTGACAAGGTTTAGGA 58.706 33.333 0.00 0.00 0.00 2.94
1434 4260 9.406828 GTTTTCATAATTGACAAGGTTTAGGAC 57.593 33.333 0.00 0.00 0.00 3.85
1435 4261 6.978343 TCATAATTGACAAGGTTTAGGACG 57.022 37.500 0.00 0.00 0.00 4.79
1436 4262 5.353123 TCATAATTGACAAGGTTTAGGACGC 59.647 40.000 0.00 0.00 0.00 5.19
1437 4263 2.623878 TTGACAAGGTTTAGGACGCA 57.376 45.000 0.00 0.00 0.00 5.24
1438 4264 2.851263 TGACAAGGTTTAGGACGCAT 57.149 45.000 0.00 0.00 0.00 4.73
1439 4265 3.134574 TGACAAGGTTTAGGACGCATT 57.865 42.857 0.00 0.00 0.00 3.56
1440 4266 2.811431 TGACAAGGTTTAGGACGCATTG 59.189 45.455 0.00 0.00 0.00 2.82
1441 4267 2.812011 GACAAGGTTTAGGACGCATTGT 59.188 45.455 0.00 0.00 34.68 2.71
1442 4268 3.998341 GACAAGGTTTAGGACGCATTGTA 59.002 43.478 0.00 0.00 33.19 2.41
1443 4269 4.585879 ACAAGGTTTAGGACGCATTGTAT 58.414 39.130 0.00 0.00 32.05 2.29
1444 4270 5.007682 ACAAGGTTTAGGACGCATTGTATT 58.992 37.500 0.00 0.00 32.05 1.89
1445 4271 5.475564 ACAAGGTTTAGGACGCATTGTATTT 59.524 36.000 0.00 0.00 32.05 1.40
1446 4272 6.655848 ACAAGGTTTAGGACGCATTGTATTTA 59.344 34.615 0.00 0.00 32.05 1.40
1447 4273 7.338449 ACAAGGTTTAGGACGCATTGTATTTAT 59.662 33.333 0.00 0.00 32.05 1.40
1448 4274 7.875327 AGGTTTAGGACGCATTGTATTTATT 57.125 32.000 0.00 0.00 0.00 1.40
1449 4275 8.288689 AGGTTTAGGACGCATTGTATTTATTT 57.711 30.769 0.00 0.00 0.00 1.40
1450 4276 8.745590 AGGTTTAGGACGCATTGTATTTATTTT 58.254 29.630 0.00 0.00 0.00 1.82
1451 4277 9.361315 GGTTTAGGACGCATTGTATTTATTTTT 57.639 29.630 0.00 0.00 0.00 1.94
1457 4283 9.166126 GGACGCATTGTATTTATTTTTAGTAGC 57.834 33.333 0.00 0.00 0.00 3.58
1458 4284 9.931210 GACGCATTGTATTTATTTTTAGTAGCT 57.069 29.630 0.00 0.00 0.00 3.32
1472 4298 8.792830 TTTTTAGTAGCTAACTAGTACTCCGA 57.207 34.615 0.00 0.00 41.70 4.55
1473 4299 8.970859 TTTTAGTAGCTAACTAGTACTCCGAT 57.029 34.615 0.00 0.00 41.70 4.18
1503 4329 6.670077 TTTTTATATGCATGCGTAGTGTGA 57.330 33.333 23.20 8.08 0.00 3.58
1507 4333 0.447406 TGCATGCGTAGTGTGAATGC 59.553 50.000 14.09 0.00 43.08 3.56
1509 4335 1.933181 GCATGCGTAGTGTGAATGCTA 59.067 47.619 0.00 0.00 40.34 3.49
1510 4336 2.545526 GCATGCGTAGTGTGAATGCTAT 59.454 45.455 0.00 0.00 40.34 2.97
1513 4339 5.572211 CATGCGTAGTGTGAATGCTATTTT 58.428 37.500 0.00 0.00 0.00 1.82
1514 4340 5.621197 TGCGTAGTGTGAATGCTATTTTT 57.379 34.783 0.00 0.00 0.00 1.94
1532 4358 3.517296 TTTTAGCCCATCTCACAACCA 57.483 42.857 0.00 0.00 0.00 3.67
1533 4359 3.517296 TTTAGCCCATCTCACAACCAA 57.483 42.857 0.00 0.00 0.00 3.67
1534 4360 3.737559 TTAGCCCATCTCACAACCAAT 57.262 42.857 0.00 0.00 0.00 3.16
1535 4361 4.853468 TTAGCCCATCTCACAACCAATA 57.147 40.909 0.00 0.00 0.00 1.90
1536 4362 3.287867 AGCCCATCTCACAACCAATAG 57.712 47.619 0.00 0.00 0.00 1.73
1537 4363 2.846206 AGCCCATCTCACAACCAATAGA 59.154 45.455 0.00 0.00 0.00 1.98
1538 4364 3.461085 AGCCCATCTCACAACCAATAGAT 59.539 43.478 0.00 0.00 0.00 1.98
1539 4365 4.660303 AGCCCATCTCACAACCAATAGATA 59.340 41.667 0.00 0.00 0.00 1.98
1540 4366 5.132648 AGCCCATCTCACAACCAATAGATAA 59.867 40.000 0.00 0.00 0.00 1.75
1541 4367 5.239525 GCCCATCTCACAACCAATAGATAAC 59.760 44.000 0.00 0.00 0.00 1.89
1542 4368 5.765182 CCCATCTCACAACCAATAGATAACC 59.235 44.000 0.00 0.00 0.00 2.85
1543 4369 6.356556 CCATCTCACAACCAATAGATAACCA 58.643 40.000 0.00 0.00 0.00 3.67
1544 4370 6.260936 CCATCTCACAACCAATAGATAACCAC 59.739 42.308 0.00 0.00 0.00 4.16
1545 4371 5.741011 TCTCACAACCAATAGATAACCACC 58.259 41.667 0.00 0.00 0.00 4.61
1546 4372 5.487488 TCTCACAACCAATAGATAACCACCT 59.513 40.000 0.00 0.00 0.00 4.00
1547 4373 6.670464 TCTCACAACCAATAGATAACCACCTA 59.330 38.462 0.00 0.00 0.00 3.08
1548 4374 6.884832 TCACAACCAATAGATAACCACCTAG 58.115 40.000 0.00 0.00 0.00 3.02
1549 4375 6.670464 TCACAACCAATAGATAACCACCTAGA 59.330 38.462 0.00 0.00 0.00 2.43
1550 4376 6.761714 CACAACCAATAGATAACCACCTAGAC 59.238 42.308 0.00 0.00 0.00 2.59
1551 4377 6.126854 ACAACCAATAGATAACCACCTAGACC 60.127 42.308 0.00 0.00 0.00 3.85
1552 4378 5.789535 ACCAATAGATAACCACCTAGACCT 58.210 41.667 0.00 0.00 0.00 3.85
1553 4379 5.839606 ACCAATAGATAACCACCTAGACCTC 59.160 44.000 0.00 0.00 0.00 3.85
1554 4380 5.839063 CCAATAGATAACCACCTAGACCTCA 59.161 44.000 0.00 0.00 0.00 3.86
1555 4381 6.015010 CCAATAGATAACCACCTAGACCTCAG 60.015 46.154 0.00 0.00 0.00 3.35
1556 4382 4.883021 AGATAACCACCTAGACCTCAGA 57.117 45.455 0.00 0.00 0.00 3.27
1557 4383 4.798882 AGATAACCACCTAGACCTCAGAG 58.201 47.826 0.00 0.00 0.00 3.35
1558 4384 4.479056 AGATAACCACCTAGACCTCAGAGA 59.521 45.833 0.00 0.00 0.00 3.10
1559 4385 3.544698 AACCACCTAGACCTCAGAGAA 57.455 47.619 0.00 0.00 0.00 2.87
1560 4386 3.767309 ACCACCTAGACCTCAGAGAAT 57.233 47.619 0.00 0.00 0.00 2.40
1561 4387 4.067944 ACCACCTAGACCTCAGAGAATT 57.932 45.455 0.00 0.00 0.00 2.17
1562 4388 4.430441 ACCACCTAGACCTCAGAGAATTT 58.570 43.478 0.00 0.00 0.00 1.82
1563 4389 4.846940 ACCACCTAGACCTCAGAGAATTTT 59.153 41.667 0.00 0.00 0.00 1.82
1564 4390 5.310857 ACCACCTAGACCTCAGAGAATTTTT 59.689 40.000 0.00 0.00 0.00 1.94
1565 4391 6.500751 ACCACCTAGACCTCAGAGAATTTTTA 59.499 38.462 0.00 0.00 0.00 1.52
1566 4392 7.017254 ACCACCTAGACCTCAGAGAATTTTTAA 59.983 37.037 0.00 0.00 0.00 1.52
1567 4393 7.550906 CCACCTAGACCTCAGAGAATTTTTAAG 59.449 40.741 0.00 0.00 0.00 1.85
1568 4394 7.065204 CACCTAGACCTCAGAGAATTTTTAAGC 59.935 40.741 0.00 0.00 0.00 3.09
1569 4395 6.256757 CCTAGACCTCAGAGAATTTTTAAGCG 59.743 42.308 0.00 0.00 0.00 4.68
1570 4396 4.393371 AGACCTCAGAGAATTTTTAAGCGC 59.607 41.667 0.00 0.00 0.00 5.92
1571 4397 3.125316 ACCTCAGAGAATTTTTAAGCGCG 59.875 43.478 0.00 0.00 0.00 6.86
1572 4398 3.094294 CTCAGAGAATTTTTAAGCGCGC 58.906 45.455 26.66 26.66 0.00 6.86
1573 4399 2.159572 TCAGAGAATTTTTAAGCGCGCC 60.160 45.455 30.33 10.31 0.00 6.53
1574 4400 2.084546 AGAGAATTTTTAAGCGCGCCT 58.915 42.857 30.33 19.41 0.00 5.52
1575 4401 2.488153 AGAGAATTTTTAAGCGCGCCTT 59.512 40.909 30.33 22.58 37.57 4.35
1576 4402 3.057526 AGAGAATTTTTAAGCGCGCCTTT 60.058 39.130 30.33 19.52 34.95 3.11
1577 4403 3.649073 AGAATTTTTAAGCGCGCCTTTT 58.351 36.364 30.33 18.70 34.95 2.27
1578 4404 4.800784 AGAATTTTTAAGCGCGCCTTTTA 58.199 34.783 30.33 17.52 34.95 1.52
1579 4405 5.224135 AGAATTTTTAAGCGCGCCTTTTAA 58.776 33.333 30.33 22.44 34.95 1.52
1580 4406 5.692654 AGAATTTTTAAGCGCGCCTTTTAAA 59.307 32.000 30.33 26.55 34.95 1.52
1581 4407 4.695655 TTTTTAAGCGCGCCTTTTAAAC 57.304 36.364 30.33 0.00 34.95 2.01
1582 4408 2.334971 TTAAGCGCGCCTTTTAAACC 57.665 45.000 30.33 0.00 34.95 3.27
1583 4409 0.166379 TAAGCGCGCCTTTTAAACCG 59.834 50.000 30.33 0.00 34.95 4.44
1584 4410 1.788067 AAGCGCGCCTTTTAAACCGT 61.788 50.000 30.33 0.13 0.00 4.83
1585 4411 2.078341 GCGCGCCTTTTAAACCGTG 61.078 57.895 23.24 9.84 0.00 4.94
1586 4412 1.570475 CGCGCCTTTTAAACCGTGA 59.430 52.632 0.00 0.00 33.47 4.35
1587 4413 0.723459 CGCGCCTTTTAAACCGTGAC 60.723 55.000 0.00 0.00 33.47 3.67
1588 4414 0.308376 GCGCCTTTTAAACCGTGACA 59.692 50.000 0.00 0.00 0.00 3.58
1589 4415 1.662026 GCGCCTTTTAAACCGTGACAG 60.662 52.381 0.00 0.00 0.00 3.51
1590 4416 1.868498 CGCCTTTTAAACCGTGACAGA 59.132 47.619 0.00 0.00 0.00 3.41
1591 4417 2.096417 CGCCTTTTAAACCGTGACAGAG 60.096 50.000 0.00 0.00 0.00 3.35
1592 4418 2.225727 GCCTTTTAAACCGTGACAGAGG 59.774 50.000 0.00 0.00 0.00 3.69
1593 4419 2.812011 CCTTTTAAACCGTGACAGAGGG 59.188 50.000 2.37 0.00 35.53 4.30
1594 4420 3.495453 CCTTTTAAACCGTGACAGAGGGA 60.495 47.826 2.37 0.00 33.43 4.20
1595 4421 3.396260 TTTAAACCGTGACAGAGGGAG 57.604 47.619 2.37 0.00 33.43 4.30
1596 4422 2.005370 TAAACCGTGACAGAGGGAGT 57.995 50.000 2.37 0.00 33.43 3.85
1597 4423 2.005370 AAACCGTGACAGAGGGAGTA 57.995 50.000 2.37 0.00 33.43 2.59
1598 4424 1.546961 AACCGTGACAGAGGGAGTAG 58.453 55.000 2.37 0.00 33.43 2.57
1599 4425 0.404812 ACCGTGACAGAGGGAGTAGT 59.595 55.000 2.37 0.00 33.43 2.73
1600 4426 1.632409 ACCGTGACAGAGGGAGTAGTA 59.368 52.381 2.37 0.00 33.43 1.82
1606 4432 6.228995 CGTGACAGAGGGAGTAGTATGTATA 58.771 44.000 0.00 0.00 0.00 1.47
1674 4505 9.480053 ACGCTTCTTACTTATTTACTGTTGTTA 57.520 29.630 0.00 0.00 0.00 2.41
1827 4658 1.227380 GATTGTCTCCTGCGCCGAT 60.227 57.895 4.18 0.00 0.00 4.18
1888 4719 2.648059 GCTACGTACCCTAGACCTTGA 58.352 52.381 0.00 0.00 0.00 3.02
1930 4770 3.033184 GGGCCATCAATCCAAATCTGAA 58.967 45.455 4.39 0.00 0.00 3.02
1948 4790 2.684374 TGAATGTTCAGATTGGATGCCG 59.316 45.455 0.00 0.00 32.50 5.69
2103 5017 1.301401 CGTGCCGGAACTCCTCAAA 60.301 57.895 11.82 0.00 0.00 2.69
2311 5225 0.246635 CGTCAACCAGACCCTCGATT 59.753 55.000 0.00 0.00 44.66 3.34
2358 5272 9.209175 GACAACAAGTACTACTTTGATCTCATT 57.791 33.333 14.71 0.00 36.03 2.57
2370 5284 0.333993 ATCTCATTGCCAAGCAGGGT 59.666 50.000 0.00 0.00 40.61 4.34
2541 5455 1.741770 GATCCGGTTCAACTGCGCT 60.742 57.895 9.73 0.00 0.00 5.92
2655 5576 2.920869 CGTGTGAGTCGTGTGTGC 59.079 61.111 0.00 0.00 0.00 4.57
2660 5581 0.732880 GTGAGTCGTGTGTGCGCTAT 60.733 55.000 9.73 0.00 0.00 2.97
2688 5616 1.885887 TCATGGTGCTAGTGGTTTTGC 59.114 47.619 0.00 0.00 0.00 3.68
2694 5622 3.425758 GGTGCTAGTGGTTTTGCGTAATC 60.426 47.826 0.00 0.00 0.00 1.75
2711 5643 7.395645 TGCGTAATCGTGATGTTGTAATAAAG 58.604 34.615 0.00 0.00 39.49 1.85
2719 5655 7.654116 TCGTGATGTTGTAATAAAGTGAGTGAA 59.346 33.333 0.00 0.00 0.00 3.18
2745 5681 5.252397 AGACATCATGCCCCAAGTATATGAT 59.748 40.000 0.00 0.00 38.60 2.45
2753 5689 4.623171 GCCCCAAGTATATGATTCCTACCG 60.623 50.000 0.00 0.00 0.00 4.02
2821 5757 5.132648 TGGACTATGGTTCCAGAAATGCTAT 59.867 40.000 0.00 0.00 0.00 2.97
2825 5761 4.842531 TGGTTCCAGAAATGCTATCTCA 57.157 40.909 0.00 0.00 0.00 3.27
2831 5767 4.713814 TCCAGAAATGCTATCTCAGTCACT 59.286 41.667 0.00 0.00 0.00 3.41
2841 5777 1.547820 TCTCAGTCACTGTCATCCTGC 59.452 52.381 4.28 0.00 32.61 4.85
2843 5779 2.757314 CTCAGTCACTGTCATCCTGCTA 59.243 50.000 4.28 0.00 32.61 3.49
2845 5781 2.495270 CAGTCACTGTCATCCTGCTACT 59.505 50.000 0.00 0.00 0.00 2.57
2846 5782 2.495270 AGTCACTGTCATCCTGCTACTG 59.505 50.000 0.00 0.00 0.00 2.74
2877 5822 1.559368 ATGCAGCATAAGGCCAAACA 58.441 45.000 5.94 0.00 46.50 2.83
2910 5855 8.194769 ACCAAAACTTACCATTTCAAGTGTAAG 58.805 33.333 0.00 0.00 43.55 2.34
2912 5857 5.959618 ACTTACCATTTCAAGTGTAAGCC 57.040 39.130 7.88 0.00 42.35 4.35
2953 5944 9.337396 TGATATAGAAAATTGATGTACCACACC 57.663 33.333 0.00 0.00 0.00 4.16
2975 5966 2.927856 TGAAAGGGCTGCTCCGGA 60.928 61.111 2.93 2.93 34.94 5.14
3015 6006 4.987285 GCAGATCGATCTTAGCAGAAATCA 59.013 41.667 25.25 0.00 34.22 2.57
3024 6015 2.086054 AGCAGAAATCAGACGGACAC 57.914 50.000 0.00 0.00 0.00 3.67
3028 6019 2.733552 CAGAAATCAGACGGACACACTG 59.266 50.000 0.00 0.00 0.00 3.66
3033 6024 1.073216 CAGACGGACACACTGATCGC 61.073 60.000 0.00 0.00 34.07 4.58
3034 6025 1.213013 GACGGACACACTGATCGCT 59.787 57.895 0.00 0.00 0.00 4.93
3035 6026 1.073216 GACGGACACACTGATCGCTG 61.073 60.000 0.00 0.00 0.00 5.18
3036 6027 1.212751 CGGACACACTGATCGCTGA 59.787 57.895 0.00 0.00 0.00 4.26
3037 6028 0.179127 CGGACACACTGATCGCTGAT 60.179 55.000 0.00 0.00 0.00 2.90
3038 6029 1.284657 GGACACACTGATCGCTGATG 58.715 55.000 0.00 0.00 0.00 3.07
3039 6030 0.649475 GACACACTGATCGCTGATGC 59.351 55.000 0.00 0.00 0.00 3.91
3163 6181 5.438117 CGTTGCAGCTGAAATATCATACAG 58.562 41.667 20.43 0.00 34.37 2.74
3173 6191 8.748412 GCTGAAATATCATACAGATCCTCTAGT 58.252 37.037 0.00 0.00 38.19 2.57
3184 6202 7.906199 ACAGATCCTCTAGTTAGCTACAAAT 57.094 36.000 0.00 0.00 0.00 2.32
3187 6205 8.301002 CAGATCCTCTAGTTAGCTACAAATACC 58.699 40.741 0.00 0.00 0.00 2.73
3195 6213 6.178324 AGTTAGCTACAAATACCTCAAACCC 58.822 40.000 0.00 0.00 0.00 4.11
3196 6214 4.650972 AGCTACAAATACCTCAAACCCA 57.349 40.909 0.00 0.00 0.00 4.51
3197 6215 4.993028 AGCTACAAATACCTCAAACCCAA 58.007 39.130 0.00 0.00 0.00 4.12
3198 6216 4.765339 AGCTACAAATACCTCAAACCCAAC 59.235 41.667 0.00 0.00 0.00 3.77
3199 6217 4.379082 GCTACAAATACCTCAAACCCAACG 60.379 45.833 0.00 0.00 0.00 4.10
3200 6218 3.822940 ACAAATACCTCAAACCCAACGA 58.177 40.909 0.00 0.00 0.00 3.85
3201 6219 4.403734 ACAAATACCTCAAACCCAACGAT 58.596 39.130 0.00 0.00 0.00 3.73
3203 6221 3.992943 ATACCTCAAACCCAACGATGA 57.007 42.857 0.00 0.00 0.00 2.92
3204 6222 2.649531 ACCTCAAACCCAACGATGAA 57.350 45.000 0.00 0.00 0.00 2.57
3208 6226 3.255642 CCTCAAACCCAACGATGAATTGT 59.744 43.478 0.00 0.00 0.00 2.71
3210 6228 3.058570 TCAAACCCAACGATGAATTGTCG 60.059 43.478 7.96 7.96 44.26 4.35
3246 6270 3.181482 ACGCATCCATGACTAAGACTGAG 60.181 47.826 0.00 0.00 0.00 3.35
3254 6278 3.432051 CTAAGACTGAGGCGGCCCG 62.432 68.421 17.02 0.00 35.76 6.13
3265 6289 4.870190 CGGCCCGCCTAATTAGTT 57.130 55.556 11.50 0.00 0.00 2.24
3266 6290 3.993382 CGGCCCGCCTAATTAGTTA 57.007 52.632 11.50 0.00 0.00 2.24
3267 6291 1.792006 CGGCCCGCCTAATTAGTTAG 58.208 55.000 11.50 0.00 37.61 2.34
3268 6292 1.520494 GGCCCGCCTAATTAGTTAGC 58.480 55.000 11.50 6.89 36.74 3.09
3296 6328 7.902917 GGTTTTCTTTTCTCATTTCCGTTTTTG 59.097 33.333 0.00 0.00 0.00 2.44
3299 6331 8.623310 TTCTTTTCTCATTTCCGTTTTTGTAC 57.377 30.769 0.00 0.00 0.00 2.90
3305 6337 3.439895 TTTCCGTTTTTGTACCCAAGC 57.560 42.857 0.00 0.00 0.00 4.01
3311 6343 1.175983 TTTTGTACCCAAGCTGCCCG 61.176 55.000 0.00 0.00 0.00 6.13
3320 6352 1.456705 AAGCTGCCCGGAAAAACCA 60.457 52.632 0.73 0.00 38.90 3.67
3329 6361 2.220313 CCGGAAAAACCAGTTACCGAA 58.780 47.619 18.41 0.00 42.40 4.30
3336 6368 6.642131 GGAAAAACCAGTTACCGAAAAATACC 59.358 38.462 0.00 0.00 38.79 2.73
3352 6384 9.296400 CGAAAAATACCGGAAATATCATGTTTT 57.704 29.630 9.46 3.98 0.00 2.43
3356 6388 8.754991 AATACCGGAAATATCATGTTTTACCA 57.245 30.769 9.46 0.00 0.00 3.25
3359 6391 7.060421 ACCGGAAATATCATGTTTTACCATCT 58.940 34.615 9.46 0.00 0.00 2.90
3360 6392 7.013274 ACCGGAAATATCATGTTTTACCATCTG 59.987 37.037 9.46 0.00 0.00 2.90
3373 6405 8.812329 TGTTTTACCATCTGAAATTTTTGAACG 58.188 29.630 0.00 0.00 0.00 3.95
3378 6410 8.075593 ACCATCTGAAATTTTTGAACGAAATG 57.924 30.769 0.00 0.00 0.00 2.32
3391 6432 8.568732 TTTGAACGAAATGTTATTTCAAGGAC 57.431 30.769 12.99 2.81 42.09 3.85
3397 6438 6.801862 CGAAATGTTATTTCAAGGACTGGAAC 59.198 38.462 12.99 0.00 0.00 3.62
3400 6441 6.385649 TGTTATTTCAAGGACTGGAACAAC 57.614 37.500 6.32 6.32 38.70 3.32
3410 6451 8.215050 TCAAGGACTGGAACAACTTTATTTAGA 58.785 33.333 0.00 0.00 38.70 2.10
3424 6468 2.525105 TTTAGACCTTCAATGGGCCC 57.475 50.000 17.59 17.59 35.12 5.80
3428 6472 2.037208 CCTTCAATGGGCCCCGTT 59.963 61.111 22.27 11.97 32.22 4.44
3439 6483 1.266867 GGCCCCGTTAGTAGGAACCA 61.267 60.000 0.00 0.00 0.00 3.67
3456 6500 4.457603 GGAACCAGTTTTTGCCAAACTTTT 59.542 37.500 8.12 5.53 38.32 2.27
3465 6509 4.442375 TTGCCAAACTTTTGAGTTCGAA 57.558 36.364 3.17 0.00 40.55 3.71
3491 6535 3.132925 TGAAGCTGCTGCCAAATTTTTC 58.867 40.909 12.44 8.07 40.80 2.29
3493 6537 1.159285 GCTGCTGCCAAATTTTTCCC 58.841 50.000 3.85 0.00 0.00 3.97
3494 6538 1.542987 GCTGCTGCCAAATTTTTCCCA 60.543 47.619 3.85 0.00 0.00 4.37
3495 6539 2.145536 CTGCTGCCAAATTTTTCCCAC 58.854 47.619 0.00 0.00 0.00 4.61
3496 6540 1.767681 TGCTGCCAAATTTTTCCCACT 59.232 42.857 0.00 0.00 0.00 4.00
3497 6541 2.145536 GCTGCCAAATTTTTCCCACTG 58.854 47.619 0.00 0.00 0.00 3.66
3498 6542 2.224257 GCTGCCAAATTTTTCCCACTGA 60.224 45.455 0.00 0.00 0.00 3.41
3499 6543 3.743899 GCTGCCAAATTTTTCCCACTGAA 60.744 43.478 0.00 0.00 0.00 3.02
3500 6544 3.802866 TGCCAAATTTTTCCCACTGAAC 58.197 40.909 0.00 0.00 31.05 3.18
3501 6545 3.138304 GCCAAATTTTTCCCACTGAACC 58.862 45.455 0.00 0.00 31.05 3.62
3503 6547 3.135530 CCAAATTTTTCCCACTGAACCCA 59.864 43.478 0.00 0.00 31.05 4.51
3505 6549 5.375773 CAAATTTTTCCCACTGAACCCATT 58.624 37.500 0.00 0.00 31.05 3.16
3506 6550 5.645056 AATTTTTCCCACTGAACCCATTT 57.355 34.783 0.00 0.00 31.05 2.32
3507 6551 5.645056 ATTTTTCCCACTGAACCCATTTT 57.355 34.783 0.00 0.00 31.05 1.82
3508 6552 5.443230 TTTTTCCCACTGAACCCATTTTT 57.557 34.783 0.00 0.00 31.05 1.94
3528 6572 4.330944 TTTTACGCTGTTCTTCCTCTCA 57.669 40.909 0.00 0.00 0.00 3.27
3534 6578 3.034635 GCTGTTCTTCCTCTCATAGGGA 58.965 50.000 0.00 0.00 46.55 4.20
3557 6606 4.357918 ACTTGGCAGTGAGAGTAAACAT 57.642 40.909 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 4.202274 TGACCGATTCTTTGTGGAGTTGTA 60.202 41.667 0.00 0.00 0.00 2.41
171 174 6.737254 AATTACCGTCATCGACATCTTTTT 57.263 33.333 0.00 0.00 39.71 1.94
172 175 6.737254 AAATTACCGTCATCGACATCTTTT 57.263 33.333 0.00 0.00 39.71 2.27
203 206 3.204526 AGCTAGCTACTACGTACCACAG 58.795 50.000 17.69 0.00 0.00 3.66
204 207 3.272574 AGCTAGCTACTACGTACCACA 57.727 47.619 17.69 0.00 0.00 4.17
205 208 4.626042 TCTAGCTAGCTACTACGTACCAC 58.374 47.826 20.67 0.00 0.00 4.16
206 209 4.944619 TCTAGCTAGCTACTACGTACCA 57.055 45.455 20.67 0.00 0.00 3.25
207 210 5.390779 GCATTCTAGCTAGCTACTACGTACC 60.391 48.000 20.67 1.46 0.00 3.34
212 330 5.241949 TGAAGGCATTCTAGCTAGCTACTAC 59.758 44.000 20.67 8.37 36.33 2.73
273 626 2.964464 AGACTAGATGGAGCCAGTCATG 59.036 50.000 0.00 0.00 39.90 3.07
416 775 0.457851 GGAGTGTGGTCTCATCTCCG 59.542 60.000 0.00 0.00 37.24 4.63
428 787 2.160822 GGATCGATCCATGGAGTGTG 57.839 55.000 34.65 9.57 46.38 3.82
439 798 5.451242 GCTGGTTAGATAGATGGGATCGATC 60.451 48.000 17.36 17.36 40.40 3.69
591 952 9.811995 GTTAATGTATATATTGTCGGGCATAGA 57.188 33.333 5.06 0.00 0.00 1.98
655 1024 0.911769 AGCTGACCGGATTGATTCCA 59.088 50.000 9.46 0.00 45.78 3.53
734 1149 1.611491 CATTTGCACCTAACCAACGGT 59.389 47.619 0.00 0.00 37.65 4.83
770 1185 0.036388 GATGGTGTCGCTTTCCTGGA 60.036 55.000 0.00 0.00 0.00 3.86
787 1202 4.576879 AGTCTGATAATGCATGCATCGAT 58.423 39.130 32.25 26.33 35.31 3.59
806 1221 5.476614 ACCTACCGTTGTGATAAAAGAGTC 58.523 41.667 0.00 0.00 0.00 3.36
809 1224 5.733620 AGACCTACCGTTGTGATAAAAGA 57.266 39.130 0.00 0.00 0.00 2.52
889 1304 4.391830 CGCAGCCAGAGATTACTTACAAAA 59.608 41.667 0.00 0.00 0.00 2.44
898 1313 1.550524 ACAAGTCGCAGCCAGAGATTA 59.449 47.619 0.00 0.00 0.00 1.75
901 1316 1.290324 GACAAGTCGCAGCCAGAGA 59.710 57.895 0.00 0.00 0.00 3.10
902 1317 2.091112 CGACAAGTCGCAGCCAGAG 61.091 63.158 9.85 0.00 46.50 3.35
922 1345 3.327464 TCTGATCCACAATTCCACACAGA 59.673 43.478 0.00 0.00 0.00 3.41
963 1386 3.270027 CCAAATGTCTCCGATGCAAGTA 58.730 45.455 0.00 0.00 0.00 2.24
965 1388 1.202222 GCCAAATGTCTCCGATGCAAG 60.202 52.381 0.00 0.00 0.00 4.01
976 1399 2.106683 CGGTCCTCGGCCAAATGTC 61.107 63.158 2.24 0.00 34.75 3.06
984 1407 1.803366 ATAATCGGTCGGTCCTCGGC 61.803 60.000 0.00 0.00 43.79 5.54
1045 1473 1.878734 GCAGATGGATGGAGCTAAAGC 59.121 52.381 0.00 0.00 42.49 3.51
1091 3911 3.667282 CAAGTGCCGCTGCTGCTT 61.667 61.111 16.81 3.38 38.71 3.91
1104 3924 0.038744 CCAAGGCCAGGATGACAAGT 59.961 55.000 5.01 0.00 39.69 3.16
1107 3927 2.356278 GCCAAGGCCAGGATGACA 59.644 61.111 17.70 0.00 39.69 3.58
1231 4057 2.633509 CGACCCCGACGTCTTTCCT 61.634 63.158 14.70 0.00 38.22 3.36
1257 4083 0.755686 GGAAGAGGATGCGGATGAGT 59.244 55.000 0.00 0.00 0.00 3.41
1297 4123 7.486802 AAATTGTATACTTGTGCCGTATACC 57.513 36.000 14.30 2.41 44.44 2.73
1322 4148 5.684184 CACGTAAGCACACATATACATACGT 59.316 40.000 0.00 0.00 46.05 3.57
1329 4155 6.970613 CACTTAGTCACGTAAGCACACATATA 59.029 38.462 0.00 0.00 45.62 0.86
1330 4156 5.805486 CACTTAGTCACGTAAGCACACATAT 59.195 40.000 0.00 0.00 45.62 1.78
1331 4157 5.048573 TCACTTAGTCACGTAAGCACACATA 60.049 40.000 0.00 0.00 45.62 2.29
1332 4158 3.987868 CACTTAGTCACGTAAGCACACAT 59.012 43.478 0.00 0.00 45.62 3.21
1333 4159 3.067040 TCACTTAGTCACGTAAGCACACA 59.933 43.478 0.00 0.00 45.62 3.72
1334 4160 3.635331 TCACTTAGTCACGTAAGCACAC 58.365 45.455 0.00 0.00 45.62 3.82
1340 4166 8.513774 TGTACATATGTTCACTTAGTCACGTAA 58.486 33.333 14.77 0.00 0.00 3.18
1367 4193 4.272504 TGCCTTCTAAACTGTGACGAAAAG 59.727 41.667 0.00 0.00 0.00 2.27
1368 4194 4.034742 GTGCCTTCTAAACTGTGACGAAAA 59.965 41.667 0.00 0.00 0.00 2.29
1370 4196 3.128349 GTGCCTTCTAAACTGTGACGAA 58.872 45.455 0.00 0.00 0.00 3.85
1372 4198 2.476619 CTGTGCCTTCTAAACTGTGACG 59.523 50.000 0.00 0.00 0.00 4.35
1373 4199 3.467803 ACTGTGCCTTCTAAACTGTGAC 58.532 45.455 0.00 0.00 0.00 3.67
1374 4200 3.838244 ACTGTGCCTTCTAAACTGTGA 57.162 42.857 0.00 0.00 0.00 3.58
1375 4201 3.876914 TCAACTGTGCCTTCTAAACTGTG 59.123 43.478 0.00 0.00 0.00 3.66
1376 4202 4.150897 TCAACTGTGCCTTCTAAACTGT 57.849 40.909 0.00 0.00 0.00 3.55
1377 4203 5.695851 ATTCAACTGTGCCTTCTAAACTG 57.304 39.130 0.00 0.00 0.00 3.16
1378 4204 6.096846 ACAAATTCAACTGTGCCTTCTAAACT 59.903 34.615 0.00 0.00 0.00 2.66
1379 4205 6.198966 CACAAATTCAACTGTGCCTTCTAAAC 59.801 38.462 0.00 0.00 36.80 2.01
1380 4206 6.127479 ACACAAATTCAACTGTGCCTTCTAAA 60.127 34.615 7.71 0.00 45.56 1.85
1381 4207 5.359576 ACACAAATTCAACTGTGCCTTCTAA 59.640 36.000 7.71 0.00 45.56 2.10
1382 4208 4.887071 ACACAAATTCAACTGTGCCTTCTA 59.113 37.500 7.71 0.00 45.56 2.10
1383 4209 3.701040 ACACAAATTCAACTGTGCCTTCT 59.299 39.130 7.71 0.00 45.56 2.85
1385 4211 3.784338 CACACAAATTCAACTGTGCCTT 58.216 40.909 7.71 0.00 45.56 4.35
1389 4215 2.796304 ACGCACACAAATTCAACTGTG 58.204 42.857 6.47 6.47 46.76 3.66
1391 4217 4.325741 TGAAAACGCACACAAATTCAACTG 59.674 37.500 0.00 0.00 0.00 3.16
1393 4219 4.831741 TGAAAACGCACACAAATTCAAC 57.168 36.364 0.00 0.00 0.00 3.18
1394 4220 7.706281 ATTATGAAAACGCACACAAATTCAA 57.294 28.000 0.00 0.00 31.37 2.69
1396 4222 7.735586 GTCAATTATGAAAACGCACACAAATTC 59.264 33.333 0.00 0.00 37.30 2.17
1397 4223 7.223582 TGTCAATTATGAAAACGCACACAAATT 59.776 29.630 0.00 0.00 37.30 1.82
1398 4224 6.699204 TGTCAATTATGAAAACGCACACAAAT 59.301 30.769 0.00 0.00 37.30 2.32
1399 4225 6.036470 TGTCAATTATGAAAACGCACACAAA 58.964 32.000 0.00 0.00 37.30 2.83
1400 4226 5.582550 TGTCAATTATGAAAACGCACACAA 58.417 33.333 0.00 0.00 37.30 3.33
1401 4227 5.175090 TGTCAATTATGAAAACGCACACA 57.825 34.783 0.00 0.00 37.30 3.72
1402 4228 5.116983 CCTTGTCAATTATGAAAACGCACAC 59.883 40.000 0.00 0.00 37.30 3.82
1403 4229 5.218885 CCTTGTCAATTATGAAAACGCACA 58.781 37.500 0.00 0.00 37.30 4.57
1404 4230 5.219633 ACCTTGTCAATTATGAAAACGCAC 58.780 37.500 0.00 0.00 37.30 5.34
1405 4231 5.446143 ACCTTGTCAATTATGAAAACGCA 57.554 34.783 0.00 0.00 37.30 5.24
1406 4232 6.763303 AAACCTTGTCAATTATGAAAACGC 57.237 33.333 0.00 0.00 37.30 4.84
1407 4233 8.293867 TCCTAAACCTTGTCAATTATGAAAACG 58.706 33.333 0.00 0.00 37.30 3.60
1408 4234 9.406828 GTCCTAAACCTTGTCAATTATGAAAAC 57.593 33.333 0.00 0.00 37.30 2.43
1409 4235 8.293867 CGTCCTAAACCTTGTCAATTATGAAAA 58.706 33.333 0.00 0.00 37.30 2.29
1410 4236 7.574217 GCGTCCTAAACCTTGTCAATTATGAAA 60.574 37.037 0.00 0.00 37.30 2.69
1411 4237 6.128117 GCGTCCTAAACCTTGTCAATTATGAA 60.128 38.462 0.00 0.00 37.30 2.57
1412 4238 5.353123 GCGTCCTAAACCTTGTCAATTATGA 59.647 40.000 0.00 0.00 0.00 2.15
1413 4239 5.123186 TGCGTCCTAAACCTTGTCAATTATG 59.877 40.000 0.00 0.00 0.00 1.90
1414 4240 5.250200 TGCGTCCTAAACCTTGTCAATTAT 58.750 37.500 0.00 0.00 0.00 1.28
1415 4241 4.643463 TGCGTCCTAAACCTTGTCAATTA 58.357 39.130 0.00 0.00 0.00 1.40
1416 4242 3.482436 TGCGTCCTAAACCTTGTCAATT 58.518 40.909 0.00 0.00 0.00 2.32
1417 4243 3.134574 TGCGTCCTAAACCTTGTCAAT 57.865 42.857 0.00 0.00 0.00 2.57
1418 4244 2.623878 TGCGTCCTAAACCTTGTCAA 57.376 45.000 0.00 0.00 0.00 3.18
1419 4245 2.811431 CAATGCGTCCTAAACCTTGTCA 59.189 45.455 0.00 0.00 0.00 3.58
1420 4246 2.812011 ACAATGCGTCCTAAACCTTGTC 59.188 45.455 0.00 0.00 0.00 3.18
1421 4247 2.858745 ACAATGCGTCCTAAACCTTGT 58.141 42.857 0.00 0.00 0.00 3.16
1422 4248 5.560966 AATACAATGCGTCCTAAACCTTG 57.439 39.130 0.00 0.00 0.00 3.61
1423 4249 7.875327 ATAAATACAATGCGTCCTAAACCTT 57.125 32.000 0.00 0.00 0.00 3.50
1424 4250 7.875327 AATAAATACAATGCGTCCTAAACCT 57.125 32.000 0.00 0.00 0.00 3.50
1425 4251 8.920509 AAAATAAATACAATGCGTCCTAAACC 57.079 30.769 0.00 0.00 0.00 3.27
1431 4257 9.166126 GCTACTAAAAATAAATACAATGCGTCC 57.834 33.333 0.00 0.00 0.00 4.79
1432 4258 9.931210 AGCTACTAAAAATAAATACAATGCGTC 57.069 29.630 0.00 0.00 0.00 5.19
1446 4272 9.401058 TCGGAGTACTAGTTAGCTACTAAAAAT 57.599 33.333 0.00 0.00 38.84 1.82
1447 4273 8.792830 TCGGAGTACTAGTTAGCTACTAAAAA 57.207 34.615 0.00 0.00 38.84 1.94
1448 4274 8.970859 ATCGGAGTACTAGTTAGCTACTAAAA 57.029 34.615 0.00 0.00 38.84 1.52
1452 4278 9.034800 AGTATATCGGAGTACTAGTTAGCTACT 57.965 37.037 0.00 0.00 41.04 2.57
1469 4295 9.797473 CGCATGCATATAAAAATAGTATATCGG 57.203 33.333 19.57 0.00 0.00 4.18
1475 4301 9.483916 ACACTACGCATGCATATAAAAATAGTA 57.516 29.630 19.57 6.04 0.00 1.82
1477 4303 8.495148 TCACACTACGCATGCATATAAAAATAG 58.505 33.333 19.57 6.89 0.00 1.73
1480 4306 6.670077 TCACACTACGCATGCATATAAAAA 57.330 33.333 19.57 0.00 0.00 1.94
1483 4309 5.334028 GCATTCACACTACGCATGCATATAA 60.334 40.000 19.57 0.86 40.06 0.98
1485 4311 3.058708 GCATTCACACTACGCATGCATAT 60.059 43.478 19.57 4.84 40.06 1.78
1513 4339 3.517296 TTGGTTGTGAGATGGGCTAAA 57.483 42.857 0.00 0.00 0.00 1.85
1514 4340 3.737559 ATTGGTTGTGAGATGGGCTAA 57.262 42.857 0.00 0.00 0.00 3.09
1515 4341 4.037222 TCTATTGGTTGTGAGATGGGCTA 58.963 43.478 0.00 0.00 0.00 3.93
1516 4342 2.846206 TCTATTGGTTGTGAGATGGGCT 59.154 45.455 0.00 0.00 0.00 5.19
1517 4343 3.281727 TCTATTGGTTGTGAGATGGGC 57.718 47.619 0.00 0.00 0.00 5.36
1518 4344 5.765182 GGTTATCTATTGGTTGTGAGATGGG 59.235 44.000 0.00 0.00 31.25 4.00
1519 4345 6.260936 GTGGTTATCTATTGGTTGTGAGATGG 59.739 42.308 0.00 0.00 31.25 3.51
1520 4346 6.260936 GGTGGTTATCTATTGGTTGTGAGATG 59.739 42.308 0.00 0.00 31.25 2.90
1521 4347 6.158695 AGGTGGTTATCTATTGGTTGTGAGAT 59.841 38.462 0.00 0.00 33.32 2.75
1522 4348 5.487488 AGGTGGTTATCTATTGGTTGTGAGA 59.513 40.000 0.00 0.00 0.00 3.27
1523 4349 5.745227 AGGTGGTTATCTATTGGTTGTGAG 58.255 41.667 0.00 0.00 0.00 3.51
1524 4350 5.772393 AGGTGGTTATCTATTGGTTGTGA 57.228 39.130 0.00 0.00 0.00 3.58
1525 4351 6.761714 GTCTAGGTGGTTATCTATTGGTTGTG 59.238 42.308 0.00 0.00 0.00 3.33
1526 4352 6.126854 GGTCTAGGTGGTTATCTATTGGTTGT 60.127 42.308 0.00 0.00 0.00 3.32
1527 4353 6.099845 AGGTCTAGGTGGTTATCTATTGGTTG 59.900 42.308 0.00 0.00 0.00 3.77
1528 4354 6.210522 AGGTCTAGGTGGTTATCTATTGGTT 58.789 40.000 0.00 0.00 0.00 3.67
1529 4355 5.789535 AGGTCTAGGTGGTTATCTATTGGT 58.210 41.667 0.00 0.00 0.00 3.67
1530 4356 5.839063 TGAGGTCTAGGTGGTTATCTATTGG 59.161 44.000 0.00 0.00 0.00 3.16
1531 4357 6.778069 TCTGAGGTCTAGGTGGTTATCTATTG 59.222 42.308 0.00 0.00 0.00 1.90
1532 4358 6.923670 TCTGAGGTCTAGGTGGTTATCTATT 58.076 40.000 0.00 0.00 0.00 1.73
1533 4359 6.333168 TCTCTGAGGTCTAGGTGGTTATCTAT 59.667 42.308 4.59 0.00 0.00 1.98
1534 4360 5.670818 TCTCTGAGGTCTAGGTGGTTATCTA 59.329 44.000 4.59 0.00 0.00 1.98
1535 4361 4.479056 TCTCTGAGGTCTAGGTGGTTATCT 59.521 45.833 4.59 0.00 0.00 1.98
1536 4362 4.794334 TCTCTGAGGTCTAGGTGGTTATC 58.206 47.826 4.59 0.00 0.00 1.75
1537 4363 4.883021 TCTCTGAGGTCTAGGTGGTTAT 57.117 45.455 4.59 0.00 0.00 1.89
1538 4364 4.669866 TTCTCTGAGGTCTAGGTGGTTA 57.330 45.455 4.59 0.00 0.00 2.85
1539 4365 3.544698 TTCTCTGAGGTCTAGGTGGTT 57.455 47.619 4.59 0.00 0.00 3.67
1540 4366 3.767309 ATTCTCTGAGGTCTAGGTGGT 57.233 47.619 4.59 0.00 0.00 4.16
1541 4367 5.428184 AAAATTCTCTGAGGTCTAGGTGG 57.572 43.478 4.59 0.00 0.00 4.61
1542 4368 7.065204 GCTTAAAAATTCTCTGAGGTCTAGGTG 59.935 40.741 4.59 0.00 0.00 4.00
1543 4369 7.106890 GCTTAAAAATTCTCTGAGGTCTAGGT 58.893 38.462 4.59 0.00 0.00 3.08
1544 4370 6.256757 CGCTTAAAAATTCTCTGAGGTCTAGG 59.743 42.308 4.59 0.00 0.00 3.02
1545 4371 6.237969 GCGCTTAAAAATTCTCTGAGGTCTAG 60.238 42.308 0.00 0.00 0.00 2.43
1546 4372 5.581085 GCGCTTAAAAATTCTCTGAGGTCTA 59.419 40.000 0.00 0.00 0.00 2.59
1547 4373 4.393371 GCGCTTAAAAATTCTCTGAGGTCT 59.607 41.667 0.00 0.00 0.00 3.85
1548 4374 4.653004 GCGCTTAAAAATTCTCTGAGGTC 58.347 43.478 0.00 0.00 0.00 3.85
1549 4375 3.125316 CGCGCTTAAAAATTCTCTGAGGT 59.875 43.478 5.56 0.00 0.00 3.85
1550 4376 3.674423 CGCGCTTAAAAATTCTCTGAGG 58.326 45.455 5.56 0.00 0.00 3.86
1551 4377 3.094294 GCGCGCTTAAAAATTCTCTGAG 58.906 45.455 26.67 0.00 0.00 3.35
1552 4378 2.159572 GGCGCGCTTAAAAATTCTCTGA 60.160 45.455 32.29 0.00 0.00 3.27
1553 4379 2.159517 AGGCGCGCTTAAAAATTCTCTG 60.160 45.455 32.29 0.00 0.00 3.35
1554 4380 2.084546 AGGCGCGCTTAAAAATTCTCT 58.915 42.857 32.29 11.82 0.00 3.10
1555 4381 2.544480 AGGCGCGCTTAAAAATTCTC 57.456 45.000 32.29 9.40 0.00 2.87
1556 4382 3.297830 AAAGGCGCGCTTAAAAATTCT 57.702 38.095 32.29 13.22 0.00 2.40
1557 4383 5.503689 TTAAAAGGCGCGCTTAAAAATTC 57.496 34.783 32.29 10.81 0.00 2.17
1558 4384 5.333492 GGTTTAAAAGGCGCGCTTAAAAATT 60.333 36.000 32.29 11.49 0.00 1.82
1559 4385 4.150980 GGTTTAAAAGGCGCGCTTAAAAAT 59.849 37.500 32.29 13.15 0.00 1.82
1560 4386 3.490155 GGTTTAAAAGGCGCGCTTAAAAA 59.510 39.130 32.29 20.16 0.00 1.94
1561 4387 3.051327 GGTTTAAAAGGCGCGCTTAAAA 58.949 40.909 32.29 20.51 0.00 1.52
1562 4388 2.663808 GGTTTAAAAGGCGCGCTTAAA 58.336 42.857 32.29 27.44 0.00 1.52
1563 4389 1.399984 CGGTTTAAAAGGCGCGCTTAA 60.400 47.619 32.29 23.53 0.00 1.85
1564 4390 0.166379 CGGTTTAAAAGGCGCGCTTA 59.834 50.000 32.29 18.89 0.00 3.09
1565 4391 1.081708 CGGTTTAAAAGGCGCGCTT 60.082 52.632 32.29 23.01 0.00 4.68
1566 4392 2.255881 ACGGTTTAAAAGGCGCGCT 61.256 52.632 32.29 14.07 0.00 5.92
1567 4393 2.078341 CACGGTTTAAAAGGCGCGC 61.078 57.895 25.94 25.94 0.00 6.86
1568 4394 0.723459 GTCACGGTTTAAAAGGCGCG 60.723 55.000 0.00 0.00 0.00 6.86
1569 4395 0.308376 TGTCACGGTTTAAAAGGCGC 59.692 50.000 0.00 0.00 0.00 6.53
1570 4396 1.868498 TCTGTCACGGTTTAAAAGGCG 59.132 47.619 0.00 0.00 0.00 5.52
1571 4397 2.225727 CCTCTGTCACGGTTTAAAAGGC 59.774 50.000 0.00 0.00 0.00 4.35
1572 4398 2.812011 CCCTCTGTCACGGTTTAAAAGG 59.188 50.000 0.00 0.00 0.00 3.11
1573 4399 3.735591 TCCCTCTGTCACGGTTTAAAAG 58.264 45.455 0.00 0.00 0.00 2.27
1574 4400 3.135167 ACTCCCTCTGTCACGGTTTAAAA 59.865 43.478 0.00 0.00 0.00 1.52
1575 4401 2.701951 ACTCCCTCTGTCACGGTTTAAA 59.298 45.455 0.00 0.00 0.00 1.52
1576 4402 2.322658 ACTCCCTCTGTCACGGTTTAA 58.677 47.619 0.00 0.00 0.00 1.52
1577 4403 2.005370 ACTCCCTCTGTCACGGTTTA 57.995 50.000 0.00 0.00 0.00 2.01
1578 4404 1.893801 CTACTCCCTCTGTCACGGTTT 59.106 52.381 0.00 0.00 0.00 3.27
1579 4405 1.203025 ACTACTCCCTCTGTCACGGTT 60.203 52.381 0.00 0.00 0.00 4.44
1580 4406 0.404812 ACTACTCCCTCTGTCACGGT 59.595 55.000 0.00 0.00 0.00 4.83
1581 4407 2.414994 TACTACTCCCTCTGTCACGG 57.585 55.000 0.00 0.00 0.00 4.94
1582 4408 3.280295 ACATACTACTCCCTCTGTCACG 58.720 50.000 0.00 0.00 0.00 4.35
1583 4409 9.908747 ATATATACATACTACTCCCTCTGTCAC 57.091 37.037 0.00 0.00 0.00 3.67
1584 4410 9.907229 CATATATACATACTACTCCCTCTGTCA 57.093 37.037 0.00 0.00 0.00 3.58
1586 4412 9.908747 GTCATATATACATACTACTCCCTCTGT 57.091 37.037 0.00 0.00 0.00 3.41
1587 4413 9.907229 TGTCATATATACATACTACTCCCTCTG 57.093 37.037 0.00 0.00 0.00 3.35
1588 4414 9.908747 GTGTCATATATACATACTACTCCCTCT 57.091 37.037 0.00 0.00 0.00 3.69
1589 4415 9.908747 AGTGTCATATATACATACTACTCCCTC 57.091 37.037 0.00 0.00 0.00 4.30
1635 4461 5.887035 AGTAAGAAGCGTCATACTCCTACTT 59.113 40.000 11.07 0.00 33.98 2.24
1637 4463 5.754543 AGTAAGAAGCGTCATACTCCTAC 57.245 43.478 11.07 0.00 33.98 3.18
1638 4464 8.461249 AATAAGTAAGAAGCGTCATACTCCTA 57.539 34.615 16.06 8.05 37.31 2.94
1639 4465 6.963083 ATAAGTAAGAAGCGTCATACTCCT 57.037 37.500 16.06 6.32 37.31 3.69
1640 4466 8.966194 GTAAATAAGTAAGAAGCGTCATACTCC 58.034 37.037 16.06 0.64 37.31 3.85
1641 4467 9.733219 AGTAAATAAGTAAGAAGCGTCATACTC 57.267 33.333 16.06 4.98 37.31 2.59
1654 4480 8.448615 GCCCTGTAACAACAGTAAATAAGTAAG 58.551 37.037 4.94 0.00 36.06 2.34
1811 4642 2.184322 GATCGGCGCAGGAGACAA 59.816 61.111 10.83 0.00 0.00 3.18
1827 4658 1.255667 GGGTAGCAAGGACGGTGAGA 61.256 60.000 0.00 0.00 0.00 3.27
1909 4740 2.669781 TCAGATTTGGATTGATGGCCC 58.330 47.619 0.00 0.00 0.00 5.80
1930 4770 2.092753 AGTCGGCATCCAATCTGAACAT 60.093 45.455 0.00 0.00 0.00 2.71
1946 4788 4.025396 ACGTATATGTTAGTCGTCAGTCGG 60.025 45.833 0.00 0.00 40.32 4.79
1947 4789 5.075670 ACGTATATGTTAGTCGTCAGTCG 57.924 43.478 0.00 0.00 41.41 4.18
1980 4894 1.489560 GGGGTCCGCCAGCCTATATT 61.490 60.000 0.00 0.00 43.03 1.28
1983 4897 4.815973 TGGGGTCCGCCAGCCTAT 62.816 66.667 3.03 0.00 43.03 2.57
2045 4959 1.475403 GGTGAAGACGAGATCCTCCA 58.525 55.000 0.00 0.00 0.00 3.86
2213 5127 1.093159 GATGACTAGGTCGGTGTCGT 58.907 55.000 0.00 0.00 34.95 4.34
2221 5135 1.481871 TTGGGGTCGATGACTAGGTC 58.518 55.000 0.00 0.00 32.47 3.85
2225 5139 2.740580 GCGAAATTGGGGTCGATGACTA 60.741 50.000 1.54 0.00 39.64 2.59
2226 5140 2.012051 GCGAAATTGGGGTCGATGACT 61.012 52.381 1.54 0.00 39.64 3.41
2358 5272 1.228245 GAACAGACCCTGCTTGGCA 60.228 57.895 0.00 0.00 34.37 4.92
2472 5386 3.285484 GTTGCTCATCTTCACCATGGAT 58.715 45.455 21.47 0.00 0.00 3.41
2541 5455 3.469863 GACACGGCTGTTGGGGACA 62.470 63.158 0.00 0.00 39.83 4.02
2591 5511 3.876198 CTTACATGGCGGCGGCAC 61.876 66.667 38.44 6.34 41.84 5.01
2655 5576 1.788886 CACCATGACACGATCATAGCG 59.211 52.381 6.61 0.00 46.96 4.26
2660 5581 1.824852 ACTAGCACCATGACACGATCA 59.175 47.619 0.00 0.00 43.13 2.92
2688 5616 8.588789 TCACTTTATTACAACATCACGATTACG 58.411 33.333 0.00 0.00 45.75 3.18
2694 5622 7.346208 TCACTCACTTTATTACAACATCACG 57.654 36.000 0.00 0.00 0.00 4.35
2711 5643 2.417933 GGCATGATGTCTGTTCACTCAC 59.582 50.000 0.00 0.00 0.00 3.51
2719 5655 0.700564 ACTTGGGGCATGATGTCTGT 59.299 50.000 0.00 0.00 0.00 3.41
2745 5681 4.097437 GTGATCACACTGATACGGTAGGAA 59.903 45.833 21.07 0.00 42.99 3.36
2753 5689 5.631096 CGATGTATGGTGATCACACTGATAC 59.369 44.000 26.47 22.19 45.32 2.24
2792 5728 3.928754 TCTGGAACCATAGTCCATAGCT 58.071 45.455 0.00 0.00 32.54 3.32
2794 5730 5.471456 GCATTTCTGGAACCATAGTCCATAG 59.529 44.000 0.00 0.00 32.54 2.23
2795 5731 5.132648 AGCATTTCTGGAACCATAGTCCATA 59.867 40.000 0.00 0.00 32.54 2.74
2796 5732 4.079558 AGCATTTCTGGAACCATAGTCCAT 60.080 41.667 0.00 0.00 32.54 3.41
2797 5733 3.266772 AGCATTTCTGGAACCATAGTCCA 59.733 43.478 0.00 0.00 0.00 4.02
2798 5734 3.891049 AGCATTTCTGGAACCATAGTCC 58.109 45.455 0.00 0.00 0.00 3.85
2799 5735 6.529220 AGATAGCATTTCTGGAACCATAGTC 58.471 40.000 0.00 0.00 0.00 2.59
2800 5736 6.100279 TGAGATAGCATTTCTGGAACCATAGT 59.900 38.462 0.00 0.00 0.00 2.12
2821 5757 1.547820 GCAGGATGACAGTGACTGAGA 59.452 52.381 20.97 5.15 39.69 3.27
2825 5761 2.495270 CAGTAGCAGGATGACAGTGACT 59.505 50.000 0.00 0.00 39.69 3.41
2841 5777 3.812262 TGCATTGACCATCATCCAGTAG 58.188 45.455 0.00 0.00 0.00 2.57
2843 5779 2.651455 CTGCATTGACCATCATCCAGT 58.349 47.619 0.00 0.00 0.00 4.00
2845 5781 1.341187 TGCTGCATTGACCATCATCCA 60.341 47.619 0.00 0.00 0.00 3.41
2846 5782 1.395635 TGCTGCATTGACCATCATCC 58.604 50.000 0.00 0.00 0.00 3.51
2910 5855 8.392372 TCTATATCATATCTATACACCGTGGC 57.608 38.462 3.03 0.00 0.00 5.01
2942 5933 1.344065 TTCACTCCGGTGTGGTACAT 58.656 50.000 30.56 0.00 44.52 2.29
2953 5944 1.743252 GAGCAGCCCTTTCACTCCG 60.743 63.158 0.00 0.00 0.00 4.63
2975 5966 1.288127 GCAACGTCCGTCTGTACCT 59.712 57.895 0.00 0.00 0.00 3.08
3015 6006 1.213013 GCGATCAGTGTGTCCGTCT 59.787 57.895 0.00 0.00 0.00 4.18
3024 6015 2.242572 CGGGCATCAGCGATCAGTG 61.243 63.158 0.00 0.00 43.41 3.66
3028 6019 2.031516 CCATCGGGCATCAGCGATC 61.032 63.158 0.00 0.00 43.41 3.69
3132 6140 0.169451 TCAGCTGCAACGCATTCATG 59.831 50.000 9.47 0.00 38.13 3.07
3163 6181 8.411991 AGGTATTTGTAGCTAACTAGAGGATC 57.588 38.462 0.00 0.00 0.00 3.36
3173 6191 6.129414 TGGGTTTGAGGTATTTGTAGCTAA 57.871 37.500 0.00 0.00 0.00 3.09
3184 6202 3.773418 TTCATCGTTGGGTTTGAGGTA 57.227 42.857 0.00 0.00 0.00 3.08
3187 6205 4.475944 GACAATTCATCGTTGGGTTTGAG 58.524 43.478 9.43 0.00 0.00 3.02
3198 6216 3.507786 TCCTACACACGACAATTCATCG 58.492 45.455 7.01 7.01 45.17 3.84
3199 6217 4.201589 CGTTCCTACACACGACAATTCATC 60.202 45.833 0.00 0.00 38.76 2.92
3200 6218 3.678072 CGTTCCTACACACGACAATTCAT 59.322 43.478 0.00 0.00 38.76 2.57
3201 6219 3.054166 CGTTCCTACACACGACAATTCA 58.946 45.455 0.00 0.00 38.76 2.57
3203 6221 1.796459 GCGTTCCTACACACGACAATT 59.204 47.619 0.00 0.00 38.76 2.32
3204 6222 1.269883 TGCGTTCCTACACACGACAAT 60.270 47.619 0.00 0.00 38.76 2.71
3208 6226 4.639824 GTGCGTTCCTACACACGA 57.360 55.556 0.00 0.00 38.76 4.35
3210 6228 1.289109 ATGCGTGCGTTCCTACACAC 61.289 55.000 0.00 0.00 36.57 3.82
3254 6278 7.392494 AAGAAAACCTGCTAACTAATTAGGC 57.608 36.000 16.73 10.69 38.64 3.93
3255 6279 9.841880 GAAAAGAAAACCTGCTAACTAATTAGG 57.158 33.333 16.73 2.08 38.64 2.69
3260 6284 8.691661 ATGAGAAAAGAAAACCTGCTAACTAA 57.308 30.769 0.00 0.00 0.00 2.24
3261 6285 8.691661 AATGAGAAAAGAAAACCTGCTAACTA 57.308 30.769 0.00 0.00 0.00 2.24
3262 6286 7.588497 AATGAGAAAAGAAAACCTGCTAACT 57.412 32.000 0.00 0.00 0.00 2.24
3263 6287 7.382488 GGAAATGAGAAAAGAAAACCTGCTAAC 59.618 37.037 0.00 0.00 0.00 2.34
3265 6289 6.293955 CGGAAATGAGAAAAGAAAACCTGCTA 60.294 38.462 0.00 0.00 0.00 3.49
3266 6290 5.507985 CGGAAATGAGAAAAGAAAACCTGCT 60.508 40.000 0.00 0.00 0.00 4.24
3267 6291 4.681483 CGGAAATGAGAAAAGAAAACCTGC 59.319 41.667 0.00 0.00 0.00 4.85
3268 6292 5.831997 ACGGAAATGAGAAAAGAAAACCTG 58.168 37.500 0.00 0.00 0.00 4.00
3296 6328 2.757980 TTTCCGGGCAGCTTGGGTAC 62.758 60.000 0.00 0.00 0.00 3.34
3299 6331 2.206536 TTTTTCCGGGCAGCTTGGG 61.207 57.895 0.00 0.00 0.00 4.12
3305 6337 1.268625 GTAACTGGTTTTTCCGGGCAG 59.731 52.381 0.00 0.00 46.44 4.85
3311 6343 6.642131 GGTATTTTTCGGTAACTGGTTTTTCC 59.358 38.462 0.00 0.00 0.00 3.13
3320 6352 7.769970 TGATATTTCCGGTATTTTTCGGTAACT 59.230 33.333 0.00 0.00 45.79 2.24
3336 6368 8.153479 TCAGATGGTAAAACATGATATTTCCG 57.847 34.615 0.00 0.00 0.00 4.30
3352 6384 9.190858 CATTTCGTTCAAAAATTTCAGATGGTA 57.809 29.630 0.00 0.00 0.00 3.25
3354 6386 8.075593 ACATTTCGTTCAAAAATTTCAGATGG 57.924 30.769 0.00 0.00 0.00 3.51
3364 6396 9.587772 TCCTTGAAATAACATTTCGTTCAAAAA 57.412 25.926 7.03 0.00 37.65 1.94
3365 6397 9.026074 GTCCTTGAAATAACATTTCGTTCAAAA 57.974 29.630 7.03 0.00 37.65 2.44
3366 6398 8.410141 AGTCCTTGAAATAACATTTCGTTCAAA 58.590 29.630 7.03 0.00 37.65 2.69
3373 6405 7.657336 TGTTCCAGTCCTTGAAATAACATTTC 58.343 34.615 4.96 4.96 0.00 2.17
3378 6410 6.635030 AGTTGTTCCAGTCCTTGAAATAAC 57.365 37.500 0.00 0.00 0.00 1.89
3383 6415 7.654022 AAATAAAGTTGTTCCAGTCCTTGAA 57.346 32.000 0.00 0.00 0.00 2.69
3391 6432 8.391075 TGAAGGTCTAAATAAAGTTGTTCCAG 57.609 34.615 0.00 0.00 0.00 3.86
3397 6438 7.035612 GCCCATTGAAGGTCTAAATAAAGTTG 58.964 38.462 0.00 0.00 0.00 3.16
3400 6441 5.069119 GGGCCCATTGAAGGTCTAAATAAAG 59.931 44.000 19.95 0.00 0.00 1.85
3410 6451 1.502527 TAACGGGGCCCATTGAAGGT 61.503 55.000 26.86 7.36 0.00 3.50
3424 6468 4.319984 GCAAAAACTGGTTCCTACTAACGG 60.320 45.833 0.00 0.00 0.00 4.44
3428 6472 4.440826 TGGCAAAAACTGGTTCCTACTA 57.559 40.909 0.00 0.00 0.00 1.82
3439 6483 5.120053 CGAACTCAAAAGTTTGGCAAAAACT 59.880 36.000 15.29 6.48 45.80 2.66
3456 6500 1.416401 AGCTTCAAGGGTTCGAACTCA 59.584 47.619 28.97 6.77 0.00 3.41
3465 6509 2.282745 GGCAGCAGCTTCAAGGGT 60.283 61.111 0.00 0.00 41.70 4.34
3506 6550 4.699637 TGAGAGGAAGAACAGCGTAAAAA 58.300 39.130 0.00 0.00 0.00 1.94
3507 6551 4.330944 TGAGAGGAAGAACAGCGTAAAA 57.669 40.909 0.00 0.00 0.00 1.52
3508 6552 4.537135 ATGAGAGGAAGAACAGCGTAAA 57.463 40.909 0.00 0.00 0.00 2.01
3509 6553 5.250235 CTATGAGAGGAAGAACAGCGTAA 57.750 43.478 0.00 0.00 0.00 3.18
3510 6554 4.902443 CTATGAGAGGAAGAACAGCGTA 57.098 45.455 0.00 0.00 0.00 4.42
3511 6555 3.791973 CTATGAGAGGAAGAACAGCGT 57.208 47.619 0.00 0.00 0.00 5.07
3522 6566 1.139853 GCCAAGTGTCCCTATGAGAGG 59.860 57.143 0.00 0.00 46.25 3.69
3523 6567 1.833630 TGCCAAGTGTCCCTATGAGAG 59.166 52.381 0.00 0.00 0.00 3.20
3524 6568 1.833630 CTGCCAAGTGTCCCTATGAGA 59.166 52.381 0.00 0.00 0.00 3.27
3525 6569 1.556911 ACTGCCAAGTGTCCCTATGAG 59.443 52.381 0.00 0.00 34.48 2.90
3526 6570 1.656587 ACTGCCAAGTGTCCCTATGA 58.343 50.000 0.00 0.00 34.48 2.15
3573 6622 2.649312 TGGATCCCACTCCTGTGATTTT 59.351 45.455 9.90 0.00 46.55 1.82
3575 6624 1.971149 TGGATCCCACTCCTGTGATT 58.029 50.000 9.90 0.00 46.55 2.57
3576 6625 2.174210 CAATGGATCCCACTCCTGTGAT 59.826 50.000 9.90 0.00 46.55 3.06
3577 6626 1.561076 CAATGGATCCCACTCCTGTGA 59.439 52.381 9.90 0.00 46.55 3.58
3578 6627 1.283029 ACAATGGATCCCACTCCTGTG 59.717 52.381 9.90 0.00 43.45 3.66
3579 6628 1.673767 ACAATGGATCCCACTCCTGT 58.326 50.000 9.90 0.63 35.80 4.00
3580 6629 2.814805 AACAATGGATCCCACTCCTG 57.185 50.000 9.90 0.00 35.80 3.86
3581 6630 6.786843 ATATAAACAATGGATCCCACTCCT 57.213 37.500 9.90 0.00 35.80 3.69
3582 6631 6.777580 ACAATATAAACAATGGATCCCACTCC 59.222 38.462 9.90 0.00 35.80 3.85
3583 6632 7.823745 ACAATATAAACAATGGATCCCACTC 57.176 36.000 9.90 0.00 35.80 3.51
3584 6633 8.061304 AGAACAATATAAACAATGGATCCCACT 58.939 33.333 9.90 0.00 35.80 4.00
3585 6634 8.237811 AGAACAATATAAACAATGGATCCCAC 57.762 34.615 9.90 0.00 35.80 4.61
3586 6635 8.837099 AAGAACAATATAAACAATGGATCCCA 57.163 30.769 9.90 0.00 38.19 4.37
3619 6668 3.580319 ACCCCTGTCAAGTGGCCC 61.580 66.667 0.00 0.00 0.00 5.80
3660 6710 0.819582 GGTCCCATGCCTGTGATTTG 59.180 55.000 0.00 0.00 0.00 2.32
3661 6711 0.324645 GGGTCCCATGCCTGTGATTT 60.325 55.000 1.78 0.00 0.00 2.17
3673 6723 2.946785 ACAACGTAAAAATGGGTCCCA 58.053 42.857 14.64 14.64 38.19 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.