Multiple sequence alignment - TraesCS2A01G573300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G573300 chr2A 100.000 3463 0 0 1 3463 768996070 768999532 0.000000e+00 6396.0
1 TraesCS2A01G573300 chr2A 85.833 120 17 0 1363 1482 55936350 55936469 1.010000e-25 128.0
2 TraesCS2A01G573300 chr2A 82.258 124 16 1 1363 1480 48840979 48840856 6.110000e-18 102.0
3 TraesCS2A01G573300 chr2A 91.489 47 4 0 1234 1280 742801447 742801493 8.020000e-07 65.8
4 TraesCS2A01G573300 chr2D 92.887 942 51 7 1765 2690 643870858 643871799 0.000000e+00 1354.0
5 TraesCS2A01G573300 chr2D 90.831 698 46 10 636 1317 643869877 643870572 0.000000e+00 918.0
6 TraesCS2A01G573300 chr2D 86.538 312 34 5 2931 3235 643871795 643872105 1.540000e-88 337.0
7 TraesCS2A01G573300 chr2D 89.326 178 19 0 3266 3443 643872297 643872474 1.250000e-54 224.0
8 TraesCS2A01G573300 chr2D 83.186 113 19 0 1372 1484 608796881 608796769 1.700000e-18 104.0
9 TraesCS2A01G573300 chr2D 93.846 65 4 0 1660 1724 643870796 643870860 7.910000e-17 99.0
10 TraesCS2A01G573300 chr2B 93.111 871 60 0 1660 2530 793177188 793176318 0.000000e+00 1277.0
11 TraesCS2A01G573300 chr2B 88.319 702 46 17 636 1317 793178081 793177396 0.000000e+00 809.0
12 TraesCS2A01G573300 chr2B 83.099 355 29 11 3111 3463 793174176 793173851 9.400000e-76 294.0
13 TraesCS2A01G573300 chr2B 80.612 98 17 1 2794 2891 712319904 712319999 1.330000e-09 75.0
14 TraesCS2A01G573300 chr2B 95.238 42 2 0 1247 1288 793337792 793337751 2.230000e-07 67.6
15 TraesCS2A01G573300 chr2B 100.000 29 0 0 1582 1610 731126563 731126591 2.000000e-03 54.7
16 TraesCS2A01G573300 chrUn 88.785 642 63 7 1 636 1796391 1797029 0.000000e+00 778.0
17 TraesCS2A01G573300 chrUn 88.785 642 63 7 1 636 245570822 245571460 0.000000e+00 778.0
18 TraesCS2A01G573300 chr7D 88.438 640 61 8 1 634 47056950 47056318 0.000000e+00 760.0
19 TraesCS2A01G573300 chr1D 88.383 637 67 4 1 633 414346675 414347308 0.000000e+00 760.0
20 TraesCS2A01G573300 chr1D 87.774 638 70 6 1 634 443681522 443680889 0.000000e+00 739.0
21 TraesCS2A01G573300 chr1D 79.245 583 116 3 1890 2471 143362547 143363125 5.380000e-108 401.0
22 TraesCS2A01G573300 chr1D 80.102 196 32 7 2715 2906 28065359 28065167 4.660000e-29 139.0
23 TraesCS2A01G573300 chr4D 88.419 639 61 10 1 636 7042031 7041403 0.000000e+00 758.0
24 TraesCS2A01G573300 chr4D 87.656 640 64 12 1 637 469857358 469857985 0.000000e+00 730.0
25 TraesCS2A01G573300 chr4D 89.333 75 8 0 1377 1451 111981621 111981695 1.020000e-15 95.3
26 TraesCS2A01G573300 chr7A 87.752 645 68 9 1 636 192896618 192895976 0.000000e+00 743.0
27 TraesCS2A01G573300 chr3D 87.956 631 67 6 1 626 284993737 284994363 0.000000e+00 736.0
28 TraesCS2A01G573300 chr3D 81.416 113 19 2 1175 1286 306087440 306087329 1.320000e-14 91.6
29 TraesCS2A01G573300 chr3D 96.774 31 1 0 1583 1613 74340457 74340427 6.000000e-03 52.8
30 TraesCS2A01G573300 chr1A 79.252 588 113 6 1890 2474 146630908 146630327 5.380000e-108 401.0
31 TraesCS2A01G573300 chr1B 79.074 583 117 3 1890 2471 192534947 192535525 2.500000e-106 396.0
32 TraesCS2A01G573300 chr7B 85.930 199 25 3 2712 2910 420086987 420086792 3.500000e-50 209.0
33 TraesCS2A01G573300 chr3B 84.314 153 19 4 2754 2904 703850199 703850348 1.000000e-30 145.0
34 TraesCS2A01G573300 chr3B 84.615 78 12 0 1397 1474 414166231 414166308 1.030000e-10 78.7
35 TraesCS2A01G573300 chr3B 94.737 38 2 0 2020 2057 246129487 246129524 3.730000e-05 60.2
36 TraesCS2A01G573300 chr3A 84.314 153 19 4 2754 2904 451660245 451660394 1.000000e-30 145.0
37 TraesCS2A01G573300 chr3A 84.667 150 18 4 2757 2904 451662777 451662631 1.000000e-30 145.0
38 TraesCS2A01G573300 chr3A 95.238 63 3 0 1363 1425 406629 406691 2.200000e-17 100.0
39 TraesCS2A01G573300 chr4A 89.423 104 11 0 1363 1466 3354358 3354461 7.800000e-27 132.0
40 TraesCS2A01G573300 chr4A 82.787 122 21 0 1363 1484 429228463 429228584 3.650000e-20 110.0
41 TraesCS2A01G573300 chr5A 84.874 119 16 2 1363 1480 370108014 370107897 6.070000e-23 119.0
42 TraesCS2A01G573300 chr6B 100.000 34 0 0 1821 1854 42231165 42231132 2.890000e-06 63.9
43 TraesCS2A01G573300 chr5D 100.000 29 0 0 1582 1610 345942885 345942857 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G573300 chr2A 768996070 768999532 3462 False 6396.000000 6396 100.000000 1 3463 1 chr2A.!!$F3 3462
1 TraesCS2A01G573300 chr2D 643869877 643872474 2597 False 586.400000 1354 90.685600 636 3443 5 chr2D.!!$F1 2807
2 TraesCS2A01G573300 chr2B 793173851 793178081 4230 True 793.333333 1277 88.176333 636 3463 3 chr2B.!!$R2 2827
3 TraesCS2A01G573300 chrUn 1796391 1797029 638 False 778.000000 778 88.785000 1 636 1 chrUn.!!$F1 635
4 TraesCS2A01G573300 chrUn 245570822 245571460 638 False 778.000000 778 88.785000 1 636 1 chrUn.!!$F2 635
5 TraesCS2A01G573300 chr7D 47056318 47056950 632 True 760.000000 760 88.438000 1 634 1 chr7D.!!$R1 633
6 TraesCS2A01G573300 chr1D 414346675 414347308 633 False 760.000000 760 88.383000 1 633 1 chr1D.!!$F2 632
7 TraesCS2A01G573300 chr1D 443680889 443681522 633 True 739.000000 739 87.774000 1 634 1 chr1D.!!$R2 633
8 TraesCS2A01G573300 chr1D 143362547 143363125 578 False 401.000000 401 79.245000 1890 2471 1 chr1D.!!$F1 581
9 TraesCS2A01G573300 chr4D 7041403 7042031 628 True 758.000000 758 88.419000 1 636 1 chr4D.!!$R1 635
10 TraesCS2A01G573300 chr4D 469857358 469857985 627 False 730.000000 730 87.656000 1 637 1 chr4D.!!$F2 636
11 TraesCS2A01G573300 chr7A 192895976 192896618 642 True 743.000000 743 87.752000 1 636 1 chr7A.!!$R1 635
12 TraesCS2A01G573300 chr3D 284993737 284994363 626 False 736.000000 736 87.956000 1 626 1 chr3D.!!$F1 625
13 TraesCS2A01G573300 chr1A 146630327 146630908 581 True 401.000000 401 79.252000 1890 2474 1 chr1A.!!$R1 584
14 TraesCS2A01G573300 chr1B 192534947 192535525 578 False 396.000000 396 79.074000 1890 2471 1 chr1B.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 938 0.531974 GTTGACGTGAGGAAGCCACA 60.532 55.0 0.0 0.0 34.36 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2690 2798 0.038166 GGTGGAGCTGTTGGATTGGA 59.962 55.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.592192 CGACATCGAGGCCGCCAT 62.592 66.667 13.15 0.00 43.02 4.40
52 53 3.459965 AGGCAGAGGCAGCTCGAG 61.460 66.667 8.45 8.45 43.71 4.04
81 82 0.968405 ATCAATGCCGCAACCAAAGT 59.032 45.000 0.00 0.00 0.00 2.66
83 84 1.539388 TCAATGCCGCAACCAAAGTAG 59.461 47.619 0.00 0.00 0.00 2.57
95 96 1.280457 CAAAGTAGAGGAGGTGGCCT 58.720 55.000 3.32 0.00 42.17 5.19
131 132 1.699083 TGGACTTGTCCAAGATGAGCA 59.301 47.619 18.98 0.00 40.79 4.26
243 245 1.505151 TTTGGAGGCTGGCATGGGTA 61.505 55.000 3.38 0.00 0.00 3.69
247 249 2.044806 GAGGCTGGCATGGGTATCGT 62.045 60.000 3.38 0.00 0.00 3.73
351 353 1.349688 TGCCGGTGAGGACAACTATTT 59.650 47.619 1.90 0.00 45.00 1.40
415 418 3.414700 GCTCTGTTGTCGGCGTGG 61.415 66.667 6.85 0.00 0.00 4.94
449 454 1.065126 GCCTGATGAACTAGGGCTTGT 60.065 52.381 0.00 0.00 39.68 3.16
571 578 2.308690 GGATACGACTCTACTGCCCTT 58.691 52.381 0.00 0.00 0.00 3.95
575 582 0.684805 CGACTCTACTGCCCTTCCCT 60.685 60.000 0.00 0.00 0.00 4.20
582 589 1.912862 ACTGCCCTTCCCTAATGGAT 58.087 50.000 0.00 0.00 44.66 3.41
602 610 2.536761 AGAATCCGGACAAAACGACA 57.463 45.000 6.12 0.00 0.00 4.35
612 620 4.495019 CGGACAAAACGACATCTGTTTGAA 60.495 41.667 9.74 0.00 39.36 2.69
649 657 1.442148 CCTAACTACTGGCCTCGGC 59.558 63.158 3.32 0.00 41.06 5.54
658 666 2.508663 GGCCTCGGCGTACTGTTC 60.509 66.667 6.85 0.00 43.06 3.18
661 669 1.080974 CCTCGGCGTACTGTTCGTT 60.081 57.895 6.85 0.00 0.00 3.85
728 736 4.388773 CACAAGTACATTACGCACATGACT 59.611 41.667 0.00 0.00 0.00 3.41
826 837 1.373570 GTTTTGGATCTCTGCTCCCG 58.626 55.000 0.00 0.00 31.32 5.14
838 850 2.102588 TCTGCTCCCGCTTAATTACTCC 59.897 50.000 0.00 0.00 36.97 3.85
856 868 2.663602 CTCCGACGACTTTGATGTCAAG 59.336 50.000 0.00 0.00 37.15 3.02
858 870 1.792367 CGACGACTTTGATGTCAAGCA 59.208 47.619 0.00 0.00 37.15 3.91
884 899 5.811399 ATCGATCGATCATCTAGTTCCTC 57.189 43.478 24.60 0.00 0.00 3.71
898 913 8.816894 CATCTAGTTCCTCTATAAATAAGGGCA 58.183 37.037 0.00 0.00 0.00 5.36
901 916 7.880265 AGTTCCTCTATAAATAAGGGCATCT 57.120 36.000 0.00 0.00 0.00 2.90
922 938 0.531974 GTTGACGTGAGGAAGCCACA 60.532 55.000 0.00 0.00 34.36 4.17
926 942 1.374758 CGTGAGGAAGCCACACTCC 60.375 63.158 11.28 0.00 41.70 3.85
927 943 1.754745 GTGAGGAAGCCACACTCCA 59.245 57.895 6.76 0.00 40.91 3.86
938 957 1.339438 CCACACTCCATTGCAGCTAGT 60.339 52.381 0.00 0.00 0.00 2.57
939 958 1.736126 CACACTCCATTGCAGCTAGTG 59.264 52.381 15.05 15.05 42.53 2.74
965 984 3.283751 AGTAGCACTAGTACTCTGCAGG 58.716 50.000 21.59 7.28 0.00 4.85
966 985 0.820871 AGCACTAGTACTCTGCAGGC 59.179 55.000 21.59 5.76 0.00 4.85
967 986 0.532573 GCACTAGTACTCTGCAGGCA 59.467 55.000 15.13 0.00 0.00 4.75
968 987 1.737363 GCACTAGTACTCTGCAGGCAC 60.737 57.143 15.13 9.37 0.00 5.01
969 988 1.821753 CACTAGTACTCTGCAGGCACT 59.178 52.381 15.13 15.97 43.88 4.40
1313 1341 7.789202 TTTAATCCAGCTAGCTAGATCTCAT 57.211 36.000 23.34 12.07 0.00 2.90
1314 1342 8.885693 TTTAATCCAGCTAGCTAGATCTCATA 57.114 34.615 23.34 11.17 0.00 2.15
1316 1344 7.976414 AATCCAGCTAGCTAGATCTCATATT 57.024 36.000 23.34 6.61 0.00 1.28
1318 1346 9.486123 AATCCAGCTAGCTAGATCTCATATTAA 57.514 33.333 23.34 0.00 0.00 1.40
1319 1347 8.885693 TCCAGCTAGCTAGATCTCATATTAAA 57.114 34.615 25.15 0.00 0.00 1.52
1320 1348 8.965819 TCCAGCTAGCTAGATCTCATATTAAAG 58.034 37.037 25.15 1.35 0.00 1.85
1328 1393 9.771534 GCTAGATCTCATATTAAAGGAAAGTGT 57.228 33.333 0.00 0.00 0.00 3.55
1343 1408 7.962995 AGGAAAGTGTGATCTATCTAACTGA 57.037 36.000 0.00 0.00 0.00 3.41
1344 1409 8.546083 AGGAAAGTGTGATCTATCTAACTGAT 57.454 34.615 0.00 0.00 39.11 2.90
1345 1410 8.420222 AGGAAAGTGTGATCTATCTAACTGATG 58.580 37.037 0.00 0.00 36.65 3.07
1346 1411 7.655328 GGAAAGTGTGATCTATCTAACTGATGG 59.345 40.741 0.00 0.00 36.65 3.51
1349 1414 6.098838 AGTGTGATCTATCTAACTGATGGCAA 59.901 38.462 0.00 0.00 36.65 4.52
1350 1415 6.763135 GTGTGATCTATCTAACTGATGGCAAA 59.237 38.462 0.00 0.00 36.65 3.68
1351 1416 6.988580 TGTGATCTATCTAACTGATGGCAAAG 59.011 38.462 0.00 0.00 36.65 2.77
1352 1417 7.147672 TGTGATCTATCTAACTGATGGCAAAGA 60.148 37.037 7.48 0.00 36.65 2.52
1359 1424 6.662755 TCTAACTGATGGCAAAGATGGTAAT 58.337 36.000 7.48 0.00 0.00 1.89
1361 1426 3.956199 ACTGATGGCAAAGATGGTAATGG 59.044 43.478 7.48 0.00 0.00 3.16
1363 1428 5.122707 TGATGGCAAAGATGGTAATGGTA 57.877 39.130 0.00 0.00 0.00 3.25
1364 1429 4.887071 TGATGGCAAAGATGGTAATGGTAC 59.113 41.667 0.00 0.00 0.00 3.34
1365 1430 4.584638 TGGCAAAGATGGTAATGGTACT 57.415 40.909 0.00 0.00 0.00 2.73
1370 1435 5.755849 CAAAGATGGTAATGGTACTCCCTT 58.244 41.667 0.00 0.00 0.00 3.95
1381 1446 2.603953 GTACTCCCTTCGTCCGAAAAG 58.396 52.381 3.52 4.54 33.34 2.27
1389 1454 2.144482 TCGTCCGAAAAGACTTGTCC 57.856 50.000 0.00 0.00 34.46 4.02
1390 1455 1.145803 CGTCCGAAAAGACTTGTCCC 58.854 55.000 0.00 0.00 34.46 4.46
1391 1456 1.539496 CGTCCGAAAAGACTTGTCCCA 60.539 52.381 0.00 0.00 34.46 4.37
1393 1458 3.146847 GTCCGAAAAGACTTGTCCCAAT 58.853 45.455 0.00 0.00 33.79 3.16
1394 1459 3.188667 GTCCGAAAAGACTTGTCCCAATC 59.811 47.826 0.00 0.00 33.79 2.67
1395 1460 3.072476 TCCGAAAAGACTTGTCCCAATCT 59.928 43.478 0.00 0.00 0.00 2.40
1398 1463 4.275936 CGAAAAGACTTGTCCCAATCTTGT 59.724 41.667 0.00 0.00 31.82 3.16
1399 1464 5.560953 CGAAAAGACTTGTCCCAATCTTGTC 60.561 44.000 0.00 0.00 33.70 3.18
1400 1465 4.713792 AAGACTTGTCCCAATCTTGTCT 57.286 40.909 0.00 0.00 35.20 3.41
1401 1466 4.278975 AGACTTGTCCCAATCTTGTCTC 57.721 45.455 0.00 0.00 0.00 3.36
1402 1467 3.906846 AGACTTGTCCCAATCTTGTCTCT 59.093 43.478 0.00 0.00 0.00 3.10
1403 1468 4.349342 AGACTTGTCCCAATCTTGTCTCTT 59.651 41.667 0.00 0.00 0.00 2.85
1406 1471 6.601332 ACTTGTCCCAATCTTGTCTCTTAAA 58.399 36.000 0.00 0.00 0.00 1.52
1407 1472 7.234355 ACTTGTCCCAATCTTGTCTCTTAAAT 58.766 34.615 0.00 0.00 0.00 1.40
1409 1474 5.945784 TGTCCCAATCTTGTCTCTTAAATGG 59.054 40.000 0.00 0.00 0.00 3.16
1410 1475 6.180472 GTCCCAATCTTGTCTCTTAAATGGA 58.820 40.000 0.00 0.00 0.00 3.41
1411 1476 6.830838 GTCCCAATCTTGTCTCTTAAATGGAT 59.169 38.462 0.00 0.00 0.00 3.41
1412 1477 6.830324 TCCCAATCTTGTCTCTTAAATGGATG 59.170 38.462 0.00 0.00 0.00 3.51
1413 1478 6.604795 CCCAATCTTGTCTCTTAAATGGATGT 59.395 38.462 0.00 0.00 0.00 3.06
1414 1479 7.775093 CCCAATCTTGTCTCTTAAATGGATGTA 59.225 37.037 0.00 0.00 0.00 2.29
1415 1480 9.347240 CCAATCTTGTCTCTTAAATGGATGTAT 57.653 33.333 0.00 0.00 0.00 2.29
1420 1485 9.202273 CTTGTCTCTTAAATGGATGTATCTAGC 57.798 37.037 0.00 0.00 0.00 3.42
1421 1486 8.250143 TGTCTCTTAAATGGATGTATCTAGCA 57.750 34.615 0.00 0.00 0.00 3.49
1422 1487 8.144478 TGTCTCTTAAATGGATGTATCTAGCAC 58.856 37.037 0.00 0.00 0.00 4.40
1423 1488 8.364142 GTCTCTTAAATGGATGTATCTAGCACT 58.636 37.037 0.00 0.00 0.00 4.40
1424 1489 9.588096 TCTCTTAAATGGATGTATCTAGCACTA 57.412 33.333 0.00 0.00 0.00 2.74
1430 1495 8.427902 AATGGATGTATCTAGCACTATCTTGA 57.572 34.615 0.00 0.00 0.00 3.02
1431 1496 8.606754 ATGGATGTATCTAGCACTATCTTGAT 57.393 34.615 0.00 0.00 34.07 2.57
1432 1497 7.834803 TGGATGTATCTAGCACTATCTTGATG 58.165 38.462 0.00 0.00 32.41 3.07
1433 1498 6.756074 GGATGTATCTAGCACTATCTTGATGC 59.244 42.308 0.00 0.00 39.74 3.91
1443 1508 7.754069 GCACTATCTTGATGCTAGATACATC 57.246 40.000 0.00 0.00 43.46 3.06
1444 1509 7.546358 GCACTATCTTGATGCTAGATACATCT 58.454 38.462 9.39 0.00 43.53 2.90
1445 1510 8.681806 GCACTATCTTGATGCTAGATACATCTA 58.318 37.037 9.39 0.00 43.53 1.98
1453 1518 9.716531 TTGATGCTAGATACATCTATTTGAAGG 57.283 33.333 9.39 0.00 43.53 3.46
1454 1519 8.874156 TGATGCTAGATACATCTATTTGAAGGT 58.126 33.333 9.39 0.00 43.53 3.50
1455 1520 9.717942 GATGCTAGATACATCTATTTGAAGGTT 57.282 33.333 0.00 0.00 40.63 3.50
1475 1540 6.531021 AGGTTAATCTTTTTCTGACGGAGAA 58.469 36.000 0.00 0.00 39.05 2.87
1494 1559 7.866393 ACGGAGAAAGTATTATGGTAAGATTCG 59.134 37.037 0.00 0.00 0.00 3.34
1501 1566 9.832445 AAGTATTATGGTAAGATTCGTCACAAT 57.168 29.630 0.00 0.00 0.00 2.71
1502 1567 9.261180 AGTATTATGGTAAGATTCGTCACAATG 57.739 33.333 0.00 0.00 0.00 2.82
1503 1568 9.256477 GTATTATGGTAAGATTCGTCACAATGA 57.744 33.333 0.00 0.00 0.00 2.57
1509 1574 9.004717 TGGTAAGATTCGTCACAATGAAAAATA 57.995 29.630 0.00 0.00 34.18 1.40
1553 1618 9.999660 TTACCTTGGTCTTAAAGTTTTTGTTTT 57.000 25.926 0.00 0.00 0.00 2.43
1555 1620 9.647797 ACCTTGGTCTTAAAGTTTTTGTTTTAG 57.352 29.630 0.00 0.00 0.00 1.85
1556 1621 9.863845 CCTTGGTCTTAAAGTTTTTGTTTTAGA 57.136 29.630 0.00 0.00 0.00 2.10
1623 1688 7.681903 AGAATTTTAGGAGCGTAAAATGTACG 58.318 34.615 16.82 0.00 40.26 3.67
1644 1711 9.328845 TGTACGCATATATATCGACTAATGGTA 57.671 33.333 16.39 1.01 0.00 3.25
1697 1783 0.107831 TGGTTGTACAGGGCTGTGAC 59.892 55.000 0.00 0.00 44.63 3.67
1721 1807 1.891616 GGTCCTTCTGACGGGAGAC 59.108 63.158 0.00 0.00 45.46 3.36
1733 1819 4.863925 GGAGACGGCAGCGAGCTC 62.864 72.222 2.73 2.73 44.79 4.09
1748 1834 2.436646 CTCCAGTTGCCGCCGAAT 60.437 61.111 0.00 0.00 0.00 3.34
1751 1837 2.753966 CCAGTTGCCGCCGAATCTG 61.754 63.158 0.00 0.00 0.00 2.90
1760 1846 1.447838 GCCGAATCTGACGCTCCAA 60.448 57.895 0.00 0.00 0.00 3.53
2018 2104 0.539986 ATACCCGCAACCTCGACAAT 59.460 50.000 0.00 0.00 0.00 2.71
2039 2125 3.800863 GACCTCGTCGCGCTCTCA 61.801 66.667 5.56 0.00 0.00 3.27
2042 2128 3.805307 CTCGTCGCGCTCTCAGGT 61.805 66.667 5.56 0.00 0.00 4.00
2255 2341 2.811317 GACCAGAAGCTCACCGCG 60.811 66.667 0.00 0.00 45.59 6.46
2288 2374 1.339929 GAATGGGTTGTCAACGGCTTT 59.660 47.619 9.57 1.32 0.00 3.51
2327 2413 2.203337 TTCGGCCAGTTTGCTGCT 60.203 55.556 2.24 0.00 41.26 4.24
2621 2729 6.204882 GCCTCGGTGTGCTATAATTCTTTTAT 59.795 38.462 0.00 0.00 0.00 1.40
2635 2743 7.553504 AATTCTTTTATAGGGCCAAAACAGT 57.446 32.000 6.18 0.00 0.00 3.55
2644 2752 3.118775 AGGGCCAAAACAGTCTTTTTGTC 60.119 43.478 6.18 6.29 42.54 3.18
2645 2753 3.194861 GGCCAAAACAGTCTTTTTGTCC 58.805 45.455 0.00 9.92 42.54 4.02
2669 2777 2.607187 GGAGCGACGAAGAGATTTTCA 58.393 47.619 0.00 0.00 0.00 2.69
2671 2779 3.432252 GGAGCGACGAAGAGATTTTCAAA 59.568 43.478 0.00 0.00 0.00 2.69
2685 2793 8.177013 AGAGATTTTCAAAATGCACAAAAACAC 58.823 29.630 0.00 0.00 0.00 3.32
2686 2794 6.960431 AGATTTTCAAAATGCACAAAAACACG 59.040 30.769 0.00 0.00 0.00 4.49
2687 2795 4.590400 TTCAAAATGCACAAAAACACGG 57.410 36.364 0.00 0.00 0.00 4.94
2688 2796 2.349886 TCAAAATGCACAAAAACACGGC 59.650 40.909 0.00 0.00 0.00 5.68
2689 2797 0.926846 AAATGCACAAAAACACGGCG 59.073 45.000 4.80 4.80 0.00 6.46
2690 2798 0.179124 AATGCACAAAAACACGGCGT 60.179 45.000 6.77 6.77 0.00 5.68
2691 2799 0.593773 ATGCACAAAAACACGGCGTC 60.594 50.000 10.85 0.00 0.00 5.19
2692 2800 1.942223 GCACAAAAACACGGCGTCC 60.942 57.895 10.85 0.00 0.00 4.79
2693 2801 1.429825 CACAAAAACACGGCGTCCA 59.570 52.632 10.85 0.00 0.00 4.02
2694 2802 0.179161 CACAAAAACACGGCGTCCAA 60.179 50.000 10.85 0.00 0.00 3.53
2695 2803 0.741915 ACAAAAACACGGCGTCCAAT 59.258 45.000 10.85 0.00 0.00 3.16
2696 2804 1.268845 ACAAAAACACGGCGTCCAATC 60.269 47.619 10.85 0.00 0.00 2.67
2697 2805 0.312729 AAAAACACGGCGTCCAATCC 59.687 50.000 10.85 0.00 0.00 3.01
2698 2806 0.820074 AAAACACGGCGTCCAATCCA 60.820 50.000 10.85 0.00 0.00 3.41
2699 2807 0.820074 AAACACGGCGTCCAATCCAA 60.820 50.000 10.85 0.00 0.00 3.53
2700 2808 1.512156 AACACGGCGTCCAATCCAAC 61.512 55.000 10.85 0.00 0.00 3.77
2701 2809 1.963855 CACGGCGTCCAATCCAACA 60.964 57.895 10.85 0.00 0.00 3.33
2702 2810 1.671054 ACGGCGTCCAATCCAACAG 60.671 57.895 6.77 0.00 0.00 3.16
2703 2811 2.877691 GGCGTCCAATCCAACAGC 59.122 61.111 0.00 0.00 0.00 4.40
2704 2812 1.675641 GGCGTCCAATCCAACAGCT 60.676 57.895 0.00 0.00 0.00 4.24
2705 2813 1.648467 GGCGTCCAATCCAACAGCTC 61.648 60.000 0.00 0.00 0.00 4.09
2706 2814 1.648467 GCGTCCAATCCAACAGCTCC 61.648 60.000 0.00 0.00 0.00 4.70
2707 2815 0.321564 CGTCCAATCCAACAGCTCCA 60.322 55.000 0.00 0.00 0.00 3.86
2708 2816 1.168714 GTCCAATCCAACAGCTCCAC 58.831 55.000 0.00 0.00 0.00 4.02
2709 2817 0.038166 TCCAATCCAACAGCTCCACC 59.962 55.000 0.00 0.00 0.00 4.61
2710 2818 0.038744 CCAATCCAACAGCTCCACCT 59.961 55.000 0.00 0.00 0.00 4.00
2711 2819 1.171308 CAATCCAACAGCTCCACCTG 58.829 55.000 0.00 0.00 38.78 4.00
2712 2820 0.610232 AATCCAACAGCTCCACCTGC 60.610 55.000 0.00 0.00 36.29 4.85
2713 2821 1.782201 ATCCAACAGCTCCACCTGCA 61.782 55.000 0.00 0.00 36.29 4.41
2714 2822 2.263741 CCAACAGCTCCACCTGCAC 61.264 63.158 0.00 0.00 36.29 4.57
2715 2823 1.526686 CAACAGCTCCACCTGCACA 60.527 57.895 0.00 0.00 36.29 4.57
2716 2824 1.228063 AACAGCTCCACCTGCACAG 60.228 57.895 0.00 0.00 36.29 3.66
2717 2825 1.987807 AACAGCTCCACCTGCACAGT 61.988 55.000 0.00 0.00 36.29 3.55
2718 2826 1.964891 CAGCTCCACCTGCACAGTG 60.965 63.158 0.00 0.00 0.00 3.66
2719 2827 2.670934 GCTCCACCTGCACAGTGG 60.671 66.667 20.64 20.64 39.48 4.00
2720 2828 2.670934 CTCCACCTGCACAGTGGC 60.671 66.667 21.52 0.00 38.10 5.01
2721 2829 4.624364 TCCACCTGCACAGTGGCG 62.624 66.667 21.52 4.68 38.10 5.69
2723 2831 4.624364 CACCTGCACAGTGGCGGA 62.624 66.667 12.44 0.00 42.91 5.54
2724 2832 4.320456 ACCTGCACAGTGGCGGAG 62.320 66.667 12.44 5.40 42.91 4.63
2737 2845 3.981308 CGGAGCGTTGTTGGGAAT 58.019 55.556 0.00 0.00 0.00 3.01
2738 2846 3.146783 CGGAGCGTTGTTGGGAATA 57.853 52.632 0.00 0.00 0.00 1.75
2739 2847 1.444836 CGGAGCGTTGTTGGGAATAA 58.555 50.000 0.00 0.00 0.00 1.40
2740 2848 2.014128 CGGAGCGTTGTTGGGAATAAT 58.986 47.619 0.00 0.00 0.00 1.28
2741 2849 2.422127 CGGAGCGTTGTTGGGAATAATT 59.578 45.455 0.00 0.00 0.00 1.40
2742 2850 3.119637 CGGAGCGTTGTTGGGAATAATTT 60.120 43.478 0.00 0.00 0.00 1.82
2743 2851 4.421058 GGAGCGTTGTTGGGAATAATTTC 58.579 43.478 0.00 0.00 0.00 2.17
2744 2852 4.091453 AGCGTTGTTGGGAATAATTTCG 57.909 40.909 0.00 0.00 32.28 3.46
2745 2853 3.119637 AGCGTTGTTGGGAATAATTTCGG 60.120 43.478 0.00 0.00 32.28 4.30
2746 2854 3.765026 CGTTGTTGGGAATAATTTCGGG 58.235 45.455 0.00 0.00 32.28 5.14
2747 2855 3.517602 GTTGTTGGGAATAATTTCGGGC 58.482 45.455 0.00 0.00 32.28 6.13
2748 2856 2.104170 TGTTGGGAATAATTTCGGGCC 58.896 47.619 0.00 0.00 32.28 5.80
2749 2857 1.411246 GTTGGGAATAATTTCGGGCCC 59.589 52.381 13.57 13.57 36.11 5.80
2750 2858 0.466555 TGGGAATAATTTCGGGCCCG 60.467 55.000 39.13 39.13 38.42 6.13
2751 2859 1.176619 GGGAATAATTTCGGGCCCGG 61.177 60.000 42.36 24.68 40.25 5.73
2752 2860 1.176619 GGAATAATTTCGGGCCCGGG 61.177 60.000 42.36 19.09 40.25 5.73
2753 2861 1.802337 GAATAATTTCGGGCCCGGGC 61.802 60.000 42.36 38.57 40.25 6.13
2784 2892 7.712204 TCCAGGAGGAAAATTTACCAAATAC 57.288 36.000 0.00 0.00 42.23 1.89
2785 2893 7.242359 TCCAGGAGGAAAATTTACCAAATACA 58.758 34.615 0.00 0.00 42.23 2.29
2786 2894 7.177744 TCCAGGAGGAAAATTTACCAAATACAC 59.822 37.037 0.00 0.00 42.23 2.90
2787 2895 7.178451 CCAGGAGGAAAATTTACCAAATACACT 59.822 37.037 0.00 0.00 36.89 3.55
2788 2896 8.585018 CAGGAGGAAAATTTACCAAATACACTT 58.415 33.333 0.00 0.00 0.00 3.16
2789 2897 9.816787 AGGAGGAAAATTTACCAAATACACTTA 57.183 29.630 0.00 0.00 0.00 2.24
2790 2898 9.850628 GGAGGAAAATTTACCAAATACACTTAC 57.149 33.333 0.00 0.00 0.00 2.34
2799 2907 9.953565 TTTACCAAATACACTTACTAATCTGCT 57.046 29.630 0.00 0.00 0.00 4.24
2820 2928 8.740906 TCTGCTAATTACTCTATTAATCCTCCG 58.259 37.037 0.00 0.00 0.00 4.63
2821 2929 7.837863 TGCTAATTACTCTATTAATCCTCCGG 58.162 38.462 0.00 0.00 0.00 5.14
2822 2930 6.757478 GCTAATTACTCTATTAATCCTCCGGC 59.243 42.308 0.00 0.00 0.00 6.13
2823 2931 4.778534 TTACTCTATTAATCCTCCGGCG 57.221 45.455 0.00 0.00 0.00 6.46
2824 2932 2.595238 ACTCTATTAATCCTCCGGCGT 58.405 47.619 6.01 0.00 0.00 5.68
2825 2933 3.759581 ACTCTATTAATCCTCCGGCGTA 58.240 45.455 6.01 0.00 0.00 4.42
2826 2934 4.342359 ACTCTATTAATCCTCCGGCGTAT 58.658 43.478 6.01 0.00 0.00 3.06
2827 2935 4.398673 ACTCTATTAATCCTCCGGCGTATC 59.601 45.833 6.01 0.00 0.00 2.24
2828 2936 4.597004 TCTATTAATCCTCCGGCGTATCT 58.403 43.478 6.01 0.00 0.00 1.98
2829 2937 3.594603 ATTAATCCTCCGGCGTATCTG 57.405 47.619 6.01 0.00 0.00 2.90
2830 2938 2.281539 TAATCCTCCGGCGTATCTGA 57.718 50.000 6.01 0.00 0.00 3.27
2831 2939 1.633774 AATCCTCCGGCGTATCTGAT 58.366 50.000 6.01 0.00 0.00 2.90
2832 2940 1.178276 ATCCTCCGGCGTATCTGATC 58.822 55.000 6.01 0.00 0.00 2.92
2833 2941 0.179001 TCCTCCGGCGTATCTGATCA 60.179 55.000 6.01 0.00 0.00 2.92
2834 2942 0.039074 CCTCCGGCGTATCTGATCAC 60.039 60.000 6.01 0.00 0.00 3.06
2835 2943 0.039074 CTCCGGCGTATCTGATCACC 60.039 60.000 6.01 0.00 0.00 4.02
2836 2944 1.006102 CCGGCGTATCTGATCACCC 60.006 63.158 6.01 0.00 0.00 4.61
2837 2945 1.464376 CCGGCGTATCTGATCACCCT 61.464 60.000 6.01 0.00 0.00 4.34
2838 2946 1.244816 CGGCGTATCTGATCACCCTA 58.755 55.000 0.00 0.00 0.00 3.53
2839 2947 1.200252 CGGCGTATCTGATCACCCTAG 59.800 57.143 0.00 0.00 0.00 3.02
2840 2948 1.067495 GGCGTATCTGATCACCCTAGC 60.067 57.143 0.00 0.00 0.00 3.42
2841 2949 1.067495 GCGTATCTGATCACCCTAGCC 60.067 57.143 0.00 0.00 0.00 3.93
2842 2950 2.520069 CGTATCTGATCACCCTAGCCT 58.480 52.381 0.00 0.00 0.00 4.58
2843 2951 2.894126 CGTATCTGATCACCCTAGCCTT 59.106 50.000 0.00 0.00 0.00 4.35
2844 2952 3.322254 CGTATCTGATCACCCTAGCCTTT 59.678 47.826 0.00 0.00 0.00 3.11
2845 2953 4.202264 CGTATCTGATCACCCTAGCCTTTT 60.202 45.833 0.00 0.00 0.00 2.27
2846 2954 4.870021 ATCTGATCACCCTAGCCTTTTT 57.130 40.909 0.00 0.00 0.00 1.94
2869 2977 4.970662 ATGTCATACACACTCATTTGGC 57.029 40.909 0.00 0.00 38.04 4.52
2870 2978 4.019792 TGTCATACACACTCATTTGGCT 57.980 40.909 0.00 0.00 0.00 4.75
2871 2979 4.002982 TGTCATACACACTCATTTGGCTC 58.997 43.478 0.00 0.00 0.00 4.70
2872 2980 3.375299 GTCATACACACTCATTTGGCTCC 59.625 47.826 0.00 0.00 0.00 4.70
2873 2981 2.489938 TACACACTCATTTGGCTCCC 57.510 50.000 0.00 0.00 0.00 4.30
2874 2982 0.251341 ACACACTCATTTGGCTCCCC 60.251 55.000 0.00 0.00 0.00 4.81
2875 2983 0.967380 CACACTCATTTGGCTCCCCC 60.967 60.000 0.00 0.00 0.00 5.40
2876 2984 1.142688 ACACTCATTTGGCTCCCCCT 61.143 55.000 0.00 0.00 0.00 4.79
2877 2985 0.918983 CACTCATTTGGCTCCCCCTA 59.081 55.000 0.00 0.00 0.00 3.53
2878 2986 1.284785 CACTCATTTGGCTCCCCCTAA 59.715 52.381 0.00 0.00 32.88 2.69
2879 2987 2.091665 CACTCATTTGGCTCCCCCTAAT 60.092 50.000 0.00 0.00 39.23 1.73
2880 2988 3.138283 CACTCATTTGGCTCCCCCTAATA 59.862 47.826 0.00 0.00 37.00 0.98
2881 2989 3.990245 ACTCATTTGGCTCCCCCTAATAT 59.010 43.478 0.00 0.00 37.00 1.28
2882 2990 4.420214 ACTCATTTGGCTCCCCCTAATATT 59.580 41.667 0.00 0.00 37.00 1.28
2883 2991 5.103086 ACTCATTTGGCTCCCCCTAATATTT 60.103 40.000 0.00 0.00 37.00 1.40
2884 2992 5.147032 TCATTTGGCTCCCCCTAATATTTG 58.853 41.667 0.00 0.00 37.00 2.32
2885 2993 4.890499 TTTGGCTCCCCCTAATATTTGA 57.110 40.909 0.00 0.00 0.00 2.69
2886 2994 5.417170 TTTGGCTCCCCCTAATATTTGAT 57.583 39.130 0.00 0.00 0.00 2.57
2887 2995 5.417170 TTGGCTCCCCCTAATATTTGATT 57.583 39.130 0.00 0.00 0.00 2.57
2888 2996 4.998051 TGGCTCCCCCTAATATTTGATTC 58.002 43.478 0.00 0.00 0.00 2.52
2889 2997 4.418526 TGGCTCCCCCTAATATTTGATTCA 59.581 41.667 0.00 0.00 0.00 2.57
2890 2998 4.767409 GGCTCCCCCTAATATTTGATTCAC 59.233 45.833 0.00 0.00 0.00 3.18
2891 2999 4.455877 GCTCCCCCTAATATTTGATTCACG 59.544 45.833 0.00 0.00 0.00 4.35
2892 3000 4.394729 TCCCCCTAATATTTGATTCACGC 58.605 43.478 0.00 0.00 0.00 5.34
2893 3001 4.104102 TCCCCCTAATATTTGATTCACGCT 59.896 41.667 0.00 0.00 0.00 5.07
2894 3002 4.455877 CCCCCTAATATTTGATTCACGCTC 59.544 45.833 0.00 0.00 0.00 5.03
2895 3003 4.455877 CCCCTAATATTTGATTCACGCTCC 59.544 45.833 0.00 0.00 0.00 4.70
2896 3004 5.063204 CCCTAATATTTGATTCACGCTCCA 58.937 41.667 0.00 0.00 0.00 3.86
2897 3005 5.049405 CCCTAATATTTGATTCACGCTCCAC 60.049 44.000 0.00 0.00 0.00 4.02
2898 3006 4.900635 AATATTTGATTCACGCTCCACC 57.099 40.909 0.00 0.00 0.00 4.61
2899 3007 2.198827 ATTTGATTCACGCTCCACCA 57.801 45.000 0.00 0.00 0.00 4.17
2900 3008 1.234821 TTTGATTCACGCTCCACCAC 58.765 50.000 0.00 0.00 0.00 4.16
2901 3009 0.107643 TTGATTCACGCTCCACCACA 59.892 50.000 0.00 0.00 0.00 4.17
2902 3010 0.320683 TGATTCACGCTCCACCACAG 60.321 55.000 0.00 0.00 0.00 3.66
2903 3011 1.639298 GATTCACGCTCCACCACAGC 61.639 60.000 0.00 0.00 0.00 4.40
2904 3012 2.395988 ATTCACGCTCCACCACAGCA 62.396 55.000 0.00 0.00 36.61 4.41
2905 3013 3.349006 CACGCTCCACCACAGCAC 61.349 66.667 0.00 0.00 36.61 4.40
2906 3014 4.626081 ACGCTCCACCACAGCACC 62.626 66.667 0.00 0.00 36.61 5.01
2907 3015 4.320456 CGCTCCACCACAGCACCT 62.320 66.667 0.00 0.00 36.61 4.00
2908 3016 2.670934 GCTCCACCACAGCACCTG 60.671 66.667 0.00 0.00 36.82 4.00
2909 3017 2.670934 CTCCACCACAGCACCTGC 60.671 66.667 0.00 0.00 42.49 4.85
2910 3018 3.480679 CTCCACCACAGCACCTGCA 62.481 63.158 0.00 0.00 45.16 4.41
2911 3019 2.981909 CCACCACAGCACCTGCAG 60.982 66.667 6.78 6.78 45.16 4.41
2912 3020 3.667282 CACCACAGCACCTGCAGC 61.667 66.667 8.66 0.00 45.16 5.25
2913 3021 4.193893 ACCACAGCACCTGCAGCA 62.194 61.111 8.66 0.00 45.16 4.41
2914 3022 3.667282 CCACAGCACCTGCAGCAC 61.667 66.667 8.66 0.00 45.16 4.40
2915 3023 3.667282 CACAGCACCTGCAGCACC 61.667 66.667 8.66 0.00 45.16 5.01
2916 3024 4.962836 ACAGCACCTGCAGCACCC 62.963 66.667 8.66 0.00 45.16 4.61
2929 3037 3.669344 CACCCCGCACGCACAATT 61.669 61.111 0.00 0.00 0.00 2.32
2960 3068 2.196997 ATTTGCAGCCCCGTAGCTCA 62.197 55.000 0.00 0.00 42.61 4.26
2961 3069 2.196997 TTTGCAGCCCCGTAGCTCAT 62.197 55.000 0.00 0.00 42.61 2.90
3013 3123 3.217599 TGCTCTACTTTACAGCGACTG 57.782 47.619 5.47 5.47 35.81 3.51
3024 3134 3.075998 GCGACTGCGTGAGTGATG 58.924 61.111 0.00 0.00 40.36 3.07
3030 3140 3.291585 GACTGCGTGAGTGATGTTTTTG 58.708 45.455 0.00 0.00 33.83 2.44
3032 3142 3.242739 ACTGCGTGAGTGATGTTTTTGTC 60.243 43.478 0.00 0.00 31.75 3.18
3035 3145 3.607078 GCGTGAGTGATGTTTTTGTCTCC 60.607 47.826 0.00 0.00 0.00 3.71
3036 3146 3.559655 CGTGAGTGATGTTTTTGTCTCCA 59.440 43.478 0.00 0.00 0.00 3.86
3037 3147 4.319046 CGTGAGTGATGTTTTTGTCTCCAG 60.319 45.833 0.00 0.00 0.00 3.86
3038 3148 3.565482 TGAGTGATGTTTTTGTCTCCAGC 59.435 43.478 0.00 0.00 0.00 4.85
3039 3149 2.549754 AGTGATGTTTTTGTCTCCAGCG 59.450 45.455 0.00 0.00 0.00 5.18
3040 3150 2.290641 GTGATGTTTTTGTCTCCAGCGT 59.709 45.455 0.00 0.00 0.00 5.07
3041 3151 3.496884 GTGATGTTTTTGTCTCCAGCGTA 59.503 43.478 0.00 0.00 0.00 4.42
3044 3154 4.966965 TGTTTTTGTCTCCAGCGTAAAA 57.033 36.364 0.00 0.00 0.00 1.52
3076 3188 2.132740 TTTGCGTGTGAGGCAATTTC 57.867 45.000 4.68 0.00 46.48 2.17
3081 3193 0.893727 GTGTGAGGCAATTTCGGGGT 60.894 55.000 0.00 0.00 0.00 4.95
3088 3200 1.815817 GCAATTTCGGGGTGCCTGTT 61.816 55.000 0.00 0.00 31.94 3.16
3116 3228 9.123709 GAGATGCTCTAATTGTCTAATTACTCG 57.876 37.037 0.00 0.00 37.64 4.18
3235 3349 2.610479 CGTCCAGCTAGCTTTCAGTCAA 60.610 50.000 16.46 0.00 0.00 3.18
3243 3357 4.142534 GCTAGCTTTCAGTCAAATGCATGA 60.143 41.667 7.70 0.00 0.00 3.07
3249 3363 6.367969 GCTTTCAGTCAAATGCATGAATTTCT 59.632 34.615 8.83 1.78 32.13 2.52
3334 5549 1.923395 AATCCCTGAACCGGAGCCA 60.923 57.895 9.46 1.19 31.41 4.75
3338 5553 1.984570 CCTGAACCGGAGCCAGAGA 60.985 63.158 9.46 0.00 0.00 3.10
3339 5554 1.216710 CTGAACCGGAGCCAGAGAC 59.783 63.158 9.46 0.00 0.00 3.36
3341 5556 0.039180 TGAACCGGAGCCAGAGACTA 59.961 55.000 9.46 0.00 0.00 2.59
3365 5580 2.573869 CGATCCACACCGTGCTCT 59.426 61.111 0.00 0.00 31.34 4.09
3407 5622 0.372679 GCGTGCATCATCTGTGAGTG 59.627 55.000 0.00 0.00 37.87 3.51
3423 5638 2.681064 TGCGGCCCGGTACTTACT 60.681 61.111 4.77 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.922503 TCTGCCTGGCCGAGACAA 60.923 61.111 17.53 0.00 0.00 3.18
63 64 1.539388 CTACTTTGGTTGCGGCATTGA 59.461 47.619 2.28 0.00 0.00 2.57
81 82 1.899437 CGCAAAGGCCACCTCCTCTA 61.899 60.000 5.01 0.00 34.82 2.43
83 84 2.543067 ATCGCAAAGGCCACCTCCTC 62.543 60.000 5.01 0.00 34.82 3.71
95 96 0.390998 TCCACGCTCATGATCGCAAA 60.391 50.000 18.25 1.62 0.00 3.68
131 132 1.128188 AACCAGGCCCTCGTCTTCTT 61.128 55.000 0.00 0.00 0.00 2.52
278 280 5.990996 GCCTCCAAAATGAATGTTTTTCTCA 59.009 36.000 0.00 0.00 0.00 3.27
337 339 6.377146 GCCTCCAAAATAAATAGTTGTCCTCA 59.623 38.462 0.00 0.00 0.00 3.86
351 353 1.075374 ACACAGCCAGCCTCCAAAATA 59.925 47.619 0.00 0.00 0.00 1.40
485 490 1.265635 TCCGTTTGCCTCATTTTGTCG 59.734 47.619 0.00 0.00 0.00 4.35
514 519 4.927782 GTGGTCGTGTGCCCAGCA 62.928 66.667 0.00 0.00 35.60 4.41
534 541 2.125326 CCGGGCGTGTCCTGAGATA 61.125 63.158 0.00 0.00 44.37 1.98
582 589 3.663995 TGTCGTTTTGTCCGGATTCTA 57.336 42.857 7.81 0.00 0.00 2.10
602 610 1.626654 CCGCGCGACTTCAAACAGAT 61.627 55.000 34.63 0.00 0.00 2.90
643 651 1.080974 AACGAACAGTACGCCGAGG 60.081 57.895 0.00 0.00 0.00 4.63
646 654 0.935831 TGTCAACGAACAGTACGCCG 60.936 55.000 0.00 0.00 0.00 6.46
649 657 1.126113 GGCATGTCAACGAACAGTACG 59.874 52.381 0.00 0.00 31.50 3.67
658 666 2.476051 GCTCGTGGCATGTCAACG 59.524 61.111 0.00 8.78 41.35 4.10
680 688 4.779733 AGCTCCCGGATCCCGTGT 62.780 66.667 0.73 0.00 46.80 4.49
826 837 4.860907 TCAAAGTCGTCGGAGTAATTAAGC 59.139 41.667 0.00 0.00 0.00 3.09
838 850 1.792367 TGCTTGACATCAAAGTCGTCG 59.208 47.619 0.00 0.00 41.41 5.12
864 877 6.918892 ATAGAGGAACTAGATGATCGATCG 57.081 41.667 20.03 9.36 41.55 3.69
884 899 6.089551 CGTCAACGAGATGCCCTTATTTATAG 59.910 42.308 0.00 0.00 43.02 1.31
898 913 1.402984 GCTTCCTCACGTCAACGAGAT 60.403 52.381 9.88 0.00 43.02 2.75
901 916 1.006571 GGCTTCCTCACGTCAACGA 60.007 57.895 9.88 0.00 43.02 3.85
922 938 3.165606 GCACTAGCTGCAATGGAGT 57.834 52.632 3.24 0.00 46.29 3.85
938 957 4.082190 CAGAGTACTAGTGCTACTTTGGCA 60.082 45.833 13.91 0.00 37.36 4.92
939 958 4.425520 CAGAGTACTAGTGCTACTTTGGC 58.574 47.826 13.91 0.00 0.00 4.52
958 977 1.551019 ATGAGCTCAGTGCCTGCAGA 61.551 55.000 22.96 0.00 44.23 4.26
965 984 2.548875 CTACCTTGATGAGCTCAGTGC 58.451 52.381 22.96 14.02 43.29 4.40
966 985 2.168106 AGCTACCTTGATGAGCTCAGTG 59.832 50.000 22.96 11.18 42.97 3.66
967 986 2.465813 AGCTACCTTGATGAGCTCAGT 58.534 47.619 22.96 15.85 42.97 3.41
968 987 3.540314 AAGCTACCTTGATGAGCTCAG 57.460 47.619 22.96 10.43 45.74 3.35
969 988 3.181471 GCTAAGCTACCTTGATGAGCTCA 60.181 47.826 20.79 20.79 45.74 4.26
975 1003 5.244851 TGATCCTAGCTAAGCTACCTTGATG 59.755 44.000 0.00 0.00 40.44 3.07
987 1015 2.288213 CGACGCCATTGATCCTAGCTAA 60.288 50.000 0.00 0.00 0.00 3.09
1156 1184 0.460987 CAGGAGTCGGCATGGAAGTC 60.461 60.000 0.00 0.00 0.00 3.01
1254 1282 0.888619 AGTCGTGGAAGAAGATGCGA 59.111 50.000 0.00 0.00 0.00 5.10
1317 1345 8.816894 TCAGTTAGATAGATCACACTTTCCTTT 58.183 33.333 0.00 0.00 0.00 3.11
1318 1346 8.367660 TCAGTTAGATAGATCACACTTTCCTT 57.632 34.615 0.00 0.00 0.00 3.36
1319 1347 7.962995 TCAGTTAGATAGATCACACTTTCCT 57.037 36.000 0.00 0.00 0.00 3.36
1320 1348 7.655328 CCATCAGTTAGATAGATCACACTTTCC 59.345 40.741 0.00 0.00 34.43 3.13
1328 1393 7.365497 TCTTTGCCATCAGTTAGATAGATCA 57.635 36.000 0.00 0.00 34.43 2.92
1335 1400 4.574674 ACCATCTTTGCCATCAGTTAGA 57.425 40.909 0.00 0.00 0.00 2.10
1337 1402 5.593909 CCATTACCATCTTTGCCATCAGTTA 59.406 40.000 0.00 0.00 0.00 2.24
1338 1403 4.403432 CCATTACCATCTTTGCCATCAGTT 59.597 41.667 0.00 0.00 0.00 3.16
1340 1405 3.956199 ACCATTACCATCTTTGCCATCAG 59.044 43.478 0.00 0.00 0.00 2.90
1341 1406 3.979911 ACCATTACCATCTTTGCCATCA 58.020 40.909 0.00 0.00 0.00 3.07
1342 1407 5.133221 AGTACCATTACCATCTTTGCCATC 58.867 41.667 0.00 0.00 0.00 3.51
1343 1408 5.129368 AGTACCATTACCATCTTTGCCAT 57.871 39.130 0.00 0.00 0.00 4.40
1344 1409 4.523083 GAGTACCATTACCATCTTTGCCA 58.477 43.478 0.00 0.00 0.00 4.92
1345 1410 3.883489 GGAGTACCATTACCATCTTTGCC 59.117 47.826 0.00 0.00 35.97 4.52
1346 1411 3.883489 GGGAGTACCATTACCATCTTTGC 59.117 47.826 0.00 0.00 39.85 3.68
1349 1414 4.101119 CGAAGGGAGTACCATTACCATCTT 59.899 45.833 0.00 0.00 40.42 2.40
1350 1415 3.641906 CGAAGGGAGTACCATTACCATCT 59.358 47.826 0.00 0.00 40.42 2.90
1351 1416 3.387050 ACGAAGGGAGTACCATTACCATC 59.613 47.826 0.00 0.00 40.42 3.51
1352 1417 3.381335 ACGAAGGGAGTACCATTACCAT 58.619 45.455 0.00 0.00 40.42 3.55
1359 1424 0.251297 TTCGGACGAAGGGAGTACCA 60.251 55.000 2.62 0.00 43.89 3.25
1361 1426 2.229784 TCTTTTCGGACGAAGGGAGTAC 59.770 50.000 7.25 0.00 35.38 2.73
1363 1428 1.000618 GTCTTTTCGGACGAAGGGAGT 59.999 52.381 7.25 0.00 35.38 3.85
1364 1429 1.272769 AGTCTTTTCGGACGAAGGGAG 59.727 52.381 7.25 7.51 40.76 4.30
1365 1430 1.335145 AGTCTTTTCGGACGAAGGGA 58.665 50.000 7.25 7.18 40.76 4.20
1370 1435 1.269936 GGGACAAGTCTTTTCGGACGA 60.270 52.381 0.00 0.00 40.76 4.20
1389 1454 7.636150 ACATCCATTTAAGAGACAAGATTGG 57.364 36.000 0.00 0.00 0.00 3.16
1394 1459 9.202273 GCTAGATACATCCATTTAAGAGACAAG 57.798 37.037 0.00 0.00 0.00 3.16
1395 1460 8.704668 TGCTAGATACATCCATTTAAGAGACAA 58.295 33.333 0.00 0.00 0.00 3.18
1398 1463 8.484214 AGTGCTAGATACATCCATTTAAGAGA 57.516 34.615 0.00 0.00 0.00 3.10
1406 1471 8.476447 CATCAAGATAGTGCTAGATACATCCAT 58.524 37.037 0.00 0.00 0.00 3.41
1407 1472 7.578380 GCATCAAGATAGTGCTAGATACATCCA 60.578 40.741 0.00 0.00 36.02 3.41
1409 1474 7.546358 AGCATCAAGATAGTGCTAGATACATC 58.454 38.462 0.00 0.00 46.54 3.06
1410 1475 7.479352 AGCATCAAGATAGTGCTAGATACAT 57.521 36.000 0.00 0.00 46.54 2.29
1411 1476 6.907853 AGCATCAAGATAGTGCTAGATACA 57.092 37.500 0.00 0.00 46.54 2.29
1417 1482 8.586879 ATGTATCTAGCATCAAGATAGTGCTA 57.413 34.615 6.20 6.20 46.54 3.49
1419 1484 7.546358 AGATGTATCTAGCATCAAGATAGTGC 58.454 38.462 10.34 0.00 43.66 4.40
1427 1492 9.716531 CCTTCAAATAGATGTATCTAGCATCAA 57.283 33.333 10.34 0.00 43.66 2.57
1428 1493 8.874156 ACCTTCAAATAGATGTATCTAGCATCA 58.126 33.333 10.34 0.00 43.66 3.07
1429 1494 9.717942 AACCTTCAAATAGATGTATCTAGCATC 57.282 33.333 7.57 1.70 42.20 3.91
1445 1510 8.082242 CCGTCAGAAAAAGATTAACCTTCAAAT 58.918 33.333 0.00 0.00 0.00 2.32
1446 1511 7.283580 TCCGTCAGAAAAAGATTAACCTTCAAA 59.716 33.333 0.00 0.00 0.00 2.69
1447 1512 6.768861 TCCGTCAGAAAAAGATTAACCTTCAA 59.231 34.615 0.00 0.00 0.00 2.69
1448 1513 6.292923 TCCGTCAGAAAAAGATTAACCTTCA 58.707 36.000 0.00 0.00 0.00 3.02
1449 1514 6.649557 TCTCCGTCAGAAAAAGATTAACCTTC 59.350 38.462 0.00 0.00 0.00 3.46
1450 1515 6.531021 TCTCCGTCAGAAAAAGATTAACCTT 58.469 36.000 0.00 0.00 0.00 3.50
1451 1516 6.110411 TCTCCGTCAGAAAAAGATTAACCT 57.890 37.500 0.00 0.00 0.00 3.50
1452 1517 6.796705 TTCTCCGTCAGAAAAAGATTAACC 57.203 37.500 0.00 0.00 38.26 2.85
1464 1529 7.558807 TCTTACCATAATACTTTCTCCGTCAGA 59.441 37.037 0.00 0.00 0.00 3.27
1466 1531 7.649533 TCTTACCATAATACTTTCTCCGTCA 57.350 36.000 0.00 0.00 0.00 4.35
1475 1540 9.832445 ATTGTGACGAATCTTACCATAATACTT 57.168 29.630 0.00 0.00 0.00 2.24
1480 1545 8.554835 TTTCATTGTGACGAATCTTACCATAA 57.445 30.769 0.00 0.00 0.00 1.90
1484 1549 9.834628 TTATTTTTCATTGTGACGAATCTTACC 57.165 29.630 0.00 0.00 0.00 2.85
1529 1594 9.647797 CTAAAACAAAAACTTTAAGACCAAGGT 57.352 29.630 0.00 0.00 0.00 3.50
1530 1595 9.863845 TCTAAAACAAAAACTTTAAGACCAAGG 57.136 29.630 0.00 0.00 0.00 3.61
1585 1650 9.780413 GCTCCTAAAATTCTTGTCTTAGATTTG 57.220 33.333 0.00 0.00 0.00 2.32
1586 1651 8.669243 CGCTCCTAAAATTCTTGTCTTAGATTT 58.331 33.333 0.00 0.00 0.00 2.17
1587 1652 7.824779 ACGCTCCTAAAATTCTTGTCTTAGATT 59.175 33.333 0.00 0.00 0.00 2.40
1588 1653 7.331791 ACGCTCCTAAAATTCTTGTCTTAGAT 58.668 34.615 0.00 0.00 0.00 1.98
1589 1654 6.698380 ACGCTCCTAAAATTCTTGTCTTAGA 58.302 36.000 0.00 0.00 0.00 2.10
1590 1655 6.969828 ACGCTCCTAAAATTCTTGTCTTAG 57.030 37.500 0.00 0.00 0.00 2.18
1591 1656 8.836268 TTTACGCTCCTAAAATTCTTGTCTTA 57.164 30.769 0.00 0.00 0.00 2.10
1592 1657 7.739498 TTTACGCTCCTAAAATTCTTGTCTT 57.261 32.000 0.00 0.00 0.00 3.01
1593 1658 7.739498 TTTTACGCTCCTAAAATTCTTGTCT 57.261 32.000 0.00 0.00 0.00 3.41
1594 1659 8.021396 ACATTTTACGCTCCTAAAATTCTTGTC 58.979 33.333 0.20 0.00 35.16 3.18
1595 1660 7.882179 ACATTTTACGCTCCTAAAATTCTTGT 58.118 30.769 0.20 0.00 35.16 3.16
1596 1661 9.274065 GTACATTTTACGCTCCTAAAATTCTTG 57.726 33.333 0.20 0.00 35.16 3.02
1597 1662 8.173130 CGTACATTTTACGCTCCTAAAATTCTT 58.827 33.333 0.00 0.00 35.16 2.52
1598 1663 7.681903 CGTACATTTTACGCTCCTAAAATTCT 58.318 34.615 0.00 0.00 35.16 2.40
1599 1664 7.872211 CGTACATTTTACGCTCCTAAAATTC 57.128 36.000 0.00 0.00 35.16 2.17
1667 1753 4.202070 CCCTGTACAACCACGAAACAAATT 60.202 41.667 0.00 0.00 0.00 1.82
1697 1783 2.504244 GTCAGAAGGACCGACGCG 60.504 66.667 3.53 3.53 40.83 6.01
1721 1807 4.749310 AACTGGAGCTCGCTGCCG 62.749 66.667 7.83 4.21 44.23 5.69
1733 1819 2.436646 AGATTCGGCGGCAACTGG 60.437 61.111 10.53 0.00 0.00 4.00
1737 1823 2.813474 CGTCAGATTCGGCGGCAA 60.813 61.111 10.53 2.83 0.00 4.52
1781 1867 2.606213 TGGGCACGGATGGACTCA 60.606 61.111 0.00 0.00 0.00 3.41
1859 1945 2.464459 GGAGAAGGCAACGGCATCG 61.464 63.158 0.00 0.00 43.71 3.84
1868 1954 4.649705 TGACCCCCGGAGAAGGCA 62.650 66.667 0.73 0.00 0.00 4.75
1977 2063 1.583495 AAGACGTCGATGAGCGTGGA 61.583 55.000 12.58 0.00 41.70 4.02
1998 2084 0.108520 TTGTCGAGGTTGCGGGTATC 60.109 55.000 0.00 0.00 0.00 2.24
2000 2086 0.390603 CATTGTCGAGGTTGCGGGTA 60.391 55.000 0.00 0.00 0.00 3.69
2255 2341 3.499737 CATTCGGTGCGCCAGTCC 61.500 66.667 18.18 1.05 34.09 3.85
2288 2374 4.263572 CACCAGTGGTTCCCGGCA 62.264 66.667 13.62 0.00 31.02 5.69
2327 2413 1.198094 TCCCGAGCTTGGTCATGGAA 61.198 55.000 19.14 0.00 0.00 3.53
2572 2668 1.298667 GCGCCTTTTAGGAGTCCCA 59.701 57.895 5.25 0.00 37.67 4.37
2598 2706 8.926710 CCTATAAAAGAATTATAGCACACCGAG 58.073 37.037 8.91 0.00 34.97 4.63
2599 2707 7.876068 CCCTATAAAAGAATTATAGCACACCGA 59.124 37.037 8.91 0.00 34.97 4.69
2600 2708 7.360946 GCCCTATAAAAGAATTATAGCACACCG 60.361 40.741 8.91 0.00 34.97 4.94
2601 2709 7.094334 GGCCCTATAAAAGAATTATAGCACACC 60.094 40.741 8.91 4.90 34.97 4.16
2602 2710 7.447238 TGGCCCTATAAAAGAATTATAGCACAC 59.553 37.037 0.00 2.32 34.97 3.82
2603 2711 7.522542 TGGCCCTATAAAAGAATTATAGCACA 58.477 34.615 0.00 5.66 34.97 4.57
2604 2712 7.996098 TGGCCCTATAAAAGAATTATAGCAC 57.004 36.000 0.00 4.45 34.97 4.40
2605 2713 9.427821 TTTTGGCCCTATAAAAGAATTATAGCA 57.572 29.630 0.00 1.79 34.97 3.49
2621 2729 4.098807 GACAAAAAGACTGTTTTGGCCCTA 59.901 41.667 18.59 0.00 46.52 3.53
2634 2742 1.866925 CTCCCGCGGACAAAAAGAC 59.133 57.895 30.73 0.00 0.00 3.01
2635 2743 1.964373 GCTCCCGCGGACAAAAAGA 60.964 57.895 30.73 12.64 0.00 2.52
2660 2768 7.162385 CGTGTTTTTGTGCATTTTGAAAATCTC 59.838 33.333 0.00 0.00 0.00 2.75
2669 2777 1.325943 CGCCGTGTTTTTGTGCATTTT 59.674 42.857 0.00 0.00 0.00 1.82
2671 2779 0.179124 ACGCCGTGTTTTTGTGCATT 60.179 45.000 0.00 0.00 0.00 3.56
2685 2793 3.039202 GCTGTTGGATTGGACGCCG 62.039 63.158 0.00 0.00 0.00 6.46
2686 2794 1.648467 GAGCTGTTGGATTGGACGCC 61.648 60.000 0.00 0.00 0.00 5.68
2687 2795 1.648467 GGAGCTGTTGGATTGGACGC 61.648 60.000 0.00 0.00 0.00 5.19
2688 2796 0.321564 TGGAGCTGTTGGATTGGACG 60.322 55.000 0.00 0.00 0.00 4.79
2689 2797 1.168714 GTGGAGCTGTTGGATTGGAC 58.831 55.000 0.00 0.00 0.00 4.02
2690 2798 0.038166 GGTGGAGCTGTTGGATTGGA 59.962 55.000 0.00 0.00 0.00 3.53
2691 2799 0.038744 AGGTGGAGCTGTTGGATTGG 59.961 55.000 0.00 0.00 0.00 3.16
2692 2800 1.171308 CAGGTGGAGCTGTTGGATTG 58.829 55.000 0.00 0.00 0.00 2.67
2693 2801 0.610232 GCAGGTGGAGCTGTTGGATT 60.610 55.000 7.62 0.00 0.00 3.01
2694 2802 1.001641 GCAGGTGGAGCTGTTGGAT 60.002 57.895 7.62 0.00 0.00 3.41
2695 2803 2.431683 GCAGGTGGAGCTGTTGGA 59.568 61.111 7.62 0.00 0.00 3.53
2696 2804 2.113774 TGCAGGTGGAGCTGTTGG 59.886 61.111 7.62 0.00 0.00 3.77
2697 2805 1.512996 CTGTGCAGGTGGAGCTGTTG 61.513 60.000 7.62 0.00 0.00 3.33
2698 2806 1.228063 CTGTGCAGGTGGAGCTGTT 60.228 57.895 7.62 0.00 0.00 3.16
2699 2807 2.429058 CTGTGCAGGTGGAGCTGT 59.571 61.111 7.62 0.00 0.00 4.40
2700 2808 1.964891 CACTGTGCAGGTGGAGCTG 60.965 63.158 10.81 1.33 0.00 4.24
2701 2809 2.429058 CACTGTGCAGGTGGAGCT 59.571 61.111 10.81 0.00 0.00 4.09
2706 2814 4.624364 TCCGCCACTGTGCAGGTG 62.624 66.667 15.87 11.50 35.20 4.00
2707 2815 4.320456 CTCCGCCACTGTGCAGGT 62.320 66.667 15.87 0.00 0.00 4.00
2712 2820 3.716006 CAACGCTCCGCCACTGTG 61.716 66.667 0.00 0.00 0.00 3.66
2713 2821 3.750373 AACAACGCTCCGCCACTGT 62.750 57.895 0.00 0.00 0.00 3.55
2714 2822 2.972505 AACAACGCTCCGCCACTG 60.973 61.111 0.00 0.00 0.00 3.66
2715 2823 2.972505 CAACAACGCTCCGCCACT 60.973 61.111 0.00 0.00 0.00 4.00
2716 2824 4.025401 CCAACAACGCTCCGCCAC 62.025 66.667 0.00 0.00 0.00 5.01
2719 2827 1.022451 TATTCCCAACAACGCTCCGC 61.022 55.000 0.00 0.00 0.00 5.54
2720 2828 1.444836 TTATTCCCAACAACGCTCCG 58.555 50.000 0.00 0.00 0.00 4.63
2721 2829 4.421058 GAAATTATTCCCAACAACGCTCC 58.579 43.478 0.00 0.00 0.00 4.70
2722 2830 4.095610 CGAAATTATTCCCAACAACGCTC 58.904 43.478 0.00 0.00 31.52 5.03
2723 2831 3.119637 CCGAAATTATTCCCAACAACGCT 60.120 43.478 0.00 0.00 31.52 5.07
2724 2832 3.175929 CCGAAATTATTCCCAACAACGC 58.824 45.455 0.00 0.00 31.52 4.84
2725 2833 3.765026 CCCGAAATTATTCCCAACAACG 58.235 45.455 0.00 0.00 31.52 4.10
2726 2834 3.517602 GCCCGAAATTATTCCCAACAAC 58.482 45.455 0.00 0.00 31.52 3.32
2727 2835 2.498078 GGCCCGAAATTATTCCCAACAA 59.502 45.455 0.00 0.00 31.52 2.83
2728 2836 2.104170 GGCCCGAAATTATTCCCAACA 58.896 47.619 0.00 0.00 31.52 3.33
2729 2837 1.411246 GGGCCCGAAATTATTCCCAAC 59.589 52.381 5.69 0.00 34.01 3.77
2730 2838 1.783071 GGGCCCGAAATTATTCCCAA 58.217 50.000 5.69 0.00 34.01 4.12
2731 2839 0.466555 CGGGCCCGAAATTATTCCCA 60.467 55.000 41.82 0.00 42.83 4.37
2732 2840 1.176619 CCGGGCCCGAAATTATTCCC 61.177 60.000 45.44 0.27 42.83 3.97
2733 2841 1.176619 CCCGGGCCCGAAATTATTCC 61.177 60.000 45.44 0.52 42.83 3.01
2734 2842 1.802337 GCCCGGGCCCGAAATTATTC 61.802 60.000 45.44 19.12 42.83 1.75
2735 2843 1.830847 GCCCGGGCCCGAAATTATT 60.831 57.895 45.44 0.00 42.83 1.40
2736 2844 2.203437 GCCCGGGCCCGAAATTAT 60.203 61.111 45.44 0.00 42.83 1.28
2757 2865 7.398904 TATTTGGTAAATTTTCCTCCTGGAAGG 59.601 37.037 14.18 1.81 43.40 3.46
2758 2866 8.251026 GTATTTGGTAAATTTTCCTCCTGGAAG 58.749 37.037 14.18 0.00 41.26 3.46
2759 2867 7.730784 TGTATTTGGTAAATTTTCCTCCTGGAA 59.269 33.333 14.18 0.00 40.00 3.53
2760 2868 7.177744 GTGTATTTGGTAAATTTTCCTCCTGGA 59.822 37.037 14.18 0.00 34.95 3.86
2761 2869 7.178451 AGTGTATTTGGTAAATTTTCCTCCTGG 59.822 37.037 14.18 0.00 32.38 4.45
2762 2870 8.122472 AGTGTATTTGGTAAATTTTCCTCCTG 57.878 34.615 14.18 0.00 32.38 3.86
2763 2871 8.721133 AAGTGTATTTGGTAAATTTTCCTCCT 57.279 30.769 14.18 2.64 32.38 3.69
2764 2872 9.850628 GTAAGTGTATTTGGTAAATTTTCCTCC 57.149 33.333 14.18 5.26 32.38 4.30
2773 2881 9.953565 AGCAGATTAGTAAGTGTATTTGGTAAA 57.046 29.630 0.00 0.00 0.00 2.01
2794 2902 8.740906 CGGAGGATTAATAGAGTAATTAGCAGA 58.259 37.037 0.00 0.00 0.00 4.26
2795 2903 8.918961 CGGAGGATTAATAGAGTAATTAGCAG 57.081 38.462 0.00 0.00 0.00 4.24
2816 2924 0.039074 GGTGATCAGATACGCCGGAG 60.039 60.000 5.05 3.72 0.00 4.63
2817 2925 1.461091 GGGTGATCAGATACGCCGGA 61.461 60.000 5.05 0.00 37.53 5.14
2818 2926 1.006102 GGGTGATCAGATACGCCGG 60.006 63.158 0.00 0.00 37.53 6.13
2819 2927 1.200252 CTAGGGTGATCAGATACGCCG 59.800 57.143 0.00 0.00 37.53 6.46
2820 2928 1.067495 GCTAGGGTGATCAGATACGCC 60.067 57.143 0.00 0.00 36.13 5.68
2821 2929 1.067495 GGCTAGGGTGATCAGATACGC 60.067 57.143 0.00 0.00 0.00 4.42
2822 2930 2.520069 AGGCTAGGGTGATCAGATACG 58.480 52.381 0.00 0.00 0.00 3.06
2823 2931 4.965200 AAAGGCTAGGGTGATCAGATAC 57.035 45.455 0.00 0.00 0.00 2.24
2824 2932 5.975988 AAAAAGGCTAGGGTGATCAGATA 57.024 39.130 0.00 0.00 0.00 1.98
2825 2933 4.870021 AAAAAGGCTAGGGTGATCAGAT 57.130 40.909 0.00 0.00 0.00 2.90
2843 2951 7.812191 GCCAAATGAGTGTGTATGACATAAAAA 59.188 33.333 0.00 0.00 36.78 1.94
2844 2952 7.176515 AGCCAAATGAGTGTGTATGACATAAAA 59.823 33.333 0.00 0.00 36.78 1.52
2845 2953 6.658816 AGCCAAATGAGTGTGTATGACATAAA 59.341 34.615 0.00 0.00 36.78 1.40
2846 2954 6.179756 AGCCAAATGAGTGTGTATGACATAA 58.820 36.000 0.00 0.00 36.78 1.90
2847 2955 5.744171 AGCCAAATGAGTGTGTATGACATA 58.256 37.500 0.00 0.00 36.78 2.29
2848 2956 4.592942 AGCCAAATGAGTGTGTATGACAT 58.407 39.130 0.00 0.00 36.78 3.06
2849 2957 4.002982 GAGCCAAATGAGTGTGTATGACA 58.997 43.478 0.00 0.00 0.00 3.58
2850 2958 3.375299 GGAGCCAAATGAGTGTGTATGAC 59.625 47.826 0.00 0.00 0.00 3.06
2851 2959 3.609853 GGAGCCAAATGAGTGTGTATGA 58.390 45.455 0.00 0.00 0.00 2.15
2852 2960 2.684881 GGGAGCCAAATGAGTGTGTATG 59.315 50.000 0.00 0.00 0.00 2.39
2853 2961 2.357154 GGGGAGCCAAATGAGTGTGTAT 60.357 50.000 0.00 0.00 0.00 2.29
2854 2962 1.004277 GGGGAGCCAAATGAGTGTGTA 59.996 52.381 0.00 0.00 0.00 2.90
2855 2963 0.251341 GGGGAGCCAAATGAGTGTGT 60.251 55.000 0.00 0.00 0.00 3.72
2856 2964 0.967380 GGGGGAGCCAAATGAGTGTG 60.967 60.000 0.00 0.00 0.00 3.82
2857 2965 1.142688 AGGGGGAGCCAAATGAGTGT 61.143 55.000 0.00 0.00 0.00 3.55
2858 2966 0.918983 TAGGGGGAGCCAAATGAGTG 59.081 55.000 0.00 0.00 0.00 3.51
2859 2967 1.681229 TTAGGGGGAGCCAAATGAGT 58.319 50.000 0.00 0.00 0.00 3.41
2860 2968 4.664688 ATATTAGGGGGAGCCAAATGAG 57.335 45.455 0.00 0.00 0.00 2.90
2861 2969 5.103301 TCAAATATTAGGGGGAGCCAAATGA 60.103 40.000 0.00 0.00 0.00 2.57
2862 2970 5.147032 TCAAATATTAGGGGGAGCCAAATG 58.853 41.667 0.00 0.00 0.00 2.32
2863 2971 5.417170 TCAAATATTAGGGGGAGCCAAAT 57.583 39.130 0.00 0.00 0.00 2.32
2864 2972 4.890499 TCAAATATTAGGGGGAGCCAAA 57.110 40.909 0.00 0.00 0.00 3.28
2865 2973 5.103301 TGAATCAAATATTAGGGGGAGCCAA 60.103 40.000 0.00 0.00 0.00 4.52
2866 2974 4.418526 TGAATCAAATATTAGGGGGAGCCA 59.581 41.667 0.00 0.00 0.00 4.75
2867 2975 4.767409 GTGAATCAAATATTAGGGGGAGCC 59.233 45.833 0.00 0.00 0.00 4.70
2868 2976 4.455877 CGTGAATCAAATATTAGGGGGAGC 59.544 45.833 0.00 0.00 0.00 4.70
2869 2977 4.455877 GCGTGAATCAAATATTAGGGGGAG 59.544 45.833 0.00 0.00 0.00 4.30
2870 2978 4.104102 AGCGTGAATCAAATATTAGGGGGA 59.896 41.667 0.00 0.00 0.00 4.81
2871 2979 4.398319 AGCGTGAATCAAATATTAGGGGG 58.602 43.478 0.00 0.00 0.00 5.40
2872 2980 4.455877 GGAGCGTGAATCAAATATTAGGGG 59.544 45.833 0.00 0.00 0.00 4.79
2873 2981 5.049405 GTGGAGCGTGAATCAAATATTAGGG 60.049 44.000 0.00 0.00 0.00 3.53
2874 2982 5.049405 GGTGGAGCGTGAATCAAATATTAGG 60.049 44.000 0.00 0.00 0.00 2.69
2875 2983 5.527214 TGGTGGAGCGTGAATCAAATATTAG 59.473 40.000 0.00 0.00 0.00 1.73
2876 2984 5.295787 GTGGTGGAGCGTGAATCAAATATTA 59.704 40.000 0.00 0.00 0.00 0.98
2877 2985 4.096382 GTGGTGGAGCGTGAATCAAATATT 59.904 41.667 0.00 0.00 0.00 1.28
2878 2986 3.627577 GTGGTGGAGCGTGAATCAAATAT 59.372 43.478 0.00 0.00 0.00 1.28
2879 2987 3.006940 GTGGTGGAGCGTGAATCAAATA 58.993 45.455 0.00 0.00 0.00 1.40
2880 2988 1.812571 GTGGTGGAGCGTGAATCAAAT 59.187 47.619 0.00 0.00 0.00 2.32
2881 2989 1.234821 GTGGTGGAGCGTGAATCAAA 58.765 50.000 0.00 0.00 0.00 2.69
2882 2990 0.107643 TGTGGTGGAGCGTGAATCAA 59.892 50.000 0.00 0.00 0.00 2.57
2883 2991 0.320683 CTGTGGTGGAGCGTGAATCA 60.321 55.000 0.00 0.00 0.00 2.57
2884 2992 1.639298 GCTGTGGTGGAGCGTGAATC 61.639 60.000 0.00 0.00 0.00 2.52
2885 2993 1.672356 GCTGTGGTGGAGCGTGAAT 60.672 57.895 0.00 0.00 0.00 2.57
2886 2994 2.280797 GCTGTGGTGGAGCGTGAA 60.281 61.111 0.00 0.00 0.00 3.18
2887 2995 3.545574 TGCTGTGGTGGAGCGTGA 61.546 61.111 0.00 0.00 39.47 4.35
2888 2996 3.349006 GTGCTGTGGTGGAGCGTG 61.349 66.667 0.00 0.00 39.47 5.34
2889 2997 4.626081 GGTGCTGTGGTGGAGCGT 62.626 66.667 0.00 0.00 39.47 5.07
2890 2998 4.320456 AGGTGCTGTGGTGGAGCG 62.320 66.667 0.00 0.00 39.47 5.03
2891 2999 2.670934 CAGGTGCTGTGGTGGAGC 60.671 66.667 0.00 0.00 36.95 4.70
2892 3000 2.670934 GCAGGTGCTGTGGTGGAG 60.671 66.667 0.00 0.00 38.21 3.86
2893 3001 3.480679 CTGCAGGTGCTGTGGTGGA 62.481 63.158 5.57 0.00 42.66 4.02
2894 3002 2.981909 CTGCAGGTGCTGTGGTGG 60.982 66.667 5.57 0.00 42.66 4.61
2895 3003 3.667282 GCTGCAGGTGCTGTGGTG 61.667 66.667 17.12 0.00 42.66 4.17
2896 3004 4.193893 TGCTGCAGGTGCTGTGGT 62.194 61.111 17.12 0.00 42.66 4.16
2897 3005 3.667282 GTGCTGCAGGTGCTGTGG 61.667 66.667 17.12 0.00 42.66 4.17
2898 3006 3.667282 GGTGCTGCAGGTGCTGTG 61.667 66.667 17.12 0.00 42.66 3.66
2899 3007 4.962836 GGGTGCTGCAGGTGCTGT 62.963 66.667 17.12 0.00 42.66 4.40
2912 3020 3.609214 GAATTGTGCGTGCGGGGTG 62.609 63.158 0.00 0.00 0.00 4.61
2913 3021 3.361977 GAATTGTGCGTGCGGGGT 61.362 61.111 0.00 0.00 0.00 4.95
2914 3022 4.459331 CGAATTGTGCGTGCGGGG 62.459 66.667 0.00 0.00 0.00 5.73
2915 3023 4.459331 CCGAATTGTGCGTGCGGG 62.459 66.667 0.00 0.00 38.40 6.13
2922 3030 1.928706 TTTAGGGCGCCGAATTGTGC 61.929 55.000 22.54 3.21 40.99 4.57
2923 3031 0.738389 ATTTAGGGCGCCGAATTGTG 59.262 50.000 22.54 0.00 0.00 3.33
2924 3032 1.470051 AATTTAGGGCGCCGAATTGT 58.530 45.000 24.33 7.64 0.00 2.71
2925 3033 2.192624 CAAATTTAGGGCGCCGAATTG 58.807 47.619 25.14 17.77 29.55 2.32
2926 3034 1.470805 GCAAATTTAGGGCGCCGAATT 60.471 47.619 22.54 21.75 0.00 2.17
2927 3035 0.102300 GCAAATTTAGGGCGCCGAAT 59.898 50.000 22.54 17.17 0.00 3.34
2928 3036 1.244697 TGCAAATTTAGGGCGCCGAA 61.245 50.000 22.54 14.73 0.00 4.30
2929 3037 1.653094 CTGCAAATTTAGGGCGCCGA 61.653 55.000 22.54 8.19 0.00 5.54
2988 3096 2.537625 CGCTGTAAAGTAGAGCATGCTC 59.462 50.000 35.57 35.57 44.57 4.26
2989 3097 2.166459 TCGCTGTAAAGTAGAGCATGCT 59.834 45.455 22.92 22.92 44.57 3.79
2990 3098 2.282820 GTCGCTGTAAAGTAGAGCATGC 59.717 50.000 10.51 10.51 44.57 4.06
2991 3099 3.549471 CAGTCGCTGTAAAGTAGAGCATG 59.451 47.826 5.41 0.00 44.57 4.06
2992 3100 3.775202 CAGTCGCTGTAAAGTAGAGCAT 58.225 45.455 5.41 0.00 44.57 3.79
2993 3101 2.671351 GCAGTCGCTGTAAAGTAGAGCA 60.671 50.000 5.41 0.00 44.57 4.26
3013 3123 3.545633 GAGACAAAAACATCACTCACGC 58.454 45.455 0.00 0.00 0.00 5.34
3015 3125 4.555511 GCTGGAGACAAAAACATCACTCAC 60.556 45.833 0.00 0.00 42.06 3.51
3020 3130 2.571212 ACGCTGGAGACAAAAACATCA 58.429 42.857 0.00 0.00 42.06 3.07
3022 3132 5.508200 TTTTACGCTGGAGACAAAAACAT 57.492 34.783 0.00 0.00 42.06 2.71
3059 3171 1.573932 CGAAATTGCCTCACACGCA 59.426 52.632 0.00 0.00 0.00 5.24
3060 3172 1.154225 CCGAAATTGCCTCACACGC 60.154 57.895 0.00 0.00 0.00 5.34
3063 3175 0.893270 CACCCCGAAATTGCCTCACA 60.893 55.000 0.00 0.00 0.00 3.58
3072 3184 1.606313 CCAACAGGCACCCCGAAAT 60.606 57.895 0.00 0.00 35.76 2.17
3076 3188 2.971598 ATCTCCAACAGGCACCCCG 61.972 63.158 0.00 0.00 35.76 5.73
3126 3238 8.802267 AGTTGCATAACCACTATGTATGTTTTT 58.198 29.630 0.00 0.00 39.81 1.94
3136 3248 5.130975 TGGATCTGAGTTGCATAACCACTAT 59.869 40.000 0.00 0.00 37.52 2.12
3138 3250 3.264193 TGGATCTGAGTTGCATAACCACT 59.736 43.478 0.00 0.00 37.52 4.00
3249 3363 9.460019 AGGTTTTTCCAAATTTTTCTCATTTGA 57.540 25.926 6.90 0.00 42.10 2.69
3262 5477 8.028652 TCTACCAATTCAAGGTTTTTCCAAAT 57.971 30.769 0.00 0.00 40.54 2.32
3263 5478 7.418483 CCTCTACCAATTCAAGGTTTTTCCAAA 60.418 37.037 0.00 0.00 40.54 3.28
3264 5479 6.041523 CCTCTACCAATTCAAGGTTTTTCCAA 59.958 38.462 0.00 0.00 40.54 3.53
3282 5497 6.948589 AGGTTAAATTCAGACTTCCTCTACC 58.051 40.000 0.00 0.00 0.00 3.18
3334 5549 2.368311 GGATCGGGTCCTTAGTCTCT 57.632 55.000 0.00 0.00 44.16 3.10
3356 5571 2.701780 CGGTGAGCTAGAGCACGGT 61.702 63.158 4.01 0.00 45.16 4.83
3407 5622 2.024590 ATCAGTAAGTACCGGGCCGC 62.025 60.000 23.20 7.26 0.00 6.53
3416 5631 4.211125 CTGCTCCTCCTCATCAGTAAGTA 58.789 47.826 0.00 0.00 0.00 2.24
3423 5638 2.429767 CGGCTGCTCCTCCTCATCA 61.430 63.158 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.