Multiple sequence alignment - TraesCS2A01G572500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G572500 chr2A 100.000 3365 0 0 1 3365 768625209 768628573 0.000000e+00 6215.0
1 TraesCS2A01G572500 chr2A 97.436 39 1 0 1934 1972 700976380 700976418 2.170000e-07 67.6
2 TraesCS2A01G572500 chr6B 98.338 662 7 4 1 659 701870293 701870953 0.000000e+00 1158.0
3 TraesCS2A01G572500 chr2D 78.549 1282 201 45 1561 2805 643775135 643776379 0.000000e+00 776.0
4 TraesCS2A01G572500 chr2D 91.969 386 27 1 881 1262 643771195 643771580 3.820000e-149 538.0
5 TraesCS2A01G572500 chr2D 95.699 93 3 1 424 516 632796152 632796061 7.520000e-32 148.0
6 TraesCS2A01G572500 chr2D 90.323 93 7 2 758 848 643771022 643771114 1.640000e-23 121.0
7 TraesCS2A01G572500 chr2D 92.453 53 4 0 905 957 643788207 643788259 3.600000e-10 76.8
8 TraesCS2A01G572500 chr2D 90.566 53 5 0 905 957 643789785 643789837 1.680000e-08 71.3
9 TraesCS2A01G572500 chr2D 97.436 39 1 0 1934 1972 560992424 560992462 2.170000e-07 67.6
10 TraesCS2A01G572500 chr2B 78.186 1334 208 51 1523 2805 793349971 793348670 0.000000e+00 774.0
11 TraesCS2A01G572500 chr2B 85.179 587 54 19 729 1283 793350606 793350021 3.770000e-159 571.0
12 TraesCS2A01G572500 chr2B 93.069 101 5 2 428 527 75699378 75699279 2.710000e-31 147.0
13 TraesCS2A01G572500 chr2B 89.474 114 10 2 424 537 798707347 798707236 3.500000e-30 143.0
14 TraesCS2A01G572500 chr2B 97.436 39 1 0 1934 1972 669649395 669649433 2.170000e-07 67.6
15 TraesCS2A01G572500 chr2B 100.000 30 0 0 1943 1972 793329483 793329454 4.690000e-04 56.5
16 TraesCS2A01G572500 chr5A 95.188 478 22 1 2806 3282 635899323 635898846 0.000000e+00 754.0
17 TraesCS2A01G572500 chr5A 85.202 223 10 2 3143 3365 635898928 635898729 1.220000e-49 207.0
18 TraesCS2A01G572500 chr5A 96.512 86 3 0 3204 3289 635898981 635898896 3.500000e-30 143.0
19 TraesCS2A01G572500 chr5A 91.379 58 5 0 651 708 552746646 552746703 2.780000e-11 80.5
20 TraesCS2A01G572500 chr5A 97.778 45 0 1 540 584 571754097 571754054 3.600000e-10 76.8
21 TraesCS2A01G572500 chr5A 95.745 47 2 0 538 584 600290522 600290476 3.600000e-10 76.8
22 TraesCS2A01G572500 chr6A 89.247 372 30 7 1 363 606968777 606969147 1.100000e-124 457.0
23 TraesCS2A01G572500 chr6A 95.652 46 2 0 539 584 552711221 552711176 1.290000e-09 75.0
24 TraesCS2A01G572500 chr1A 86.994 346 34 8 2806 3149 1697718 1697382 2.450000e-101 379.0
25 TraesCS2A01G572500 chr1A 81.579 228 38 4 34 260 454494078 454493854 5.730000e-43 185.0
26 TraesCS2A01G572500 chr1A 97.826 46 1 0 539 584 432954305 432954260 2.780000e-11 80.5
27 TraesCS2A01G572500 chr1A 92.727 55 4 0 651 705 547903982 547904036 2.780000e-11 80.5
28 TraesCS2A01G572500 chr1A 97.778 45 0 1 540 584 576791204 576791247 3.600000e-10 76.8
29 TraesCS2A01G572500 chr1B 83.046 348 50 7 2807 3150 35031486 35031144 1.170000e-79 307.0
30 TraesCS2A01G572500 chr1B 83.333 222 33 4 41 261 107521276 107521058 5.690000e-48 202.0
31 TraesCS2A01G572500 chr1B 92.982 57 4 0 649 705 6560331 6560387 2.150000e-12 84.2
32 TraesCS2A01G572500 chr1B 92.727 55 4 0 651 705 470935531 470935585 2.780000e-11 80.5
33 TraesCS2A01G572500 chr1D 83.792 327 46 3 2806 3132 433923996 433924315 1.520000e-78 303.0
34 TraesCS2A01G572500 chr1D 82.533 229 36 4 32 260 35814361 35814585 7.360000e-47 198.0
35 TraesCS2A01G572500 chr1D 95.745 94 3 1 429 522 15052234 15052326 2.090000e-32 150.0
36 TraesCS2A01G572500 chr1D 83.333 162 27 0 2806 2967 418233182 418233021 2.090000e-32 150.0
37 TraesCS2A01G572500 chr1D 90.123 81 8 0 3277 3357 433924346 433924426 4.590000e-19 106.0
38 TraesCS2A01G572500 chr1D 84.932 73 7 4 637 708 65584754 65584685 1.680000e-08 71.3
39 TraesCS2A01G572500 chr7D 83.959 293 46 1 2807 3099 18776782 18777073 2.560000e-71 279.0
40 TraesCS2A01G572500 chr7D 79.730 222 39 6 32 252 34169390 34169174 4.500000e-34 156.0
41 TraesCS2A01G572500 chr7D 94.792 96 4 1 421 516 82851343 82851437 7.520000e-32 148.0
42 TraesCS2A01G572500 chr5B 79.661 295 58 2 2806 3099 606854985 606855278 9.460000e-51 211.0
43 TraesCS2A01G572500 chr5B 82.381 210 37 0 2804 3013 107949903 107949694 2.060000e-42 183.0
44 TraesCS2A01G572500 chr5B 81.517 211 37 2 2804 3013 108055360 108055151 4.460000e-39 172.0
45 TraesCS2A01G572500 chr5B 93.069 101 6 1 424 524 400546127 400546028 2.710000e-31 147.0
46 TraesCS2A01G572500 chr6D 85.714 196 26 2 1 195 460697033 460697227 4.400000e-49 206.0
47 TraesCS2A01G572500 chr6D 80.952 210 37 3 42 251 296822914 296822708 2.690000e-36 163.0
48 TraesCS2A01G572500 chr6D 96.739 92 2 1 424 515 373052052 373051962 5.820000e-33 152.0
49 TraesCS2A01G572500 chr7B 83.258 221 33 4 41 260 40391536 40391319 2.050000e-47 200.0
50 TraesCS2A01G572500 chr7B 82.883 222 34 4 41 261 12178024 12177806 2.650000e-46 196.0
51 TraesCS2A01G572500 chr7B 95.789 95 3 1 424 518 424573938 424573845 5.820000e-33 152.0
52 TraesCS2A01G572500 chr7B 93.750 96 5 1 421 516 613778950 613779044 3.500000e-30 143.0
53 TraesCS2A01G572500 chr7B 96.078 51 2 0 651 701 718533227 718533177 2.150000e-12 84.2
54 TraesCS2A01G572500 chr7B 96.078 51 2 0 651 701 718566021 718565971 2.150000e-12 84.2
55 TraesCS2A01G572500 chr7B 96.078 51 2 0 651 701 718590309 718590259 2.150000e-12 84.2
56 TraesCS2A01G572500 chr3D 81.776 214 36 3 32 245 56682491 56682701 3.450000e-40 176.0
57 TraesCS2A01G572500 chr3D 94.340 53 3 0 651 703 459077773 459077825 7.740000e-12 82.4
58 TraesCS2A01G572500 chr3D 92.453 53 4 0 1933 1985 177779276 177779328 3.600000e-10 76.8
59 TraesCS2A01G572500 chr7A 83.420 193 25 7 2803 2992 608392819 608393007 4.460000e-39 172.0
60 TraesCS2A01G572500 chr3A 90.265 113 10 1 403 514 362819066 362818954 2.710000e-31 147.0
61 TraesCS2A01G572500 chr3A 97.826 46 1 0 539 584 720217160 720217205 2.780000e-11 80.5
62 TraesCS2A01G572500 chr3A 92.453 53 4 0 1933 1985 218729688 218729740 3.600000e-10 76.8
63 TraesCS2A01G572500 chr4A 97.872 47 1 0 538 584 603455733 603455687 7.740000e-12 82.4
64 TraesCS2A01G572500 chr4A 94.444 36 2 0 1215 1250 570232833 570232798 4.690000e-04 56.5
65 TraesCS2A01G572500 chr5D 97.826 46 0 1 539 584 543295971 543296015 1.000000e-10 78.7
66 TraesCS2A01G572500 chr3B 92.453 53 4 0 1933 1985 256434856 256434908 3.600000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G572500 chr2A 768625209 768628573 3364 False 6215.000000 6215 100.000000 1 3365 1 chr2A.!!$F2 3364
1 TraesCS2A01G572500 chr6B 701870293 701870953 660 False 1158.000000 1158 98.338000 1 659 1 chr6B.!!$F1 658
2 TraesCS2A01G572500 chr2D 643771022 643776379 5357 False 478.333333 776 86.947000 758 2805 3 chr2D.!!$F2 2047
3 TraesCS2A01G572500 chr2B 793348670 793350606 1936 True 672.500000 774 81.682500 729 2805 2 chr2B.!!$R4 2076
4 TraesCS2A01G572500 chr5A 635898729 635899323 594 True 368.000000 754 92.300667 2806 3365 3 chr5A.!!$R3 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 915 0.317103 CCGACTAGGCGTTGATCGAG 60.317 60.0 18.49 0.0 42.86 4.04 F
1278 1346 0.034337 GTTTGTCCGTGCTCCTACCA 59.966 55.0 0.00 0.0 0.00 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2280 5799 0.032952 AGCAGTTTTCGCGGTACTCA 59.967 50.0 6.13 0.0 0.0 3.41 R
2569 6115 0.389025 GCAACTCCCAACAAACAGGG 59.611 55.0 0.00 0.0 46.9 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.346040 GCGTTTCATTTTCTTCTTTCATGTGG 60.346 38.462 0.00 0.00 0.00 4.17
322 323 3.015312 GCGGGCGAGTTTAGGGACT 62.015 63.158 0.00 0.00 46.37 3.85
340 341 1.761784 ACTGAGCATCCCATGTCTCTC 59.238 52.381 0.00 0.00 35.71 3.20
384 385 3.181477 GCCTTGTATATTTGTGCCATGCA 60.181 43.478 0.00 0.00 35.60 3.96
566 568 6.603237 TTTGAACATCAGTACAGACACAAG 57.397 37.500 0.00 0.00 0.00 3.16
567 569 4.058124 TGAACATCAGTACAGACACAAGC 58.942 43.478 0.00 0.00 0.00 4.01
568 570 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
569 571 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
570 572 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
571 573 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
572 574 0.387367 AGTACAGACACAAGCGCTCG 60.387 55.000 12.06 0.00 0.00 5.03
651 654 2.586258 AATCTGTTATCGCTCGCACT 57.414 45.000 0.00 0.00 0.00 4.40
652 655 2.126914 ATCTGTTATCGCTCGCACTC 57.873 50.000 0.00 0.00 0.00 3.51
653 656 1.095600 TCTGTTATCGCTCGCACTCT 58.904 50.000 0.00 0.00 0.00 3.24
654 657 1.195347 CTGTTATCGCTCGCACTCTG 58.805 55.000 0.00 0.00 0.00 3.35
655 658 0.808755 TGTTATCGCTCGCACTCTGA 59.191 50.000 0.00 0.00 0.00 3.27
656 659 1.405463 TGTTATCGCTCGCACTCTGAT 59.595 47.619 0.00 0.00 0.00 2.90
657 660 2.047769 GTTATCGCTCGCACTCTGATC 58.952 52.381 0.00 0.00 0.00 2.92
659 662 1.106351 ATCGCTCGCACTCTGATCCT 61.106 55.000 0.00 0.00 0.00 3.24
660 663 0.463833 TCGCTCGCACTCTGATCCTA 60.464 55.000 0.00 0.00 0.00 2.94
661 664 0.382158 CGCTCGCACTCTGATCCTAA 59.618 55.000 0.00 0.00 0.00 2.69
662 665 1.202302 CGCTCGCACTCTGATCCTAAA 60.202 52.381 0.00 0.00 0.00 1.85
663 666 2.544694 CGCTCGCACTCTGATCCTAAAT 60.545 50.000 0.00 0.00 0.00 1.40
664 667 3.304726 CGCTCGCACTCTGATCCTAAATA 60.305 47.826 0.00 0.00 0.00 1.40
665 668 4.617067 CGCTCGCACTCTGATCCTAAATAT 60.617 45.833 0.00 0.00 0.00 1.28
666 669 5.392057 CGCTCGCACTCTGATCCTAAATATA 60.392 44.000 0.00 0.00 0.00 0.86
667 670 6.390721 GCTCGCACTCTGATCCTAAATATAA 58.609 40.000 0.00 0.00 0.00 0.98
668 671 6.529829 GCTCGCACTCTGATCCTAAATATAAG 59.470 42.308 0.00 0.00 0.00 1.73
669 672 7.526142 TCGCACTCTGATCCTAAATATAAGT 57.474 36.000 0.00 0.00 0.00 2.24
670 673 7.594714 TCGCACTCTGATCCTAAATATAAGTC 58.405 38.462 0.00 0.00 0.00 3.01
671 674 7.448777 TCGCACTCTGATCCTAAATATAAGTCT 59.551 37.037 0.00 0.00 0.00 3.24
672 675 8.085296 CGCACTCTGATCCTAAATATAAGTCTT 58.915 37.037 0.00 0.00 0.00 3.01
673 676 9.771534 GCACTCTGATCCTAAATATAAGTCTTT 57.228 33.333 0.00 0.00 0.00 2.52
714 717 7.973048 AGACTACATACAGATAAAGGAACCA 57.027 36.000 0.00 0.00 0.00 3.67
715 718 8.012957 AGACTACATACAGATAAAGGAACCAG 57.987 38.462 0.00 0.00 0.00 4.00
716 719 7.620094 AGACTACATACAGATAAAGGAACCAGT 59.380 37.037 0.00 0.00 0.00 4.00
717 720 8.147244 ACTACATACAGATAAAGGAACCAGTT 57.853 34.615 0.00 0.00 0.00 3.16
718 721 8.041323 ACTACATACAGATAAAGGAACCAGTTG 58.959 37.037 0.00 0.00 0.00 3.16
719 722 6.779860 ACATACAGATAAAGGAACCAGTTGT 58.220 36.000 0.00 0.00 0.00 3.32
720 723 7.913789 ACATACAGATAAAGGAACCAGTTGTA 58.086 34.615 0.00 0.00 0.00 2.41
721 724 8.041323 ACATACAGATAAAGGAACCAGTTGTAG 58.959 37.037 0.00 0.00 0.00 2.74
722 725 6.435292 ACAGATAAAGGAACCAGTTGTAGT 57.565 37.500 0.00 0.00 0.00 2.73
723 726 6.231211 ACAGATAAAGGAACCAGTTGTAGTG 58.769 40.000 0.00 0.00 0.00 2.74
724 727 6.042781 ACAGATAAAGGAACCAGTTGTAGTGA 59.957 38.462 0.00 0.00 0.00 3.41
725 728 6.369065 CAGATAAAGGAACCAGTTGTAGTGAC 59.631 42.308 0.00 0.00 0.00 3.67
726 729 4.497291 AAAGGAACCAGTTGTAGTGACA 57.503 40.909 0.00 0.00 0.00 3.58
727 730 3.753294 AGGAACCAGTTGTAGTGACAG 57.247 47.619 0.00 0.00 36.76 3.51
733 736 1.056660 AGTTGTAGTGACAGGGGTGG 58.943 55.000 0.00 0.00 36.76 4.61
744 747 1.913762 AGGGGTGGAACAGAGACGG 60.914 63.158 0.00 0.00 41.80 4.79
754 757 1.188219 ACAGAGACGGTGCATCTGGT 61.188 55.000 16.49 0.00 43.81 4.00
779 783 1.571919 CGGGTAGTGCATAGAACTGC 58.428 55.000 0.00 0.00 42.62 4.40
817 821 6.567959 TGTAAGTGCAAACAATTGTCATCAA 58.432 32.000 12.39 0.00 38.85 2.57
823 827 5.069648 TGCAAACAATTGTCATCAACCCTTA 59.930 36.000 12.39 0.00 38.85 2.69
824 828 5.988561 GCAAACAATTGTCATCAACCCTTAA 59.011 36.000 12.39 0.00 38.85 1.85
825 829 6.650390 GCAAACAATTGTCATCAACCCTTAAT 59.350 34.615 12.39 0.00 38.85 1.40
826 830 7.360269 GCAAACAATTGTCATCAACCCTTAATG 60.360 37.037 12.39 0.00 38.85 1.90
827 831 6.916360 ACAATTGTCATCAACCCTTAATGT 57.084 33.333 4.92 0.00 36.33 2.71
828 832 8.415950 AACAATTGTCATCAACCCTTAATGTA 57.584 30.769 12.39 0.00 36.33 2.29
829 833 8.593945 ACAATTGTCATCAACCCTTAATGTAT 57.406 30.769 4.92 0.00 36.33 2.29
837 883 9.519191 TCATCAACCCTTAATGTATATTGGATG 57.481 33.333 0.00 0.00 0.00 3.51
862 908 0.683504 AGGATGTCCGACTAGGCGTT 60.684 55.000 18.49 0.00 42.08 4.84
864 910 0.454600 GATGTCCGACTAGGCGTTGA 59.545 55.000 18.49 4.86 40.77 3.18
867 913 0.591741 GTCCGACTAGGCGTTGATCG 60.592 60.000 18.49 3.35 40.77 3.69
869 915 0.317103 CCGACTAGGCGTTGATCGAG 60.317 60.000 18.49 0.00 42.86 4.04
874 920 2.496817 GGCGTTGATCGAGCCTCT 59.503 61.111 15.84 0.00 46.83 3.69
878 924 1.065701 GCGTTGATCGAGCCTCTTCTA 59.934 52.381 0.00 0.00 42.86 2.10
879 925 2.856720 GCGTTGATCGAGCCTCTTCTAG 60.857 54.545 0.00 0.00 42.86 2.43
882 936 2.302260 TGATCGAGCCTCTTCTAGTGG 58.698 52.381 0.00 0.00 32.23 4.00
892 946 0.827368 CTTCTAGTGGGTGAGGGAGC 59.173 60.000 0.00 0.00 0.00 4.70
906 960 2.430610 GGAGCGAGTGCCTCCATCT 61.431 63.158 2.70 0.00 44.31 2.90
972 1030 1.543802 CTCACTCACTCCCTCACTCAC 59.456 57.143 0.00 0.00 0.00 3.51
976 1034 2.645297 ACTCACTCCCTCACTCACTAGA 59.355 50.000 0.00 0.00 0.00 2.43
1122 1186 3.292936 AACGTCGGCGACCACTCT 61.293 61.111 31.86 10.85 42.00 3.24
1161 1225 1.065410 TCTGCCCCAACCTGGAGAAA 61.065 55.000 0.00 0.00 40.96 2.52
1169 1233 2.629617 CCAACCTGGAGAAAATTGTGCT 59.370 45.455 0.00 0.00 40.96 4.40
1239 1303 1.415659 CTCCTCCGCATCTTCTTCCAT 59.584 52.381 0.00 0.00 0.00 3.41
1264 1330 2.224018 TGCTTCCCTAACGTACGTTTGT 60.224 45.455 35.65 17.14 39.31 2.83
1273 1341 1.611592 CGTACGTTTGTCCGTGCTCC 61.612 60.000 7.22 0.00 41.92 4.70
1277 1345 1.012486 CGTTTGTCCGTGCTCCTACC 61.012 60.000 0.00 0.00 0.00 3.18
1278 1346 0.034337 GTTTGTCCGTGCTCCTACCA 59.966 55.000 0.00 0.00 0.00 3.25
1283 1351 1.122632 TCCGTGCTCCTACCAACCAA 61.123 55.000 0.00 0.00 0.00 3.67
1284 1352 0.953960 CCGTGCTCCTACCAACCAAC 60.954 60.000 0.00 0.00 0.00 3.77
1285 1353 0.250124 CGTGCTCCTACCAACCAACA 60.250 55.000 0.00 0.00 0.00 3.33
1286 1354 1.812324 CGTGCTCCTACCAACCAACAA 60.812 52.381 0.00 0.00 0.00 2.83
1287 1355 1.880027 GTGCTCCTACCAACCAACAAG 59.120 52.381 0.00 0.00 0.00 3.16
1288 1356 1.493022 TGCTCCTACCAACCAACAAGT 59.507 47.619 0.00 0.00 0.00 3.16
1289 1357 2.706723 TGCTCCTACCAACCAACAAGTA 59.293 45.455 0.00 0.00 0.00 2.24
1290 1358 3.072211 GCTCCTACCAACCAACAAGTAC 58.928 50.000 0.00 0.00 0.00 2.73
1292 1360 4.020839 GCTCCTACCAACCAACAAGTACTA 60.021 45.833 0.00 0.00 0.00 1.82
1293 1361 5.473066 TCCTACCAACCAACAAGTACTAC 57.527 43.478 0.00 0.00 0.00 2.73
1294 1362 4.900652 TCCTACCAACCAACAAGTACTACA 59.099 41.667 0.00 0.00 0.00 2.74
1295 1363 5.011329 TCCTACCAACCAACAAGTACTACAG 59.989 44.000 0.00 0.00 0.00 2.74
1296 1364 5.011329 CCTACCAACCAACAAGTACTACAGA 59.989 44.000 0.00 0.00 0.00 3.41
1297 1365 4.700700 ACCAACCAACAAGTACTACAGAC 58.299 43.478 0.00 0.00 0.00 3.51
1298 1366 4.162698 ACCAACCAACAAGTACTACAGACA 59.837 41.667 0.00 0.00 0.00 3.41
1299 1367 5.163237 ACCAACCAACAAGTACTACAGACAT 60.163 40.000 0.00 0.00 0.00 3.06
1300 1368 5.179368 CCAACCAACAAGTACTACAGACATG 59.821 44.000 0.00 0.00 0.00 3.21
1301 1369 5.546621 ACCAACAAGTACTACAGACATGT 57.453 39.130 0.00 0.00 43.76 3.21
1303 1371 6.453092 ACCAACAAGTACTACAGACATGTAC 58.547 40.000 0.00 0.00 41.01 2.90
1304 1372 6.041182 ACCAACAAGTACTACAGACATGTACA 59.959 38.462 0.00 0.00 41.01 2.90
1305 1373 7.097192 CCAACAAGTACTACAGACATGTACAT 58.903 38.462 1.41 1.41 41.01 2.29
1307 1375 9.803315 CAACAAGTACTACAGACATGTACATAT 57.197 33.333 8.32 0.00 41.01 1.78
1342 1410 4.363999 AGTACACTAGCTAGGTACGTACG 58.636 47.826 28.15 15.01 41.62 3.67
1343 1411 3.252974 ACACTAGCTAGGTACGTACGT 57.747 47.619 25.98 25.98 0.00 3.57
1344 1412 4.386867 ACACTAGCTAGGTACGTACGTA 57.613 45.455 23.60 23.60 0.00 3.57
1355 1423 2.693797 ACGTACGTACAGTGACCTTG 57.306 50.000 21.41 8.04 0.00 3.61
1356 1424 2.221169 ACGTACGTACAGTGACCTTGA 58.779 47.619 21.41 0.00 0.00 3.02
1357 1425 2.618241 ACGTACGTACAGTGACCTTGAA 59.382 45.455 21.41 0.00 0.00 2.69
1358 1426 3.066621 ACGTACGTACAGTGACCTTGAAA 59.933 43.478 21.41 0.00 0.00 2.69
1359 1427 3.667261 CGTACGTACAGTGACCTTGAAAG 59.333 47.826 24.50 0.18 0.00 2.62
1360 1428 4.555313 CGTACGTACAGTGACCTTGAAAGA 60.555 45.833 24.50 0.00 0.00 2.52
1361 1429 3.978687 ACGTACAGTGACCTTGAAAGAG 58.021 45.455 0.00 0.00 0.00 2.85
1362 1430 3.635373 ACGTACAGTGACCTTGAAAGAGA 59.365 43.478 0.00 0.00 0.00 3.10
1363 1431 4.230657 CGTACAGTGACCTTGAAAGAGAG 58.769 47.826 0.00 0.00 0.00 3.20
1364 1432 4.023107 CGTACAGTGACCTTGAAAGAGAGA 60.023 45.833 0.00 0.00 0.00 3.10
1365 1433 4.329462 ACAGTGACCTTGAAAGAGAGAC 57.671 45.455 0.00 0.00 0.00 3.36
1366 1434 3.964031 ACAGTGACCTTGAAAGAGAGACT 59.036 43.478 0.00 0.00 0.00 3.24
1367 1435 4.407296 ACAGTGACCTTGAAAGAGAGACTT 59.593 41.667 0.00 0.00 40.98 3.01
1368 1436 4.749099 CAGTGACCTTGAAAGAGAGACTTG 59.251 45.833 0.00 0.00 38.98 3.16
1369 1437 4.061596 GTGACCTTGAAAGAGAGACTTGG 58.938 47.826 0.00 0.00 38.98 3.61
1370 1438 3.711704 TGACCTTGAAAGAGAGACTTGGT 59.288 43.478 0.00 0.00 38.98 3.67
1371 1439 4.061596 GACCTTGAAAGAGAGACTTGGTG 58.938 47.826 0.00 0.00 38.98 4.17
1372 1440 3.456277 ACCTTGAAAGAGAGACTTGGTGT 59.544 43.478 0.00 0.00 38.98 4.16
1373 1441 4.061596 CCTTGAAAGAGAGACTTGGTGTC 58.938 47.826 0.00 0.00 45.67 3.67
1383 1451 3.166489 GACTTGGTGTCTAATCCTCCG 57.834 52.381 0.00 0.00 42.21 4.63
1384 1452 2.496470 GACTTGGTGTCTAATCCTCCGT 59.504 50.000 0.00 0.00 42.21 4.69
1385 1453 2.496470 ACTTGGTGTCTAATCCTCCGTC 59.504 50.000 0.00 0.00 0.00 4.79
1386 1454 1.481871 TGGTGTCTAATCCTCCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
1387 1455 0.751452 GGTGTCTAATCCTCCGTCCC 59.249 60.000 0.00 0.00 0.00 4.46
1388 1456 1.481871 GTGTCTAATCCTCCGTCCCA 58.518 55.000 0.00 0.00 0.00 4.37
1389 1457 2.040178 GTGTCTAATCCTCCGTCCCAT 58.960 52.381 0.00 0.00 0.00 4.00
1390 1458 3.228453 GTGTCTAATCCTCCGTCCCATA 58.772 50.000 0.00 0.00 0.00 2.74
1391 1459 3.640029 GTGTCTAATCCTCCGTCCCATAA 59.360 47.826 0.00 0.00 0.00 1.90
1392 1460 4.283722 GTGTCTAATCCTCCGTCCCATAAT 59.716 45.833 0.00 0.00 0.00 1.28
1393 1461 4.283467 TGTCTAATCCTCCGTCCCATAATG 59.717 45.833 0.00 0.00 0.00 1.90
1394 1462 4.283722 GTCTAATCCTCCGTCCCATAATGT 59.716 45.833 0.00 0.00 0.00 2.71
1395 1463 3.771577 AATCCTCCGTCCCATAATGTC 57.228 47.619 0.00 0.00 0.00 3.06
1396 1464 1.037493 TCCTCCGTCCCATAATGTCG 58.963 55.000 0.00 0.00 0.00 4.35
1397 1465 0.750850 CCTCCGTCCCATAATGTCGT 59.249 55.000 0.00 0.00 0.00 4.34
1398 1466 1.138266 CCTCCGTCCCATAATGTCGTT 59.862 52.381 0.00 0.00 0.00 3.85
1399 1467 2.419574 CCTCCGTCCCATAATGTCGTTT 60.420 50.000 0.00 0.00 0.00 3.60
1400 1468 3.267483 CTCCGTCCCATAATGTCGTTTT 58.733 45.455 0.00 0.00 0.00 2.43
1401 1469 3.677190 TCCGTCCCATAATGTCGTTTTT 58.323 40.909 0.00 0.00 0.00 1.94
1450 1518 9.871238 ATATTGATTACGACATTATAGTCACCC 57.129 33.333 0.00 0.00 38.43 4.61
1451 1519 5.765176 TGATTACGACATTATAGTCACCCG 58.235 41.667 0.00 0.00 38.43 5.28
1452 1520 2.503920 ACGACATTATAGTCACCCGC 57.496 50.000 0.00 0.00 38.43 6.13
1453 1521 1.752498 ACGACATTATAGTCACCCGCA 59.248 47.619 0.00 0.00 38.43 5.69
1454 1522 2.166870 ACGACATTATAGTCACCCGCAA 59.833 45.455 0.00 0.00 38.43 4.85
1455 1523 3.191669 CGACATTATAGTCACCCGCAAA 58.808 45.455 0.00 0.00 38.43 3.68
1456 1524 3.619483 CGACATTATAGTCACCCGCAAAA 59.381 43.478 0.00 0.00 38.43 2.44
1457 1525 4.093703 CGACATTATAGTCACCCGCAAAAA 59.906 41.667 0.00 0.00 38.43 1.94
1579 5092 3.450817 TGTATCTTGTGGATCCATCGTGT 59.549 43.478 19.62 7.39 35.98 4.49
1587 5100 0.753262 GATCCATCGTGTAGGGCTGT 59.247 55.000 0.00 0.00 0.00 4.40
1635 5148 2.115911 CCTCTACTCCAGCGAGCGT 61.116 63.158 0.00 0.00 40.03 5.07
1636 5149 1.063327 CTCTACTCCAGCGAGCGTG 59.937 63.158 0.00 0.00 40.03 5.34
1637 5150 2.580867 CTACTCCAGCGAGCGTGC 60.581 66.667 0.00 0.00 40.03 5.34
1638 5151 4.476410 TACTCCAGCGAGCGTGCG 62.476 66.667 0.00 0.00 40.03 5.34
1669 5182 1.069596 CAAAACCAAGGGCTGCACC 59.930 57.895 0.00 0.00 37.93 5.01
1731 5244 2.857448 GACGCGAAATGCACGGAA 59.143 55.556 15.93 0.00 46.97 4.30
1758 5271 2.816360 CGCCGACATCACCATGCTG 61.816 63.158 0.00 0.00 32.57 4.41
1778 5291 2.676121 CACCCGGCAAGCCATCAA 60.676 61.111 12.19 0.00 35.37 2.57
1780 5293 3.830192 CCCGGCAAGCCATCAAGC 61.830 66.667 12.19 0.00 35.37 4.01
1790 5303 2.124570 CATCAAGCTGTCCGGGGG 60.125 66.667 0.00 0.00 0.00 5.40
1809 5322 2.813179 GCCAGATTACGGCGTGCAG 61.813 63.158 24.86 8.67 40.35 4.41
1847 5360 3.781307 CGACCCCGCCAGGATTGA 61.781 66.667 0.00 0.00 41.02 2.57
1849 5362 3.699134 GACCCCGCCAGGATTGACC 62.699 68.421 0.00 0.00 41.02 4.02
1866 5379 0.765510 ACCAGGTCAACCAGTTCCTC 59.234 55.000 1.33 0.00 38.89 3.71
1872 5385 3.647771 AACCAGTTCCTCCCCGCC 61.648 66.667 0.00 0.00 0.00 6.13
1888 5401 2.045340 CCCCCGACGCCAAAATCT 60.045 61.111 0.00 0.00 0.00 2.40
1909 5422 2.233922 TGGAAACTCATCGAGGTCTTCC 59.766 50.000 15.67 15.67 37.45 3.46
1972 5485 2.741985 CGCACACCATCGGCAAGA 60.742 61.111 0.00 0.00 0.00 3.02
1976 5489 0.518636 CACACCATCGGCAAGACAAG 59.481 55.000 0.00 0.00 0.00 3.16
1983 5496 3.376918 GGCAAGACAAGCTGCCCC 61.377 66.667 1.50 0.00 41.28 5.80
1985 5498 2.202395 GCAAGACAAGCTGCCCCAA 61.202 57.895 0.00 0.00 0.00 4.12
1989 5502 1.973812 GACAAGCTGCCCCAACCTC 60.974 63.158 0.00 0.00 0.00 3.85
2028 5541 2.048127 GCCTGGTTCGTCGAAGCT 60.048 61.111 30.60 0.00 40.24 3.74
2035 5548 3.655486 TGGTTCGTCGAAGCTATCAAAA 58.345 40.909 30.60 11.78 40.24 2.44
2036 5549 4.250464 TGGTTCGTCGAAGCTATCAAAAT 58.750 39.130 30.60 0.00 40.24 1.82
2040 5553 5.450376 TCGTCGAAGCTATCAAAATGAAC 57.550 39.130 0.00 0.00 0.00 3.18
2047 5560 2.223572 GCTATCAAAATGAACTGCCCCG 60.224 50.000 0.00 0.00 0.00 5.73
2049 5562 1.079888 CAAAATGAACTGCCCCGGC 60.080 57.895 0.00 0.00 42.35 6.13
2053 5566 2.215451 AATGAACTGCCCCGGCTCAT 62.215 55.000 7.35 5.27 42.51 2.90
2094 5607 3.446570 GTCGACACCCCCGACGAT 61.447 66.667 11.55 0.00 45.23 3.73
2113 5626 4.022935 ACGATTTCGACCACAAGTACTACA 60.023 41.667 7.01 0.00 43.02 2.74
2114 5627 4.919168 CGATTTCGACCACAAGTACTACAA 59.081 41.667 0.00 0.00 43.02 2.41
2115 5628 5.060569 CGATTTCGACCACAAGTACTACAAG 59.939 44.000 0.00 0.00 43.02 3.16
2118 5631 4.863491 TCGACCACAAGTACTACAAGAAC 58.137 43.478 0.00 0.00 0.00 3.01
2119 5632 4.338964 TCGACCACAAGTACTACAAGAACA 59.661 41.667 0.00 0.00 0.00 3.18
2122 5635 5.227908 ACCACAAGTACTACAAGAACATCG 58.772 41.667 0.00 0.00 0.00 3.84
2124 5637 5.118664 CCACAAGTACTACAAGAACATCGTG 59.881 44.000 0.00 0.00 32.10 4.35
2126 5639 5.010314 ACAAGTACTACAAGAACATCGTGGA 59.990 40.000 0.00 0.00 30.01 4.02
2127 5640 5.056894 AGTACTACAAGAACATCGTGGAC 57.943 43.478 0.00 0.00 30.01 4.02
2130 5643 0.949105 ACAAGAACATCGTGGACGGC 60.949 55.000 0.00 0.00 40.29 5.68
2131 5644 0.948623 CAAGAACATCGTGGACGGCA 60.949 55.000 0.00 0.00 40.29 5.69
2132 5645 0.250124 AAGAACATCGTGGACGGCAA 60.250 50.000 0.00 0.00 40.29 4.52
2136 5649 4.096003 ATCGTGGACGGCAAGGGG 62.096 66.667 0.00 0.00 40.29 4.79
2164 5677 1.305297 ACCGACATGGAGCTCCTCA 60.305 57.895 32.28 15.01 42.00 3.86
2166 5679 0.460987 CCGACATGGAGCTCCTCAAC 60.461 60.000 32.28 19.33 42.00 3.18
2167 5680 0.803768 CGACATGGAGCTCCTCAACG 60.804 60.000 32.28 25.57 36.82 4.10
2171 5684 1.617947 ATGGAGCTCCTCAACGACCC 61.618 60.000 32.28 3.93 36.82 4.46
2172 5685 2.579738 GAGCTCCTCAACGACCCC 59.420 66.667 0.87 0.00 0.00 4.95
2173 5686 1.985116 GAGCTCCTCAACGACCCCT 60.985 63.158 0.87 0.00 0.00 4.79
2174 5687 1.536662 AGCTCCTCAACGACCCCTT 60.537 57.895 0.00 0.00 0.00 3.95
2175 5688 1.079057 GCTCCTCAACGACCCCTTC 60.079 63.158 0.00 0.00 0.00 3.46
2177 5690 0.905357 CTCCTCAACGACCCCTTCAT 59.095 55.000 0.00 0.00 0.00 2.57
2178 5691 0.902531 TCCTCAACGACCCCTTCATC 59.097 55.000 0.00 0.00 0.00 2.92
2180 5693 1.003118 CCTCAACGACCCCTTCATCAA 59.997 52.381 0.00 0.00 0.00 2.57
2182 5695 2.744202 CTCAACGACCCCTTCATCAAAG 59.256 50.000 0.00 0.00 34.52 2.77
2183 5696 2.370519 TCAACGACCCCTTCATCAAAGA 59.629 45.455 0.00 0.00 37.12 2.52
2187 5700 3.758554 ACGACCCCTTCATCAAAGATTTG 59.241 43.478 0.00 0.00 37.12 2.32
2191 5704 3.448660 CCCCTTCATCAAAGATTTGGTCC 59.551 47.826 5.52 0.00 38.66 4.46
2193 5706 4.082026 CCCTTCATCAAAGATTTGGTCCAC 60.082 45.833 5.52 0.00 38.66 4.02
2196 5709 5.710513 TCATCAAAGATTTGGTCCACAAG 57.289 39.130 5.52 0.00 40.82 3.16
2209 5722 1.369692 CACAAGTGGGCTACCGACA 59.630 57.895 0.00 0.00 40.75 4.35
2212 5725 0.320374 CAAGTGGGCTACCGACAAGA 59.680 55.000 0.00 0.00 40.75 3.02
2214 5727 0.320697 AGTGGGCTACCGACAAGAAC 59.679 55.000 0.00 0.00 40.75 3.01
2215 5728 0.320697 GTGGGCTACCGACAAGAACT 59.679 55.000 0.00 0.00 40.75 3.01
2217 5730 1.418637 TGGGCTACCGACAAGAACTTT 59.581 47.619 0.00 0.00 40.75 2.66
2218 5731 2.158726 TGGGCTACCGACAAGAACTTTT 60.159 45.455 0.00 0.00 40.75 2.27
2219 5732 2.882761 GGGCTACCGACAAGAACTTTTT 59.117 45.455 0.00 0.00 0.00 1.94
2220 5733 3.058432 GGGCTACCGACAAGAACTTTTTC 60.058 47.826 0.00 0.00 0.00 2.29
2234 5753 6.569228 GAACTTTTTCTTTTGGAAGTTCGG 57.431 37.500 10.80 0.00 44.34 4.30
2237 5756 1.956297 TTCTTTTGGAAGTTCGGCGA 58.044 45.000 4.99 4.99 34.41 5.54
2238 5757 1.956297 TCTTTTGGAAGTTCGGCGAA 58.044 45.000 19.83 19.83 34.41 4.70
2292 5811 0.038892 GACCAAGTGAGTACCGCGAA 60.039 55.000 8.23 0.00 0.00 4.70
2303 5822 1.262151 GTACCGCGAAAACTGCTTCAA 59.738 47.619 8.23 0.00 0.00 2.69
2306 5825 1.323136 CGCGAAAACTGCTTCAAGCG 61.323 55.000 0.00 2.20 46.26 4.68
2310 5829 1.518515 GAAAACTGCTTCAAGCGCAAC 59.481 47.619 11.47 0.00 46.26 4.17
2313 5832 0.533755 ACTGCTTCAAGCGCAACTCT 60.534 50.000 11.47 0.00 46.26 3.24
2314 5836 1.270305 ACTGCTTCAAGCGCAACTCTA 60.270 47.619 11.47 0.00 46.26 2.43
2320 5842 1.134699 TCAAGCGCAACTCTATGAGGG 60.135 52.381 11.47 0.00 33.35 4.30
2321 5843 1.134699 CAAGCGCAACTCTATGAGGGA 60.135 52.381 11.47 0.00 33.35 4.20
2322 5844 0.749649 AGCGCAACTCTATGAGGGAG 59.250 55.000 11.47 0.00 33.35 4.30
2323 5845 0.747255 GCGCAACTCTATGAGGGAGA 59.253 55.000 0.30 0.00 33.35 3.71
2324 5846 1.537135 GCGCAACTCTATGAGGGAGAC 60.537 57.143 0.30 0.00 33.35 3.36
2325 5847 1.751351 CGCAACTCTATGAGGGAGACA 59.249 52.381 0.00 0.00 33.35 3.41
2326 5848 2.223688 CGCAACTCTATGAGGGAGACAG 60.224 54.545 0.00 0.00 33.35 3.51
2327 5849 2.763448 GCAACTCTATGAGGGAGACAGT 59.237 50.000 0.00 0.00 33.35 3.55
2328 5850 3.181480 GCAACTCTATGAGGGAGACAGTC 60.181 52.174 0.00 0.00 33.35 3.51
2340 5862 1.668151 GACAGTCAACCTCACCGCC 60.668 63.158 0.00 0.00 0.00 6.13
2343 5865 2.432628 GTCAACCTCACCGCCGAG 60.433 66.667 0.00 0.00 0.00 4.63
2387 5913 4.782156 AGAGATCTATCCAATGGATCACCC 59.218 45.833 19.39 7.23 46.20 4.61
2391 5917 1.644437 ATCCAATGGATCACCCGCCA 61.644 55.000 9.36 0.00 38.09 5.69
2392 5918 1.152694 CCAATGGATCACCCGCCAT 60.153 57.895 0.00 0.00 46.49 4.40
2393 5919 1.174712 CCAATGGATCACCCGCCATC 61.175 60.000 0.00 0.00 43.85 3.51
2394 5920 0.466007 CAATGGATCACCCGCCATCA 60.466 55.000 0.00 0.00 43.85 3.07
2395 5921 0.466189 AATGGATCACCCGCCATCAC 60.466 55.000 0.00 0.00 43.85 3.06
2396 5922 2.203209 GGATCACCCGCCATCACC 60.203 66.667 0.00 0.00 0.00 4.02
2397 5923 2.589540 GATCACCCGCCATCACCA 59.410 61.111 0.00 0.00 0.00 4.17
2455 6001 7.806409 ATGTGCATGTAATAAGAGCAATACA 57.194 32.000 0.00 0.00 36.91 2.29
2460 6006 7.990314 TGCATGTAATAAGAGCAATACACCTAA 59.010 33.333 0.00 0.00 31.65 2.69
2472 6018 7.762382 AGCAATACACCTAACTTATCTTTTGC 58.238 34.615 0.00 0.00 35.91 3.68
2480 6026 8.514594 CACCTAACTTATCTTTTGCTTGATTGA 58.485 33.333 0.00 0.00 0.00 2.57
2485 6031 9.822185 AACTTATCTTTTGCTTGATTGAAGTTT 57.178 25.926 0.00 0.00 32.26 2.66
2488 6034 9.691362 TTATCTTTTGCTTGATTGAAGTTTACC 57.309 29.630 0.00 0.00 33.73 2.85
2489 6035 6.205784 TCTTTTGCTTGATTGAAGTTTACCG 58.794 36.000 0.00 0.00 33.73 4.02
2491 6037 6.621316 TTTGCTTGATTGAAGTTTACCGTA 57.379 33.333 0.00 0.00 33.73 4.02
2496 6042 7.148540 TGCTTGATTGAAGTTTACCGTATGTAC 60.149 37.037 0.00 0.00 33.73 2.90
2551 6097 2.803451 CCTTGCTGTATCGTCTCAGTC 58.197 52.381 0.00 0.00 34.57 3.51
2554 6100 1.745653 TGCTGTATCGTCTCAGTCCAG 59.254 52.381 0.00 0.00 34.57 3.86
2567 6113 2.012673 CAGTCCAGCAACTATTCCAGC 58.987 52.381 0.00 0.00 0.00 4.85
2568 6114 1.912043 AGTCCAGCAACTATTCCAGCT 59.088 47.619 0.00 0.00 37.95 4.24
2569 6115 2.093235 AGTCCAGCAACTATTCCAGCTC 60.093 50.000 0.00 0.00 34.61 4.09
2570 6116 1.210478 TCCAGCAACTATTCCAGCTCC 59.790 52.381 0.00 0.00 34.61 4.70
2573 6119 1.211457 AGCAACTATTCCAGCTCCCTG 59.789 52.381 0.00 0.00 38.85 4.45
2668 6217 9.912634 GTTTCTGTCATGAAAATTAATGGAGAA 57.087 29.630 0.00 0.00 37.63 2.87
2690 6239 9.387123 GAGAAGTAAGATTTTGTTTTGTAGCTG 57.613 33.333 0.00 0.00 0.00 4.24
2696 6245 7.472334 AGATTTTGTTTTGTAGCTGATGGAT 57.528 32.000 0.00 0.00 0.00 3.41
2697 6246 7.318141 AGATTTTGTTTTGTAGCTGATGGATG 58.682 34.615 0.00 0.00 0.00 3.51
2707 6256 7.418337 TGTAGCTGATGGATGAGTAAGTTAA 57.582 36.000 0.00 0.00 0.00 2.01
2712 6261 8.654997 AGCTGATGGATGAGTAAGTTAATATGT 58.345 33.333 0.00 0.00 0.00 2.29
2763 6321 3.266772 AGCCAATGAGAGACCCAAACATA 59.733 43.478 0.00 0.00 0.00 2.29
2794 6356 2.954318 AGAGCACTGCAAAGAATGTTGT 59.046 40.909 3.30 0.00 0.00 3.32
2814 6376 8.002984 TGTTGTGATATAGACCGAGTGAATTA 57.997 34.615 0.00 0.00 0.00 1.40
2815 6377 8.135529 TGTTGTGATATAGACCGAGTGAATTAG 58.864 37.037 0.00 0.00 0.00 1.73
2833 6395 9.573133 GTGAATTAGAGAAAACCACCATATTTG 57.427 33.333 0.00 0.00 0.00 2.32
2883 6445 7.218145 TCTACGAATTTCTATCGAAAAGCAC 57.782 36.000 2.65 0.00 42.03 4.40
2892 6454 5.037385 TCTATCGAAAAGCACTGATTCTCG 58.963 41.667 0.00 0.00 0.00 4.04
2906 6468 3.627577 TGATTCTCGGCCTAATCTTTTGC 59.372 43.478 17.90 0.00 34.00 3.68
2963 6525 4.142790 TCTCGATTATGACAGGTAGGTCC 58.857 47.826 0.00 0.00 36.97 4.46
3034 6596 8.706492 ACAAAATGTGATATGCAATTACCAAG 57.294 30.769 0.00 0.00 0.00 3.61
3042 6604 4.862641 ATGCAATTACCAAGTAGTCCCT 57.137 40.909 0.00 0.00 0.00 4.20
3047 6609 5.671493 CAATTACCAAGTAGTCCCTGGTAG 58.329 45.833 0.88 0.00 36.61 3.18
3058 6620 3.844211 AGTCCCTGGTAGTTTTGCATAGA 59.156 43.478 0.00 0.00 0.00 1.98
3122 6684 3.325753 GCTGCCTCACCCCACTCT 61.326 66.667 0.00 0.00 0.00 3.24
3181 6744 3.839432 GCGTCTAGGCCCGAGCTT 61.839 66.667 0.00 0.00 39.73 3.74
3315 6912 4.864334 CCCATCTCCGGCACTGGC 62.864 72.222 0.00 0.00 40.13 4.85
3349 6946 1.884926 GCTGGCTACGATGCAGTCC 60.885 63.158 0.00 0.00 34.04 3.85
3352 6949 2.962253 GCTACGATGCAGTCCGGC 60.962 66.667 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
322 323 1.761198 CAGAGAGACATGGGATGCTCA 59.239 52.381 0.00 0.00 36.53 4.26
384 385 4.230657 GCGAACGCAAGAGATGATACTAT 58.769 43.478 14.26 0.00 41.49 2.12
572 574 5.630896 TTTTCTATTCAGCGCGTGTATAC 57.369 39.130 8.43 0.00 0.00 1.47
610 613 9.162764 AGATTTTGGCCGTATATATACACATTC 57.837 33.333 20.24 12.69 32.87 2.67
688 691 9.656323 TGGTTCCTTTATCTGTATGTAGTCTAT 57.344 33.333 0.00 0.00 0.00 1.98
689 692 9.132923 CTGGTTCCTTTATCTGTATGTAGTCTA 57.867 37.037 0.00 0.00 0.00 2.59
690 693 7.620094 ACTGGTTCCTTTATCTGTATGTAGTCT 59.380 37.037 0.00 0.00 0.00 3.24
691 694 7.783042 ACTGGTTCCTTTATCTGTATGTAGTC 58.217 38.462 0.00 0.00 0.00 2.59
692 695 7.735326 ACTGGTTCCTTTATCTGTATGTAGT 57.265 36.000 0.00 0.00 0.00 2.73
693 696 8.041323 ACAACTGGTTCCTTTATCTGTATGTAG 58.959 37.037 0.00 0.00 0.00 2.74
694 697 7.913789 ACAACTGGTTCCTTTATCTGTATGTA 58.086 34.615 0.00 0.00 0.00 2.29
695 698 6.779860 ACAACTGGTTCCTTTATCTGTATGT 58.220 36.000 0.00 0.00 0.00 2.29
696 699 8.041323 ACTACAACTGGTTCCTTTATCTGTATG 58.959 37.037 0.00 0.00 0.00 2.39
697 700 8.041323 CACTACAACTGGTTCCTTTATCTGTAT 58.959 37.037 0.00 0.00 0.00 2.29
698 701 7.233962 TCACTACAACTGGTTCCTTTATCTGTA 59.766 37.037 0.00 0.00 0.00 2.74
699 702 6.042781 TCACTACAACTGGTTCCTTTATCTGT 59.957 38.462 0.00 0.00 0.00 3.41
700 703 6.369065 GTCACTACAACTGGTTCCTTTATCTG 59.631 42.308 0.00 0.00 0.00 2.90
701 704 6.042781 TGTCACTACAACTGGTTCCTTTATCT 59.957 38.462 0.00 0.00 30.91 1.98
702 705 6.228258 TGTCACTACAACTGGTTCCTTTATC 58.772 40.000 0.00 0.00 30.91 1.75
703 706 6.182507 TGTCACTACAACTGGTTCCTTTAT 57.817 37.500 0.00 0.00 30.91 1.40
704 707 5.454187 CCTGTCACTACAACTGGTTCCTTTA 60.454 44.000 0.00 0.00 34.49 1.85
705 708 4.451900 CTGTCACTACAACTGGTTCCTTT 58.548 43.478 0.00 0.00 34.49 3.11
706 709 3.181454 CCTGTCACTACAACTGGTTCCTT 60.181 47.826 0.00 0.00 34.49 3.36
707 710 2.368875 CCTGTCACTACAACTGGTTCCT 59.631 50.000 0.00 0.00 34.49 3.36
708 711 2.550208 CCCTGTCACTACAACTGGTTCC 60.550 54.545 0.00 0.00 34.49 3.62
709 712 2.550208 CCCCTGTCACTACAACTGGTTC 60.550 54.545 0.00 0.00 34.49 3.62
710 713 1.420138 CCCCTGTCACTACAACTGGTT 59.580 52.381 0.00 0.00 34.49 3.67
711 714 1.056660 CCCCTGTCACTACAACTGGT 58.943 55.000 0.00 0.00 34.49 4.00
712 715 1.056660 ACCCCTGTCACTACAACTGG 58.943 55.000 0.00 0.00 34.49 4.00
713 716 1.270839 CCACCCCTGTCACTACAACTG 60.271 57.143 0.00 0.00 34.49 3.16
714 717 1.056660 CCACCCCTGTCACTACAACT 58.943 55.000 0.00 0.00 34.49 3.16
715 718 1.053424 TCCACCCCTGTCACTACAAC 58.947 55.000 0.00 0.00 34.49 3.32
716 719 1.418637 GTTCCACCCCTGTCACTACAA 59.581 52.381 0.00 0.00 34.49 2.41
717 720 1.053424 GTTCCACCCCTGTCACTACA 58.947 55.000 0.00 0.00 0.00 2.74
718 721 1.002087 CTGTTCCACCCCTGTCACTAC 59.998 57.143 0.00 0.00 0.00 2.73
719 722 1.132977 TCTGTTCCACCCCTGTCACTA 60.133 52.381 0.00 0.00 0.00 2.74
720 723 0.399949 TCTGTTCCACCCCTGTCACT 60.400 55.000 0.00 0.00 0.00 3.41
721 724 0.035458 CTCTGTTCCACCCCTGTCAC 59.965 60.000 0.00 0.00 0.00 3.67
722 725 0.105194 TCTCTGTTCCACCCCTGTCA 60.105 55.000 0.00 0.00 0.00 3.58
723 726 0.321996 GTCTCTGTTCCACCCCTGTC 59.678 60.000 0.00 0.00 0.00 3.51
724 727 1.472662 CGTCTCTGTTCCACCCCTGT 61.473 60.000 0.00 0.00 0.00 4.00
725 728 1.293498 CGTCTCTGTTCCACCCCTG 59.707 63.158 0.00 0.00 0.00 4.45
726 729 1.913762 CCGTCTCTGTTCCACCCCT 60.914 63.158 0.00 0.00 0.00 4.79
727 730 2.214920 ACCGTCTCTGTTCCACCCC 61.215 63.158 0.00 0.00 0.00 4.95
733 736 1.354040 CAGATGCACCGTCTCTGTTC 58.646 55.000 6.16 0.00 33.34 3.18
744 747 1.503542 CCGCAAAGACCAGATGCAC 59.496 57.895 0.00 0.00 40.04 4.57
754 757 1.828595 TCTATGCACTACCCGCAAAGA 59.171 47.619 0.00 0.00 43.84 2.52
779 783 2.604914 CACTTACAACCTGCAGCTATCG 59.395 50.000 8.66 0.00 0.00 2.92
817 821 9.177927 TCTAACCATCCAATATACATTAAGGGT 57.822 33.333 0.00 0.00 29.28 4.34
823 827 8.894592 ACATCCTCTAACCATCCAATATACATT 58.105 33.333 0.00 0.00 0.00 2.71
824 828 8.454859 ACATCCTCTAACCATCCAATATACAT 57.545 34.615 0.00 0.00 0.00 2.29
825 829 7.038302 GGACATCCTCTAACCATCCAATATACA 60.038 40.741 0.00 0.00 0.00 2.29
826 830 7.331791 GGACATCCTCTAACCATCCAATATAC 58.668 42.308 0.00 0.00 0.00 1.47
827 831 6.154534 CGGACATCCTCTAACCATCCAATATA 59.845 42.308 0.00 0.00 0.00 0.86
828 832 5.046304 CGGACATCCTCTAACCATCCAATAT 60.046 44.000 0.00 0.00 0.00 1.28
829 833 4.283467 CGGACATCCTCTAACCATCCAATA 59.717 45.833 0.00 0.00 0.00 1.90
832 878 2.039418 CGGACATCCTCTAACCATCCA 58.961 52.381 0.00 0.00 0.00 3.41
837 883 2.885894 CCTAGTCGGACATCCTCTAACC 59.114 54.545 11.27 0.00 33.16 2.85
847 893 0.454600 GATCAACGCCTAGTCGGACA 59.545 55.000 11.27 0.00 33.16 4.02
862 908 2.302260 CCACTAGAAGAGGCTCGATCA 58.698 52.381 20.47 9.39 0.00 2.92
864 910 1.063567 ACCCACTAGAAGAGGCTCGAT 60.064 52.381 9.22 1.75 0.00 3.59
867 913 1.754226 CTCACCCACTAGAAGAGGCTC 59.246 57.143 6.34 6.34 0.00 4.70
869 915 0.827368 CCTCACCCACTAGAAGAGGC 59.173 60.000 0.00 0.00 39.39 4.70
871 917 2.383855 CTCCCTCACCCACTAGAAGAG 58.616 57.143 0.00 0.00 0.00 2.85
872 918 1.619977 GCTCCCTCACCCACTAGAAGA 60.620 57.143 0.00 0.00 0.00 2.87
874 920 0.970937 CGCTCCCTCACCCACTAGAA 60.971 60.000 0.00 0.00 0.00 2.10
878 924 2.681778 CTCGCTCCCTCACCCACT 60.682 66.667 0.00 0.00 0.00 4.00
879 925 2.997897 ACTCGCTCCCTCACCCAC 60.998 66.667 0.00 0.00 0.00 4.61
882 936 4.459089 GGCACTCGCTCCCTCACC 62.459 72.222 0.00 0.00 38.60 4.02
1050 1111 4.962836 GCAGCAGGGCACACCAGT 62.963 66.667 0.00 0.00 43.89 4.00
1082 1143 0.753111 GGTGGGCATGGAGATGAACC 60.753 60.000 0.00 0.00 0.00 3.62
1140 1204 0.846427 TCTCCAGGTTGGGGCAGAAT 60.846 55.000 0.00 0.00 38.12 2.40
1161 1225 1.238439 CCACCTTGTCGAGCACAATT 58.762 50.000 0.00 0.00 44.32 2.32
1169 1233 3.691342 CCTCCGCCACCTTGTCGA 61.691 66.667 0.00 0.00 0.00 4.20
1195 1259 4.077184 GACCACGCCGATGTCCCA 62.077 66.667 0.00 0.00 0.00 4.37
1239 1303 1.200716 CGTACGTTAGGGAAGCAGTCA 59.799 52.381 7.22 0.00 0.00 3.41
1264 1330 1.122632 TTGGTTGGTAGGAGCACGGA 61.123 55.000 0.00 0.00 0.00 4.69
1273 1341 5.924825 GTCTGTAGTACTTGTTGGTTGGTAG 59.075 44.000 0.00 0.00 0.00 3.18
1277 1345 5.758296 ACATGTCTGTAGTACTTGTTGGTTG 59.242 40.000 0.00 0.00 32.98 3.77
1278 1346 5.925509 ACATGTCTGTAGTACTTGTTGGTT 58.074 37.500 0.00 0.00 32.98 3.67
1309 1377 8.713036 ACCTAGCTAGTGTACTAGTAATAGTGT 58.287 37.037 19.31 13.57 45.85 3.55
1312 1380 9.352784 CGTACCTAGCTAGTGTACTAGTAATAG 57.647 40.741 29.65 18.16 45.85 1.73
1313 1381 8.861086 ACGTACCTAGCTAGTGTACTAGTAATA 58.139 37.037 29.65 9.47 45.85 0.98
1315 1383 7.113658 ACGTACCTAGCTAGTGTACTAGTAA 57.886 40.000 29.65 10.52 45.85 2.24
1316 1384 6.716934 ACGTACCTAGCTAGTGTACTAGTA 57.283 41.667 29.65 18.34 45.85 1.82
1317 1385 5.606348 ACGTACCTAGCTAGTGTACTAGT 57.394 43.478 29.65 23.52 45.85 2.57
1319 1387 5.067413 ACGTACGTACCTAGCTAGTGTACTA 59.933 44.000 29.65 22.77 34.17 1.82
1320 1388 4.142138 ACGTACGTACCTAGCTAGTGTACT 60.142 45.833 29.65 23.37 34.17 2.73
1322 1390 4.386867 ACGTACGTACCTAGCTAGTGTA 57.613 45.455 21.41 16.53 0.00 2.90
1323 1391 3.252974 ACGTACGTACCTAGCTAGTGT 57.747 47.619 21.41 17.45 0.00 3.55
1324 1392 4.700596 GTACGTACGTACCTAGCTAGTG 57.299 50.000 36.94 12.85 43.60 2.74
1335 1403 3.398406 TCAAGGTCACTGTACGTACGTA 58.602 45.455 23.60 23.60 0.00 3.57
1336 1404 2.221169 TCAAGGTCACTGTACGTACGT 58.779 47.619 25.98 25.98 0.00 3.57
1337 1405 2.975410 TCAAGGTCACTGTACGTACG 57.025 50.000 20.18 15.01 0.00 3.67
1338 1406 4.863491 TCTTTCAAGGTCACTGTACGTAC 58.137 43.478 18.90 18.90 0.00 3.67
1339 1407 4.823442 TCTCTTTCAAGGTCACTGTACGTA 59.177 41.667 0.00 0.00 0.00 3.57
1340 1408 3.635373 TCTCTTTCAAGGTCACTGTACGT 59.365 43.478 0.00 0.00 0.00 3.57
1341 1409 4.023107 TCTCTCTTTCAAGGTCACTGTACG 60.023 45.833 0.00 0.00 0.00 3.67
1342 1410 5.010213 AGTCTCTCTTTCAAGGTCACTGTAC 59.990 44.000 0.00 0.00 0.00 2.90
1343 1411 5.141182 AGTCTCTCTTTCAAGGTCACTGTA 58.859 41.667 0.00 0.00 0.00 2.74
1344 1412 3.964031 AGTCTCTCTTTCAAGGTCACTGT 59.036 43.478 0.00 0.00 0.00 3.55
1345 1413 4.599047 AGTCTCTCTTTCAAGGTCACTG 57.401 45.455 0.00 0.00 0.00 3.66
1346 1414 4.202305 CCAAGTCTCTCTTTCAAGGTCACT 60.202 45.833 0.00 0.00 33.63 3.41
1347 1415 4.061596 CCAAGTCTCTCTTTCAAGGTCAC 58.938 47.826 0.00 0.00 33.63 3.67
1348 1416 3.711704 ACCAAGTCTCTCTTTCAAGGTCA 59.288 43.478 0.00 0.00 33.63 4.02
1349 1417 4.061596 CACCAAGTCTCTCTTTCAAGGTC 58.938 47.826 0.00 0.00 33.63 3.85
1350 1418 3.456277 ACACCAAGTCTCTCTTTCAAGGT 59.544 43.478 0.00 0.00 33.63 3.50
1351 1419 4.061596 GACACCAAGTCTCTCTTTCAAGG 58.938 47.826 0.00 0.00 44.09 3.61
1364 1432 2.496470 GACGGAGGATTAGACACCAAGT 59.504 50.000 0.00 0.00 0.00 3.16
1365 1433 2.159085 GGACGGAGGATTAGACACCAAG 60.159 54.545 0.00 0.00 0.00 3.61
1366 1434 1.829222 GGACGGAGGATTAGACACCAA 59.171 52.381 0.00 0.00 0.00 3.67
1367 1435 1.481871 GGACGGAGGATTAGACACCA 58.518 55.000 0.00 0.00 0.00 4.17
1368 1436 0.751452 GGGACGGAGGATTAGACACC 59.249 60.000 0.00 0.00 0.00 4.16
1369 1437 1.481871 TGGGACGGAGGATTAGACAC 58.518 55.000 0.00 0.00 0.00 3.67
1370 1438 2.471815 ATGGGACGGAGGATTAGACA 57.528 50.000 0.00 0.00 0.00 3.41
1371 1439 4.283722 ACATTATGGGACGGAGGATTAGAC 59.716 45.833 0.00 0.00 0.00 2.59
1372 1440 4.489737 ACATTATGGGACGGAGGATTAGA 58.510 43.478 0.00 0.00 0.00 2.10
1373 1441 4.618460 CGACATTATGGGACGGAGGATTAG 60.618 50.000 0.00 0.00 0.00 1.73
1374 1442 3.257375 CGACATTATGGGACGGAGGATTA 59.743 47.826 0.00 0.00 0.00 1.75
1375 1443 2.037251 CGACATTATGGGACGGAGGATT 59.963 50.000 0.00 0.00 0.00 3.01
1376 1444 1.618837 CGACATTATGGGACGGAGGAT 59.381 52.381 0.00 0.00 0.00 3.24
1377 1445 1.037493 CGACATTATGGGACGGAGGA 58.963 55.000 0.00 0.00 0.00 3.71
1378 1446 0.750850 ACGACATTATGGGACGGAGG 59.249 55.000 11.46 0.00 0.00 4.30
1379 1447 2.596904 AACGACATTATGGGACGGAG 57.403 50.000 11.46 0.00 0.00 4.63
1380 1448 3.337694 AAAACGACATTATGGGACGGA 57.662 42.857 11.46 0.00 0.00 4.69
1424 1492 9.871238 GGGTGACTATAATGTCGTAATCAATAT 57.129 33.333 0.00 0.00 39.64 1.28
1425 1493 8.024865 CGGGTGACTATAATGTCGTAATCAATA 58.975 37.037 0.00 0.00 39.64 1.90
1426 1494 6.866770 CGGGTGACTATAATGTCGTAATCAAT 59.133 38.462 0.00 0.00 39.64 2.57
1427 1495 6.210796 CGGGTGACTATAATGTCGTAATCAA 58.789 40.000 0.00 0.00 39.64 2.57
1428 1496 5.765176 CGGGTGACTATAATGTCGTAATCA 58.235 41.667 0.00 0.00 39.64 2.57
1429 1497 4.620184 GCGGGTGACTATAATGTCGTAATC 59.380 45.833 0.00 0.00 39.64 1.75
1430 1498 4.038282 TGCGGGTGACTATAATGTCGTAAT 59.962 41.667 0.00 0.00 39.64 1.89
1431 1499 3.380954 TGCGGGTGACTATAATGTCGTAA 59.619 43.478 0.00 0.00 39.64 3.18
1432 1500 2.950975 TGCGGGTGACTATAATGTCGTA 59.049 45.455 0.00 0.00 39.64 3.43
1433 1501 1.752498 TGCGGGTGACTATAATGTCGT 59.248 47.619 0.00 0.00 39.64 4.34
1434 1502 2.502213 TGCGGGTGACTATAATGTCG 57.498 50.000 0.00 0.00 39.64 4.35
1435 1503 5.554822 TTTTTGCGGGTGACTATAATGTC 57.445 39.130 0.00 0.00 37.47 3.06
1502 1570 9.914834 AGGTAATAAATACTAGCACCAAAATCA 57.085 29.630 0.00 0.00 34.74 2.57
1508 1576 9.872684 AGTAGTAGGTAATAAATACTAGCACCA 57.127 33.333 0.00 0.00 33.77 4.17
1558 1626 4.060038 ACACGATGGATCCACAAGATAC 57.940 45.455 18.99 2.13 36.20 2.24
1559 1627 4.280929 CCTACACGATGGATCCACAAGATA 59.719 45.833 18.99 6.64 34.42 1.98
1568 5081 0.753262 ACAGCCCTACACGATGGATC 59.247 55.000 0.00 0.00 0.00 3.36
1579 5092 4.111016 CGACGCGTCACAGCCCTA 62.111 66.667 35.71 0.00 0.00 3.53
1644 5157 2.570284 CCCTTGGTTTTGGGGACGC 61.570 63.158 0.00 0.00 42.58 5.19
1646 5159 1.152333 AGCCCTTGGTTTTGGGGAC 60.152 57.895 0.97 0.00 43.53 4.46
1734 5247 2.202932 GTGATGTCGGCGCAGGAT 60.203 61.111 10.83 0.53 0.00 3.24
1737 5250 2.512286 ATGGTGATGTCGGCGCAG 60.512 61.111 10.83 5.07 0.00 5.18
1768 5281 1.651240 CCGGACAGCTTGATGGCTTG 61.651 60.000 0.00 0.00 41.00 4.01
1770 5283 2.270205 CCGGACAGCTTGATGGCT 59.730 61.111 0.00 0.00 44.10 4.75
1795 5308 2.860628 CGAGCTGCACGCCGTAATC 61.861 63.158 6.53 0.00 40.39 1.75
1796 5309 2.885644 CGAGCTGCACGCCGTAAT 60.886 61.111 6.53 0.00 40.39 1.89
1809 5322 4.821589 CTGTCCTTCCGGCCGAGC 62.822 72.222 30.73 10.05 0.00 5.03
1812 5325 4.473520 ATGCTGTCCTTCCGGCCG 62.474 66.667 21.04 21.04 0.00 6.13
1829 5342 3.781307 CAATCCTGGCGGGGTCGA 61.781 66.667 13.58 0.00 39.00 4.20
1830 5343 3.781307 TCAATCCTGGCGGGGTCG 61.781 66.667 13.58 0.00 39.81 4.79
1831 5344 2.124695 GTCAATCCTGGCGGGGTC 60.125 66.667 13.58 0.00 35.33 4.46
1832 5345 3.728373 GGTCAATCCTGGCGGGGT 61.728 66.667 13.58 0.77 35.33 4.95
1847 5360 0.765510 GAGGAACTGGTTGACCTGGT 59.234 55.000 0.00 0.00 41.55 4.00
1849 5362 0.036875 GGGAGGAACTGGTTGACCTG 59.963 60.000 5.61 5.61 41.55 4.00
1872 5385 2.406616 CCAGATTTTGGCGTCGGGG 61.407 63.158 0.00 0.00 40.87 5.73
1884 5397 3.772025 AGACCTCGATGAGTTTCCAGATT 59.228 43.478 0.00 0.00 0.00 2.40
1888 5401 2.233922 GGAAGACCTCGATGAGTTTCCA 59.766 50.000 13.27 0.00 35.16 3.53
1891 5404 3.165875 TCTGGAAGACCTCGATGAGTTT 58.834 45.455 0.00 0.00 38.67 2.66
1893 5406 2.374184 CTCTGGAAGACCTCGATGAGT 58.626 52.381 0.00 0.00 38.67 3.41
1900 5413 2.185608 GCGGCTCTGGAAGACCTC 59.814 66.667 0.00 0.00 38.67 3.85
1956 5469 1.514678 TTGTCTTGCCGATGGTGTGC 61.515 55.000 0.00 0.00 0.00 4.57
1972 5485 2.116125 GAGGTTGGGGCAGCTTGT 59.884 61.111 0.00 0.00 0.00 3.16
2023 5536 4.440663 GGGGCAGTTCATTTTGATAGCTTC 60.441 45.833 0.00 0.00 0.00 3.86
2025 5538 3.026694 GGGGCAGTTCATTTTGATAGCT 58.973 45.455 0.00 0.00 0.00 3.32
2028 5541 2.374184 CCGGGGCAGTTCATTTTGATA 58.626 47.619 0.00 0.00 0.00 2.15
2035 5548 2.683465 ATGAGCCGGGGCAGTTCAT 61.683 57.895 12.97 9.55 44.88 2.57
2036 5549 3.329889 ATGAGCCGGGGCAGTTCA 61.330 61.111 12.97 7.51 44.88 3.18
2047 5560 0.322816 TGCTTCTTGTCCCATGAGCC 60.323 55.000 0.00 0.00 0.00 4.70
2049 5562 1.004044 ACCTGCTTCTTGTCCCATGAG 59.996 52.381 0.00 0.00 0.00 2.90
2053 5566 1.228245 GCACCTGCTTCTTGTCCCA 60.228 57.895 0.00 0.00 38.21 4.37
2079 5592 1.808390 GAAATCGTCGGGGGTGTCG 60.808 63.158 0.00 0.00 0.00 4.35
2080 5593 1.808390 CGAAATCGTCGGGGGTGTC 60.808 63.158 0.00 0.00 46.45 3.67
2081 5594 2.263540 CGAAATCGTCGGGGGTGT 59.736 61.111 0.00 0.00 46.45 4.16
2093 5606 6.092955 TCTTGTAGTACTTGTGGTCGAAAT 57.907 37.500 0.00 0.00 0.00 2.17
2094 5607 5.518848 TCTTGTAGTACTTGTGGTCGAAA 57.481 39.130 0.00 0.00 0.00 3.46
2101 5614 5.118664 CCACGATGTTCTTGTAGTACTTGTG 59.881 44.000 0.00 0.09 0.00 3.33
2113 5626 0.250124 TTGCCGTCCACGATGTTCTT 60.250 50.000 0.00 0.00 43.02 2.52
2114 5627 0.670546 CTTGCCGTCCACGATGTTCT 60.671 55.000 0.00 0.00 43.02 3.01
2115 5628 1.635663 CCTTGCCGTCCACGATGTTC 61.636 60.000 0.00 0.00 43.02 3.18
2118 5631 2.819595 CCCTTGCCGTCCACGATG 60.820 66.667 0.00 0.00 43.02 3.84
2119 5632 4.096003 CCCCTTGCCGTCCACGAT 62.096 66.667 0.00 0.00 43.02 3.73
2164 5677 3.721087 ATCTTTGATGAAGGGGTCGTT 57.279 42.857 0.00 0.00 35.98 3.85
2166 5679 3.129287 CCAAATCTTTGATGAAGGGGTCG 59.871 47.826 4.25 0.00 40.55 4.79
2167 5680 4.089361 ACCAAATCTTTGATGAAGGGGTC 58.911 43.478 4.25 0.00 40.55 4.46
2171 5684 4.523943 TGTGGACCAAATCTTTGATGAAGG 59.476 41.667 0.00 0.00 40.55 3.46
2172 5685 5.710513 TGTGGACCAAATCTTTGATGAAG 57.289 39.130 0.00 0.00 40.55 3.02
2173 5686 5.598005 ACTTGTGGACCAAATCTTTGATGAA 59.402 36.000 0.00 0.00 40.55 2.57
2174 5687 5.009911 CACTTGTGGACCAAATCTTTGATGA 59.990 40.000 0.00 0.00 40.55 2.92
2175 5688 5.224888 CACTTGTGGACCAAATCTTTGATG 58.775 41.667 0.00 0.00 40.55 3.07
2177 5690 3.636300 CCACTTGTGGACCAAATCTTTGA 59.364 43.478 14.15 0.00 40.55 2.69
2178 5691 3.243839 CCCACTTGTGGACCAAATCTTTG 60.244 47.826 20.27 0.00 37.90 2.77
2180 5693 2.597455 CCCACTTGTGGACCAAATCTT 58.403 47.619 20.27 0.00 31.20 2.40
2182 5695 0.603065 GCCCACTTGTGGACCAAATC 59.397 55.000 20.27 0.00 31.20 2.17
2183 5696 0.188342 AGCCCACTTGTGGACCAAAT 59.812 50.000 20.27 0.00 31.20 2.32
2187 5700 1.002502 GGTAGCCCACTTGTGGACC 60.003 63.158 20.27 15.50 0.00 4.46
2191 5704 0.250124 TTGTCGGTAGCCCACTTGTG 60.250 55.000 0.00 0.00 0.00 3.33
2193 5706 0.320374 TCTTGTCGGTAGCCCACTTG 59.680 55.000 0.00 0.00 0.00 3.16
2196 5709 0.320697 AGTTCTTGTCGGTAGCCCAC 59.679 55.000 0.00 0.00 0.00 4.61
2212 5725 4.868171 GCCGAACTTCCAAAAGAAAAAGTT 59.132 37.500 0.00 0.00 42.86 2.66
2214 5727 3.485743 CGCCGAACTTCCAAAAGAAAAAG 59.514 43.478 0.00 0.00 36.30 2.27
2215 5728 3.128938 TCGCCGAACTTCCAAAAGAAAAA 59.871 39.130 0.00 0.00 36.30 1.94
2217 5730 2.290464 TCGCCGAACTTCCAAAAGAAA 58.710 42.857 0.00 0.00 36.30 2.52
2218 5731 1.956297 TCGCCGAACTTCCAAAAGAA 58.044 45.000 0.00 0.00 36.30 2.52
2219 5732 1.871039 CTTCGCCGAACTTCCAAAAGA 59.129 47.619 0.00 0.00 36.30 2.52
2220 5733 1.663161 GCTTCGCCGAACTTCCAAAAG 60.663 52.381 0.00 0.00 38.54 2.27
2222 5735 1.512156 GGCTTCGCCGAACTTCCAAA 61.512 55.000 0.00 0.00 39.62 3.28
2223 5736 1.964373 GGCTTCGCCGAACTTCCAA 60.964 57.895 0.00 0.00 39.62 3.53
2234 5753 0.526954 CATCTTTGCCATGGCTTCGC 60.527 55.000 35.53 11.15 42.51 4.70
2245 5764 2.719774 GCAAACGCGCCATCTTTGC 61.720 57.895 22.66 22.66 42.07 3.68
2246 5765 3.451250 GCAAACGCGCCATCTTTG 58.549 55.556 5.73 10.54 0.00 2.77
2270 5789 1.445582 CGGTACTCACTTGGTCCGC 60.446 63.158 0.00 0.00 0.00 5.54
2272 5791 1.445582 CGCGGTACTCACTTGGTCC 60.446 63.158 0.00 0.00 0.00 4.46
2273 5792 0.038892 TTCGCGGTACTCACTTGGTC 60.039 55.000 6.13 0.00 0.00 4.02
2275 5794 1.193874 GTTTTCGCGGTACTCACTTGG 59.806 52.381 6.13 0.00 0.00 3.61
2276 5795 2.096909 CAGTTTTCGCGGTACTCACTTG 60.097 50.000 6.13 0.00 0.00 3.16
2277 5796 2.132762 CAGTTTTCGCGGTACTCACTT 58.867 47.619 6.13 0.00 0.00 3.16
2278 5797 1.779569 CAGTTTTCGCGGTACTCACT 58.220 50.000 6.13 0.00 0.00 3.41
2280 5799 0.032952 AGCAGTTTTCGCGGTACTCA 59.967 50.000 6.13 0.00 0.00 3.41
2292 5811 0.740737 AGTTGCGCTTGAAGCAGTTT 59.259 45.000 18.22 0.00 46.01 2.66
2303 5822 0.749649 CTCCCTCATAGAGTTGCGCT 59.250 55.000 9.73 0.00 0.00 5.92
2306 5825 2.763448 ACTGTCTCCCTCATAGAGTTGC 59.237 50.000 0.00 0.00 32.93 4.17
2310 5829 3.383185 GGTTGACTGTCTCCCTCATAGAG 59.617 52.174 9.51 0.00 0.00 2.43
2313 5832 3.245622 TGAGGTTGACTGTCTCCCTCATA 60.246 47.826 29.05 17.08 45.05 2.15
2314 5836 2.183679 GAGGTTGACTGTCTCCCTCAT 58.816 52.381 27.01 9.95 41.12 2.90
2320 5842 0.667792 GCGGTGAGGTTGACTGTCTC 60.668 60.000 9.51 2.53 0.00 3.36
2321 5843 1.367840 GCGGTGAGGTTGACTGTCT 59.632 57.895 9.51 0.00 0.00 3.41
2322 5844 1.668151 GGCGGTGAGGTTGACTGTC 60.668 63.158 0.00 0.00 0.00 3.51
2323 5845 2.426023 GGCGGTGAGGTTGACTGT 59.574 61.111 0.00 0.00 0.00 3.55
2324 5846 2.738521 CGGCGGTGAGGTTGACTG 60.739 66.667 0.00 0.00 0.00 3.51
2325 5847 2.915659 TCGGCGGTGAGGTTGACT 60.916 61.111 7.21 0.00 0.00 3.41
2326 5848 2.432628 CTCGGCGGTGAGGTTGAC 60.433 66.667 7.21 0.00 32.18 3.18
2371 5893 0.400213 GGCGGGTGATCCATTGGATA 59.600 55.000 18.20 4.70 43.27 2.59
2372 5894 1.151450 GGCGGGTGATCCATTGGAT 59.849 57.895 18.23 18.23 46.28 3.41
2373 5895 1.644437 ATGGCGGGTGATCCATTGGA 61.644 55.000 8.08 8.08 39.95 3.53
2374 5896 1.152694 ATGGCGGGTGATCCATTGG 60.153 57.895 0.00 0.00 39.95 3.16
2375 5897 0.466007 TGATGGCGGGTGATCCATTG 60.466 55.000 0.00 0.00 42.74 2.82
2416 5962 4.987408 TGCACATATAATATGGCATGGC 57.013 40.909 13.29 13.29 0.00 4.40
2451 5997 9.686683 ATCAAGCAAAAGATAAGTTAGGTGTAT 57.313 29.630 0.00 0.00 0.00 2.29
2455 6001 8.635765 TCAATCAAGCAAAAGATAAGTTAGGT 57.364 30.769 0.00 0.00 0.00 3.08
2472 6018 7.388712 CGTACATACGGTAAACTTCAATCAAG 58.611 38.462 3.47 0.00 45.30 3.02
2489 6035 2.305009 AGACTAGGTGGGCGTACATAC 58.695 52.381 0.00 0.00 0.00 2.39
2491 6037 2.174210 TCTAGACTAGGTGGGCGTACAT 59.826 50.000 9.64 0.00 0.00 2.29
2496 6042 1.457009 GGCTCTAGACTAGGTGGGCG 61.457 65.000 9.64 0.00 0.00 6.13
2526 6072 2.588877 CGATACAGCAAGGCCCCG 60.589 66.667 0.00 0.00 0.00 5.73
2534 6080 1.745653 CTGGACTGAGACGATACAGCA 59.254 52.381 0.00 0.00 37.61 4.41
2535 6081 1.535015 GCTGGACTGAGACGATACAGC 60.535 57.143 0.00 0.00 42.27 4.40
2536 6082 1.745653 TGCTGGACTGAGACGATACAG 59.254 52.381 0.00 0.00 39.65 2.74
2551 6097 1.673168 GGAGCTGGAATAGTTGCTGG 58.327 55.000 0.00 0.00 35.76 4.85
2554 6100 1.065126 ACAGGGAGCTGGAATAGTTGC 60.065 52.381 0.00 0.00 0.00 4.17
2569 6115 0.389025 GCAACTCCCAACAAACAGGG 59.611 55.000 0.00 0.00 46.90 4.45
2570 6116 1.338020 GAGCAACTCCCAACAAACAGG 59.662 52.381 0.00 0.00 0.00 4.00
2573 6119 2.297701 TGAGAGCAACTCCCAACAAAC 58.702 47.619 8.13 0.00 44.34 2.93
2585 6134 9.897744 CAATTGTAAGATAAAACTTGAGAGCAA 57.102 29.630 0.00 0.00 0.00 3.91
2626 6175 9.896645 ATGACAGAAACAGATGTACAATCTAAT 57.103 29.630 0.00 0.00 0.00 1.73
2627 6176 9.154847 CATGACAGAAACAGATGTACAATCTAA 57.845 33.333 0.00 0.00 0.00 2.10
2629 6178 7.389232 TCATGACAGAAACAGATGTACAATCT 58.611 34.615 0.00 0.67 0.00 2.40
2630 6179 7.601073 TCATGACAGAAACAGATGTACAATC 57.399 36.000 0.00 0.00 0.00 2.67
2631 6180 7.984422 TTCATGACAGAAACAGATGTACAAT 57.016 32.000 0.00 0.00 0.00 2.71
2632 6181 7.800155 TTTCATGACAGAAACAGATGTACAA 57.200 32.000 0.00 0.00 32.88 2.41
2633 6182 7.800155 TTTTCATGACAGAAACAGATGTACA 57.200 32.000 0.00 0.00 37.24 2.90
2638 6187 9.865321 CCATTAATTTTCATGACAGAAACAGAT 57.135 29.630 0.00 0.00 37.24 2.90
2639 6188 9.076781 TCCATTAATTTTCATGACAGAAACAGA 57.923 29.630 0.00 0.00 37.24 3.41
2668 6217 8.299570 CCATCAGCTACAAAACAAAATCTTACT 58.700 33.333 0.00 0.00 0.00 2.24
2677 6226 5.316167 ACTCATCCATCAGCTACAAAACAA 58.684 37.500 0.00 0.00 0.00 2.83
2733 6291 4.949856 GGGTCTCTCATTGGCTTTGATTAA 59.050 41.667 0.00 0.00 0.00 1.40
2743 6301 5.439721 TCATATGTTTGGGTCTCTCATTGG 58.560 41.667 1.90 0.00 0.00 3.16
2763 6321 5.474532 TCTTTGCAGTGCTCTAAAACATCAT 59.525 36.000 17.60 0.00 0.00 2.45
2780 6338 6.037062 CGGTCTATATCACAACATTCTTTGCA 59.963 38.462 0.00 0.00 0.00 4.08
2794 6356 8.919777 TTCTCTAATTCACTCGGTCTATATCA 57.080 34.615 0.00 0.00 0.00 2.15
2814 6376 3.119495 GCGCAAATATGGTGGTTTTCTCT 60.119 43.478 0.30 0.00 0.00 3.10
2815 6377 3.119495 AGCGCAAATATGGTGGTTTTCTC 60.119 43.478 11.47 0.00 0.00 2.87
2833 6395 2.051423 GTTTTCTGCAAACCTAAGCGC 58.949 47.619 0.00 0.00 39.22 5.92
2883 6445 4.260948 GCAAAAGATTAGGCCGAGAATCAG 60.261 45.833 22.35 13.62 35.00 2.90
2913 6475 7.678947 AAATGTCCAAAGAGACTGATTAGTG 57.321 36.000 0.00 0.00 37.25 2.74
2921 6483 7.386851 TCGAGATTAAAATGTCCAAAGAGACT 58.613 34.615 0.00 0.00 37.66 3.24
2930 6492 8.499162 CCTGTCATAATCGAGATTAAAATGTCC 58.501 37.037 9.29 2.76 36.90 4.02
2963 6525 2.038659 ACACCCCATCAGTTTTTGTGG 58.961 47.619 0.00 0.00 0.00 4.17
3034 6596 3.412237 TGCAAAACTACCAGGGACTAC 57.588 47.619 0.00 0.00 36.02 2.73
3042 6604 3.329520 AGGGTGTCTATGCAAAACTACCA 59.670 43.478 12.80 0.00 0.00 3.25
3047 6609 8.736244 TCTAATTAAAGGGTGTCTATGCAAAAC 58.264 33.333 0.00 0.00 0.00 2.43
3058 6620 8.107729 CCTTTTCCTACTCTAATTAAAGGGTGT 58.892 37.037 0.00 0.00 37.54 4.16
3181 6744 4.373116 GCGACAACCTCGAGCCCA 62.373 66.667 6.99 0.00 46.14 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.