Multiple sequence alignment - TraesCS2A01G572200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G572200 chr2A 100.000 6351 0 0 1 6351 768570258 768576608 0.000000e+00 11729.0
1 TraesCS2A01G572200 chr2A 85.210 737 104 4 4629 5365 768620106 768620837 0.000000e+00 752.0
2 TraesCS2A01G572200 chr2A 73.247 1312 312 30 4037 5331 768545165 768546454 5.840000e-120 442.0
3 TraesCS2A01G572200 chr2A 82.469 405 43 13 897 1280 768602186 768602583 4.750000e-86 329.0
4 TraesCS2A01G572200 chr2A 87.168 226 27 2 1246 1470 765056183 765055959 8.170000e-64 255.0
5 TraesCS2A01G572200 chr2A 77.887 407 81 7 4061 4461 768556848 768557251 1.770000e-60 244.0
6 TraesCS2A01G572200 chr2A 87.222 180 9 3 603 770 609646314 609646491 6.500000e-45 193.0
7 TraesCS2A01G572200 chr2A 92.308 130 8 2 607 736 589780219 589780346 3.910000e-42 183.0
8 TraesCS2A01G572200 chr2A 81.498 227 25 9 1612 1833 768602931 768603145 3.040000e-38 171.0
9 TraesCS2A01G572200 chr2A 82.877 146 16 3 1003 1148 768469531 768469395 8.650000e-24 122.0
10 TraesCS2A01G572200 chr2A 100.000 33 0 0 17 49 707012607 707012639 1.910000e-05 62.1
11 TraesCS2A01G572200 chr2D 95.138 2571 110 13 2928 5488 643742992 643745557 0.000000e+00 4041.0
12 TraesCS2A01G572200 chr2D 85.108 1437 209 5 3932 5365 643768260 643769694 0.000000e+00 1463.0
13 TraesCS2A01G572200 chr2D 96.690 846 25 2 888 1730 643737385 643738230 0.000000e+00 1404.0
14 TraesCS2A01G572200 chr2D 91.535 697 48 4 2234 2930 643738772 643739457 0.000000e+00 950.0
15 TraesCS2A01G572200 chr2D 86.542 535 53 9 948 1470 643761693 643762220 7.140000e-159 571.0
16 TraesCS2A01G572200 chr2D 90.585 393 33 4 5480 5872 107106355 107105967 9.440000e-143 518.0
17 TraesCS2A01G572200 chr2D 73.585 1219 271 38 4131 5331 643719694 643720879 2.740000e-113 420.0
18 TraesCS2A01G572200 chr2D 88.559 236 20 5 1243 1473 643662188 643661955 4.850000e-71 279.0
19 TraesCS2A01G572200 chr2D 78.170 481 71 23 1004 1476 643674773 643675227 6.270000e-70 276.0
20 TraesCS2A01G572200 chr2D 87.225 227 27 2 1245 1470 639680205 639679980 2.270000e-64 257.0
21 TraesCS2A01G572200 chr2D 94.444 144 8 0 1936 2079 643738456 643738599 8.290000e-54 222.0
22 TraesCS2A01G572200 chr2D 81.781 247 24 10 1585 1827 643762361 643762590 3.020000e-43 187.0
23 TraesCS2A01G572200 chr2D 96.970 66 2 0 1729 1794 643738357 643738422 1.870000e-20 111.0
24 TraesCS2A01G572200 chr2D 100.000 46 0 0 2189 2234 643738622 643738667 1.130000e-12 86.1
25 TraesCS2A01G572200 chr2D 100.000 38 0 0 2099 2136 643738601 643738638 3.180000e-08 71.3
26 TraesCS2A01G572200 chr2D 95.349 43 2 0 5975 6017 71960545 71960587 1.140000e-07 69.4
27 TraesCS2A01G572200 chr2B 91.986 2583 160 25 2928 5486 793377841 793375282 0.000000e+00 3579.0
28 TraesCS2A01G572200 chr2B 83.669 1439 226 8 3934 5365 793354423 793352987 0.000000e+00 1347.0
29 TraesCS2A01G572200 chr2B 93.066 923 49 8 869 1782 793380518 793379602 0.000000e+00 1336.0
30 TraesCS2A01G572200 chr2B 98.371 614 10 0 1 614 159565612 159564999 0.000000e+00 1079.0
31 TraesCS2A01G572200 chr2B 89.872 701 58 7 2234 2929 793379198 793378506 0.000000e+00 889.0
32 TraesCS2A01G572200 chr2B 85.495 586 55 10 897 1476 793368132 793367571 9.180000e-163 584.0
33 TraesCS2A01G572200 chr2B 72.961 1165 279 27 4131 5286 793439177 793440314 2.160000e-99 374.0
34 TraesCS2A01G572200 chr2B 92.537 201 11 1 1936 2136 793379525 793379329 1.040000e-72 285.0
35 TraesCS2A01G572200 chr2B 78.407 477 73 21 1004 1472 793427090 793426636 3.750000e-72 283.0
36 TraesCS2A01G572200 chr2B 81.967 305 51 3 4159 4461 793397718 793397416 8.170000e-64 255.0
37 TraesCS2A01G572200 chr2B 86.364 88 12 0 1061 1148 798608652 798608739 5.240000e-16 97.1
38 TraesCS2A01G572200 chr2B 86.364 88 12 0 1061 1148 798732899 798732812 5.240000e-16 97.1
39 TraesCS2A01G572200 chr2B 92.308 65 4 1 1769 1833 793379586 793379523 2.440000e-14 91.6
40 TraesCS2A01G572200 chr2B 86.585 82 9 2 1061 1141 798571900 798571980 8.770000e-14 89.8
41 TraesCS2A01G572200 chr2B 88.235 51 4 2 2036 2085 861104 861153 6.880000e-05 60.2
42 TraesCS2A01G572200 chr5A 96.994 865 26 0 5487 6351 634496953 634496089 0.000000e+00 1454.0
43 TraesCS2A01G572200 chr5A 86.834 319 39 3 5487 5804 8516609 8516925 2.820000e-93 353.0
44 TraesCS2A01G572200 chr5A 95.041 121 5 1 1831 1951 656477313 656477432 8.410000e-44 189.0
45 TraesCS2A01G572200 chr5A 86.932 176 9 3 606 769 693314775 693314948 1.090000e-42 185.0
46 TraesCS2A01G572200 chr5A 94.017 117 5 2 1830 1945 598641157 598641272 6.540000e-40 176.0
47 TraesCS2A01G572200 chr5A 93.478 46 2 1 2137 2181 477394360 477394315 4.110000e-07 67.6
48 TraesCS2A01G572200 chr7B 84.383 794 94 11 5489 6253 463636316 463637108 0.000000e+00 752.0
49 TraesCS2A01G572200 chr7B 86.957 161 17 3 611 770 134527808 134527965 1.820000e-40 178.0
50 TraesCS2A01G572200 chr7B 95.455 44 1 1 2137 2180 747849671 747849629 1.140000e-07 69.4
51 TraesCS2A01G572200 chr7B 100.000 33 0 0 17 49 685034637 685034669 1.910000e-05 62.1
52 TraesCS2A01G572200 chr7D 90.840 393 32 4 5480 5872 73226215 73225827 2.030000e-144 523.0
53 TraesCS2A01G572200 chr7D 90.585 393 34 3 5480 5872 560896035 560895646 9.440000e-143 518.0
54 TraesCS2A01G572200 chr7D 91.273 275 23 1 5480 5754 88454152 88453879 2.160000e-99 374.0
55 TraesCS2A01G572200 chr7D 86.957 322 37 4 5490 5809 447255108 447255426 2.180000e-94 357.0
56 TraesCS2A01G572200 chr7D 91.270 126 9 2 1822 1946 545095906 545096030 3.040000e-38 171.0
57 TraesCS2A01G572200 chr7D 100.000 33 0 0 17 49 533619789 533619757 1.910000e-05 62.1
58 TraesCS2A01G572200 chr7A 88.535 314 32 4 5491 5803 4785810 4786120 1.670000e-100 377.0
59 TraesCS2A01G572200 chr7A 95.455 44 2 0 2135 2178 705545607 705545564 3.180000e-08 71.3
60 TraesCS2A01G572200 chr6A 85.938 320 43 2 5487 5804 101993562 101993243 2.190000e-89 340.0
61 TraesCS2A01G572200 chr6A 93.388 121 6 2 1823 1942 108945427 108945308 1.820000e-40 178.0
62 TraesCS2A01G572200 chr1D 86.174 311 40 2 5487 5796 159576430 159576122 3.670000e-87 333.0
63 TraesCS2A01G572200 chr1D 88.000 175 20 1 5488 5662 221918590 221918763 8.350000e-49 206.0
64 TraesCS2A01G572200 chr1D 87.861 173 21 0 5490 5662 18947955 18948127 3.000000e-48 204.0
65 TraesCS2A01G572200 chr1D 90.000 150 9 3 620 769 342447638 342447781 8.410000e-44 189.0
66 TraesCS2A01G572200 chr1D 80.663 181 32 3 5489 5667 221919741 221919562 3.090000e-28 137.0
67 TraesCS2A01G572200 chr1D 80.663 181 28 6 5489 5664 18948980 18948802 3.990000e-27 134.0
68 TraesCS2A01G572200 chr1D 93.617 47 2 1 2136 2181 489950710 489950664 1.140000e-07 69.4
69 TraesCS2A01G572200 chr4A 88.722 266 30 0 5488 5753 590152963 590152698 6.140000e-85 326.0
70 TraesCS2A01G572200 chr4A 87.500 272 33 1 5482 5753 598224531 598224261 4.780000e-81 313.0
71 TraesCS2A01G572200 chr4A 93.077 130 7 2 607 736 346633025 346633152 8.410000e-44 189.0
72 TraesCS2A01G572200 chr4A 100.000 33 0 0 17 49 17799339 17799371 1.910000e-05 62.1
73 TraesCS2A01G572200 chr4A 85.965 57 7 1 2127 2182 608228060 608228004 6.880000e-05 60.2
74 TraesCS2A01G572200 chr6D 88.716 257 25 3 5484 5738 16768552 16768806 1.720000e-80 311.0
75 TraesCS2A01G572200 chr6D 86.188 181 22 3 5488 5667 183950961 183951139 6.500000e-45 193.0
76 TraesCS2A01G572200 chr6D 85.326 184 25 2 5488 5670 183955779 183955597 8.410000e-44 189.0
77 TraesCS2A01G572200 chr6D 81.319 182 29 4 5488 5667 16769666 16769488 6.640000e-30 143.0
78 TraesCS2A01G572200 chr6D 90.909 55 4 1 2131 2184 319002199 319002145 8.830000e-09 73.1
79 TraesCS2A01G572200 chr4B 86.909 275 35 1 5478 5752 44472374 44472101 2.220000e-79 307.0
80 TraesCS2A01G572200 chr4B 86.691 278 36 1 5478 5755 44661613 44661337 2.220000e-79 307.0
81 TraesCS2A01G572200 chr5D 90.385 156 15 0 614 769 441116928 441117083 8.350000e-49 206.0
82 TraesCS2A01G572200 chr5D 91.270 126 10 1 1830 1955 544700384 544700508 3.040000e-38 171.0
83 TraesCS2A01G572200 chr5D 95.349 43 2 0 5975 6017 117909486 117909528 1.140000e-07 69.4
84 TraesCS2A01G572200 chr3A 88.535 157 13 5 617 771 745072577 745072424 1.090000e-42 185.0
85 TraesCS2A01G572200 chr3A 85.638 188 10 5 620 794 677842936 677842753 1.410000e-41 182.0
86 TraesCS2A01G572200 chr3A 84.571 175 14 5 617 779 724544955 724545128 1.830000e-35 161.0
87 TraesCS2A01G572200 chr4D 88.667 150 16 1 620 769 458556314 458556166 1.410000e-41 182.0
88 TraesCS2A01G572200 chr4D 87.302 63 6 2 735 795 173125715 173125653 3.180000e-08 71.3
89 TraesCS2A01G572200 chr4D 93.023 43 3 0 5975 6017 338959349 338959307 5.320000e-06 63.9
90 TraesCS2A01G572200 chr3D 96.330 109 4 0 1829 1937 268126246 268126138 5.060000e-41 180.0
91 TraesCS2A01G572200 chr3D 95.349 43 2 0 5975 6017 164391403 164391445 1.140000e-07 69.4
92 TraesCS2A01G572200 chr3B 94.118 119 6 1 1828 1945 454671492 454671374 5.060000e-41 180.0
93 TraesCS2A01G572200 chr3B 76.064 188 32 10 1951 2136 744364224 744364048 1.130000e-12 86.1
94 TraesCS2A01G572200 chr1A 95.536 112 5 0 1827 1938 119717407 119717296 5.060000e-41 180.0
95 TraesCS2A01G572200 chr1A 83.871 186 24 6 5487 5669 541705085 541705267 8.470000e-39 172.0
96 TraesCS2A01G572200 chr1A 96.721 61 1 1 5482 5542 91102475 91102416 4.050000e-17 100.0
97 TraesCS2A01G572200 chr1A 81.250 112 18 3 1974 2085 560466749 560466641 3.150000e-13 87.9
98 TraesCS2A01G572200 chrUn 93.913 115 7 0 1823 1937 81697118 81697232 2.350000e-39 174.0
99 TraesCS2A01G572200 chrUn 86.275 51 5 2 2036 2085 478469686 478469735 3.000000e-03 54.7
100 TraesCS2A01G572200 chr1B 84.571 175 15 6 5486 5653 398158201 398158370 5.090000e-36 163.0
101 TraesCS2A01G572200 chr1B 85.938 64 4 4 2136 2199 578093808 578093866 5.320000e-06 63.9
102 TraesCS2A01G572200 chr5B 81.871 171 18 8 617 774 450563098 450563268 1.440000e-26 132.0
103 TraesCS2A01G572200 chr5B 95.455 44 2 0 6270 6313 488188425 488188382 3.180000e-08 71.3
104 TraesCS2A01G572200 chr5B 95.238 42 2 0 2137 2178 99446881 99446922 4.110000e-07 67.6
105 TraesCS2A01G572200 chr5B 86.207 58 7 1 2137 2193 228272250 228272307 1.910000e-05 62.1
106 TraesCS2A01G572200 chr5B 88.235 51 4 2 2036 2085 486694120 486694071 6.880000e-05 60.2
107 TraesCS2A01G572200 chr5B 75.385 130 26 4 1958 2085 447002094 447002219 2.470000e-04 58.4
108 TraesCS2A01G572200 chr6B 88.406 69 8 0 6283 6351 243225886 243225818 4.080000e-12 84.2
109 TraesCS2A01G572200 chr6B 100.000 33 0 0 17 49 222004058 222004090 1.910000e-05 62.1
110 TraesCS2A01G572200 chr6B 76.033 121 23 4 1967 2085 57233688 57233572 2.470000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G572200 chr2A 768570258 768576608 6350 False 11729.000000 11729 100.000000 1 6351 1 chr2A.!!$F6 6350
1 TraesCS2A01G572200 chr2A 768620106 768620837 731 False 752.000000 752 85.210000 4629 5365 1 chr2A.!!$F7 736
2 TraesCS2A01G572200 chr2A 768545165 768546454 1289 False 442.000000 442 73.247000 4037 5331 1 chr2A.!!$F4 1294
3 TraesCS2A01G572200 chr2A 768602186 768603145 959 False 250.000000 329 81.983500 897 1833 2 chr2A.!!$F8 936
4 TraesCS2A01G572200 chr2D 643768260 643769694 1434 False 1463.000000 1463 85.108000 3932 5365 1 chr2D.!!$F4 1433
5 TraesCS2A01G572200 chr2D 643737385 643745557 8172 False 983.628571 4041 96.396714 888 5488 7 chr2D.!!$F5 4600
6 TraesCS2A01G572200 chr2D 643719694 643720879 1185 False 420.000000 420 73.585000 4131 5331 1 chr2D.!!$F3 1200
7 TraesCS2A01G572200 chr2D 643761693 643762590 897 False 379.000000 571 84.161500 948 1827 2 chr2D.!!$F6 879
8 TraesCS2A01G572200 chr2B 793352987 793354423 1436 True 1347.000000 1347 83.669000 3934 5365 1 chr2B.!!$R2 1431
9 TraesCS2A01G572200 chr2B 793375282 793380518 5236 True 1236.120000 3579 91.953800 869 5486 5 chr2B.!!$R7 4617
10 TraesCS2A01G572200 chr2B 159564999 159565612 613 True 1079.000000 1079 98.371000 1 614 1 chr2B.!!$R1 613
11 TraesCS2A01G572200 chr2B 793367571 793368132 561 True 584.000000 584 85.495000 897 1476 1 chr2B.!!$R3 579
12 TraesCS2A01G572200 chr2B 793439177 793440314 1137 False 374.000000 374 72.961000 4131 5286 1 chr2B.!!$F2 1155
13 TraesCS2A01G572200 chr5A 634496089 634496953 864 True 1454.000000 1454 96.994000 5487 6351 1 chr5A.!!$R2 864
14 TraesCS2A01G572200 chr7B 463636316 463637108 792 False 752.000000 752 84.383000 5489 6253 1 chr7B.!!$F2 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 568 0.389556 GAGAAGGGGGACGAACGAAC 60.390 60.0 0.14 0.0 0.00 3.95 F
1526 1569 0.104304 GTACGGCACCATCAGTAGGG 59.896 60.0 0.00 0.0 0.00 3.53 F
2588 3042 0.035915 GGTCTGTGGGAAGGAAGAGC 60.036 60.0 0.00 0.0 0.00 4.09 F
3122 7125 0.168128 GCAAATCCAAAGGACCGTCG 59.832 55.0 0.00 0.0 32.98 5.12 F
4865 8896 1.114722 TACCTTGTCGGGGTTGACGT 61.115 55.0 0.00 0.0 41.87 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2407 2861 0.108396 GTTGCAAATGCCCCAACCTT 59.892 50.000 0.0 0.0 41.18 3.50 R
2768 3223 0.393077 CCCTCCAATACGCCGAAGAT 59.607 55.000 0.0 0.0 0.00 2.40 R
3865 7874 1.065647 TGATAACCCCCGTTGTTCCA 58.934 50.000 0.0 0.0 33.17 3.53 R
5080 9111 0.249120 CACTGGGCATCTGGTCGTAA 59.751 55.000 0.0 0.0 0.00 3.18 R
5806 9837 1.449778 GTCCGTGCCCTTAGCTTCC 60.450 63.158 0.0 0.0 44.23 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 0.966920 ACAAGTTCGAGACGGTCCAT 59.033 50.000 4.14 0.00 0.00 3.41
188 189 4.910585 ACGCGGGAATGGATCGGC 62.911 66.667 12.47 0.00 0.00 5.54
264 265 2.113243 GAAAGACCCCGAGCACCACT 62.113 60.000 0.00 0.00 0.00 4.00
462 463 3.191791 GGAGATAGAGGAGATGCGTAACC 59.808 52.174 0.00 0.00 0.00 2.85
463 464 4.076394 GAGATAGAGGAGATGCGTAACCT 58.924 47.826 3.42 3.42 35.29 3.50
464 465 4.475345 AGATAGAGGAGATGCGTAACCTT 58.525 43.478 5.10 0.19 32.53 3.50
466 467 2.457598 AGAGGAGATGCGTAACCTTCA 58.542 47.619 5.10 0.00 32.53 3.02
567 568 0.389556 GAGAAGGGGGACGAACGAAC 60.390 60.000 0.14 0.00 0.00 3.95
614 615 4.056740 CTCGCACGTTAGGAGTAGAGATA 58.943 47.826 0.00 0.00 31.60 1.98
615 616 4.056740 TCGCACGTTAGGAGTAGAGATAG 58.943 47.826 0.00 0.00 0.00 2.08
616 617 4.056740 CGCACGTTAGGAGTAGAGATAGA 58.943 47.826 0.00 0.00 0.00 1.98
617 618 4.691685 CGCACGTTAGGAGTAGAGATAGAT 59.308 45.833 0.00 0.00 0.00 1.98
618 619 5.179742 CGCACGTTAGGAGTAGAGATAGATT 59.820 44.000 0.00 0.00 0.00 2.40
619 620 6.604930 GCACGTTAGGAGTAGAGATAGATTC 58.395 44.000 0.00 0.00 0.00 2.52
620 621 6.428771 GCACGTTAGGAGTAGAGATAGATTCT 59.571 42.308 0.00 0.00 37.41 2.40
630 631 4.776795 GAGATAGATTCTCCCTCCGTTC 57.223 50.000 0.00 0.00 44.46 3.95
631 632 3.502356 AGATAGATTCTCCCTCCGTTCC 58.498 50.000 0.00 0.00 0.00 3.62
632 633 3.141272 AGATAGATTCTCCCTCCGTTCCT 59.859 47.826 0.00 0.00 0.00 3.36
633 634 4.354387 AGATAGATTCTCCCTCCGTTCCTA 59.646 45.833 0.00 0.00 0.00 2.94
634 635 3.399952 AGATTCTCCCTCCGTTCCTAA 57.600 47.619 0.00 0.00 0.00 2.69
635 636 3.721021 AGATTCTCCCTCCGTTCCTAAA 58.279 45.455 0.00 0.00 0.00 1.85
636 637 4.299485 AGATTCTCCCTCCGTTCCTAAAT 58.701 43.478 0.00 0.00 0.00 1.40
637 638 5.464984 AGATTCTCCCTCCGTTCCTAAATA 58.535 41.667 0.00 0.00 0.00 1.40
638 639 5.304871 AGATTCTCCCTCCGTTCCTAAATAC 59.695 44.000 0.00 0.00 0.00 1.89
639 640 4.261411 TCTCCCTCCGTTCCTAAATACT 57.739 45.455 0.00 0.00 0.00 2.12
640 641 4.617593 TCTCCCTCCGTTCCTAAATACTT 58.382 43.478 0.00 0.00 0.00 2.24
641 642 4.404715 TCTCCCTCCGTTCCTAAATACTTG 59.595 45.833 0.00 0.00 0.00 3.16
642 643 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
643 644 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
644 645 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
645 646 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
646 647 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
647 648 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
648 649 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
649 650 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
650 651 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
651 652 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
652 653 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
653 654 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
654 655 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
655 656 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
656 657 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
658 659 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
659 660 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
660 661 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
661 662 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
662 663 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
663 664 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
664 665 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
665 666 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
666 667 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
667 668 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
668 669 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
669 670 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
670 671 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
671 672 3.498397 AGGCATTTCAACAAGTGACTACG 59.502 43.478 0.00 0.00 35.84 3.51
672 673 3.250040 GGCATTTCAACAAGTGACTACGT 59.750 43.478 0.00 0.00 35.39 3.57
673 674 4.449743 GGCATTTCAACAAGTGACTACGTA 59.550 41.667 0.00 0.00 35.39 3.57
674 675 5.371629 GCATTTCAACAAGTGACTACGTAC 58.628 41.667 0.00 0.00 35.39 3.67
675 676 5.595993 CATTTCAACAAGTGACTACGTACG 58.404 41.667 15.01 15.01 35.39 3.67
676 677 3.272439 TCAACAAGTGACTACGTACGG 57.728 47.619 21.06 5.00 0.00 4.02
677 678 2.877786 TCAACAAGTGACTACGTACGGA 59.122 45.455 21.06 10.81 0.00 4.69
678 679 2.975851 CAACAAGTGACTACGTACGGAC 59.024 50.000 21.06 7.76 0.00 4.79
679 680 1.537202 ACAAGTGACTACGTACGGACC 59.463 52.381 21.06 4.15 0.00 4.46
680 681 1.536766 CAAGTGACTACGTACGGACCA 59.463 52.381 21.06 6.98 0.00 4.02
681 682 1.896220 AGTGACTACGTACGGACCAA 58.104 50.000 21.06 0.00 0.00 3.67
682 683 2.229792 AGTGACTACGTACGGACCAAA 58.770 47.619 21.06 0.00 0.00 3.28
683 684 2.622942 AGTGACTACGTACGGACCAAAA 59.377 45.455 21.06 0.00 0.00 2.44
684 685 3.256631 AGTGACTACGTACGGACCAAAAT 59.743 43.478 21.06 0.00 0.00 1.82
685 686 3.365820 GTGACTACGTACGGACCAAAATG 59.634 47.826 21.06 0.00 0.00 2.32
686 687 3.255395 TGACTACGTACGGACCAAAATGA 59.745 43.478 21.06 0.00 0.00 2.57
687 688 3.841643 ACTACGTACGGACCAAAATGAG 58.158 45.455 21.06 0.00 0.00 2.90
688 689 2.825861 ACGTACGGACCAAAATGAGT 57.174 45.000 21.06 0.00 0.00 3.41
689 690 2.409975 ACGTACGGACCAAAATGAGTG 58.590 47.619 21.06 0.00 0.00 3.51
690 691 2.036217 ACGTACGGACCAAAATGAGTGA 59.964 45.455 21.06 0.00 0.00 3.41
691 692 3.061322 CGTACGGACCAAAATGAGTGAA 58.939 45.455 7.57 0.00 0.00 3.18
692 693 3.682858 CGTACGGACCAAAATGAGTGAAT 59.317 43.478 7.57 0.00 0.00 2.57
693 694 4.201685 CGTACGGACCAAAATGAGTGAATC 60.202 45.833 7.57 0.00 0.00 2.52
694 695 4.021102 ACGGACCAAAATGAGTGAATCT 57.979 40.909 0.00 0.00 0.00 2.40
695 696 5.160607 ACGGACCAAAATGAGTGAATCTA 57.839 39.130 0.00 0.00 0.00 1.98
696 697 4.935808 ACGGACCAAAATGAGTGAATCTAC 59.064 41.667 0.00 0.00 0.00 2.59
697 698 4.935205 CGGACCAAAATGAGTGAATCTACA 59.065 41.667 0.00 0.00 0.00 2.74
698 699 5.586243 CGGACCAAAATGAGTGAATCTACAT 59.414 40.000 0.00 0.00 0.00 2.29
699 700 6.094048 CGGACCAAAATGAGTGAATCTACATT 59.906 38.462 0.00 0.00 34.99 2.71
700 701 7.475840 GGACCAAAATGAGTGAATCTACATTC 58.524 38.462 0.00 0.00 39.24 2.67
701 702 7.337942 GGACCAAAATGAGTGAATCTACATTCT 59.662 37.037 0.00 0.00 39.49 2.40
702 703 9.383519 GACCAAAATGAGTGAATCTACATTCTA 57.616 33.333 0.00 0.00 39.49 2.10
703 704 9.739276 ACCAAAATGAGTGAATCTACATTCTAA 57.261 29.630 0.00 0.00 39.49 2.10
742 743 8.927675 ACATCCCTATGTAGTAGTCTAGAAAG 57.072 38.462 0.00 0.00 44.66 2.62
743 744 8.725256 ACATCCCTATGTAGTAGTCTAGAAAGA 58.275 37.037 0.00 0.00 44.66 2.52
760 761 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
761 762 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
762 763 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
763 764 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
764 765 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
765 766 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
766 767 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
767 768 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
768 769 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
769 770 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
770 771 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
771 772 3.744940 TTAGGAACGGAGGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
772 773 2.617840 AGGAACGGAGGGAGTAGAAA 57.382 50.000 0.00 0.00 0.00 2.52
773 774 2.458620 AGGAACGGAGGGAGTAGAAAG 58.541 52.381 0.00 0.00 0.00 2.62
774 775 2.042706 AGGAACGGAGGGAGTAGAAAGA 59.957 50.000 0.00 0.00 0.00 2.52
775 776 2.830321 GGAACGGAGGGAGTAGAAAGAA 59.170 50.000 0.00 0.00 0.00 2.52
776 777 3.260128 GGAACGGAGGGAGTAGAAAGAAA 59.740 47.826 0.00 0.00 0.00 2.52
777 778 4.496360 GAACGGAGGGAGTAGAAAGAAAG 58.504 47.826 0.00 0.00 0.00 2.62
778 779 3.775910 ACGGAGGGAGTAGAAAGAAAGA 58.224 45.455 0.00 0.00 0.00 2.52
779 780 4.158015 ACGGAGGGAGTAGAAAGAAAGAA 58.842 43.478 0.00 0.00 0.00 2.52
780 781 4.591924 ACGGAGGGAGTAGAAAGAAAGAAA 59.408 41.667 0.00 0.00 0.00 2.52
781 782 5.172205 CGGAGGGAGTAGAAAGAAAGAAAG 58.828 45.833 0.00 0.00 0.00 2.62
782 783 5.492895 GGAGGGAGTAGAAAGAAAGAAAGG 58.507 45.833 0.00 0.00 0.00 3.11
783 784 5.492895 GAGGGAGTAGAAAGAAAGAAAGGG 58.507 45.833 0.00 0.00 0.00 3.95
784 785 5.163390 AGGGAGTAGAAAGAAAGAAAGGGA 58.837 41.667 0.00 0.00 0.00 4.20
785 786 5.611408 AGGGAGTAGAAAGAAAGAAAGGGAA 59.389 40.000 0.00 0.00 0.00 3.97
786 787 5.941058 GGGAGTAGAAAGAAAGAAAGGGAAG 59.059 44.000 0.00 0.00 0.00 3.46
787 788 6.466038 GGGAGTAGAAAGAAAGAAAGGGAAGT 60.466 42.308 0.00 0.00 0.00 3.01
788 789 6.999272 GGAGTAGAAAGAAAGAAAGGGAAGTT 59.001 38.462 0.00 0.00 0.00 2.66
789 790 7.502895 GGAGTAGAAAGAAAGAAAGGGAAGTTT 59.497 37.037 0.00 0.00 0.00 2.66
790 791 8.824756 AGTAGAAAGAAAGAAAGGGAAGTTTT 57.175 30.769 0.00 0.00 0.00 2.43
791 792 8.687242 AGTAGAAAGAAAGAAAGGGAAGTTTTG 58.313 33.333 0.00 0.00 0.00 2.44
792 793 7.482169 AGAAAGAAAGAAAGGGAAGTTTTGT 57.518 32.000 0.00 0.00 0.00 2.83
793 794 8.589701 AGAAAGAAAGAAAGGGAAGTTTTGTA 57.410 30.769 0.00 0.00 0.00 2.41
794 795 8.467598 AGAAAGAAAGAAAGGGAAGTTTTGTAC 58.532 33.333 0.00 0.00 0.00 2.90
795 796 6.373186 AGAAAGAAAGGGAAGTTTTGTACG 57.627 37.500 0.00 0.00 0.00 3.67
796 797 5.884232 AGAAAGAAAGGGAAGTTTTGTACGT 59.116 36.000 0.00 0.00 0.00 3.57
797 798 7.049754 AGAAAGAAAGGGAAGTTTTGTACGTA 58.950 34.615 0.00 0.00 0.00 3.57
798 799 6.609237 AAGAAAGGGAAGTTTTGTACGTAC 57.391 37.500 18.90 18.90 0.00 3.67
799 800 5.059161 AGAAAGGGAAGTTTTGTACGTACC 58.941 41.667 22.43 7.38 39.36 3.34
800 801 4.420522 AAGGGAAGTTTTGTACGTACCA 57.579 40.909 22.43 9.46 41.36 3.25
801 802 4.420522 AGGGAAGTTTTGTACGTACCAA 57.579 40.909 22.43 15.27 41.36 3.67
802 803 4.129380 AGGGAAGTTTTGTACGTACCAAC 58.871 43.478 22.43 22.05 41.36 3.77
803 804 3.250762 GGGAAGTTTTGTACGTACCAACC 59.749 47.826 22.43 14.10 38.94 3.77
804 805 3.876320 GGAAGTTTTGTACGTACCAACCA 59.124 43.478 22.43 0.72 0.00 3.67
805 806 4.335037 GGAAGTTTTGTACGTACCAACCAA 59.665 41.667 22.43 7.33 0.00 3.67
806 807 4.880886 AGTTTTGTACGTACCAACCAAC 57.119 40.909 22.43 15.92 0.00 3.77
807 808 4.260170 AGTTTTGTACGTACCAACCAACA 58.740 39.130 22.43 0.99 0.00 3.33
808 809 4.699257 AGTTTTGTACGTACCAACCAACAA 59.301 37.500 22.43 7.68 0.00 2.83
809 810 4.612932 TTTGTACGTACCAACCAACAAC 57.387 40.909 22.43 0.00 30.57 3.32
810 811 2.200067 TGTACGTACCAACCAACAACG 58.800 47.619 22.43 0.00 39.37 4.10
811 812 3.457099 ACGTACCAACCAACAACGT 57.543 47.368 0.00 0.00 41.55 3.99
812 813 2.593346 ACGTACCAACCAACAACGTA 57.407 45.000 0.00 0.00 44.21 3.57
813 814 2.200899 ACGTACCAACCAACAACGTAC 58.799 47.619 0.00 0.00 44.21 3.67
814 815 2.200067 CGTACCAACCAACAACGTACA 58.800 47.619 0.00 0.00 31.65 2.90
815 816 2.606725 CGTACCAACCAACAACGTACAA 59.393 45.455 0.00 0.00 31.65 2.41
816 817 3.302610 CGTACCAACCAACAACGTACAAG 60.303 47.826 0.00 0.00 31.65 3.16
817 818 1.402613 ACCAACCAACAACGTACAAGC 59.597 47.619 0.00 0.00 0.00 4.01
818 819 1.402259 CCAACCAACAACGTACAAGCA 59.598 47.619 0.00 0.00 0.00 3.91
819 820 2.034053 CCAACCAACAACGTACAAGCAT 59.966 45.455 0.00 0.00 0.00 3.79
820 821 3.296628 CAACCAACAACGTACAAGCATC 58.703 45.455 0.00 0.00 0.00 3.91
821 822 2.566913 ACCAACAACGTACAAGCATCA 58.433 42.857 0.00 0.00 0.00 3.07
822 823 3.146066 ACCAACAACGTACAAGCATCAT 58.854 40.909 0.00 0.00 0.00 2.45
823 824 4.320023 ACCAACAACGTACAAGCATCATA 58.680 39.130 0.00 0.00 0.00 2.15
824 825 4.941263 ACCAACAACGTACAAGCATCATAT 59.059 37.500 0.00 0.00 0.00 1.78
825 826 6.110033 ACCAACAACGTACAAGCATCATATA 58.890 36.000 0.00 0.00 0.00 0.86
826 827 6.036735 ACCAACAACGTACAAGCATCATATAC 59.963 38.462 0.00 0.00 0.00 1.47
827 828 6.257849 CCAACAACGTACAAGCATCATATACT 59.742 38.462 0.00 0.00 0.00 2.12
828 829 7.201609 CCAACAACGTACAAGCATCATATACTT 60.202 37.037 0.00 0.00 0.00 2.24
829 830 7.843490 ACAACGTACAAGCATCATATACTTT 57.157 32.000 0.00 0.00 0.00 2.66
830 831 7.684670 ACAACGTACAAGCATCATATACTTTG 58.315 34.615 0.00 0.00 33.56 2.77
831 832 7.547722 ACAACGTACAAGCATCATATACTTTGA 59.452 33.333 0.00 0.00 32.41 2.69
832 833 8.551205 CAACGTACAAGCATCATATACTTTGAT 58.449 33.333 0.00 0.00 34.15 2.57
833 834 8.662781 ACGTACAAGCATCATATACTTTGATT 57.337 30.769 0.00 0.00 31.50 2.57
834 835 9.758651 ACGTACAAGCATCATATACTTTGATTA 57.241 29.630 0.00 0.00 31.50 1.75
837 838 8.915057 ACAAGCATCATATACTTTGATTAGCT 57.085 30.769 0.00 0.00 35.53 3.32
838 839 9.347240 ACAAGCATCATATACTTTGATTAGCTT 57.653 29.630 0.00 6.57 40.56 3.74
841 842 9.442047 AGCATCATATACTTTGATTAGCTTACC 57.558 33.333 0.00 0.00 32.15 2.85
842 843 8.669243 GCATCATATACTTTGATTAGCTTACCC 58.331 37.037 0.00 0.00 31.50 3.69
843 844 9.167311 CATCATATACTTTGATTAGCTTACCCC 57.833 37.037 0.00 0.00 31.50 4.95
844 845 7.383687 TCATATACTTTGATTAGCTTACCCCG 58.616 38.462 0.00 0.00 0.00 5.73
845 846 2.640184 ACTTTGATTAGCTTACCCCGC 58.360 47.619 0.00 0.00 0.00 6.13
846 847 2.026636 ACTTTGATTAGCTTACCCCGCA 60.027 45.455 0.00 0.00 0.00 5.69
847 848 2.791347 TTGATTAGCTTACCCCGCAA 57.209 45.000 0.00 0.00 0.00 4.85
848 849 2.791347 TGATTAGCTTACCCCGCAAA 57.209 45.000 0.00 0.00 0.00 3.68
849 850 3.074675 TGATTAGCTTACCCCGCAAAA 57.925 42.857 0.00 0.00 0.00 2.44
850 851 3.422796 TGATTAGCTTACCCCGCAAAAA 58.577 40.909 0.00 0.00 0.00 1.94
883 884 8.882415 AATATTGATTAGCTGGCAAAGATTTG 57.118 30.769 0.00 0.84 41.03 2.32
888 889 6.991531 TGATTAGCTGGCAAAGATTTGTTTTT 59.008 30.769 0.00 0.00 40.24 1.94
923 924 4.749245 AAGATTTTTGTCTCGCGTTGAT 57.251 36.364 5.77 0.00 0.00 2.57
1106 1121 4.849329 CCGCCTCGTCTACCGCAC 62.849 72.222 0.00 0.00 36.19 5.34
1148 1163 1.926511 GCCCTCTTCGTCGTCGGTAA 61.927 60.000 1.55 0.00 37.69 2.85
1153 1168 2.412870 TCTTCGTCGTCGGTAAGTACA 58.587 47.619 1.55 0.00 37.69 2.90
1159 1177 1.390664 CGTCGGTAAGTACACACGCG 61.391 60.000 3.53 3.53 0.00 6.01
1337 1359 2.982130 CTGGGCCACTCTAACGCT 59.018 61.111 0.00 0.00 0.00 5.07
1526 1569 0.104304 GTACGGCACCATCAGTAGGG 59.896 60.000 0.00 0.00 0.00 3.53
1696 1784 8.987890 TGATACGGATCATGTATGTATTTGTTG 58.012 33.333 6.12 0.00 37.15 3.33
1718 1806 1.921243 TTATGACGTGATGCGGAGTG 58.079 50.000 0.00 0.00 46.52 3.51
1809 2055 2.995466 CAGTGGCCATACTGTTTGTG 57.005 50.000 9.72 0.00 42.38 3.33
1837 2084 8.208575 GGAATGACTATTAATTCCTACTCCCT 57.791 38.462 7.09 0.00 45.64 4.20
1838 2085 8.315482 GGAATGACTATTAATTCCTACTCCCTC 58.685 40.741 7.09 0.00 45.64 4.30
1839 2086 7.800300 ATGACTATTAATTCCTACTCCCTCC 57.200 40.000 0.00 0.00 0.00 4.30
1840 2087 5.773680 TGACTATTAATTCCTACTCCCTCCG 59.226 44.000 0.00 0.00 0.00 4.63
1841 2088 5.713807 ACTATTAATTCCTACTCCCTCCGT 58.286 41.667 0.00 0.00 0.00 4.69
1842 2089 6.141790 ACTATTAATTCCTACTCCCTCCGTT 58.858 40.000 0.00 0.00 0.00 4.44
1843 2090 5.548181 ATTAATTCCTACTCCCTCCGTTC 57.452 43.478 0.00 0.00 0.00 3.95
1844 2091 1.400737 ATTCCTACTCCCTCCGTTCG 58.599 55.000 0.00 0.00 0.00 3.95
1845 2092 0.682209 TTCCTACTCCCTCCGTTCGG 60.682 60.000 4.74 4.74 0.00 4.30
1846 2093 1.077212 CCTACTCCCTCCGTTCGGA 60.077 63.158 13.34 13.34 0.00 4.55
1847 2094 0.682209 CCTACTCCCTCCGTTCGGAA 60.682 60.000 14.79 0.04 33.41 4.30
1848 2095 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
1849 2096 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
1850 2097 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1851 2098 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1852 2099 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1853 2100 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1854 2101 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1855 2102 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1856 2103 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1857 2104 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1858 2105 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
1859 2106 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
1860 2107 3.495193 CGTTCGGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
1861 2108 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
1862 2109 4.561606 CGTTCGGAATTACTTGTCTCGAAT 59.438 41.667 0.00 0.00 37.46 3.34
1863 2110 5.740569 CGTTCGGAATTACTTGTCTCGAATA 59.259 40.000 0.00 0.00 37.46 1.75
1864 2111 6.417044 CGTTCGGAATTACTTGTCTCGAATAT 59.583 38.462 0.00 0.00 37.46 1.28
1865 2112 7.588854 CGTTCGGAATTACTTGTCTCGAATATA 59.411 37.037 0.00 0.00 37.46 0.86
1866 2113 8.903723 GTTCGGAATTACTTGTCTCGAATATAG 58.096 37.037 0.00 0.00 37.46 1.31
1867 2114 8.387190 TCGGAATTACTTGTCTCGAATATAGA 57.613 34.615 0.00 0.00 0.00 1.98
1868 2115 9.011095 TCGGAATTACTTGTCTCGAATATAGAT 57.989 33.333 0.00 0.00 0.00 1.98
1869 2116 9.066939 CGGAATTACTTGTCTCGAATATAGATG 57.933 37.037 0.00 0.00 0.00 2.90
1870 2117 9.915629 GGAATTACTTGTCTCGAATATAGATGT 57.084 33.333 0.00 0.00 0.00 3.06
1901 2148 9.583765 AGAACTAAAATACGTCTAGAAACATCC 57.416 33.333 0.00 0.00 0.00 3.51
1902 2149 9.362539 GAACTAAAATACGTCTAGAAACATCCA 57.637 33.333 0.00 0.00 0.00 3.41
1903 2150 9.886132 AACTAAAATACGTCTAGAAACATCCAT 57.114 29.630 0.00 0.00 0.00 3.41
1904 2151 9.886132 ACTAAAATACGTCTAGAAACATCCATT 57.114 29.630 0.00 0.00 0.00 3.16
1908 2155 8.425577 AATACGTCTAGAAACATCCATTTCTG 57.574 34.615 10.31 2.50 46.15 3.02
1909 2156 4.631813 ACGTCTAGAAACATCCATTTCTGC 59.368 41.667 10.31 1.78 46.15 4.26
1910 2157 4.259970 CGTCTAGAAACATCCATTTCTGCG 60.260 45.833 10.31 8.42 46.15 5.18
1911 2158 4.870426 GTCTAGAAACATCCATTTCTGCGA 59.130 41.667 10.31 5.02 46.15 5.10
1912 2159 4.870426 TCTAGAAACATCCATTTCTGCGAC 59.130 41.667 10.31 0.00 46.15 5.19
1913 2160 3.411446 AGAAACATCCATTTCTGCGACA 58.589 40.909 0.09 0.00 45.22 4.35
1914 2161 3.820467 AGAAACATCCATTTCTGCGACAA 59.180 39.130 0.09 0.00 45.22 3.18
1915 2162 3.837213 AACATCCATTTCTGCGACAAG 57.163 42.857 0.00 0.00 0.00 3.16
1916 2163 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
1917 2164 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
1918 2165 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
1919 2166 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
1920 2167 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
1921 2168 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
1922 2169 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
1923 2170 4.155826 CCATTTCTGCGACAAGTAATTCCA 59.844 41.667 0.00 0.00 0.00 3.53
1924 2171 5.335583 CCATTTCTGCGACAAGTAATTCCAA 60.336 40.000 0.00 0.00 0.00 3.53
1925 2172 5.759506 TTTCTGCGACAAGTAATTCCAAA 57.240 34.783 0.00 0.00 0.00 3.28
1926 2173 4.742438 TCTGCGACAAGTAATTCCAAAC 57.258 40.909 0.00 0.00 0.00 2.93
1927 2174 4.130857 TCTGCGACAAGTAATTCCAAACA 58.869 39.130 0.00 0.00 0.00 2.83
1928 2175 4.213270 TCTGCGACAAGTAATTCCAAACAG 59.787 41.667 0.00 0.00 0.00 3.16
1929 2176 4.130857 TGCGACAAGTAATTCCAAACAGA 58.869 39.130 0.00 0.00 0.00 3.41
1930 2177 4.213270 TGCGACAAGTAATTCCAAACAGAG 59.787 41.667 0.00 0.00 0.00 3.35
1931 2178 4.378459 GCGACAAGTAATTCCAAACAGAGG 60.378 45.833 0.00 0.00 0.00 3.69
1932 2179 4.154195 CGACAAGTAATTCCAAACAGAGGG 59.846 45.833 0.00 0.00 0.00 4.30
1933 2180 5.313712 GACAAGTAATTCCAAACAGAGGGA 58.686 41.667 0.00 0.00 0.00 4.20
1934 2181 5.316987 ACAAGTAATTCCAAACAGAGGGAG 58.683 41.667 0.00 0.00 34.02 4.30
1935 2182 5.163088 ACAAGTAATTCCAAACAGAGGGAGT 60.163 40.000 0.00 0.00 34.02 3.85
1936 2183 6.043938 ACAAGTAATTCCAAACAGAGGGAGTA 59.956 38.462 0.00 0.00 34.02 2.59
1937 2184 6.051179 AGTAATTCCAAACAGAGGGAGTAC 57.949 41.667 0.00 0.00 34.02 2.73
1938 2185 4.993705 AATTCCAAACAGAGGGAGTACA 57.006 40.909 0.00 0.00 34.02 2.90
1939 2186 5.520748 AATTCCAAACAGAGGGAGTACAT 57.479 39.130 0.00 0.00 34.02 2.29
1971 2218 8.798748 AAGAATAATAATACTCACTTCGTCCG 57.201 34.615 0.00 0.00 0.00 4.79
2141 2388 9.362539 GGTGTAATTTATATAGATGGTACCACG 57.637 37.037 19.09 0.00 0.00 4.94
2142 2389 9.918630 GTGTAATTTATATAGATGGTACCACGT 57.081 33.333 19.09 10.05 0.00 4.49
2143 2390 9.917129 TGTAATTTATATAGATGGTACCACGTG 57.083 33.333 19.09 9.08 0.00 4.49
2146 2393 7.585579 TTTATATAGATGGTACCACGTGACA 57.414 36.000 19.09 10.74 0.00 3.58
2147 2394 3.795623 ATAGATGGTACCACGTGACAC 57.204 47.619 19.09 13.76 0.00 3.67
2148 2395 1.334160 AGATGGTACCACGTGACACA 58.666 50.000 19.09 10.73 0.00 3.72
2149 2396 1.899814 AGATGGTACCACGTGACACAT 59.100 47.619 19.09 15.05 0.00 3.21
2150 2397 1.999735 GATGGTACCACGTGACACATG 59.000 52.381 19.09 0.00 0.00 3.21
2151 2398 0.753867 TGGTACCACGTGACACATGT 59.246 50.000 19.30 7.66 33.47 3.21
2158 2405 1.194547 CACGTGACACATGTGGTAAGC 59.805 52.381 28.64 13.03 44.71 3.09
2159 2406 1.202592 ACGTGACACATGTGGTAAGCA 60.203 47.619 28.64 15.24 31.87 3.91
2160 2407 1.870402 CGTGACACATGTGGTAAGCAA 59.130 47.619 28.64 4.27 34.19 3.91
2161 2408 2.483877 CGTGACACATGTGGTAAGCAAT 59.516 45.455 28.64 5.90 34.19 3.56
2162 2409 3.058293 CGTGACACATGTGGTAAGCAATT 60.058 43.478 28.64 5.13 34.19 2.32
2163 2410 4.475944 GTGACACATGTGGTAAGCAATTC 58.524 43.478 28.64 14.32 34.19 2.17
2164 2411 4.023279 GTGACACATGTGGTAAGCAATTCA 60.023 41.667 28.64 16.61 34.19 2.57
2165 2412 4.582240 TGACACATGTGGTAAGCAATTCAA 59.418 37.500 28.64 3.73 34.19 2.69
2166 2413 5.068329 TGACACATGTGGTAAGCAATTCAAA 59.932 36.000 28.64 0.00 34.19 2.69
2167 2414 5.911752 ACACATGTGGTAAGCAATTCAAAA 58.088 33.333 28.64 0.00 34.19 2.44
2168 2415 6.344500 ACACATGTGGTAAGCAATTCAAAAA 58.656 32.000 28.64 0.00 34.19 1.94
2296 2750 4.634199 CATTGTTGGCAAGAACAAAGGAT 58.366 39.130 12.36 0.00 46.22 3.24
2304 2758 5.105063 GGCAAGAACAAAGGATATTTGCTC 58.895 41.667 6.30 0.00 39.36 4.26
2314 2768 1.141053 GATATTTGCTCGAGGGTGGGT 59.859 52.381 15.58 0.00 0.00 4.51
2331 2785 3.093057 TGGGTATGTGGTTGTTTATGGC 58.907 45.455 0.00 0.00 0.00 4.40
2332 2786 3.093057 GGGTATGTGGTTGTTTATGGCA 58.907 45.455 0.00 0.00 0.00 4.92
2369 2823 4.636206 GGGTGGAGTGTTTATCATCAACTC 59.364 45.833 0.00 0.00 0.00 3.01
2370 2824 5.491982 GGTGGAGTGTTTATCATCAACTCT 58.508 41.667 0.00 0.00 32.07 3.24
2387 2841 2.808919 CTCTGTGGGAGTAGTGGAGAA 58.191 52.381 0.00 0.00 37.30 2.87
2407 2861 0.463654 GGTAGCATTGCACCCATCGA 60.464 55.000 11.91 0.00 0.00 3.59
2446 2900 4.918810 ACAGTTTGAAAGTGAACATCCC 57.081 40.909 18.78 0.00 35.76 3.85
2447 2901 4.277476 ACAGTTTGAAAGTGAACATCCCA 58.723 39.130 18.78 0.00 35.76 4.37
2483 2937 4.123506 TCTTGTGAAGCACGTTGTTGATA 58.876 39.130 0.00 0.00 37.14 2.15
2494 2948 3.196901 ACGTTGTTGATACCTAGATGGCA 59.803 43.478 0.00 0.00 40.22 4.92
2556 3010 3.307199 GGGGACGTTGATGGAGAAACTTA 60.307 47.826 0.00 0.00 0.00 2.24
2588 3042 0.035915 GGTCTGTGGGAAGGAAGAGC 60.036 60.000 0.00 0.00 0.00 4.09
2589 3043 0.980423 GTCTGTGGGAAGGAAGAGCT 59.020 55.000 0.00 0.00 0.00 4.09
2591 3045 0.979665 CTGTGGGAAGGAAGAGCTCA 59.020 55.000 17.77 0.00 0.00 4.26
2622 3076 1.006086 TAGTGGCAATGTCAATCGCG 58.994 50.000 0.00 0.00 0.00 5.87
2623 3077 0.955428 AGTGGCAATGTCAATCGCGT 60.955 50.000 5.77 0.00 0.00 6.01
2646 3100 4.043561 TGGTGTAGGGGTTATTGTGAATGT 59.956 41.667 0.00 0.00 0.00 2.71
2663 3118 3.495434 ATGTGGACGAAGGTGGTTTTA 57.505 42.857 0.00 0.00 0.00 1.52
2688 3143 4.096984 GGAACATTAATGCCAAGTCTGGAG 59.903 45.833 15.48 0.00 46.92 3.86
2768 3223 5.428253 GAATTGTGGGCTAGAATCAGTGTA 58.572 41.667 0.00 0.00 0.00 2.90
2788 3243 1.887707 CTTCGGCGTATTGGAGGGC 60.888 63.158 6.85 0.00 35.25 5.19
2862 3321 8.015658 GTGGTCTTTGAGTATTTGATGTTGTAC 58.984 37.037 0.00 0.00 0.00 2.90
2874 3333 7.744087 TTTGATGTTGTACTAAGTCTGCAAT 57.256 32.000 0.00 0.00 0.00 3.56
2933 6929 7.759489 TGACTTAGTCCATTTTAGCAAATGT 57.241 32.000 10.10 0.00 45.57 2.71
3116 7119 5.549742 ACTTTCATTGCAAATCCAAAGGA 57.450 34.783 18.99 0.00 35.55 3.36
3119 7122 2.230992 TCATTGCAAATCCAAAGGACCG 59.769 45.455 1.71 0.00 32.98 4.79
3122 7125 0.168128 GCAAATCCAAAGGACCGTCG 59.832 55.000 0.00 0.00 32.98 5.12
3181 7184 1.606668 TGCATGAAAAACGGTCACTCC 59.393 47.619 0.00 0.00 0.00 3.85
3202 7205 5.572211 TCCGTGTAGTAGTTATTAGTTGCG 58.428 41.667 0.00 0.00 0.00 4.85
3381 7387 9.670719 GGAGCACAATTTCTAAGATTTTATAGC 57.329 33.333 0.00 0.00 0.00 2.97
3382 7388 9.670719 GAGCACAATTTCTAAGATTTTATAGCC 57.329 33.333 0.00 0.00 0.00 3.93
3532 7539 8.752005 TCAGAGATTTTGTGAAATATAAGGGG 57.248 34.615 0.00 0.00 35.65 4.79
3542 7549 8.506196 TGTGAAATATAAGGGGCTACTCTATT 57.494 34.615 0.00 0.00 0.00 1.73
3550 7557 5.291100 AGGGGCTACTCTATTCATCCATA 57.709 43.478 0.00 0.00 0.00 2.74
3682 7690 8.181904 AGTTAAAATGGACTGATGTGATTGTT 57.818 30.769 0.00 0.00 0.00 2.83
3686 7694 5.633830 ATGGACTGATGTGATTGTTTGAC 57.366 39.130 0.00 0.00 0.00 3.18
3701 7709 8.527810 TGATTGTTTGACTTTAAGAAAACCACT 58.472 29.630 17.94 8.44 32.72 4.00
3745 7754 3.638160 ACATGCCATCCATATTTGTGTCC 59.362 43.478 0.00 0.00 31.47 4.02
3859 7868 5.869344 TCACTTAAATCTGGTCATTGTCTCG 59.131 40.000 0.00 0.00 0.00 4.04
3865 7874 2.146342 CTGGTCATTGTCTCGCACTTT 58.854 47.619 0.00 0.00 0.00 2.66
3892 7901 2.201830 ACGGGGGTTATCAAGGATGAA 58.798 47.619 0.00 0.00 39.49 2.57
3919 7928 2.420058 ATGACCCTTTAAGAAGCCGG 57.580 50.000 0.00 0.00 0.00 6.13
4030 8050 5.048364 TGGATTTGTTCTTTATGGGTTGACG 60.048 40.000 0.00 0.00 0.00 4.35
4044 8065 3.560896 GGGTTGACGTTAAGCAAACACTA 59.439 43.478 21.58 0.00 38.03 2.74
4155 8186 2.417924 CCTCTTCTCATCCCTTGTCGTG 60.418 54.545 0.00 0.00 0.00 4.35
4796 8827 4.584325 GGCCTGCATCAATCCTATTGTTTA 59.416 41.667 0.00 0.00 0.00 2.01
4819 8850 5.387113 TCCCCATATATGACTTTGTGCTT 57.613 39.130 14.54 0.00 0.00 3.91
4825 8856 1.401761 ATGACTTTGTGCTTGTGCCA 58.598 45.000 0.00 0.00 38.71 4.92
4865 8896 1.114722 TACCTTGTCGGGGTTGACGT 61.115 55.000 0.00 0.00 41.87 4.34
5071 9102 2.361104 GCGGAAGTGGGGATGCAA 60.361 61.111 0.00 0.00 0.00 4.08
5080 9111 2.108952 AGTGGGGATGCAAGAGTTCTTT 59.891 45.455 0.00 0.00 33.11 2.52
5430 9461 5.662211 ACCATGTTGTTACGTACTGAAAC 57.338 39.130 0.00 0.00 0.00 2.78
5622 9653 3.434453 CCTGGGTGGTTTGTCTCAACTTA 60.434 47.826 0.00 0.00 0.00 2.24
5653 9684 1.580942 CGCTGGTCAATGGTGGTTG 59.419 57.895 0.00 0.00 0.00 3.77
5899 9930 4.021925 GCGTGGAGGGCCTCAGTT 62.022 66.667 33.27 0.00 34.31 3.16
5900 9931 2.266055 CGTGGAGGGCCTCAGTTC 59.734 66.667 33.27 17.30 34.31 3.01
6066 10128 2.093537 GAGCAGGGCGACATCTAGGG 62.094 65.000 0.00 0.00 0.00 3.53
6164 10226 2.697751 GACAGCATAGATCCAGTGTCCT 59.302 50.000 0.00 0.00 0.00 3.85
6268 10330 1.300481 GCGAGGATTTAGGGTTCAGC 58.700 55.000 0.00 0.00 0.00 4.26
6274 10336 1.487558 GATTTAGGGTTCAGCGGGGTA 59.512 52.381 0.00 0.00 0.00 3.69
6316 10378 4.211125 TCAAATACAACCTTTGACCAGCA 58.789 39.130 0.00 0.00 37.61 4.41
6323 10385 0.971386 CCTTTGACCAGCAGGCAAAT 59.029 50.000 14.67 0.00 38.93 2.32
6344 10406 3.509442 TCAGCCAGGGATGATTTTTGTT 58.491 40.909 1.40 0.00 35.47 2.83
6347 10409 2.417243 GCCAGGGATGATTTTTGTTCGG 60.417 50.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 1.884075 CGTCCAATCACGGAGTCCCA 61.884 60.000 2.80 0.00 41.61 4.37
188 189 5.408356 CATCCTCTTCTTGAATTTTGCTGG 58.592 41.667 0.00 0.00 0.00 4.85
264 265 3.943479 ATGCCGCCGCGAAGTACAA 62.943 57.895 15.93 0.00 38.08 2.41
303 304 3.607987 GCGACGAACGGCATCGAG 61.608 66.667 15.46 10.03 45.48 4.04
567 568 2.126580 GTCGGTGGTTCGTCCTCG 60.127 66.667 1.80 5.59 37.07 4.63
614 615 3.399952 TTAGGAACGGAGGGAGAATCT 57.600 47.619 0.00 0.00 33.73 2.40
615 616 4.691326 ATTTAGGAACGGAGGGAGAATC 57.309 45.455 0.00 0.00 0.00 2.52
616 617 5.217400 AGTATTTAGGAACGGAGGGAGAAT 58.783 41.667 0.00 0.00 0.00 2.40
617 618 4.617593 AGTATTTAGGAACGGAGGGAGAA 58.382 43.478 0.00 0.00 0.00 2.87
618 619 4.261411 AGTATTTAGGAACGGAGGGAGA 57.739 45.455 0.00 0.00 0.00 3.71
619 620 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
620 621 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
621 622 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
622 623 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
623 624 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
624 625 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
625 626 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
626 627 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
627 628 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
628 629 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
629 630 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
630 631 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
632 633 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
633 634 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
634 635 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
635 636 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
636 637 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
637 638 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
638 639 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
639 640 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
640 641 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
641 642 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
642 643 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
643 644 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
644 645 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
645 646 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
646 647 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
647 648 5.163953 CGTAGTCACTTGTTGAAATGCCTAG 60.164 44.000 0.00 0.00 35.39 3.02
648 649 4.688879 CGTAGTCACTTGTTGAAATGCCTA 59.311 41.667 0.00 0.00 35.39 3.93
649 650 3.498397 CGTAGTCACTTGTTGAAATGCCT 59.502 43.478 0.00 0.00 35.39 4.75
650 651 3.250040 ACGTAGTCACTTGTTGAAATGCC 59.750 43.478 0.00 0.00 29.74 4.40
651 652 4.468095 ACGTAGTCACTTGTTGAAATGC 57.532 40.909 0.00 0.00 29.74 3.56
652 653 5.388061 CCGTACGTAGTCACTTGTTGAAATG 60.388 44.000 15.21 0.00 43.93 2.32
653 654 4.682860 CCGTACGTAGTCACTTGTTGAAAT 59.317 41.667 15.21 0.00 43.93 2.17
654 655 4.043750 CCGTACGTAGTCACTTGTTGAAA 58.956 43.478 15.21 0.00 43.93 2.69
655 656 3.314913 TCCGTACGTAGTCACTTGTTGAA 59.685 43.478 15.21 0.00 43.93 2.69
656 657 2.877786 TCCGTACGTAGTCACTTGTTGA 59.122 45.455 15.21 0.00 43.93 3.18
657 658 2.975851 GTCCGTACGTAGTCACTTGTTG 59.024 50.000 15.21 0.00 43.93 3.33
658 659 2.030805 GGTCCGTACGTAGTCACTTGTT 60.031 50.000 15.21 0.00 43.93 2.83
659 660 1.537202 GGTCCGTACGTAGTCACTTGT 59.463 52.381 15.21 0.00 43.93 3.16
660 661 1.536766 TGGTCCGTACGTAGTCACTTG 59.463 52.381 15.21 0.00 43.93 3.16
661 662 1.896220 TGGTCCGTACGTAGTCACTT 58.104 50.000 15.21 0.00 43.93 3.16
662 663 1.896220 TTGGTCCGTACGTAGTCACT 58.104 50.000 15.21 0.00 43.93 3.41
663 664 2.704725 TTTGGTCCGTACGTAGTCAC 57.295 50.000 15.21 2.55 43.93 3.67
664 665 3.255395 TCATTTTGGTCCGTACGTAGTCA 59.745 43.478 15.21 4.25 43.93 3.41
665 666 3.836949 TCATTTTGGTCCGTACGTAGTC 58.163 45.455 15.21 1.56 43.93 2.59
667 668 3.611113 CACTCATTTTGGTCCGTACGTAG 59.389 47.826 15.21 0.00 0.00 3.51
668 669 3.255395 TCACTCATTTTGGTCCGTACGTA 59.745 43.478 15.21 0.00 0.00 3.57
669 670 2.036217 TCACTCATTTTGGTCCGTACGT 59.964 45.455 15.21 0.00 0.00 3.57
670 671 2.679450 TCACTCATTTTGGTCCGTACG 58.321 47.619 8.69 8.69 0.00 3.67
671 672 4.935808 AGATTCACTCATTTTGGTCCGTAC 59.064 41.667 0.00 0.00 0.00 3.67
672 673 5.160607 AGATTCACTCATTTTGGTCCGTA 57.839 39.130 0.00 0.00 0.00 4.02
673 674 4.021102 AGATTCACTCATTTTGGTCCGT 57.979 40.909 0.00 0.00 0.00 4.69
674 675 4.935205 TGTAGATTCACTCATTTTGGTCCG 59.065 41.667 0.00 0.00 0.00 4.79
675 676 7.337942 AGAATGTAGATTCACTCATTTTGGTCC 59.662 37.037 14.46 0.00 40.59 4.46
676 677 8.273780 AGAATGTAGATTCACTCATTTTGGTC 57.726 34.615 14.46 0.00 40.59 4.02
677 678 9.739276 TTAGAATGTAGATTCACTCATTTTGGT 57.261 29.630 14.46 0.00 40.59 3.67
718 719 9.005777 GTCTTTCTAGACTACTACATAGGGATG 57.994 40.741 0.00 0.00 45.99 3.51
734 735 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
735 736 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
736 737 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
737 738 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
738 739 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
739 740 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
740 741 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
741 742 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
742 743 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
743 744 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
744 745 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
745 746 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
746 747 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
747 748 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
748 749 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
749 750 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
750 751 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
751 752 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
752 753 3.267812 TCTTTCTACTCCCTCCGTTCCTA 59.732 47.826 0.00 0.00 0.00 2.94
753 754 2.042706 TCTTTCTACTCCCTCCGTTCCT 59.957 50.000 0.00 0.00 0.00 3.36
754 755 2.454538 TCTTTCTACTCCCTCCGTTCC 58.545 52.381 0.00 0.00 0.00 3.62
755 756 4.220163 TCTTTCTTTCTACTCCCTCCGTTC 59.780 45.833 0.00 0.00 0.00 3.95
756 757 4.158015 TCTTTCTTTCTACTCCCTCCGTT 58.842 43.478 0.00 0.00 0.00 4.44
757 758 3.775910 TCTTTCTTTCTACTCCCTCCGT 58.224 45.455 0.00 0.00 0.00 4.69
758 759 4.803098 TTCTTTCTTTCTACTCCCTCCG 57.197 45.455 0.00 0.00 0.00 4.63
759 760 5.492895 CCTTTCTTTCTTTCTACTCCCTCC 58.507 45.833 0.00 0.00 0.00 4.30
760 761 5.248705 TCCCTTTCTTTCTTTCTACTCCCTC 59.751 44.000 0.00 0.00 0.00 4.30
761 762 5.163390 TCCCTTTCTTTCTTTCTACTCCCT 58.837 41.667 0.00 0.00 0.00 4.20
762 763 5.500546 TCCCTTTCTTTCTTTCTACTCCC 57.499 43.478 0.00 0.00 0.00 4.30
763 764 6.535540 ACTTCCCTTTCTTTCTTTCTACTCC 58.464 40.000 0.00 0.00 0.00 3.85
764 765 8.453238 AAACTTCCCTTTCTTTCTTTCTACTC 57.547 34.615 0.00 0.00 0.00 2.59
765 766 8.687242 CAAAACTTCCCTTTCTTTCTTTCTACT 58.313 33.333 0.00 0.00 0.00 2.57
766 767 8.467598 ACAAAACTTCCCTTTCTTTCTTTCTAC 58.532 33.333 0.00 0.00 0.00 2.59
767 768 8.589701 ACAAAACTTCCCTTTCTTTCTTTCTA 57.410 30.769 0.00 0.00 0.00 2.10
768 769 7.482169 ACAAAACTTCCCTTTCTTTCTTTCT 57.518 32.000 0.00 0.00 0.00 2.52
769 770 7.431376 CGTACAAAACTTCCCTTTCTTTCTTTC 59.569 37.037 0.00 0.00 0.00 2.62
770 771 7.094075 ACGTACAAAACTTCCCTTTCTTTCTTT 60.094 33.333 0.00 0.00 0.00 2.52
771 772 6.376299 ACGTACAAAACTTCCCTTTCTTTCTT 59.624 34.615 0.00 0.00 0.00 2.52
772 773 5.884232 ACGTACAAAACTTCCCTTTCTTTCT 59.116 36.000 0.00 0.00 0.00 2.52
773 774 6.127810 ACGTACAAAACTTCCCTTTCTTTC 57.872 37.500 0.00 0.00 0.00 2.62
774 775 6.038603 GGTACGTACAAAACTTCCCTTTCTTT 59.961 38.462 26.02 0.00 0.00 2.52
775 776 5.528690 GGTACGTACAAAACTTCCCTTTCTT 59.471 40.000 26.02 0.00 0.00 2.52
776 777 5.059161 GGTACGTACAAAACTTCCCTTTCT 58.941 41.667 26.02 0.00 0.00 2.52
777 778 4.815846 TGGTACGTACAAAACTTCCCTTTC 59.184 41.667 26.02 5.14 0.00 2.62
778 779 4.779696 TGGTACGTACAAAACTTCCCTTT 58.220 39.130 26.02 0.00 0.00 3.11
779 780 4.420522 TGGTACGTACAAAACTTCCCTT 57.579 40.909 26.02 0.00 0.00 3.95
780 781 4.129380 GTTGGTACGTACAAAACTTCCCT 58.871 43.478 26.02 0.00 0.00 4.20
781 782 3.250762 GGTTGGTACGTACAAAACTTCCC 59.749 47.826 28.13 18.10 0.00 3.97
782 783 3.876320 TGGTTGGTACGTACAAAACTTCC 59.124 43.478 26.93 18.98 28.13 3.46
783 784 5.163774 TGTTGGTTGGTACGTACAAAACTTC 60.164 40.000 26.93 20.04 28.13 3.01
784 785 4.699257 TGTTGGTTGGTACGTACAAAACTT 59.301 37.500 26.93 0.00 28.13 2.66
785 786 4.260170 TGTTGGTTGGTACGTACAAAACT 58.740 39.130 26.93 0.00 28.13 2.66
786 787 4.612932 TGTTGGTTGGTACGTACAAAAC 57.387 40.909 26.02 23.85 0.00 2.43
787 788 4.436584 CGTTGTTGGTTGGTACGTACAAAA 60.437 41.667 26.02 16.77 33.16 2.44
788 789 3.063180 CGTTGTTGGTTGGTACGTACAAA 59.937 43.478 26.02 19.27 33.16 2.83
789 790 2.606725 CGTTGTTGGTTGGTACGTACAA 59.393 45.455 26.02 13.80 0.00 2.41
790 791 2.200067 CGTTGTTGGTTGGTACGTACA 58.800 47.619 26.02 10.47 0.00 2.90
791 792 2.200899 ACGTTGTTGGTTGGTACGTAC 58.799 47.619 17.56 17.56 42.86 3.67
792 793 2.593346 ACGTTGTTGGTTGGTACGTA 57.407 45.000 0.00 0.00 42.86 3.57
793 794 2.200899 GTACGTTGTTGGTTGGTACGT 58.799 47.619 0.00 0.00 45.96 3.57
794 795 2.200067 TGTACGTTGTTGGTTGGTACG 58.800 47.619 0.00 0.00 37.00 3.67
795 796 3.546616 GCTTGTACGTTGTTGGTTGGTAC 60.547 47.826 0.00 0.00 35.28 3.34
796 797 2.613133 GCTTGTACGTTGTTGGTTGGTA 59.387 45.455 0.00 0.00 0.00 3.25
797 798 1.402613 GCTTGTACGTTGTTGGTTGGT 59.597 47.619 0.00 0.00 0.00 3.67
798 799 1.402259 TGCTTGTACGTTGTTGGTTGG 59.598 47.619 0.00 0.00 0.00 3.77
799 800 2.834574 TGCTTGTACGTTGTTGGTTG 57.165 45.000 0.00 0.00 0.00 3.77
800 801 2.946329 TGATGCTTGTACGTTGTTGGTT 59.054 40.909 0.00 0.00 0.00 3.67
801 802 2.566913 TGATGCTTGTACGTTGTTGGT 58.433 42.857 0.00 0.00 0.00 3.67
802 803 3.829886 ATGATGCTTGTACGTTGTTGG 57.170 42.857 0.00 0.00 0.00 3.77
803 804 7.234187 AGTATATGATGCTTGTACGTTGTTG 57.766 36.000 0.00 0.00 0.00 3.33
804 805 7.843490 AAGTATATGATGCTTGTACGTTGTT 57.157 32.000 0.00 0.00 33.82 2.83
805 806 7.547722 TCAAAGTATATGATGCTTGTACGTTGT 59.452 33.333 0.00 0.00 36.66 3.32
806 807 7.905126 TCAAAGTATATGATGCTTGTACGTTG 58.095 34.615 0.00 0.00 35.34 4.10
807 808 8.662781 ATCAAAGTATATGATGCTTGTACGTT 57.337 30.769 0.00 0.00 36.21 3.99
808 809 8.662781 AATCAAAGTATATGATGCTTGTACGT 57.337 30.769 0.00 0.00 37.58 3.57
812 813 8.915057 AGCTAATCAAAGTATATGATGCTTGT 57.085 30.769 0.00 0.00 34.65 3.16
815 816 9.442047 GGTAAGCTAATCAAAGTATATGATGCT 57.558 33.333 0.00 0.00 37.85 3.79
816 817 8.669243 GGGTAAGCTAATCAAAGTATATGATGC 58.331 37.037 0.00 0.00 37.58 3.91
817 818 9.167311 GGGGTAAGCTAATCAAAGTATATGATG 57.833 37.037 0.00 0.00 37.58 3.07
818 819 8.041323 CGGGGTAAGCTAATCAAAGTATATGAT 58.959 37.037 0.00 0.00 39.15 2.45
819 820 7.383687 CGGGGTAAGCTAATCAAAGTATATGA 58.616 38.462 0.00 0.00 0.00 2.15
820 821 6.092259 GCGGGGTAAGCTAATCAAAGTATATG 59.908 42.308 0.00 0.00 0.00 1.78
821 822 6.171213 GCGGGGTAAGCTAATCAAAGTATAT 58.829 40.000 0.00 0.00 0.00 0.86
822 823 5.070714 TGCGGGGTAAGCTAATCAAAGTATA 59.929 40.000 0.00 0.00 35.28 1.47
823 824 4.141574 TGCGGGGTAAGCTAATCAAAGTAT 60.142 41.667 0.00 0.00 35.28 2.12
824 825 3.198200 TGCGGGGTAAGCTAATCAAAGTA 59.802 43.478 0.00 0.00 35.28 2.24
825 826 2.026636 TGCGGGGTAAGCTAATCAAAGT 60.027 45.455 0.00 0.00 35.28 2.66
826 827 2.639065 TGCGGGGTAAGCTAATCAAAG 58.361 47.619 0.00 0.00 35.28 2.77
827 828 2.791347 TGCGGGGTAAGCTAATCAAA 57.209 45.000 0.00 0.00 35.28 2.69
828 829 2.791347 TTGCGGGGTAAGCTAATCAA 57.209 45.000 0.00 0.00 35.28 2.57
829 830 2.791347 TTTGCGGGGTAAGCTAATCA 57.209 45.000 0.00 0.00 35.28 2.57
855 856 9.895138 AATCTTTGCCAGCTAATCAATATTTTT 57.105 25.926 0.00 0.00 0.00 1.94
856 857 9.895138 AAATCTTTGCCAGCTAATCAATATTTT 57.105 25.926 0.00 0.00 0.00 1.82
857 858 9.321562 CAAATCTTTGCCAGCTAATCAATATTT 57.678 29.630 0.00 0.00 0.00 1.40
858 859 8.480501 ACAAATCTTTGCCAGCTAATCAATATT 58.519 29.630 2.63 0.00 41.79 1.28
859 860 8.015185 ACAAATCTTTGCCAGCTAATCAATAT 57.985 30.769 2.63 0.00 41.79 1.28
860 861 7.408756 ACAAATCTTTGCCAGCTAATCAATA 57.591 32.000 2.63 0.00 41.79 1.90
861 862 6.290294 ACAAATCTTTGCCAGCTAATCAAT 57.710 33.333 2.63 0.00 41.79 2.57
862 863 5.726980 ACAAATCTTTGCCAGCTAATCAA 57.273 34.783 2.63 0.00 41.79 2.57
863 864 5.726980 AACAAATCTTTGCCAGCTAATCA 57.273 34.783 2.63 0.00 41.79 2.57
864 865 7.425577 AAAAACAAATCTTTGCCAGCTAATC 57.574 32.000 2.63 0.00 41.79 1.75
865 866 8.773645 GTTAAAAACAAATCTTTGCCAGCTAAT 58.226 29.630 2.63 0.00 41.79 1.73
866 867 7.766278 TGTTAAAAACAAATCTTTGCCAGCTAA 59.234 29.630 2.63 0.00 41.79 3.09
867 868 7.223777 GTGTTAAAAACAAATCTTTGCCAGCTA 59.776 33.333 2.63 0.00 44.16 3.32
877 878 6.402222 TGCCAGTTGTGTTAAAAACAAATCT 58.598 32.000 6.56 0.00 44.16 2.40
880 881 6.706270 TCTTTGCCAGTTGTGTTAAAAACAAA 59.294 30.769 6.56 0.00 44.16 2.83
883 884 6.902224 ATCTTTGCCAGTTGTGTTAAAAAC 57.098 33.333 0.00 0.00 0.00 2.43
888 889 6.402222 ACAAAAATCTTTGCCAGTTGTGTTA 58.598 32.000 0.00 0.00 44.96 2.41
923 924 6.929049 CAGAATCTTTAGGTTGTGTGTCACTA 59.071 38.462 4.27 0.00 35.11 2.74
1148 1163 1.659335 CGGTTCACGCGTGTGTACT 60.659 57.895 35.74 0.00 46.49 2.73
1159 1177 1.104630 AGCTAGCTAGGACGGTTCAC 58.895 55.000 17.69 2.20 0.00 3.18
1526 1569 0.605319 TGTCAAGGTCGTTGCCATCC 60.605 55.000 0.22 0.00 35.94 3.51
1696 1784 3.425525 CACTCCGCATCACGTCATAATAC 59.574 47.826 0.00 0.00 41.42 1.89
1803 2049 7.417456 GGAATTAATAGTCATTCCCCCACAAAC 60.417 40.741 5.03 0.00 41.90 2.93
1809 2055 7.331089 AGTAGGAATTAATAGTCATTCCCCC 57.669 40.000 11.54 4.18 46.89 5.40
1833 2080 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1834 2081 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1835 2082 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1836 2083 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
1837 2084 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
1838 2085 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
1839 2086 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
1840 2087 7.695869 ATATTCGAGACAAGTAATTCCGAAC 57.304 36.000 0.00 0.00 37.38 3.95
1841 2088 8.843262 TCTATATTCGAGACAAGTAATTCCGAA 58.157 33.333 0.00 0.00 38.59 4.30
1842 2089 8.387190 TCTATATTCGAGACAAGTAATTCCGA 57.613 34.615 0.00 0.00 0.00 4.55
1843 2090 9.066939 CATCTATATTCGAGACAAGTAATTCCG 57.933 37.037 0.00 0.00 0.00 4.30
1844 2091 9.915629 ACATCTATATTCGAGACAAGTAATTCC 57.084 33.333 0.00 0.00 0.00 3.01
1875 2122 9.583765 GGATGTTTCTAGACGTATTTTAGTTCT 57.416 33.333 0.00 0.00 0.00 3.01
1876 2123 9.362539 TGGATGTTTCTAGACGTATTTTAGTTC 57.637 33.333 0.00 0.00 0.00 3.01
1877 2124 9.886132 ATGGATGTTTCTAGACGTATTTTAGTT 57.114 29.630 0.00 0.00 0.00 2.24
1878 2125 9.886132 AATGGATGTTTCTAGACGTATTTTAGT 57.114 29.630 0.00 0.00 0.00 2.24
1881 2128 9.449719 AGAAATGGATGTTTCTAGACGTATTTT 57.550 29.630 0.00 0.00 44.36 1.82
1882 2129 8.883731 CAGAAATGGATGTTTCTAGACGTATTT 58.116 33.333 0.00 0.00 44.38 1.40
1883 2130 7.011482 GCAGAAATGGATGTTTCTAGACGTATT 59.989 37.037 0.00 0.00 44.38 1.89
1884 2131 6.480320 GCAGAAATGGATGTTTCTAGACGTAT 59.520 38.462 0.00 0.00 44.38 3.06
1885 2132 5.810587 GCAGAAATGGATGTTTCTAGACGTA 59.189 40.000 0.00 0.00 44.38 3.57
1886 2133 4.631813 GCAGAAATGGATGTTTCTAGACGT 59.368 41.667 0.00 0.00 44.38 4.34
1887 2134 4.259970 CGCAGAAATGGATGTTTCTAGACG 60.260 45.833 0.00 3.81 44.38 4.18
1888 2135 4.870426 TCGCAGAAATGGATGTTTCTAGAC 59.130 41.667 0.00 0.00 44.38 2.59
1889 2136 4.870426 GTCGCAGAAATGGATGTTTCTAGA 59.130 41.667 1.97 0.00 44.38 2.43
1890 2137 4.631377 TGTCGCAGAAATGGATGTTTCTAG 59.369 41.667 1.97 1.15 44.38 2.43
1891 2138 4.574892 TGTCGCAGAAATGGATGTTTCTA 58.425 39.130 1.97 0.00 44.38 2.10
1892 2139 3.411446 TGTCGCAGAAATGGATGTTTCT 58.589 40.909 0.00 0.00 46.46 2.52
1893 2140 3.829886 TGTCGCAGAAATGGATGTTTC 57.170 42.857 0.00 0.00 39.69 2.78
1894 2141 3.569701 ACTTGTCGCAGAAATGGATGTTT 59.430 39.130 0.00 0.00 39.69 2.83
1895 2142 3.149196 ACTTGTCGCAGAAATGGATGTT 58.851 40.909 0.00 0.00 39.69 2.71
1896 2143 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
1897 2144 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
1898 2145 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
1899 2146 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
1900 2147 4.155826 TGGAATTACTTGTCGCAGAAATGG 59.844 41.667 0.00 0.00 39.69 3.16
1901 2148 5.295431 TGGAATTACTTGTCGCAGAAATG 57.705 39.130 0.00 0.00 39.69 2.32
1902 2149 5.957842 TTGGAATTACTTGTCGCAGAAAT 57.042 34.783 0.00 0.00 39.69 2.17
1903 2150 5.066634 TGTTTGGAATTACTTGTCGCAGAAA 59.933 36.000 0.00 0.00 39.69 2.52
1904 2151 4.576873 TGTTTGGAATTACTTGTCGCAGAA 59.423 37.500 0.00 0.00 39.69 3.02
1905 2152 4.130857 TGTTTGGAATTACTTGTCGCAGA 58.869 39.130 0.00 0.00 0.00 4.26
1906 2153 4.213270 TCTGTTTGGAATTACTTGTCGCAG 59.787 41.667 0.00 0.00 0.00 5.18
1907 2154 4.130857 TCTGTTTGGAATTACTTGTCGCA 58.869 39.130 0.00 0.00 0.00 5.10
1908 2155 4.378459 CCTCTGTTTGGAATTACTTGTCGC 60.378 45.833 0.00 0.00 0.00 5.19
1909 2156 4.154195 CCCTCTGTTTGGAATTACTTGTCG 59.846 45.833 0.00 0.00 0.00 4.35
1910 2157 5.313712 TCCCTCTGTTTGGAATTACTTGTC 58.686 41.667 0.00 0.00 0.00 3.18
1911 2158 5.163088 ACTCCCTCTGTTTGGAATTACTTGT 60.163 40.000 0.00 0.00 0.00 3.16
1912 2159 5.316987 ACTCCCTCTGTTTGGAATTACTTG 58.683 41.667 0.00 0.00 0.00 3.16
1913 2160 5.584551 ACTCCCTCTGTTTGGAATTACTT 57.415 39.130 0.00 0.00 0.00 2.24
1914 2161 5.546499 TGTACTCCCTCTGTTTGGAATTACT 59.454 40.000 0.00 0.00 0.00 2.24
1915 2162 5.801380 TGTACTCCCTCTGTTTGGAATTAC 58.199 41.667 0.00 0.00 0.00 1.89
1916 2163 6.636454 ATGTACTCCCTCTGTTTGGAATTA 57.364 37.500 0.00 0.00 0.00 1.40
1917 2164 4.993705 TGTACTCCCTCTGTTTGGAATT 57.006 40.909 0.00 0.00 0.00 2.17
1918 2165 6.617371 AGATATGTACTCCCTCTGTTTGGAAT 59.383 38.462 0.00 0.00 0.00 3.01
1919 2166 5.964477 AGATATGTACTCCCTCTGTTTGGAA 59.036 40.000 0.00 0.00 0.00 3.53
1920 2167 5.529289 AGATATGTACTCCCTCTGTTTGGA 58.471 41.667 0.00 0.00 0.00 3.53
1921 2168 5.878406 AGATATGTACTCCCTCTGTTTGG 57.122 43.478 0.00 0.00 0.00 3.28
1922 2169 9.319143 CTTTTAGATATGTACTCCCTCTGTTTG 57.681 37.037 0.00 0.00 0.00 2.93
1923 2170 9.268282 TCTTTTAGATATGTACTCCCTCTGTTT 57.732 33.333 0.00 0.00 0.00 2.83
1924 2171 8.840200 TCTTTTAGATATGTACTCCCTCTGTT 57.160 34.615 0.00 0.00 0.00 3.16
1925 2172 8.840200 TTCTTTTAGATATGTACTCCCTCTGT 57.160 34.615 0.00 0.00 0.00 3.41
1971 2218 3.110293 ACAAGGGGGCTTAATAAACCC 57.890 47.619 2.88 2.88 43.44 4.11
2121 2368 8.086522 GTGTCACGTGGTACCATCTATATAAAT 58.913 37.037 19.72 0.00 0.00 1.40
2122 2369 7.068470 TGTGTCACGTGGTACCATCTATATAAA 59.932 37.037 19.72 0.00 0.00 1.40
2123 2370 6.546772 TGTGTCACGTGGTACCATCTATATAA 59.453 38.462 19.72 0.00 0.00 0.98
2124 2371 6.063404 TGTGTCACGTGGTACCATCTATATA 58.937 40.000 19.72 0.00 0.00 0.86
2125 2372 4.891168 TGTGTCACGTGGTACCATCTATAT 59.109 41.667 19.72 0.00 0.00 0.86
2126 2373 4.271661 TGTGTCACGTGGTACCATCTATA 58.728 43.478 19.72 0.09 0.00 1.31
2127 2374 3.093814 TGTGTCACGTGGTACCATCTAT 58.906 45.455 19.72 0.80 0.00 1.98
2128 2375 2.516906 TGTGTCACGTGGTACCATCTA 58.483 47.619 19.72 1.25 0.00 1.98
2129 2376 1.334160 TGTGTCACGTGGTACCATCT 58.666 50.000 19.72 2.84 0.00 2.90
2130 2377 1.999735 CATGTGTCACGTGGTACCATC 59.000 52.381 19.72 10.92 31.65 3.51
2131 2378 1.346395 ACATGTGTCACGTGGTACCAT 59.654 47.619 25.31 10.02 39.36 3.55
2132 2379 0.753867 ACATGTGTCACGTGGTACCA 59.246 50.000 25.31 11.60 39.36 3.25
2133 2380 1.144969 CACATGTGTCACGTGGTACC 58.855 55.000 25.31 4.43 39.36 3.34
2134 2381 1.144969 CCACATGTGTCACGTGGTAC 58.855 55.000 25.31 15.07 44.27 3.34
2135 2382 3.597550 CCACATGTGTCACGTGGTA 57.402 52.632 25.31 1.73 44.27 3.25
2136 2383 4.454948 CCACATGTGTCACGTGGT 57.545 55.556 25.31 11.12 44.27 4.16
2138 2385 1.194547 GCTTACCACATGTGTCACGTG 59.805 52.381 23.79 21.25 40.80 4.49
2139 2386 1.202592 TGCTTACCACATGTGTCACGT 60.203 47.619 23.79 16.29 0.00 4.49
2140 2387 1.507562 TGCTTACCACATGTGTCACG 58.492 50.000 23.79 11.29 0.00 4.35
2141 2388 4.023279 TGAATTGCTTACCACATGTGTCAC 60.023 41.667 23.79 9.40 0.00 3.67
2142 2389 4.140536 TGAATTGCTTACCACATGTGTCA 58.859 39.130 23.79 14.25 0.00 3.58
2143 2390 4.764679 TGAATTGCTTACCACATGTGTC 57.235 40.909 23.79 11.92 0.00 3.67
2144 2391 5.528043 TTTGAATTGCTTACCACATGTGT 57.472 34.783 23.79 14.29 0.00 3.72
2145 2392 6.841443 TTTTTGAATTGCTTACCACATGTG 57.159 33.333 19.31 19.31 0.00 3.21
2251 2705 0.991920 TTGCCTCCTTCTTCCGGATT 59.008 50.000 4.15 0.00 0.00 3.01
2296 2750 1.868713 TACCCACCCTCGAGCAAATA 58.131 50.000 6.99 0.00 0.00 1.40
2304 2758 0.392461 CAACCACATACCCACCCTCG 60.392 60.000 0.00 0.00 0.00 4.63
2314 2768 5.019470 TGGATTGCCATAAACAACCACATA 58.981 37.500 0.00 0.00 39.92 2.29
2331 2785 0.257039 CACCCCCTTCCTCTGGATTG 59.743 60.000 0.00 0.00 0.00 2.67
2332 2786 0.921256 CCACCCCCTTCCTCTGGATT 60.921 60.000 0.00 0.00 0.00 3.01
2369 2823 1.827969 CCTTCTCCACTACTCCCACAG 59.172 57.143 0.00 0.00 0.00 3.66
2370 2824 1.149288 ACCTTCTCCACTACTCCCACA 59.851 52.381 0.00 0.00 0.00 4.17
2381 2835 1.340017 GGTGCAATGCTACCTTCTCCA 60.340 52.381 16.02 0.00 34.11 3.86
2384 2838 0.698238 TGGGTGCAATGCTACCTTCT 59.302 50.000 20.32 0.00 37.15 2.85
2387 2841 0.464373 CGATGGGTGCAATGCTACCT 60.464 55.000 20.32 7.31 37.15 3.08
2407 2861 0.108396 GTTGCAAATGCCCCAACCTT 59.892 50.000 0.00 0.00 41.18 3.50
2446 2900 7.648908 TGCTTCACAAGAATAACTGATTGTTTG 59.351 33.333 0.00 0.00 39.89 2.93
2447 2901 7.649306 GTGCTTCACAAGAATAACTGATTGTTT 59.351 33.333 0.00 0.00 35.93 2.83
2503 2957 1.634973 TCAGCCCATCATCCACAGAAA 59.365 47.619 0.00 0.00 0.00 2.52
2506 2960 2.133281 TTTCAGCCCATCATCCACAG 57.867 50.000 0.00 0.00 0.00 3.66
2513 2967 1.272092 CCTCCACTTTTCAGCCCATCA 60.272 52.381 0.00 0.00 0.00 3.07
2537 2991 7.333672 AGGTTTATAAGTTTCTCCATCAACGTC 59.666 37.037 0.00 0.00 0.00 4.34
2588 3042 9.590451 ACATTGCCACTATTTTTATTTCATGAG 57.410 29.630 0.00 0.00 0.00 2.90
2589 3043 9.585099 GACATTGCCACTATTTTTATTTCATGA 57.415 29.630 0.00 0.00 0.00 3.07
2591 3045 9.941325 TTGACATTGCCACTATTTTTATTTCAT 57.059 25.926 0.00 0.00 0.00 2.57
2622 3076 3.706600 TCACAATAACCCCTACACCAC 57.293 47.619 0.00 0.00 0.00 4.16
2623 3077 4.043561 ACATTCACAATAACCCCTACACCA 59.956 41.667 0.00 0.00 0.00 4.17
2646 3100 2.372504 TCCATAAAACCACCTTCGTCCA 59.627 45.455 0.00 0.00 0.00 4.02
2663 3118 4.403432 CCAGACTTGGCATTAATGTTCCAT 59.597 41.667 16.61 3.12 37.73 3.41
2688 3143 1.150827 GACTTTGCCAAAGCCATTGC 58.849 50.000 16.89 0.00 42.27 3.56
2768 3223 0.393077 CCCTCCAATACGCCGAAGAT 59.607 55.000 0.00 0.00 0.00 2.40
2788 3243 2.034878 GACCCTAACTTACCCCTACCG 58.965 57.143 0.00 0.00 0.00 4.02
2862 3321 5.608449 TCTCCATCATCATTGCAGACTTAG 58.392 41.667 0.00 0.00 0.00 2.18
2874 3333 1.144298 CCCCTTGCATCTCCATCATCA 59.856 52.381 0.00 0.00 0.00 3.07
2996 6996 5.473039 CCTCAAATTCTTTTCACATGACCC 58.527 41.667 0.00 0.00 0.00 4.46
3122 7125 8.688151 ACATCCTAATATTAGCTAATCGACCTC 58.312 37.037 22.09 0.00 0.00 3.85
3181 7184 6.139795 GCTACGCAACTAATAACTACTACACG 59.860 42.308 0.00 0.00 0.00 4.49
3270 7273 2.909662 CTCATTAATCCCTCCCTCCCTC 59.090 54.545 0.00 0.00 0.00 4.30
3273 7276 5.788014 ACTTATCTCATTAATCCCTCCCTCC 59.212 44.000 0.00 0.00 0.00 4.30
3381 7387 7.803279 AGCTTTAATTCTAACCCTTTATCGG 57.197 36.000 0.00 0.00 0.00 4.18
3532 7539 5.864474 CGTTGGTATGGATGAATAGAGTAGC 59.136 44.000 0.00 0.00 0.00 3.58
3542 7549 7.689446 TTTGAATTTACGTTGGTATGGATGA 57.311 32.000 0.00 0.00 0.00 2.92
3550 7557 8.626526 AGTAGTCAAATTTGAATTTACGTTGGT 58.373 29.630 24.43 8.38 39.21 3.67
3650 7657 9.994432 CACATCAGTCCATTTTAACTCTAAATC 57.006 33.333 0.00 0.00 0.00 2.17
3668 7675 8.450578 TCTTAAAGTCAAACAATCACATCAGT 57.549 30.769 0.00 0.00 0.00 3.41
3859 7868 1.362355 CCCCGTTGTTCCAAAGTGC 59.638 57.895 0.00 0.00 0.00 4.40
3865 7874 1.065647 TGATAACCCCCGTTGTTCCA 58.934 50.000 0.00 0.00 33.17 3.53
3948 7959 6.385649 AACACGTGTTCAAAACCAGATTAT 57.614 33.333 27.70 0.00 31.64 1.28
4044 8065 7.437862 CCTGCACATGTACAATTTTTAGTTGTT 59.562 33.333 0.00 0.00 40.13 2.83
4796 8827 5.589367 AGCACAAAGTCATATATGGGGAT 57.411 39.130 12.78 0.00 0.00 3.85
4812 8843 4.268939 GCGCTGGCACAAGCACAA 62.269 61.111 0.00 0.00 44.61 3.33
4846 8877 1.114722 ACGTCAACCCCGACAAGGTA 61.115 55.000 0.00 0.00 36.27 3.08
5071 9102 4.246458 GCATCTGGTCGTAAAAGAACTCT 58.754 43.478 0.00 0.00 0.00 3.24
5080 9111 0.249120 CACTGGGCATCTGGTCGTAA 59.751 55.000 0.00 0.00 0.00 3.18
5406 9437 7.156673 AGTTTCAGTACGTAACAACATGGTAT 58.843 34.615 0.00 0.00 0.00 2.73
5497 9528 6.894339 ACTTTGTTCAGGGTAGTAAAATGG 57.106 37.500 0.00 0.00 0.00 3.16
5806 9837 1.449778 GTCCGTGCCCTTAGCTTCC 60.450 63.158 0.00 0.00 44.23 3.46
5808 9839 2.264794 CGTCCGTGCCCTTAGCTT 59.735 61.111 0.00 0.00 44.23 3.74
6268 10330 2.124320 CCCAAGGCACATACCCCG 60.124 66.667 0.00 0.00 0.00 5.73
6288 10350 5.766150 TCAAAGGTTGTATTTGACCAGTG 57.234 39.130 0.00 0.00 40.72 3.66
6323 10385 3.173953 ACAAAAATCATCCCTGGCTGA 57.826 42.857 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.