Multiple sequence alignment - TraesCS2A01G571500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G571500 chr2A 100.000 3026 0 0 1 3026 768307808 768304783 0.000000e+00 5589
1 TraesCS2A01G571500 chr2A 93.142 1531 79 9 725 2239 768429068 768430588 0.000000e+00 2222
2 TraesCS2A01G571500 chr2A 79.641 948 161 24 1104 2027 768257036 768257975 0.000000e+00 652
3 TraesCS2A01G571500 chr2A 78.022 910 188 8 1106 2006 768266940 768266034 2.040000e-156 562
4 TraesCS2A01G571500 chr2A 90.052 191 19 0 1129 1319 125618838 125619028 6.480000e-62 248
5 TraesCS2A01G571500 chr2A 81.046 306 46 10 2664 2962 6185056 6185356 1.810000e-57 233
6 TraesCS2A01G571500 chr2A 80.719 306 47 10 2664 2962 6081264 6081564 8.440000e-56 228
7 TraesCS2A01G571500 chr2A 80.719 306 47 10 2664 2962 6134009 6134309 8.440000e-56 228
8 TraesCS2A01G571500 chr2A 76.499 417 72 18 2557 2961 766963017 766963419 1.420000e-48 204
9 TraesCS2A01G571500 chr2A 82.979 235 20 11 1 215 696281231 696280997 8.560000e-46 195
10 TraesCS2A01G571500 chr2A 77.429 319 52 18 1108 1416 769145011 769145319 4.010000e-39 172
11 TraesCS2A01G571500 chr2A 94.495 109 6 0 919 1027 125618716 125618824 5.190000e-38 169
12 TraesCS2A01G571500 chr2B 89.776 2680 187 47 306 2943 793455663 793458297 0.000000e+00 3350
13 TraesCS2A01G571500 chr2B 92.313 1548 88 16 718 2239 793447373 793445831 0.000000e+00 2170
14 TraesCS2A01G571500 chr2B 78.970 913 177 12 1106 2006 793506118 793505209 2.580000e-170 608
15 TraesCS2A01G571500 chr2B 78.118 946 176 26 1104 2027 793518120 793517184 3.380000e-159 571
16 TraesCS2A01G571500 chr2B 82.197 264 23 13 215 472 793448323 793448078 3.950000e-49 206
17 TraesCS2A01G571500 chr2B 82.609 253 20 15 1 232 417776698 417776449 5.120000e-48 202
18 TraesCS2A01G571500 chr2B 89.899 99 10 0 2927 3025 793458315 793458413 8.810000e-26 128
19 TraesCS2A01G571500 chr2D 92.416 1569 87 16 814 2369 643468829 643467280 0.000000e+00 2209
20 TraesCS2A01G571500 chr2D 93.317 1257 69 6 814 2070 643640184 643641425 0.000000e+00 1842
21 TraesCS2A01G571500 chr2D 79.932 877 151 21 1104 1964 643330401 643331268 3.310000e-174 621
22 TraesCS2A01G571500 chr2D 83.636 220 21 10 215 429 643638962 643639171 3.080000e-45 193
23 TraesCS2A01G571500 chr2D 88.889 135 6 6 2109 2239 643641403 643641532 1.120000e-34 158
24 TraesCS2A01G571500 chr2D 79.325 237 38 9 2636 2867 539019783 539020013 4.040000e-34 156
25 TraesCS2A01G571500 chr3D 92.352 523 36 2 925 1447 306087639 306087121 0.000000e+00 741
26 TraesCS2A01G571500 chr3D 77.725 211 34 10 2653 2857 388330328 388330125 1.910000e-22 117
27 TraesCS2A01G571500 chr1D 79.459 370 56 12 2603 2965 108102177 108102533 8.380000e-61 244
28 TraesCS2A01G571500 chr1D 90.000 100 7 2 1 98 33698212 33698310 3.170000e-25 126
29 TraesCS2A01G571500 chr7A 84.681 235 16 6 1 215 434753906 434754140 1.830000e-52 217
30 TraesCS2A01G571500 chr7A 85.398 226 14 5 9 215 490124086 490123861 1.830000e-52 217
31 TraesCS2A01G571500 chr7A 92.661 109 6 2 1 107 17351915 17351807 4.040000e-34 156
32 TraesCS2A01G571500 chr3A 76.644 441 71 19 2543 2968 66905826 66905403 6.570000e-52 215
33 TraesCS2A01G571500 chr3A 81.614 223 22 7 12 215 371622432 371622654 1.870000e-37 167
34 TraesCS2A01G571500 chr3A 85.345 116 17 0 1040 1155 88122777 88122662 1.470000e-23 121
35 TraesCS2A01G571500 chr7D 84.188 234 18 5 1 215 45402767 45403000 3.060000e-50 209
36 TraesCS2A01G571500 chr7D 82.627 236 20 7 1 215 1221314 1221079 3.980000e-44 189
37 TraesCS2A01G571500 chr6A 84.052 232 18 4 4 216 94061348 94061579 3.950000e-49 206
38 TraesCS2A01G571500 chr6A 82.128 235 22 8 1 215 54487102 54487336 1.850000e-42 183
39 TraesCS2A01G571500 chr6A 82.667 225 21 3 9 215 601135555 601135779 1.850000e-42 183
40 TraesCS2A01G571500 chr5D 83.761 234 19 10 1 215 115973342 115973109 1.420000e-48 204
41 TraesCS2A01G571500 chr5D 91.743 109 7 2 1 107 9469394 9469286 1.880000e-32 150
42 TraesCS2A01G571500 chr5D 80.088 226 26 8 10 216 205118827 205119052 1.880000e-32 150
43 TraesCS2A01G571500 chr1B 78.931 318 52 12 2558 2868 158544399 158544090 5.120000e-48 202
44 TraesCS2A01G571500 chr1A 82.906 234 20 8 1 215 543487647 543487879 3.080000e-45 193
45 TraesCS2A01G571500 chr1A 84.483 116 18 0 1040 1155 250606285 250606400 6.860000e-22 115
46 TraesCS2A01G571500 chr4B 93.578 109 7 0 919 1027 636773446 636773554 2.410000e-36 163
47 TraesCS2A01G571500 chr6B 80.769 234 17 8 1 215 49731677 49731901 1.120000e-34 158
48 TraesCS2A01G571500 chr5B 80.444 225 25 5 9 215 400519560 400519337 1.450000e-33 154
49 TraesCS2A01G571500 chr4A 79.787 188 36 2 2780 2965 29246717 29246530 5.260000e-28 135
50 TraesCS2A01G571500 chr4A 88.889 108 12 0 1040 1147 570232871 570232978 1.890000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G571500 chr2A 768304783 768307808 3025 True 5589 5589 100.0000 1 3026 1 chr2A.!!$R3 3025
1 TraesCS2A01G571500 chr2A 768429068 768430588 1520 False 2222 2222 93.1420 725 2239 1 chr2A.!!$F6 1514
2 TraesCS2A01G571500 chr2A 768257036 768257975 939 False 652 652 79.6410 1104 2027 1 chr2A.!!$F5 923
3 TraesCS2A01G571500 chr2A 768266034 768266940 906 True 562 562 78.0220 1106 2006 1 chr2A.!!$R2 900
4 TraesCS2A01G571500 chr2B 793455663 793458413 2750 False 1739 3350 89.8375 306 3025 2 chr2B.!!$F1 2719
5 TraesCS2A01G571500 chr2B 793445831 793448323 2492 True 1188 2170 87.2550 215 2239 2 chr2B.!!$R4 2024
6 TraesCS2A01G571500 chr2B 793505209 793506118 909 True 608 608 78.9700 1106 2006 1 chr2B.!!$R2 900
7 TraesCS2A01G571500 chr2B 793517184 793518120 936 True 571 571 78.1180 1104 2027 1 chr2B.!!$R3 923
8 TraesCS2A01G571500 chr2D 643467280 643468829 1549 True 2209 2209 92.4160 814 2369 1 chr2D.!!$R1 1555
9 TraesCS2A01G571500 chr2D 643638962 643641532 2570 False 731 1842 88.6140 215 2239 3 chr2D.!!$F3 2024
10 TraesCS2A01G571500 chr2D 643330401 643331268 867 False 621 621 79.9320 1104 1964 1 chr2D.!!$F2 860
11 TraesCS2A01G571500 chr3D 306087121 306087639 518 True 741 741 92.3520 925 1447 1 chr3D.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 648 0.107081 CACCCCACGTTTCAGTACCA 59.893 55.0 0.0 0.0 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 3151 0.034616 AGCAAGCACTCAGTGACTCC 59.965 55.0 9.7 1.01 35.23 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.915869 GATGGGAGCCCGGCTTTA 59.084 61.111 14.70 3.44 39.88 1.85
18 19 1.227973 GATGGGAGCCCGGCTTTAG 60.228 63.158 14.70 0.00 39.88 1.85
19 20 2.682582 GATGGGAGCCCGGCTTTAGG 62.683 65.000 14.70 0.00 39.88 2.69
20 21 3.408853 GGGAGCCCGGCTTTAGGT 61.409 66.667 14.70 0.00 39.88 3.08
21 22 2.124695 GGAGCCCGGCTTTAGGTG 60.125 66.667 14.70 0.00 39.88 4.00
22 23 2.669240 GAGCCCGGCTTTAGGTGT 59.331 61.111 14.70 0.00 39.88 4.16
23 24 1.002502 GAGCCCGGCTTTAGGTGTT 60.003 57.895 14.70 0.00 39.88 3.32
24 25 0.251073 GAGCCCGGCTTTAGGTGTTA 59.749 55.000 14.70 0.00 39.88 2.41
25 26 0.252197 AGCCCGGCTTTAGGTGTTAG 59.748 55.000 5.94 0.00 33.89 2.34
26 27 0.251073 GCCCGGCTTTAGGTGTTAGA 59.749 55.000 0.71 0.00 0.00 2.10
27 28 2.010544 GCCCGGCTTTAGGTGTTAGAC 61.011 57.143 0.71 0.00 0.00 2.59
28 29 1.553704 CCCGGCTTTAGGTGTTAGACT 59.446 52.381 0.00 0.00 0.00 3.24
29 30 2.027469 CCCGGCTTTAGGTGTTAGACTT 60.027 50.000 0.00 0.00 0.00 3.01
30 31 3.558533 CCCGGCTTTAGGTGTTAGACTTT 60.559 47.826 0.00 0.00 0.00 2.66
31 32 3.435671 CCGGCTTTAGGTGTTAGACTTTG 59.564 47.826 0.00 0.00 0.00 2.77
32 33 3.435671 CGGCTTTAGGTGTTAGACTTTGG 59.564 47.826 0.00 0.00 0.00 3.28
33 34 4.395625 GGCTTTAGGTGTTAGACTTTGGT 58.604 43.478 0.00 0.00 0.00 3.67
34 35 4.215613 GGCTTTAGGTGTTAGACTTTGGTG 59.784 45.833 0.00 0.00 0.00 4.17
35 36 4.320275 GCTTTAGGTGTTAGACTTTGGTGC 60.320 45.833 0.00 0.00 0.00 5.01
36 37 1.878953 AGGTGTTAGACTTTGGTGCG 58.121 50.000 0.00 0.00 0.00 5.34
37 38 1.414919 AGGTGTTAGACTTTGGTGCGA 59.585 47.619 0.00 0.00 0.00 5.10
38 39 2.038557 AGGTGTTAGACTTTGGTGCGAT 59.961 45.455 0.00 0.00 0.00 4.58
39 40 2.159627 GGTGTTAGACTTTGGTGCGATG 59.840 50.000 0.00 0.00 0.00 3.84
40 41 2.806244 GTGTTAGACTTTGGTGCGATGT 59.194 45.455 0.00 0.00 0.00 3.06
41 42 3.064207 TGTTAGACTTTGGTGCGATGTC 58.936 45.455 0.00 0.00 0.00 3.06
42 43 3.244078 TGTTAGACTTTGGTGCGATGTCT 60.244 43.478 0.00 0.00 40.52 3.41
43 44 4.021807 TGTTAGACTTTGGTGCGATGTCTA 60.022 41.667 0.00 0.00 38.67 2.59
44 45 3.895232 AGACTTTGGTGCGATGTCTAT 57.105 42.857 0.00 0.00 36.39 1.98
45 46 4.207891 AGACTTTGGTGCGATGTCTATT 57.792 40.909 0.00 0.00 36.39 1.73
46 47 4.579869 AGACTTTGGTGCGATGTCTATTT 58.420 39.130 0.00 0.00 36.39 1.40
47 48 4.393062 AGACTTTGGTGCGATGTCTATTTG 59.607 41.667 0.00 0.00 36.39 2.32
48 49 3.440173 ACTTTGGTGCGATGTCTATTTGG 59.560 43.478 0.00 0.00 0.00 3.28
49 50 2.779755 TGGTGCGATGTCTATTTGGT 57.220 45.000 0.00 0.00 0.00 3.67
50 51 3.897141 TGGTGCGATGTCTATTTGGTA 57.103 42.857 0.00 0.00 0.00 3.25
51 52 4.415881 TGGTGCGATGTCTATTTGGTAT 57.584 40.909 0.00 0.00 0.00 2.73
52 53 4.776349 TGGTGCGATGTCTATTTGGTATT 58.224 39.130 0.00 0.00 0.00 1.89
53 54 5.919755 TGGTGCGATGTCTATTTGGTATTA 58.080 37.500 0.00 0.00 0.00 0.98
54 55 5.989168 TGGTGCGATGTCTATTTGGTATTAG 59.011 40.000 0.00 0.00 0.00 1.73
55 56 5.408604 GGTGCGATGTCTATTTGGTATTAGG 59.591 44.000 0.00 0.00 0.00 2.69
56 57 4.994852 TGCGATGTCTATTTGGTATTAGGC 59.005 41.667 0.00 0.00 0.00 3.93
57 58 4.392138 GCGATGTCTATTTGGTATTAGGCC 59.608 45.833 0.00 0.00 0.00 5.19
58 59 4.935808 CGATGTCTATTTGGTATTAGGCCC 59.064 45.833 0.00 0.00 0.00 5.80
59 60 4.345859 TGTCTATTTGGTATTAGGCCCG 57.654 45.455 0.00 0.00 0.00 6.13
60 61 3.968649 TGTCTATTTGGTATTAGGCCCGA 59.031 43.478 0.00 0.00 0.00 5.14
61 62 4.409574 TGTCTATTTGGTATTAGGCCCGAA 59.590 41.667 0.00 0.00 0.00 4.30
62 63 4.753610 GTCTATTTGGTATTAGGCCCGAAC 59.246 45.833 0.00 0.00 0.00 3.95
63 64 3.655615 ATTTGGTATTAGGCCCGAACA 57.344 42.857 0.00 0.00 0.00 3.18
64 65 3.655615 TTTGGTATTAGGCCCGAACAT 57.344 42.857 0.00 0.00 0.00 2.71
65 66 3.655615 TTGGTATTAGGCCCGAACATT 57.344 42.857 0.00 0.00 0.00 2.71
66 67 4.774660 TTGGTATTAGGCCCGAACATTA 57.225 40.909 0.00 0.00 0.00 1.90
67 68 4.345859 TGGTATTAGGCCCGAACATTAG 57.654 45.455 0.00 0.00 0.00 1.73
68 69 3.968649 TGGTATTAGGCCCGAACATTAGA 59.031 43.478 0.00 0.00 0.00 2.10
69 70 4.202284 TGGTATTAGGCCCGAACATTAGAC 60.202 45.833 0.00 0.00 0.00 2.59
70 71 4.202284 GGTATTAGGCCCGAACATTAGACA 60.202 45.833 0.00 0.00 0.00 3.41
71 72 2.973694 TAGGCCCGAACATTAGACAC 57.026 50.000 0.00 0.00 0.00 3.67
72 73 0.108329 AGGCCCGAACATTAGACACG 60.108 55.000 0.00 0.00 0.00 4.49
73 74 1.702491 GGCCCGAACATTAGACACGC 61.702 60.000 0.00 0.00 0.00 5.34
74 75 1.702491 GCCCGAACATTAGACACGCC 61.702 60.000 0.00 0.00 0.00 5.68
75 76 0.108329 CCCGAACATTAGACACGCCT 60.108 55.000 0.00 0.00 0.00 5.52
76 77 1.674817 CCCGAACATTAGACACGCCTT 60.675 52.381 0.00 0.00 0.00 4.35
77 78 1.659098 CCGAACATTAGACACGCCTTC 59.341 52.381 0.00 0.00 0.00 3.46
78 79 2.333926 CGAACATTAGACACGCCTTCA 58.666 47.619 0.00 0.00 0.00 3.02
79 80 2.930040 CGAACATTAGACACGCCTTCAT 59.070 45.455 0.00 0.00 0.00 2.57
80 81 3.000322 CGAACATTAGACACGCCTTCATC 60.000 47.826 0.00 0.00 0.00 2.92
81 82 3.610040 ACATTAGACACGCCTTCATCA 57.390 42.857 0.00 0.00 0.00 3.07
82 83 3.937814 ACATTAGACACGCCTTCATCAA 58.062 40.909 0.00 0.00 0.00 2.57
83 84 3.935203 ACATTAGACACGCCTTCATCAAG 59.065 43.478 0.00 0.00 0.00 3.02
95 96 5.736951 CCTTCATCAAGGGATAGGAGTAG 57.263 47.826 0.00 0.00 45.27 2.57
96 97 4.020662 CCTTCATCAAGGGATAGGAGTAGC 60.021 50.000 0.00 0.00 45.27 3.58
97 98 4.199002 TCATCAAGGGATAGGAGTAGCA 57.801 45.455 0.00 0.00 30.87 3.49
98 99 4.556697 TCATCAAGGGATAGGAGTAGCAA 58.443 43.478 0.00 0.00 30.87 3.91
99 100 4.345257 TCATCAAGGGATAGGAGTAGCAAC 59.655 45.833 0.00 0.00 30.87 4.17
100 101 2.693591 TCAAGGGATAGGAGTAGCAACG 59.306 50.000 0.00 0.00 0.00 4.10
101 102 1.705873 AGGGATAGGAGTAGCAACGG 58.294 55.000 0.00 0.00 0.00 4.44
102 103 1.063114 AGGGATAGGAGTAGCAACGGT 60.063 52.381 0.00 0.00 0.00 4.83
103 104 1.068741 GGGATAGGAGTAGCAACGGTG 59.931 57.143 0.00 0.00 0.00 4.94
104 105 1.755380 GGATAGGAGTAGCAACGGTGT 59.245 52.381 0.66 0.00 0.00 4.16
105 106 2.167900 GGATAGGAGTAGCAACGGTGTT 59.832 50.000 0.66 0.00 0.00 3.32
106 107 2.736144 TAGGAGTAGCAACGGTGTTG 57.264 50.000 0.66 5.34 0.00 3.33
107 108 1.045407 AGGAGTAGCAACGGTGTTGA 58.955 50.000 13.48 0.00 0.00 3.18
108 109 1.414919 AGGAGTAGCAACGGTGTTGAA 59.585 47.619 13.48 0.00 0.00 2.69
109 110 1.529865 GGAGTAGCAACGGTGTTGAAC 59.470 52.381 13.48 9.88 0.00 3.18
110 111 2.480845 GAGTAGCAACGGTGTTGAACT 58.519 47.619 13.48 13.87 0.00 3.01
111 112 2.870411 GAGTAGCAACGGTGTTGAACTT 59.130 45.455 13.48 2.05 0.00 2.66
112 113 4.053295 GAGTAGCAACGGTGTTGAACTTA 58.947 43.478 13.48 0.00 0.00 2.24
113 114 4.638304 AGTAGCAACGGTGTTGAACTTAT 58.362 39.130 13.48 0.00 0.00 1.73
114 115 5.061179 AGTAGCAACGGTGTTGAACTTATT 58.939 37.500 13.48 0.00 0.00 1.40
115 116 4.223320 AGCAACGGTGTTGAACTTATTG 57.777 40.909 13.48 0.00 0.00 1.90
116 117 3.880490 AGCAACGGTGTTGAACTTATTGA 59.120 39.130 13.48 0.00 0.00 2.57
117 118 4.518970 AGCAACGGTGTTGAACTTATTGAT 59.481 37.500 13.48 0.00 0.00 2.57
118 119 4.616802 GCAACGGTGTTGAACTTATTGATG 59.383 41.667 13.48 0.00 0.00 3.07
119 120 5.757886 CAACGGTGTTGAACTTATTGATGT 58.242 37.500 3.65 0.00 0.00 3.06
120 121 6.566942 GCAACGGTGTTGAACTTATTGATGTA 60.567 38.462 13.48 0.00 0.00 2.29
121 122 7.526608 CAACGGTGTTGAACTTATTGATGTAT 58.473 34.615 3.65 0.00 0.00 2.29
122 123 7.303634 ACGGTGTTGAACTTATTGATGTATC 57.696 36.000 0.00 0.00 0.00 2.24
123 124 6.035650 ACGGTGTTGAACTTATTGATGTATCG 59.964 38.462 0.00 0.00 0.00 2.92
124 125 6.035650 CGGTGTTGAACTTATTGATGTATCGT 59.964 38.462 0.00 0.00 0.00 3.73
125 126 7.399523 GGTGTTGAACTTATTGATGTATCGTC 58.600 38.462 0.00 0.00 0.00 4.20
126 127 7.277981 GGTGTTGAACTTATTGATGTATCGTCT 59.722 37.037 0.00 0.00 0.00 4.18
127 128 8.656849 GTGTTGAACTTATTGATGTATCGTCTT 58.343 33.333 0.00 0.00 0.00 3.01
128 129 8.655970 TGTTGAACTTATTGATGTATCGTCTTG 58.344 33.333 0.00 0.00 0.00 3.02
129 130 8.656849 GTTGAACTTATTGATGTATCGTCTTGT 58.343 33.333 0.00 0.00 0.00 3.16
130 131 9.863845 TTGAACTTATTGATGTATCGTCTTGTA 57.136 29.630 0.00 0.00 0.00 2.41
133 134 8.818141 ACTTATTGATGTATCGTCTTGTATGG 57.182 34.615 0.00 0.00 0.00 2.74
134 135 8.421784 ACTTATTGATGTATCGTCTTGTATGGT 58.578 33.333 0.00 0.00 0.00 3.55
135 136 8.812147 TTATTGATGTATCGTCTTGTATGGTC 57.188 34.615 0.00 0.00 0.00 4.02
136 137 6.465439 TTGATGTATCGTCTTGTATGGTCT 57.535 37.500 0.00 0.00 0.00 3.85
137 138 6.465439 TGATGTATCGTCTTGTATGGTCTT 57.535 37.500 0.00 0.00 0.00 3.01
138 139 6.873997 TGATGTATCGTCTTGTATGGTCTTT 58.126 36.000 0.00 0.00 0.00 2.52
139 140 8.002984 TGATGTATCGTCTTGTATGGTCTTTA 57.997 34.615 0.00 0.00 0.00 1.85
140 141 8.638873 TGATGTATCGTCTTGTATGGTCTTTAT 58.361 33.333 0.00 0.00 0.00 1.40
141 142 8.818141 ATGTATCGTCTTGTATGGTCTTTATG 57.182 34.615 0.00 0.00 0.00 1.90
142 143 8.002984 TGTATCGTCTTGTATGGTCTTTATGA 57.997 34.615 0.00 0.00 0.00 2.15
143 144 8.471609 TGTATCGTCTTGTATGGTCTTTATGAA 58.528 33.333 0.00 0.00 0.00 2.57
144 145 9.477484 GTATCGTCTTGTATGGTCTTTATGAAT 57.523 33.333 0.00 0.00 0.00 2.57
173 174 6.754702 ATAATATGACTGCATGCTTCATCC 57.245 37.500 28.10 10.88 35.94 3.51
174 175 2.430248 ATGACTGCATGCTTCATCCA 57.570 45.000 22.46 11.90 32.31 3.41
175 176 1.746470 TGACTGCATGCTTCATCCAG 58.254 50.000 20.33 8.34 35.90 3.86
176 177 1.279846 TGACTGCATGCTTCATCCAGA 59.720 47.619 20.33 0.00 31.82 3.86
177 178 2.092592 TGACTGCATGCTTCATCCAGAT 60.093 45.455 20.33 0.00 31.82 2.90
178 179 2.290916 GACTGCATGCTTCATCCAGATG 59.709 50.000 20.33 0.98 31.82 2.90
179 180 1.001268 CTGCATGCTTCATCCAGATGC 60.001 52.381 20.33 0.00 45.07 3.91
184 185 1.595466 GCTTCATCCAGATGCAGAGG 58.405 55.000 10.88 0.00 44.45 3.69
185 186 1.134159 GCTTCATCCAGATGCAGAGGT 60.134 52.381 10.88 0.00 44.45 3.85
186 187 2.836262 CTTCATCCAGATGCAGAGGTC 58.164 52.381 1.56 0.00 34.65 3.85
187 188 0.749049 TCATCCAGATGCAGAGGTCG 59.251 55.000 2.63 0.00 38.65 4.79
188 189 0.749049 CATCCAGATGCAGAGGTCGA 59.251 55.000 0.00 0.00 31.39 4.20
189 190 1.039068 ATCCAGATGCAGAGGTCGAG 58.961 55.000 0.00 0.00 0.00 4.04
190 191 1.039785 TCCAGATGCAGAGGTCGAGG 61.040 60.000 0.00 0.00 0.00 4.63
191 192 1.440893 CAGATGCAGAGGTCGAGGG 59.559 63.158 0.00 0.00 0.00 4.30
192 193 1.000993 AGATGCAGAGGTCGAGGGT 59.999 57.895 0.00 0.00 0.00 4.34
193 194 0.259065 AGATGCAGAGGTCGAGGGTA 59.741 55.000 0.00 0.00 0.00 3.69
194 195 0.386113 GATGCAGAGGTCGAGGGTAC 59.614 60.000 0.00 0.00 0.00 3.34
195 196 0.324368 ATGCAGAGGTCGAGGGTACA 60.324 55.000 0.00 0.00 0.00 2.90
196 197 0.324368 TGCAGAGGTCGAGGGTACAT 60.324 55.000 0.00 0.00 0.00 2.29
197 198 0.824759 GCAGAGGTCGAGGGTACATT 59.175 55.000 0.00 0.00 0.00 2.71
198 199 1.202428 GCAGAGGTCGAGGGTACATTC 60.202 57.143 0.00 0.00 0.00 2.67
199 200 2.379972 CAGAGGTCGAGGGTACATTCT 58.620 52.381 0.00 0.00 0.00 2.40
200 201 2.359531 CAGAGGTCGAGGGTACATTCTC 59.640 54.545 0.00 0.00 0.00 2.87
201 202 1.682323 GAGGTCGAGGGTACATTCTCC 59.318 57.143 0.00 0.00 0.00 3.71
202 203 1.288335 AGGTCGAGGGTACATTCTCCT 59.712 52.381 0.00 0.00 0.00 3.69
203 204 2.108970 GGTCGAGGGTACATTCTCCTT 58.891 52.381 0.00 0.00 0.00 3.36
204 205 2.500504 GGTCGAGGGTACATTCTCCTTT 59.499 50.000 0.00 0.00 0.00 3.11
205 206 3.055312 GGTCGAGGGTACATTCTCCTTTT 60.055 47.826 0.00 0.00 0.00 2.27
206 207 4.182339 GTCGAGGGTACATTCTCCTTTTC 58.818 47.826 0.00 0.00 0.00 2.29
207 208 3.835978 TCGAGGGTACATTCTCCTTTTCA 59.164 43.478 0.00 0.00 0.00 2.69
208 209 4.285003 TCGAGGGTACATTCTCCTTTTCAA 59.715 41.667 0.00 0.00 0.00 2.69
209 210 5.001232 CGAGGGTACATTCTCCTTTTCAAA 58.999 41.667 0.00 0.00 0.00 2.69
210 211 5.472137 CGAGGGTACATTCTCCTTTTCAAAA 59.528 40.000 0.00 0.00 0.00 2.44
211 212 6.016610 CGAGGGTACATTCTCCTTTTCAAAAA 60.017 38.462 0.00 0.00 0.00 1.94
232 233 2.594592 GTGTGGAGCGTGCCCTTT 60.595 61.111 0.00 0.00 0.00 3.11
268 272 2.148916 TGACTGTACTTTGACCAGCG 57.851 50.000 0.00 0.00 0.00 5.18
276 280 3.671008 ACTTTGACCAGCGTACATACA 57.329 42.857 0.00 0.00 0.00 2.29
277 281 4.202245 ACTTTGACCAGCGTACATACAT 57.798 40.909 0.00 0.00 0.00 2.29
278 282 3.932710 ACTTTGACCAGCGTACATACATG 59.067 43.478 0.00 0.00 0.00 3.21
279 283 1.934589 TGACCAGCGTACATACATGC 58.065 50.000 0.00 0.00 0.00 4.06
280 284 1.217882 GACCAGCGTACATACATGCC 58.782 55.000 0.00 0.00 0.00 4.40
283 287 2.223971 ACCAGCGTACATACATGCCTAC 60.224 50.000 0.00 0.00 0.00 3.18
287 291 2.800629 GCGTACATACATGCCTACGGTT 60.801 50.000 11.83 0.00 34.97 4.44
293 297 0.623723 ACATGCCTACGGTTTGGGAT 59.376 50.000 0.00 2.08 34.68 3.85
298 302 3.764218 TGCCTACGGTTTGGGATAAAAA 58.236 40.909 0.00 0.00 0.00 1.94
299 303 3.506844 TGCCTACGGTTTGGGATAAAAAC 59.493 43.478 0.00 0.00 36.90 2.43
300 304 3.760151 GCCTACGGTTTGGGATAAAAACT 59.240 43.478 0.00 0.00 37.60 2.66
334 338 8.754230 ATATCATGTGATTTCAGTACAGATCG 57.246 34.615 0.19 0.00 36.05 3.69
448 489 2.180276 AGGTGTCGGCTCTATCAACTT 58.820 47.619 0.00 0.00 0.00 2.66
455 496 2.349886 CGGCTCTATCAACTTGTCAAGC 59.650 50.000 12.66 0.00 0.00 4.01
467 508 5.537300 ACTTGTCAAGCAGAGAGAGTTTA 57.463 39.130 12.66 0.00 0.00 2.01
471 512 6.352016 TGTCAAGCAGAGAGAGTTTAGATT 57.648 37.500 0.00 0.00 0.00 2.40
474 515 8.367911 TGTCAAGCAGAGAGAGTTTAGATTTTA 58.632 33.333 0.00 0.00 0.00 1.52
475 516 8.868916 GTCAAGCAGAGAGAGTTTAGATTTTAG 58.131 37.037 0.00 0.00 0.00 1.85
477 518 9.862371 CAAGCAGAGAGAGTTTAGATTTTAGTA 57.138 33.333 0.00 0.00 0.00 1.82
486 561 8.142551 AGAGTTTAGATTTTAGTATAGCGTGGG 58.857 37.037 0.00 0.00 0.00 4.61
494 569 6.795098 TTTAGTATAGCGTGGGCAATATTG 57.205 37.500 11.27 11.27 43.41 1.90
523 598 4.357918 AGAAGAAAGAGCTTAGCAACCA 57.642 40.909 7.07 0.00 0.00 3.67
568 643 0.947180 CGTACCACCCCACGTTTCAG 60.947 60.000 0.00 0.00 33.56 3.02
573 648 0.107081 CACCCCACGTTTCAGTACCA 59.893 55.000 0.00 0.00 0.00 3.25
578 1065 4.141869 ACCCCACGTTTCAGTACCATATAC 60.142 45.833 0.00 0.00 0.00 1.47
647 1137 3.419264 TGCACCATCGCAATATTCAAC 57.581 42.857 0.00 0.00 39.45 3.18
675 1165 0.179137 TCGACATTGCCGACAGCTAG 60.179 55.000 0.00 0.00 44.23 3.42
676 1166 1.756375 CGACATTGCCGACAGCTAGC 61.756 60.000 6.62 6.62 44.23 3.42
778 1339 6.127793 AGCAGAGCCATCTTAAAGAAATGAT 58.872 36.000 0.00 0.00 31.64 2.45
798 1368 4.165950 TGATGCCCAACTATGTCCTACATT 59.834 41.667 0.00 0.00 39.88 2.71
829 1739 9.077885 TGTCATGCTTATCTTTAACTTCCTTTT 57.922 29.630 0.00 0.00 0.00 2.27
873 1783 8.859090 CCATGCTAGGATTAATTGGACAAATAA 58.141 33.333 0.00 0.00 0.00 1.40
915 1825 5.368374 CGTTTAGCTTATAAATAACGGCCG 58.632 41.667 26.86 26.86 35.89 6.13
1051 1976 1.973812 GCACTGGTTCTGGCCTTCC 60.974 63.158 3.32 1.50 0.00 3.46
2034 2977 1.407851 GCTTCTGCCTGATGTGGATCA 60.408 52.381 0.00 0.00 37.07 2.92
2037 2980 1.012086 CTGCCTGATGTGGATCAACG 58.988 55.000 0.00 0.00 38.17 4.10
2063 3006 1.006825 CGTGTGTACGCTTGCTGCTA 61.007 55.000 8.10 0.00 44.11 3.49
2126 3084 3.753272 TGTCAGCTGTTAATTTCTGCTCC 59.247 43.478 14.67 6.60 37.85 4.70
2138 3100 2.203001 TGCTCCCGTGTGTGTGTG 60.203 61.111 0.00 0.00 0.00 3.82
2158 3124 1.576356 CCTGCTTTGGCTCGATAGTC 58.424 55.000 0.00 0.00 39.59 2.59
2159 3125 1.137872 CCTGCTTTGGCTCGATAGTCT 59.862 52.381 0.00 0.00 39.59 3.24
2160 3126 2.200067 CTGCTTTGGCTCGATAGTCTG 58.800 52.381 0.00 0.00 39.59 3.51
2161 3127 1.550524 TGCTTTGGCTCGATAGTCTGT 59.449 47.619 0.00 0.00 39.59 3.41
2162 3128 2.758423 TGCTTTGGCTCGATAGTCTGTA 59.242 45.455 0.00 0.00 39.59 2.74
2185 3151 8.687242 TGTAGTGTAATAAGAGACTTCATCAGG 58.313 37.037 0.00 0.00 0.00 3.86
2267 3240 6.788243 GGGTACCGAAATATTTGTAACCTTG 58.212 40.000 18.85 0.00 40.86 3.61
2297 3270 4.392138 GGGACCAGATTCAAACTAGTTTCG 59.608 45.833 18.00 13.25 0.00 3.46
2318 3293 8.908678 GTTTCGAACCAATTAAATTAGGACAAC 58.091 33.333 0.00 0.00 0.00 3.32
2381 3364 7.887996 TCTGAAACAATTGTTGGCATATTTC 57.112 32.000 23.93 14.89 38.44 2.17
2391 3374 1.202486 TGGCATATTTCGACGAGGTCC 60.202 52.381 0.00 0.00 0.00 4.46
2392 3375 1.129326 GCATATTTCGACGAGGTCCG 58.871 55.000 0.00 0.00 45.44 4.79
2394 3377 2.651701 CATATTTCGACGAGGTCCGAG 58.348 52.381 0.00 0.00 41.76 4.63
2400 3383 0.240411 CGACGAGGTCCGAGAGTTTT 59.760 55.000 0.00 0.00 41.76 2.43
2401 3384 1.335689 CGACGAGGTCCGAGAGTTTTT 60.336 52.381 0.00 0.00 41.76 1.94
2407 3390 4.385146 CGAGGTCCGAGAGTTTTTCTTAAC 59.615 45.833 0.00 0.00 41.76 2.01
2423 3406 9.602568 TTTTTCTTAACTGAAATTGTAAACCCC 57.397 29.630 0.00 0.00 36.07 4.95
2424 3407 6.563222 TCTTAACTGAAATTGTAAACCCCG 57.437 37.500 0.00 0.00 0.00 5.73
2425 3408 5.474189 TCTTAACTGAAATTGTAAACCCCGG 59.526 40.000 0.00 0.00 0.00 5.73
2429 3412 3.563223 TGAAATTGTAAACCCCGGTGAA 58.437 40.909 0.00 0.00 0.00 3.18
2445 3428 3.304559 CGGTGAAAAGATTACGCTCTCTG 59.695 47.826 0.00 0.00 0.00 3.35
2455 3442 1.187087 ACGCTCTCTGGGTTCTTAGG 58.813 55.000 0.00 0.00 38.82 2.69
2463 3450 6.593759 TCTCTGGGTTCTTAGGTAGATACT 57.406 41.667 0.00 0.00 31.54 2.12
2502 3493 9.895138 ACAAAAGTCCACTTAGACTAAACTTAA 57.105 29.630 9.41 0.00 46.44 1.85
2529 3520 9.820725 TTGTACTACAACTATATTAATTGCGGT 57.179 29.630 0.00 0.00 32.34 5.68
2534 3525 9.687210 CTACAACTATATTAATTGCGGTAGTGA 57.313 33.333 0.00 0.00 0.00 3.41
2550 3547 6.423001 GCGGTAGTGAAAAGAACTTCTTTAGA 59.577 38.462 15.65 4.59 45.19 2.10
2553 3550 8.766151 GGTAGTGAAAAGAACTTCTTTAGAGTG 58.234 37.037 15.65 0.00 45.19 3.51
2558 3555 6.532365 AAAGAACTTCTTTAGAGTGAAGCG 57.468 37.500 14.06 0.00 44.21 4.68
2570 3567 0.736053 GTGAAGCGTTTTGGTGACCA 59.264 50.000 0.00 0.00 0.00 4.02
2572 3569 0.310854 GAAGCGTTTTGGTGACCAGG 59.689 55.000 3.77 0.00 33.81 4.45
2573 3570 1.734388 AAGCGTTTTGGTGACCAGGC 61.734 55.000 3.77 7.63 33.81 4.85
2574 3571 2.193536 GCGTTTTGGTGACCAGGCT 61.194 57.895 3.77 0.00 33.81 4.58
2575 3572 1.949257 CGTTTTGGTGACCAGGCTC 59.051 57.895 3.77 0.00 33.81 4.70
2576 3573 1.515521 CGTTTTGGTGACCAGGCTCC 61.516 60.000 3.77 0.00 33.81 4.70
2578 3575 0.482446 TTTTGGTGACCAGGCTCCAT 59.518 50.000 3.77 0.00 33.81 3.41
2579 3576 0.251297 TTTGGTGACCAGGCTCCATG 60.251 55.000 3.77 0.00 33.81 3.66
2580 3577 2.141011 TTGGTGACCAGGCTCCATGG 62.141 60.000 4.97 4.97 43.87 3.66
2581 3578 2.300967 GGTGACCAGGCTCCATGGA 61.301 63.158 15.27 15.27 40.51 3.41
2582 3579 1.222936 GTGACCAGGCTCCATGGAG 59.777 63.158 33.73 33.73 44.56 3.86
2593 3590 3.582998 CTCCATGGAGCCCAGAATTAA 57.417 47.619 28.45 0.00 36.75 1.40
2594 3591 3.902218 CTCCATGGAGCCCAGAATTAAA 58.098 45.455 28.45 0.00 36.75 1.52
2595 3592 4.280819 CTCCATGGAGCCCAGAATTAAAA 58.719 43.478 28.45 0.00 36.75 1.52
2596 3593 4.682563 TCCATGGAGCCCAGAATTAAAAA 58.317 39.130 11.44 0.00 36.75 1.94
2624 3621 8.950208 AACAAAAATAAAACTTCCCGATTTCA 57.050 26.923 0.00 0.00 0.00 2.69
2626 3623 8.822855 ACAAAAATAAAACTTCCCGATTTCAAC 58.177 29.630 0.00 0.00 0.00 3.18
2629 3626 8.950208 AAATAAAACTTCCCGATTTCAACAAA 57.050 26.923 0.00 0.00 0.00 2.83
2630 3627 8.950208 AATAAAACTTCCCGATTTCAACAAAA 57.050 26.923 0.00 0.00 0.00 2.44
2632 3629 7.477144 AAAACTTCCCGATTTCAACAAAATC 57.523 32.000 1.32 1.32 46.58 2.17
2667 3664 8.459521 TTTTGCAATAATACAAGGATGAAACG 57.540 30.769 0.00 0.00 0.00 3.60
2679 3676 7.324935 ACAAGGATGAAACGTATATGTGTGTA 58.675 34.615 0.00 0.00 0.00 2.90
2680 3677 7.820386 ACAAGGATGAAACGTATATGTGTGTAA 59.180 33.333 0.00 0.00 0.00 2.41
2684 3681 9.997482 GGATGAAACGTATATGTGTGTAAAAAT 57.003 29.630 0.00 0.00 0.00 1.82
2714 3711 8.943925 GGATGAAAAATATGTTGAAATACGACG 58.056 33.333 0.00 0.00 35.76 5.12
2715 3712 9.697250 GATGAAAAATATGTTGAAATACGACGA 57.303 29.630 0.00 0.00 35.76 4.20
2724 3721 7.231705 TGTTGAAATACGACGAGTACAAAAA 57.768 32.000 0.00 0.00 38.29 1.94
2761 3758 6.561614 TGACTTTGAGGACGAATAGTATCAC 58.438 40.000 0.00 0.00 30.98 3.06
2763 3760 5.125097 ACTTTGAGGACGAATAGTATCACGT 59.875 40.000 12.80 12.80 41.57 4.49
2764 3761 4.547406 TGAGGACGAATAGTATCACGTG 57.453 45.455 9.94 9.94 39.04 4.49
2770 3767 5.745294 GGACGAATAGTATCACGTGCTAAAA 59.255 40.000 11.67 0.00 42.02 1.52
2773 3770 6.810182 ACGAATAGTATCACGTGCTAAAAAGT 59.190 34.615 11.67 4.18 37.58 2.66
2777 3774 5.779922 AGTATCACGTGCTAAAAAGTCTCA 58.220 37.500 11.67 0.00 0.00 3.27
2837 3836 5.468409 TCGTCATGAAAATGTACACACATGT 59.532 36.000 21.38 0.00 44.83 3.21
2838 3837 6.017523 TCGTCATGAAAATGTACACACATGTT 60.018 34.615 21.38 3.29 44.83 2.71
2848 3847 5.252547 TGTACACACATGTTCATTATGCCT 58.747 37.500 0.00 0.00 40.48 4.75
2850 3849 3.696051 ACACACATGTTCATTATGCCTCC 59.304 43.478 0.00 0.00 34.46 4.30
2857 3856 6.779049 ACATGTTCATTATGCCTCCATGTATT 59.221 34.615 13.11 0.00 39.51 1.89
2862 3861 9.236006 GTTCATTATGCCTCCATGTATTTCTAT 57.764 33.333 0.00 0.00 32.85 1.98
2870 3869 8.224025 TGCCTCCATGTATTTCTATATTTTCCA 58.776 33.333 0.00 0.00 0.00 3.53
2871 3870 8.734386 GCCTCCATGTATTTCTATATTTTCCAG 58.266 37.037 0.00 0.00 0.00 3.86
2933 3934 7.945033 TTGAAAATTGCAAATGTAGACCTTC 57.055 32.000 1.71 0.00 0.00 3.46
2954 3989 0.398696 TGTAGCTCGGCCTCCAAAAA 59.601 50.000 0.00 0.00 0.00 1.94
2962 3997 3.723260 TCGGCCTCCAAAAACAATTTTC 58.277 40.909 0.00 0.00 36.62 2.29
2992 4027 9.944663 TTCTTTAGCCATAATTAATTAAGTGCG 57.055 29.630 11.80 0.00 0.00 5.34
3000 4035 1.657822 TAATTAAGTGCGCGCATGGA 58.342 45.000 38.62 22.92 0.00 3.41
3007 4042 2.202878 GCGCGCATGGAGTCCTAA 60.203 61.111 29.10 0.00 0.00 2.69
3016 4051 3.545703 CATGGAGTCCTAACATCCCAAC 58.454 50.000 11.33 0.00 31.73 3.77
3020 4055 3.756963 GGAGTCCTAACATCCCAACAAAC 59.243 47.826 0.41 0.00 0.00 2.93
3025 4060 2.837532 AACATCCCAACAAACCATGC 57.162 45.000 0.00 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.227973 CTAAAGCCGGGCTCCCATC 60.228 63.158 24.08 0.00 38.25 3.51
1 2 2.757124 CCTAAAGCCGGGCTCCCAT 61.757 63.158 24.08 11.57 38.25 4.00
4 5 2.124695 CACCTAAAGCCGGGCTCC 60.125 66.667 24.08 0.00 38.25 4.70
7 8 0.251073 TCTAACACCTAAAGCCGGGC 59.749 55.000 12.11 12.11 0.00 6.13
8 9 1.553704 AGTCTAACACCTAAAGCCGGG 59.446 52.381 2.18 0.00 0.00 5.73
9 10 3.329929 AAGTCTAACACCTAAAGCCGG 57.670 47.619 0.00 0.00 0.00 6.13
10 11 3.435671 CCAAAGTCTAACACCTAAAGCCG 59.564 47.826 0.00 0.00 0.00 5.52
11 12 4.215613 CACCAAAGTCTAACACCTAAAGCC 59.784 45.833 0.00 0.00 0.00 4.35
12 13 4.320275 GCACCAAAGTCTAACACCTAAAGC 60.320 45.833 0.00 0.00 0.00 3.51
13 14 4.084013 CGCACCAAAGTCTAACACCTAAAG 60.084 45.833 0.00 0.00 0.00 1.85
14 15 3.810941 CGCACCAAAGTCTAACACCTAAA 59.189 43.478 0.00 0.00 0.00 1.85
15 16 3.069872 TCGCACCAAAGTCTAACACCTAA 59.930 43.478 0.00 0.00 0.00 2.69
16 17 2.629137 TCGCACCAAAGTCTAACACCTA 59.371 45.455 0.00 0.00 0.00 3.08
17 18 1.414919 TCGCACCAAAGTCTAACACCT 59.585 47.619 0.00 0.00 0.00 4.00
18 19 1.873698 TCGCACCAAAGTCTAACACC 58.126 50.000 0.00 0.00 0.00 4.16
19 20 2.806244 ACATCGCACCAAAGTCTAACAC 59.194 45.455 0.00 0.00 0.00 3.32
20 21 3.064207 GACATCGCACCAAAGTCTAACA 58.936 45.455 0.00 0.00 0.00 2.41
21 22 3.326747 AGACATCGCACCAAAGTCTAAC 58.673 45.455 0.00 0.00 37.75 2.34
22 23 3.678056 AGACATCGCACCAAAGTCTAA 57.322 42.857 0.00 0.00 37.75 2.10
23 24 5.339008 AATAGACATCGCACCAAAGTCTA 57.661 39.130 0.00 0.00 43.49 2.59
24 25 3.895232 ATAGACATCGCACCAAAGTCT 57.105 42.857 0.00 0.00 41.88 3.24
25 26 4.437390 CCAAATAGACATCGCACCAAAGTC 60.437 45.833 0.00 0.00 0.00 3.01
26 27 3.440173 CCAAATAGACATCGCACCAAAGT 59.560 43.478 0.00 0.00 0.00 2.66
27 28 3.440173 ACCAAATAGACATCGCACCAAAG 59.560 43.478 0.00 0.00 0.00 2.77
28 29 3.417101 ACCAAATAGACATCGCACCAAA 58.583 40.909 0.00 0.00 0.00 3.28
29 30 3.066291 ACCAAATAGACATCGCACCAA 57.934 42.857 0.00 0.00 0.00 3.67
30 31 2.779755 ACCAAATAGACATCGCACCA 57.220 45.000 0.00 0.00 0.00 4.17
31 32 5.408604 CCTAATACCAAATAGACATCGCACC 59.591 44.000 0.00 0.00 0.00 5.01
32 33 5.107065 GCCTAATACCAAATAGACATCGCAC 60.107 44.000 0.00 0.00 0.00 5.34
33 34 4.994852 GCCTAATACCAAATAGACATCGCA 59.005 41.667 0.00 0.00 0.00 5.10
34 35 4.392138 GGCCTAATACCAAATAGACATCGC 59.608 45.833 0.00 0.00 0.00 4.58
35 36 4.935808 GGGCCTAATACCAAATAGACATCG 59.064 45.833 0.84 0.00 0.00 3.84
36 37 4.935808 CGGGCCTAATACCAAATAGACATC 59.064 45.833 0.84 0.00 0.00 3.06
37 38 4.595781 TCGGGCCTAATACCAAATAGACAT 59.404 41.667 0.84 0.00 0.00 3.06
38 39 3.968649 TCGGGCCTAATACCAAATAGACA 59.031 43.478 0.84 0.00 0.00 3.41
39 40 4.612264 TCGGGCCTAATACCAAATAGAC 57.388 45.455 0.84 0.00 0.00 2.59
40 41 4.409574 TGTTCGGGCCTAATACCAAATAGA 59.590 41.667 0.84 0.00 0.00 1.98
41 42 4.710324 TGTTCGGGCCTAATACCAAATAG 58.290 43.478 0.84 0.00 0.00 1.73
42 43 4.774660 TGTTCGGGCCTAATACCAAATA 57.225 40.909 0.84 0.00 0.00 1.40
43 44 3.655615 TGTTCGGGCCTAATACCAAAT 57.344 42.857 0.84 0.00 0.00 2.32
44 45 3.655615 ATGTTCGGGCCTAATACCAAA 57.344 42.857 0.84 0.00 0.00 3.28
45 46 3.655615 AATGTTCGGGCCTAATACCAA 57.344 42.857 0.84 0.00 0.00 3.67
46 47 3.968649 TCTAATGTTCGGGCCTAATACCA 59.031 43.478 0.84 0.00 0.00 3.25
47 48 4.202284 TGTCTAATGTTCGGGCCTAATACC 60.202 45.833 0.84 0.00 0.00 2.73
48 49 4.748600 GTGTCTAATGTTCGGGCCTAATAC 59.251 45.833 0.84 0.00 0.00 1.89
49 50 4.500205 CGTGTCTAATGTTCGGGCCTAATA 60.500 45.833 0.84 0.00 0.00 0.98
50 51 3.740141 CGTGTCTAATGTTCGGGCCTAAT 60.740 47.826 0.84 0.00 0.00 1.73
51 52 2.417651 CGTGTCTAATGTTCGGGCCTAA 60.418 50.000 0.84 0.00 0.00 2.69
52 53 1.135527 CGTGTCTAATGTTCGGGCCTA 59.864 52.381 0.84 0.00 0.00 3.93
53 54 0.108329 CGTGTCTAATGTTCGGGCCT 60.108 55.000 0.84 0.00 0.00 5.19
54 55 1.702491 GCGTGTCTAATGTTCGGGCC 61.702 60.000 0.00 0.00 0.00 5.80
55 56 1.702491 GGCGTGTCTAATGTTCGGGC 61.702 60.000 0.00 0.00 0.00 6.13
56 57 0.108329 AGGCGTGTCTAATGTTCGGG 60.108 55.000 0.00 0.00 0.00 5.14
57 58 1.659098 GAAGGCGTGTCTAATGTTCGG 59.341 52.381 0.00 0.00 0.00 4.30
58 59 2.333926 TGAAGGCGTGTCTAATGTTCG 58.666 47.619 0.00 0.00 0.00 3.95
59 60 3.932710 TGATGAAGGCGTGTCTAATGTTC 59.067 43.478 0.00 0.00 0.00 3.18
60 61 3.937814 TGATGAAGGCGTGTCTAATGTT 58.062 40.909 0.00 0.00 0.00 2.71
61 62 3.610040 TGATGAAGGCGTGTCTAATGT 57.390 42.857 0.00 0.00 0.00 2.71
62 63 3.310774 CCTTGATGAAGGCGTGTCTAATG 59.689 47.826 0.00 0.00 42.60 1.90
63 64 3.535561 CCTTGATGAAGGCGTGTCTAAT 58.464 45.455 0.00 0.00 42.60 1.73
64 65 2.354704 CCCTTGATGAAGGCGTGTCTAA 60.355 50.000 5.26 0.00 46.89 2.10
65 66 1.207089 CCCTTGATGAAGGCGTGTCTA 59.793 52.381 5.26 0.00 46.89 2.59
66 67 0.036010 CCCTTGATGAAGGCGTGTCT 60.036 55.000 5.26 0.00 46.89 3.41
67 68 0.036388 TCCCTTGATGAAGGCGTGTC 60.036 55.000 5.26 0.00 46.89 3.67
68 69 0.620556 ATCCCTTGATGAAGGCGTGT 59.379 50.000 5.26 0.00 46.89 4.49
69 70 2.487934 CTATCCCTTGATGAAGGCGTG 58.512 52.381 5.26 0.00 46.89 5.34
70 71 1.417890 CCTATCCCTTGATGAAGGCGT 59.582 52.381 5.26 0.00 46.89 5.68
71 72 1.694150 TCCTATCCCTTGATGAAGGCG 59.306 52.381 5.26 0.00 46.89 5.52
72 73 2.708325 ACTCCTATCCCTTGATGAAGGC 59.292 50.000 5.26 0.00 46.89 4.35
74 75 4.590647 TGCTACTCCTATCCCTTGATGAAG 59.409 45.833 0.00 0.00 32.18 3.02
75 76 4.556697 TGCTACTCCTATCCCTTGATGAA 58.443 43.478 0.00 0.00 32.18 2.57
76 77 4.199002 TGCTACTCCTATCCCTTGATGA 57.801 45.455 0.00 0.00 32.18 2.92
77 78 4.636249 GTTGCTACTCCTATCCCTTGATG 58.364 47.826 0.00 0.00 32.18 3.07
78 79 3.322254 CGTTGCTACTCCTATCCCTTGAT 59.678 47.826 0.00 0.00 34.87 2.57
79 80 2.693591 CGTTGCTACTCCTATCCCTTGA 59.306 50.000 0.00 0.00 0.00 3.02
80 81 2.224066 CCGTTGCTACTCCTATCCCTTG 60.224 54.545 0.00 0.00 0.00 3.61
81 82 2.040178 CCGTTGCTACTCCTATCCCTT 58.960 52.381 0.00 0.00 0.00 3.95
82 83 1.063114 ACCGTTGCTACTCCTATCCCT 60.063 52.381 0.00 0.00 0.00 4.20
83 84 1.068741 CACCGTTGCTACTCCTATCCC 59.931 57.143 0.00 0.00 0.00 3.85
84 85 1.755380 ACACCGTTGCTACTCCTATCC 59.245 52.381 0.00 0.00 0.00 2.59
85 86 3.119245 TCAACACCGTTGCTACTCCTATC 60.119 47.826 1.94 0.00 0.00 2.08
86 87 2.829720 TCAACACCGTTGCTACTCCTAT 59.170 45.455 1.94 0.00 0.00 2.57
87 88 2.241160 TCAACACCGTTGCTACTCCTA 58.759 47.619 1.94 0.00 0.00 2.94
88 89 1.045407 TCAACACCGTTGCTACTCCT 58.955 50.000 1.94 0.00 0.00 3.69
89 90 1.529865 GTTCAACACCGTTGCTACTCC 59.470 52.381 1.94 0.00 0.00 3.85
90 91 2.480845 AGTTCAACACCGTTGCTACTC 58.519 47.619 1.94 0.00 0.00 2.59
91 92 2.614829 AGTTCAACACCGTTGCTACT 57.385 45.000 1.94 5.56 0.00 2.57
92 93 5.049954 TCAATAAGTTCAACACCGTTGCTAC 60.050 40.000 1.94 3.58 0.00 3.58
93 94 5.057819 TCAATAAGTTCAACACCGTTGCTA 58.942 37.500 1.94 0.00 0.00 3.49
94 95 3.880490 TCAATAAGTTCAACACCGTTGCT 59.120 39.130 1.94 0.00 0.00 3.91
95 96 4.217754 TCAATAAGTTCAACACCGTTGC 57.782 40.909 1.94 0.00 0.00 4.17
96 97 5.757886 ACATCAATAAGTTCAACACCGTTG 58.242 37.500 0.33 0.33 0.00 4.10
97 98 7.412563 CGATACATCAATAAGTTCAACACCGTT 60.413 37.037 0.00 0.00 0.00 4.44
98 99 6.035650 CGATACATCAATAAGTTCAACACCGT 59.964 38.462 0.00 0.00 0.00 4.83
99 100 6.035650 ACGATACATCAATAAGTTCAACACCG 59.964 38.462 0.00 0.00 0.00 4.94
100 101 7.277981 AGACGATACATCAATAAGTTCAACACC 59.722 37.037 0.00 0.00 0.00 4.16
101 102 8.186178 AGACGATACATCAATAAGTTCAACAC 57.814 34.615 0.00 0.00 0.00 3.32
102 103 8.655970 CAAGACGATACATCAATAAGTTCAACA 58.344 33.333 0.00 0.00 0.00 3.33
103 104 8.656849 ACAAGACGATACATCAATAAGTTCAAC 58.343 33.333 0.00 0.00 0.00 3.18
104 105 8.771920 ACAAGACGATACATCAATAAGTTCAA 57.228 30.769 0.00 0.00 0.00 2.69
107 108 9.261180 CCATACAAGACGATACATCAATAAGTT 57.739 33.333 0.00 0.00 0.00 2.66
108 109 8.421784 ACCATACAAGACGATACATCAATAAGT 58.578 33.333 0.00 0.00 0.00 2.24
109 110 8.818141 ACCATACAAGACGATACATCAATAAG 57.182 34.615 0.00 0.00 0.00 1.73
110 111 8.638873 AGACCATACAAGACGATACATCAATAA 58.361 33.333 0.00 0.00 0.00 1.40
111 112 8.178313 AGACCATACAAGACGATACATCAATA 57.822 34.615 0.00 0.00 0.00 1.90
112 113 7.055667 AGACCATACAAGACGATACATCAAT 57.944 36.000 0.00 0.00 0.00 2.57
113 114 6.465439 AGACCATACAAGACGATACATCAA 57.535 37.500 0.00 0.00 0.00 2.57
114 115 6.465439 AAGACCATACAAGACGATACATCA 57.535 37.500 0.00 0.00 0.00 3.07
115 116 8.916654 CATAAAGACCATACAAGACGATACATC 58.083 37.037 0.00 0.00 0.00 3.06
116 117 8.638873 TCATAAAGACCATACAAGACGATACAT 58.361 33.333 0.00 0.00 0.00 2.29
117 118 8.002984 TCATAAAGACCATACAAGACGATACA 57.997 34.615 0.00 0.00 0.00 2.29
118 119 8.867112 TTCATAAAGACCATACAAGACGATAC 57.133 34.615 0.00 0.00 0.00 2.24
147 148 8.733458 GGATGAAGCATGCAGTCATATTATTAA 58.267 33.333 27.37 3.25 32.18 1.40
148 149 7.884354 TGGATGAAGCATGCAGTCATATTATTA 59.116 33.333 27.37 13.31 37.28 0.98
149 150 6.717997 TGGATGAAGCATGCAGTCATATTATT 59.282 34.615 27.37 12.65 37.28 1.40
150 151 6.243148 TGGATGAAGCATGCAGTCATATTAT 58.757 36.000 27.37 13.23 37.28 1.28
151 152 5.623169 TGGATGAAGCATGCAGTCATATTA 58.377 37.500 27.37 17.56 37.28 0.98
152 153 4.466827 TGGATGAAGCATGCAGTCATATT 58.533 39.130 27.37 13.82 37.28 1.28
153 154 4.094830 TGGATGAAGCATGCAGTCATAT 57.905 40.909 27.37 14.40 37.28 1.78
154 155 3.564053 TGGATGAAGCATGCAGTCATA 57.436 42.857 27.37 15.90 37.28 2.15
155 156 2.430248 TGGATGAAGCATGCAGTCAT 57.570 45.000 27.56 27.56 37.28 3.06
156 157 3.961582 TGGATGAAGCATGCAGTCA 57.038 47.368 21.98 21.93 37.28 3.41
160 161 1.029681 GCATCTGGATGAAGCATGCA 58.970 50.000 21.98 0.00 39.73 3.96
161 162 1.001268 CTGCATCTGGATGAAGCATGC 60.001 52.381 10.51 10.51 46.37 4.06
162 163 2.550180 CTCTGCATCTGGATGAAGCATG 59.450 50.000 13.96 0.00 46.37 4.06
163 164 2.487445 CCTCTGCATCTGGATGAAGCAT 60.487 50.000 13.96 0.00 46.37 3.79
164 165 1.134189 CCTCTGCATCTGGATGAAGCA 60.134 52.381 13.96 4.68 45.58 3.91
165 166 1.134159 ACCTCTGCATCTGGATGAAGC 60.134 52.381 13.96 0.33 42.92 3.86
166 167 2.802415 CGACCTCTGCATCTGGATGAAG 60.802 54.545 13.96 12.61 44.27 3.02
167 168 1.137675 CGACCTCTGCATCTGGATGAA 59.862 52.381 13.96 3.05 41.20 2.57
168 169 0.749049 CGACCTCTGCATCTGGATGA 59.251 55.000 13.96 0.04 41.20 2.92
169 170 0.749049 TCGACCTCTGCATCTGGATG 59.251 55.000 6.24 6.24 41.60 3.51
170 171 1.039068 CTCGACCTCTGCATCTGGAT 58.961 55.000 6.75 0.00 0.00 3.41
171 172 1.039785 CCTCGACCTCTGCATCTGGA 61.040 60.000 6.75 0.00 0.00 3.86
172 173 1.440893 CCTCGACCTCTGCATCTGG 59.559 63.158 0.00 0.00 0.00 3.86
173 174 1.326213 ACCCTCGACCTCTGCATCTG 61.326 60.000 0.00 0.00 0.00 2.90
174 175 0.259065 TACCCTCGACCTCTGCATCT 59.741 55.000 0.00 0.00 0.00 2.90
175 176 0.386113 GTACCCTCGACCTCTGCATC 59.614 60.000 0.00 0.00 0.00 3.91
176 177 0.324368 TGTACCCTCGACCTCTGCAT 60.324 55.000 0.00 0.00 0.00 3.96
177 178 0.324368 ATGTACCCTCGACCTCTGCA 60.324 55.000 0.00 0.00 0.00 4.41
178 179 0.824759 AATGTACCCTCGACCTCTGC 59.175 55.000 0.00 0.00 0.00 4.26
179 180 2.359531 GAGAATGTACCCTCGACCTCTG 59.640 54.545 0.00 0.00 0.00 3.35
180 181 2.657143 GAGAATGTACCCTCGACCTCT 58.343 52.381 0.00 0.00 0.00 3.69
181 182 1.682323 GGAGAATGTACCCTCGACCTC 59.318 57.143 0.00 0.00 0.00 3.85
182 183 1.288335 AGGAGAATGTACCCTCGACCT 59.712 52.381 0.00 0.00 0.00 3.85
183 184 1.777941 AGGAGAATGTACCCTCGACC 58.222 55.000 0.00 0.00 0.00 4.79
184 185 3.889520 AAAGGAGAATGTACCCTCGAC 57.110 47.619 0.00 0.00 0.00 4.20
185 186 3.835978 TGAAAAGGAGAATGTACCCTCGA 59.164 43.478 0.00 0.00 0.00 4.04
186 187 4.202245 TGAAAAGGAGAATGTACCCTCG 57.798 45.455 0.00 0.00 0.00 4.63
187 188 6.894339 TTTTGAAAAGGAGAATGTACCCTC 57.106 37.500 0.00 0.00 0.00 4.30
210 211 1.733526 GGCACGCTCCACACTTTTT 59.266 52.632 0.00 0.00 0.00 1.94
211 212 2.193536 GGGCACGCTCCACACTTTT 61.194 57.895 0.00 0.00 0.00 2.27
212 213 2.594592 GGGCACGCTCCACACTTT 60.595 61.111 0.00 0.00 0.00 2.66
213 214 2.624674 AAAGGGCACGCTCCACACTT 62.625 55.000 0.00 0.00 0.00 3.16
214 215 3.120086 AAAGGGCACGCTCCACACT 62.120 57.895 0.00 0.00 0.00 3.55
215 216 2.594592 AAAGGGCACGCTCCACAC 60.595 61.111 0.00 0.00 0.00 3.82
216 217 2.281484 GAAAGGGCACGCTCCACA 60.281 61.111 0.00 0.00 0.00 4.17
217 218 3.056328 GGAAAGGGCACGCTCCAC 61.056 66.667 4.61 0.00 0.00 4.02
218 219 4.344865 GGGAAAGGGCACGCTCCA 62.345 66.667 11.04 0.00 0.00 3.86
219 220 4.344865 TGGGAAAGGGCACGCTCC 62.345 66.667 0.89 0.89 0.00 4.70
220 221 3.056328 GTGGGAAAGGGCACGCTC 61.056 66.667 0.00 0.00 0.00 5.03
221 222 3.133365 AAGTGGGAAAGGGCACGCT 62.133 57.895 0.00 0.00 32.39 5.07
257 261 3.242413 GCATGTATGTACGCTGGTCAAAG 60.242 47.826 0.00 0.00 0.00 2.77
280 284 8.953368 ATAGTAGTTTTTATCCCAAACCGTAG 57.047 34.615 0.00 0.00 35.10 3.51
283 287 8.047413 ACAATAGTAGTTTTTATCCCAAACCG 57.953 34.615 0.00 0.00 35.10 4.44
317 321 3.767131 TCCACCGATCTGTACTGAAATCA 59.233 43.478 6.54 0.00 0.00 2.57
334 338 9.956720 CTTTGTTCAATGATAATATTCTCCACC 57.043 33.333 0.00 0.00 0.00 4.61
448 489 5.991933 ATCTAAACTCTCTCTGCTTGACA 57.008 39.130 0.00 0.00 0.00 3.58
467 508 4.682778 TGCCCACGCTATACTAAAATCT 57.317 40.909 0.00 0.00 35.36 2.40
471 512 6.292923 ACAATATTGCCCACGCTATACTAAA 58.707 36.000 15.48 0.00 35.88 1.85
474 515 4.040461 AGACAATATTGCCCACGCTATACT 59.960 41.667 15.48 0.00 35.88 2.12
475 516 4.315803 AGACAATATTGCCCACGCTATAC 58.684 43.478 15.48 0.00 35.88 1.47
477 518 3.492102 AGACAATATTGCCCACGCTAT 57.508 42.857 15.48 0.00 34.67 2.97
480 555 2.163412 TCAAAGACAATATTGCCCACGC 59.837 45.455 15.48 0.00 0.00 5.34
481 556 4.155826 TCTTCAAAGACAATATTGCCCACG 59.844 41.667 15.48 2.26 0.00 4.94
486 561 9.339492 CTCTTTCTTCTTCAAAGACAATATTGC 57.661 33.333 15.48 8.36 35.40 3.56
494 569 6.203723 TGCTAAGCTCTTTCTTCTTCAAAGAC 59.796 38.462 0.00 0.00 35.40 3.01
523 598 6.069440 TGTCCATCAAGAAGGTTTATCCAGAT 60.069 38.462 0.00 0.00 39.02 2.90
568 643 3.659786 TGAGCCAATGCGTATATGGTAC 58.340 45.455 13.24 9.52 44.33 3.34
573 648 9.177608 ACAATTTATATGAGCCAATGCGTATAT 57.822 29.630 0.00 0.00 44.33 0.86
578 1065 7.222417 TCAAAACAATTTATATGAGCCAATGCG 59.778 33.333 0.00 0.00 44.33 4.73
611 1098 7.405769 CGATGGTGCAATTTTTAAGTTTGTTT 58.594 30.769 0.00 0.00 0.00 2.83
710 1269 7.424227 AATTTGTTACATGCAAACCATTCAG 57.576 32.000 8.58 0.00 38.44 3.02
713 1272 7.798596 TCAAATTTGTTACATGCAAACCATT 57.201 28.000 17.47 5.21 38.44 3.16
716 1275 8.086851 AGATTCAAATTTGTTACATGCAAACC 57.913 30.769 17.47 0.00 38.44 3.27
778 1339 4.018870 TGAAATGTAGGACATAGTTGGGCA 60.019 41.667 0.00 0.00 37.97 5.36
798 1368 8.621532 AAGTTAAAGATAAGCATGACAGTGAA 57.378 30.769 0.00 0.00 0.00 3.18
829 1739 5.130975 AGCATGGATCACACCAAGAATACTA 59.869 40.000 0.00 0.00 43.47 1.82
873 1783 1.749286 CGGGAAACAACCAAGTGGAGT 60.749 52.381 3.83 0.00 38.94 3.85
915 1825 2.159774 GCTTGCTCAAGTCTAGCGAAAC 60.160 50.000 10.86 0.00 43.11 2.78
2034 2977 1.621107 CGTACACACGCTAATCCGTT 58.379 50.000 0.00 0.00 42.05 4.44
2054 2997 3.075998 CGCACGACTAGCAGCAAG 58.924 61.111 0.00 0.00 0.00 4.01
2126 3084 3.952675 GCAGGCACACACACACGG 61.953 66.667 0.00 0.00 0.00 4.94
2158 3124 9.729023 CTGATGAAGTCTCTTATTACACTACAG 57.271 37.037 0.00 0.00 0.00 2.74
2159 3125 8.687242 CCTGATGAAGTCTCTTATTACACTACA 58.313 37.037 0.00 0.00 0.00 2.74
2160 3126 8.138712 CCCTGATGAAGTCTCTTATTACACTAC 58.861 40.741 0.00 0.00 0.00 2.73
2161 3127 8.059461 TCCCTGATGAAGTCTCTTATTACACTA 58.941 37.037 0.00 0.00 0.00 2.74
2162 3128 6.897966 TCCCTGATGAAGTCTCTTATTACACT 59.102 38.462 0.00 0.00 0.00 3.55
2185 3151 0.034616 AGCAAGCACTCAGTGACTCC 59.965 55.000 9.70 1.01 35.23 3.85
2266 3239 5.602145 AGTTTGAATCTGGTCCCAAAATTCA 59.398 36.000 14.96 14.96 35.24 2.57
2267 3240 6.101650 AGTTTGAATCTGGTCCCAAAATTC 57.898 37.500 11.49 11.49 31.39 2.17
2274 3247 4.392138 CGAAACTAGTTTGAATCTGGTCCC 59.608 45.833 25.17 5.52 32.11 4.46
2297 3270 9.921637 TGAATGTTGTCCTAATTTAATTGGTTC 57.078 29.630 0.00 0.00 0.00 3.62
2358 3333 6.585702 TCGAAATATGCCAACAATTGTTTCAG 59.414 34.615 21.10 13.54 35.83 3.02
2359 3334 6.364706 GTCGAAATATGCCAACAATTGTTTCA 59.635 34.615 21.10 20.08 35.83 2.69
2366 3342 3.312421 CCTCGTCGAAATATGCCAACAAT 59.688 43.478 0.00 0.00 0.00 2.71
2372 3355 1.499049 GGACCTCGTCGAAATATGCC 58.501 55.000 0.00 0.00 32.65 4.40
2381 3364 0.240411 AAAACTCTCGGACCTCGTCG 59.760 55.000 0.00 0.00 40.32 5.12
2400 3383 6.016108 CCGGGGTTTACAATTTCAGTTAAGAA 60.016 38.462 0.00 0.00 0.00 2.52
2401 3384 5.474189 CCGGGGTTTACAATTTCAGTTAAGA 59.526 40.000 0.00 0.00 0.00 2.10
2407 3390 3.150767 TCACCGGGGTTTACAATTTCAG 58.849 45.455 2.12 0.00 0.00 3.02
2423 3406 3.304559 CAGAGAGCGTAATCTTTTCACCG 59.695 47.826 0.00 0.00 0.00 4.94
2424 3407 3.619038 CCAGAGAGCGTAATCTTTTCACC 59.381 47.826 0.00 0.00 0.00 4.02
2425 3408 3.619038 CCCAGAGAGCGTAATCTTTTCAC 59.381 47.826 0.00 0.00 0.00 3.18
2429 3412 3.515901 AGAACCCAGAGAGCGTAATCTTT 59.484 43.478 0.00 0.00 0.00 2.52
2445 3428 6.541934 ACACAAGTATCTACCTAAGAACCC 57.458 41.667 0.00 0.00 37.89 4.11
2474 3465 9.543783 AAGTTTAGTCTAAGTGGACTTTTGTAG 57.456 33.333 2.43 0.00 43.14 2.74
2526 3517 7.652507 ACTCTAAAGAAGTTCTTTTCACTACCG 59.347 37.037 30.41 15.23 43.62 4.02
2527 3518 8.766151 CACTCTAAAGAAGTTCTTTTCACTACC 58.234 37.037 30.41 0.00 43.62 3.18
2534 3525 6.539103 ACGCTTCACTCTAAAGAAGTTCTTTT 59.461 34.615 30.41 17.24 43.62 2.27
2538 3529 5.908916 AACGCTTCACTCTAAAGAAGTTC 57.091 39.130 0.00 0.00 42.42 3.01
2541 3532 5.007724 ACCAAAACGCTTCACTCTAAAGAAG 59.992 40.000 0.00 0.00 43.12 2.85
2550 3547 1.021968 GGTCACCAAAACGCTTCACT 58.978 50.000 0.00 0.00 0.00 3.41
2553 3550 0.310854 CCTGGTCACCAAAACGCTTC 59.689 55.000 0.00 0.00 30.80 3.86
2558 3555 0.467290 TGGAGCCTGGTCACCAAAAC 60.467 55.000 0.00 0.00 30.80 2.43
2573 3570 3.582998 TTAATTCTGGGCTCCATGGAG 57.417 47.619 33.73 33.73 44.56 3.86
2574 3571 4.329638 TTTTAATTCTGGGCTCCATGGA 57.670 40.909 15.27 15.27 30.82 3.41
2601 3598 8.821894 TGTTGAAATCGGGAAGTTTTATTTTTG 58.178 29.630 0.00 0.00 0.00 2.44
2608 3605 7.477144 GATTTTGTTGAAATCGGGAAGTTTT 57.523 32.000 0.00 0.00 42.92 2.43
2622 3619 8.944029 TGCAAAAAGATTTTCAGATTTTGTTGA 58.056 25.926 10.00 0.00 40.99 3.18
2623 3620 9.557338 TTGCAAAAAGATTTTCAGATTTTGTTG 57.443 25.926 0.00 0.00 40.99 3.33
2641 3638 8.920665 CGTTTCATCCTTGTATTATTGCAAAAA 58.079 29.630 1.71 0.00 0.00 1.94
2642 3639 8.085296 ACGTTTCATCCTTGTATTATTGCAAAA 58.915 29.630 1.71 0.00 0.00 2.44
2643 3640 7.598278 ACGTTTCATCCTTGTATTATTGCAAA 58.402 30.769 1.71 0.00 0.00 3.68
2688 3685 8.943925 CGTCGTATTTCAACATATTTTTCATCC 58.056 33.333 0.00 0.00 0.00 3.51
2689 3686 9.697250 TCGTCGTATTTCAACATATTTTTCATC 57.303 29.630 0.00 0.00 0.00 2.92
2690 3687 9.702726 CTCGTCGTATTTCAACATATTTTTCAT 57.297 29.630 0.00 0.00 0.00 2.57
2691 3688 8.714179 ACTCGTCGTATTTCAACATATTTTTCA 58.286 29.630 0.00 0.00 0.00 2.69
2693 3690 9.962759 GTACTCGTCGTATTTCAACATATTTTT 57.037 29.630 0.00 0.00 0.00 1.94
2694 3691 9.142515 TGTACTCGTCGTATTTCAACATATTTT 57.857 29.630 0.00 0.00 0.00 1.82
2700 3697 6.825284 TTTTGTACTCGTCGTATTTCAACA 57.175 33.333 0.00 0.00 0.00 3.33
2732 3729 6.797454 ACTATTCGTCCTCAAAGTCATAGAC 58.203 40.000 0.00 0.00 0.00 2.59
2735 3732 8.350722 GTGATACTATTCGTCCTCAAAGTCATA 58.649 37.037 0.00 0.00 0.00 2.15
2736 3733 7.203910 GTGATACTATTCGTCCTCAAAGTCAT 58.796 38.462 0.00 0.00 0.00 3.06
2737 3734 6.561614 GTGATACTATTCGTCCTCAAAGTCA 58.438 40.000 0.00 0.00 0.00 3.41
2747 3744 6.801367 TTTTAGCACGTGATACTATTCGTC 57.199 37.500 22.23 0.00 34.30 4.20
2749 3746 7.218145 ACTTTTTAGCACGTGATACTATTCG 57.782 36.000 22.23 6.14 0.00 3.34
2785 3784 5.752472 ACGTTGAAATGATGATTGTGCAAAA 59.248 32.000 0.00 0.00 0.00 2.44
2821 3820 7.545265 GGCATAATGAACATGTGTGTACATTTT 59.455 33.333 0.00 0.60 45.01 1.82
2826 3825 5.220854 GGAGGCATAATGAACATGTGTGTAC 60.221 44.000 0.00 0.00 37.67 2.90
2828 3827 3.696051 GGAGGCATAATGAACATGTGTGT 59.304 43.478 0.00 0.00 41.28 3.72
2908 3909 7.984050 TGAAGGTCTACATTTGCAATTTTCAAA 59.016 29.630 0.00 5.42 37.75 2.69
2925 3926 1.681793 GCCGAGCTACATGAAGGTCTA 59.318 52.381 0.00 0.00 40.95 2.59
2928 3929 0.978146 AGGCCGAGCTACATGAAGGT 60.978 55.000 0.00 0.00 0.00 3.50
2933 3934 0.107703 TTTGGAGGCCGAGCTACATG 60.108 55.000 0.00 0.00 0.00 3.21
2992 4027 1.221414 GATGTTAGGACTCCATGCGC 58.779 55.000 0.00 0.00 0.00 6.09
3000 4035 3.139397 TGGTTTGTTGGGATGTTAGGACT 59.861 43.478 0.00 0.00 0.00 3.85
3004 4039 3.848726 GCATGGTTTGTTGGGATGTTAG 58.151 45.455 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.