Multiple sequence alignment - TraesCS2A01G570900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G570900 | chr2A | 100.000 | 4625 | 0 | 0 | 1 | 4625 | 768119434 | 768124058 | 0.000000e+00 | 8541.0 |
1 | TraesCS2A01G570900 | chr2A | 80.000 | 150 | 30 | 0 | 2030 | 2179 | 519530236 | 519530087 | 1.360000e-20 | 111.0 |
2 | TraesCS2A01G570900 | chr2A | 83.962 | 106 | 17 | 0 | 1659 | 1764 | 519530586 | 519530481 | 8.190000e-18 | 102.0 |
3 | TraesCS2A01G570900 | chrUn | 92.719 | 2843 | 146 | 21 | 1812 | 4625 | 31713358 | 31716168 | 0.000000e+00 | 4047.0 |
4 | TraesCS2A01G570900 | chrUn | 82.496 | 1394 | 104 | 66 | 291 | 1587 | 31711694 | 31713044 | 0.000000e+00 | 1094.0 |
5 | TraesCS2A01G570900 | chrUn | 96.212 | 132 | 5 | 0 | 1644 | 1775 | 31713076 | 31713207 | 2.800000e-52 | 217.0 |
6 | TraesCS2A01G570900 | chr2D | 93.922 | 2139 | 69 | 10 | 1635 | 3754 | 643230599 | 643232695 | 0.000000e+00 | 3173.0 |
7 | TraesCS2A01G570900 | chr2D | 92.489 | 892 | 54 | 6 | 3747 | 4625 | 643233822 | 643234713 | 0.000000e+00 | 1264.0 |
8 | TraesCS2A01G570900 | chr2D | 86.124 | 1045 | 50 | 32 | 633 | 1589 | 643229546 | 643230583 | 0.000000e+00 | 1038.0 |
9 | TraesCS2A01G570900 | chr2D | 88.845 | 251 | 26 | 1 | 1 | 251 | 150359754 | 150360002 | 1.620000e-79 | 307.0 |
10 | TraesCS2A01G570900 | chr2D | 87.302 | 252 | 29 | 2 | 1 | 251 | 497270417 | 497270666 | 7.570000e-73 | 285.0 |
11 | TraesCS2A01G570900 | chr2D | 86.957 | 253 | 29 | 2 | 1 | 251 | 356591512 | 356591762 | 9.800000e-72 | 281.0 |
12 | TraesCS2A01G570900 | chr2D | 85.616 | 146 | 13 | 6 | 290 | 433 | 643229117 | 643229256 | 3.730000e-31 | 147.0 |
13 | TraesCS2A01G570900 | chr2D | 79.870 | 154 | 30 | 1 | 2030 | 2182 | 384251473 | 384251320 | 1.360000e-20 | 111.0 |
14 | TraesCS2A01G570900 | chr2D | 83.019 | 106 | 18 | 0 | 1659 | 1764 | 384251823 | 384251718 | 3.810000e-16 | 97.1 |
15 | TraesCS2A01G570900 | chr3A | 88.000 | 250 | 28 | 1 | 2 | 251 | 37622818 | 37622571 | 1.260000e-75 | 294.0 |
16 | TraesCS2A01G570900 | chr3A | 87.649 | 251 | 29 | 1 | 1 | 251 | 37582693 | 37582445 | 1.630000e-74 | 291.0 |
17 | TraesCS2A01G570900 | chr7B | 87.251 | 251 | 30 | 1 | 1 | 251 | 508447378 | 508447130 | 7.570000e-73 | 285.0 |
18 | TraesCS2A01G570900 | chr7B | 92.754 | 69 | 5 | 0 | 1198 | 1266 | 133519337 | 133519405 | 2.940000e-17 | 100.0 |
19 | TraesCS2A01G570900 | chr1A | 87.097 | 248 | 30 | 1 | 4 | 251 | 135360525 | 135360280 | 3.520000e-71 | 279.0 |
20 | TraesCS2A01G570900 | chr1A | 76.522 | 230 | 48 | 6 | 3832 | 4058 | 2282474 | 2282700 | 2.260000e-23 | 121.0 |
21 | TraesCS2A01G570900 | chr1D | 86.747 | 249 | 31 | 1 | 3 | 251 | 159582606 | 159582360 | 4.560000e-70 | 276.0 |
22 | TraesCS2A01G570900 | chr4D | 86.454 | 251 | 32 | 1 | 1 | 251 | 309034450 | 309034202 | 1.640000e-69 | 274.0 |
23 | TraesCS2A01G570900 | chr6B | 85.930 | 199 | 21 | 5 | 1067 | 1265 | 14262 | 14453 | 6.070000e-49 | 206.0 |
24 | TraesCS2A01G570900 | chr6B | 83.417 | 199 | 27 | 4 | 1068 | 1266 | 673815198 | 673815390 | 3.680000e-41 | 180.0 |
25 | TraesCS2A01G570900 | chr6B | 82.412 | 199 | 29 | 3 | 1068 | 1266 | 673800165 | 673800357 | 7.960000e-38 | 169.0 |
26 | TraesCS2A01G570900 | chr7A | 83.920 | 199 | 26 | 2 | 1068 | 1266 | 124602050 | 124602242 | 7.900000e-43 | 185.0 |
27 | TraesCS2A01G570900 | chr7A | 80.000 | 220 | 23 | 9 | 1067 | 1265 | 217697008 | 217697227 | 4.820000e-30 | 143.0 |
28 | TraesCS2A01G570900 | chr3B | 83.163 | 196 | 27 | 3 | 1071 | 1266 | 582271968 | 582271779 | 1.710000e-39 | 174.0 |
29 | TraesCS2A01G570900 | chr2B | 79.012 | 162 | 31 | 3 | 2030 | 2189 | 454343560 | 454343400 | 1.760000e-19 | 108.0 |
30 | TraesCS2A01G570900 | chr2B | 82.075 | 106 | 19 | 0 | 1659 | 1764 | 454343907 | 454343802 | 1.770000e-14 | 91.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G570900 | chr2A | 768119434 | 768124058 | 4624 | False | 8541.0 | 8541 | 100.000000 | 1 | 4625 | 1 | chr2A.!!$F1 | 4624 |
1 | TraesCS2A01G570900 | chrUn | 31711694 | 31716168 | 4474 | False | 1786.0 | 4047 | 90.475667 | 291 | 4625 | 3 | chrUn.!!$F1 | 4334 |
2 | TraesCS2A01G570900 | chr2D | 643229117 | 643234713 | 5596 | False | 1405.5 | 3173 | 89.537750 | 290 | 4625 | 4 | chr2D.!!$F4 | 4335 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
327 | 332 | 0.038159 | ACGCGTTTCTTCTCCCTCTG | 60.038 | 55.0 | 5.58 | 0.0 | 0.0 | 3.35 | F |
1149 | 1366 | 0.036010 | CCTTGTCCTGATTGTCGCCT | 60.036 | 55.0 | 0.00 | 0.0 | 0.0 | 5.52 | F |
2159 | 2570 | 0.886563 | CCTTCGAGTGGGACTACGTT | 59.113 | 55.0 | 0.00 | 0.0 | 0.0 | 3.99 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2159 | 2570 | 0.239082 | ACGTACATTGCGTCTCGACA | 59.761 | 50.0 | 0.00 | 0.0 | 38.23 | 4.35 | R |
2564 | 2980 | 0.811219 | GCACGTAGCATGCCATCAGA | 60.811 | 55.0 | 15.66 | 0.0 | 44.79 | 3.27 | R |
3887 | 5441 | 0.250252 | TTCAGCACATCCGCAGTCAA | 60.250 | 50.0 | 0.00 | 0.0 | 0.00 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
37 | 38 | 8.617290 | ATGGTAGAACTTCTAAAATTGAACGT | 57.383 | 30.769 | 0.00 | 0.00 | 29.58 | 3.99 |
38 | 39 | 8.441312 | TGGTAGAACTTCTAAAATTGAACGTT | 57.559 | 30.769 | 0.00 | 0.00 | 29.58 | 3.99 |
39 | 40 | 8.339714 | TGGTAGAACTTCTAAAATTGAACGTTG | 58.660 | 33.333 | 5.00 | 0.00 | 29.58 | 4.10 |
40 | 41 | 7.322938 | GGTAGAACTTCTAAAATTGAACGTTGC | 59.677 | 37.037 | 5.00 | 0.00 | 29.58 | 4.17 |
41 | 42 | 6.791303 | AGAACTTCTAAAATTGAACGTTGCA | 58.209 | 32.000 | 5.00 | 0.29 | 0.00 | 4.08 |
42 | 43 | 6.691388 | AGAACTTCTAAAATTGAACGTTGCAC | 59.309 | 34.615 | 5.00 | 0.00 | 0.00 | 4.57 |
43 | 44 | 6.131544 | ACTTCTAAAATTGAACGTTGCACT | 57.868 | 33.333 | 5.00 | 0.00 | 0.00 | 4.40 |
44 | 45 | 7.254227 | ACTTCTAAAATTGAACGTTGCACTA | 57.746 | 32.000 | 5.00 | 0.00 | 0.00 | 2.74 |
45 | 46 | 7.699566 | ACTTCTAAAATTGAACGTTGCACTAA | 58.300 | 30.769 | 5.00 | 0.00 | 0.00 | 2.24 |
46 | 47 | 8.349983 | ACTTCTAAAATTGAACGTTGCACTAAT | 58.650 | 29.630 | 5.00 | 0.00 | 0.00 | 1.73 |
47 | 48 | 9.820229 | CTTCTAAAATTGAACGTTGCACTAATA | 57.180 | 29.630 | 5.00 | 0.00 | 0.00 | 0.98 |
49 | 50 | 9.767684 | TCTAAAATTGAACGTTGCACTAATATG | 57.232 | 29.630 | 5.00 | 0.00 | 0.00 | 1.78 |
50 | 51 | 7.810766 | AAAATTGAACGTTGCACTAATATGG | 57.189 | 32.000 | 5.00 | 0.00 | 0.00 | 2.74 |
51 | 52 | 6.509418 | AATTGAACGTTGCACTAATATGGT | 57.491 | 33.333 | 5.00 | 0.00 | 0.00 | 3.55 |
52 | 53 | 5.950758 | TTGAACGTTGCACTAATATGGTT | 57.049 | 34.783 | 5.00 | 0.00 | 0.00 | 3.67 |
53 | 54 | 5.289917 | TGAACGTTGCACTAATATGGTTG | 57.710 | 39.130 | 5.00 | 0.00 | 0.00 | 3.77 |
54 | 55 | 3.757745 | ACGTTGCACTAATATGGTTGC | 57.242 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
55 | 56 | 3.343617 | ACGTTGCACTAATATGGTTGCT | 58.656 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
56 | 57 | 4.509616 | ACGTTGCACTAATATGGTTGCTA | 58.490 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
57 | 58 | 4.938832 | ACGTTGCACTAATATGGTTGCTAA | 59.061 | 37.500 | 0.00 | 0.00 | 0.00 | 3.09 |
58 | 59 | 5.413213 | ACGTTGCACTAATATGGTTGCTAAA | 59.587 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
59 | 60 | 6.072397 | ACGTTGCACTAATATGGTTGCTAAAA | 60.072 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
60 | 61 | 6.250527 | CGTTGCACTAATATGGTTGCTAAAAC | 59.749 | 38.462 | 0.00 | 1.49 | 0.00 | 2.43 |
61 | 62 | 7.312899 | GTTGCACTAATATGGTTGCTAAAACT | 58.687 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
62 | 63 | 7.461182 | TGCACTAATATGGTTGCTAAAACTT | 57.539 | 32.000 | 4.78 | 0.00 | 0.00 | 2.66 |
63 | 64 | 7.891561 | TGCACTAATATGGTTGCTAAAACTTT | 58.108 | 30.769 | 4.78 | 0.00 | 0.00 | 2.66 |
64 | 65 | 8.364142 | TGCACTAATATGGTTGCTAAAACTTTT | 58.636 | 29.630 | 4.78 | 0.00 | 0.00 | 2.27 |
65 | 66 | 9.203421 | GCACTAATATGGTTGCTAAAACTTTTT | 57.797 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
96 | 97 | 8.713708 | TGGGACAAAGGAATGTTATAGAAAAA | 57.286 | 30.769 | 0.00 | 0.00 | 32.57 | 1.94 |
119 | 120 | 9.612066 | AAAAACTGCCATTCAAGAATTCTTTAA | 57.388 | 25.926 | 18.16 | 16.58 | 33.11 | 1.52 |
120 | 121 | 9.783081 | AAAACTGCCATTCAAGAATTCTTTAAT | 57.217 | 25.926 | 18.16 | 18.04 | 31.91 | 1.40 |
121 | 122 | 9.783081 | AAACTGCCATTCAAGAATTCTTTAATT | 57.217 | 25.926 | 20.15 | 7.39 | 38.03 | 1.40 |
122 | 123 | 8.767478 | ACTGCCATTCAAGAATTCTTTAATTG | 57.233 | 30.769 | 20.15 | 18.14 | 35.41 | 2.32 |
123 | 124 | 7.332678 | ACTGCCATTCAAGAATTCTTTAATTGC | 59.667 | 33.333 | 27.92 | 27.92 | 38.05 | 3.56 |
124 | 125 | 6.310956 | TGCCATTCAAGAATTCTTTAATTGCG | 59.689 | 34.615 | 28.24 | 18.66 | 39.27 | 4.85 |
125 | 126 | 6.311200 | GCCATTCAAGAATTCTTTAATTGCGT | 59.689 | 34.615 | 24.09 | 7.16 | 35.41 | 5.24 |
126 | 127 | 7.148590 | GCCATTCAAGAATTCTTTAATTGCGTT | 60.149 | 33.333 | 24.09 | 6.62 | 35.41 | 4.84 |
127 | 128 | 8.164153 | CCATTCAAGAATTCTTTAATTGCGTTG | 58.836 | 33.333 | 20.15 | 12.15 | 35.41 | 4.10 |
128 | 129 | 7.636259 | TTCAAGAATTCTTTAATTGCGTTGG | 57.364 | 32.000 | 18.16 | 3.01 | 35.41 | 3.77 |
129 | 130 | 6.976088 | TCAAGAATTCTTTAATTGCGTTGGA | 58.024 | 32.000 | 18.16 | 5.30 | 35.41 | 3.53 |
130 | 131 | 7.429633 | TCAAGAATTCTTTAATTGCGTTGGAA | 58.570 | 30.769 | 18.16 | 0.00 | 35.41 | 3.53 |
131 | 132 | 7.381139 | TCAAGAATTCTTTAATTGCGTTGGAAC | 59.619 | 33.333 | 18.16 | 0.00 | 35.41 | 3.62 |
132 | 133 | 6.981722 | AGAATTCTTTAATTGCGTTGGAACT | 58.018 | 32.000 | 0.88 | 0.00 | 35.41 | 3.01 |
133 | 134 | 7.433680 | AGAATTCTTTAATTGCGTTGGAACTT | 58.566 | 30.769 | 0.88 | 0.00 | 35.41 | 2.66 |
134 | 135 | 7.926018 | AGAATTCTTTAATTGCGTTGGAACTTT | 59.074 | 29.630 | 0.88 | 0.00 | 35.41 | 2.66 |
135 | 136 | 6.820470 | TTCTTTAATTGCGTTGGAACTTTG | 57.180 | 33.333 | 0.00 | 0.00 | 0.00 | 2.77 |
136 | 137 | 6.137794 | TCTTTAATTGCGTTGGAACTTTGA | 57.862 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
137 | 138 | 5.974751 | TCTTTAATTGCGTTGGAACTTTGAC | 59.025 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
138 | 139 | 5.508200 | TTAATTGCGTTGGAACTTTGACT | 57.492 | 34.783 | 0.00 | 0.00 | 0.00 | 3.41 |
139 | 140 | 4.385358 | AATTGCGTTGGAACTTTGACTT | 57.615 | 36.364 | 0.00 | 0.00 | 0.00 | 3.01 |
140 | 141 | 2.842208 | TGCGTTGGAACTTTGACTTG | 57.158 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
141 | 142 | 2.088423 | TGCGTTGGAACTTTGACTTGT | 58.912 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
142 | 143 | 3.271729 | TGCGTTGGAACTTTGACTTGTA | 58.728 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
143 | 144 | 3.690139 | TGCGTTGGAACTTTGACTTGTAA | 59.310 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
144 | 145 | 4.336993 | TGCGTTGGAACTTTGACTTGTAAT | 59.663 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
145 | 146 | 4.675114 | GCGTTGGAACTTTGACTTGTAATG | 59.325 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
146 | 147 | 5.504994 | GCGTTGGAACTTTGACTTGTAATGA | 60.505 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
147 | 148 | 6.668323 | CGTTGGAACTTTGACTTGTAATGAT | 58.332 | 36.000 | 0.00 | 0.00 | 0.00 | 2.45 |
148 | 149 | 6.578545 | CGTTGGAACTTTGACTTGTAATGATG | 59.421 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
149 | 150 | 6.012658 | TGGAACTTTGACTTGTAATGATGC | 57.987 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
150 | 151 | 5.769662 | TGGAACTTTGACTTGTAATGATGCT | 59.230 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
151 | 152 | 6.072508 | TGGAACTTTGACTTGTAATGATGCTC | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
152 | 153 | 5.886960 | ACTTTGACTTGTAATGATGCTCC | 57.113 | 39.130 | 0.00 | 0.00 | 0.00 | 4.70 |
153 | 154 | 5.564550 | ACTTTGACTTGTAATGATGCTCCT | 58.435 | 37.500 | 0.00 | 0.00 | 0.00 | 3.69 |
154 | 155 | 5.645497 | ACTTTGACTTGTAATGATGCTCCTC | 59.355 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
155 | 156 | 5.426689 | TTGACTTGTAATGATGCTCCTCT | 57.573 | 39.130 | 0.00 | 0.00 | 0.00 | 3.69 |
156 | 157 | 6.544928 | TTGACTTGTAATGATGCTCCTCTA | 57.455 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
157 | 158 | 5.907207 | TGACTTGTAATGATGCTCCTCTAC | 58.093 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
158 | 159 | 5.658634 | TGACTTGTAATGATGCTCCTCTACT | 59.341 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
159 | 160 | 6.155221 | TGACTTGTAATGATGCTCCTCTACTT | 59.845 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
160 | 161 | 7.342026 | TGACTTGTAATGATGCTCCTCTACTTA | 59.658 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
161 | 162 | 8.079211 | ACTTGTAATGATGCTCCTCTACTTAA | 57.921 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
162 | 163 | 8.540388 | ACTTGTAATGATGCTCCTCTACTTAAA | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
163 | 164 | 9.383519 | CTTGTAATGATGCTCCTCTACTTAAAA | 57.616 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
164 | 165 | 8.948631 | TGTAATGATGCTCCTCTACTTAAAAG | 57.051 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
165 | 166 | 8.758829 | TGTAATGATGCTCCTCTACTTAAAAGA | 58.241 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
166 | 167 | 9.601217 | GTAATGATGCTCCTCTACTTAAAAGAA | 57.399 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
167 | 168 | 8.499403 | AATGATGCTCCTCTACTTAAAAGAAC | 57.501 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
168 | 169 | 7.246171 | TGATGCTCCTCTACTTAAAAGAACT | 57.754 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
169 | 170 | 8.362464 | TGATGCTCCTCTACTTAAAAGAACTA | 57.638 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
170 | 171 | 8.812972 | TGATGCTCCTCTACTTAAAAGAACTAA | 58.187 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
171 | 172 | 9.654663 | GATGCTCCTCTACTTAAAAGAACTAAA | 57.345 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
173 | 174 | 9.269453 | TGCTCCTCTACTTAAAAGAACTAAAAC | 57.731 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
174 | 175 | 9.491675 | GCTCCTCTACTTAAAAGAACTAAAACT | 57.508 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
180 | 181 | 9.508495 | CTACTTAAAAGAACTAAAACTTACGCG | 57.492 | 33.333 | 3.53 | 3.53 | 0.00 | 6.01 |
181 | 182 | 7.347448 | ACTTAAAAGAACTAAAACTTACGCGG | 58.653 | 34.615 | 12.47 | 0.00 | 0.00 | 6.46 |
182 | 183 | 5.989551 | AAAAGAACTAAAACTTACGCGGA | 57.010 | 34.783 | 12.47 | 0.00 | 0.00 | 5.54 |
183 | 184 | 5.989551 | AAAGAACTAAAACTTACGCGGAA | 57.010 | 34.783 | 12.47 | 7.57 | 0.00 | 4.30 |
184 | 185 | 5.587033 | AAGAACTAAAACTTACGCGGAAG | 57.413 | 39.130 | 29.21 | 29.21 | 0.00 | 3.46 |
236 | 237 | 7.541122 | AGAAAAGCTTTATTCGTACTCATCC | 57.459 | 36.000 | 13.10 | 0.00 | 0.00 | 3.51 |
237 | 238 | 7.331791 | AGAAAAGCTTTATTCGTACTCATCCT | 58.668 | 34.615 | 13.10 | 0.00 | 0.00 | 3.24 |
238 | 239 | 8.475639 | AGAAAAGCTTTATTCGTACTCATCCTA | 58.524 | 33.333 | 13.10 | 0.00 | 0.00 | 2.94 |
239 | 240 | 8.421673 | AAAAGCTTTATTCGTACTCATCCTAC | 57.578 | 34.615 | 13.10 | 0.00 | 0.00 | 3.18 |
240 | 241 | 6.086785 | AGCTTTATTCGTACTCATCCTACC | 57.913 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
241 | 242 | 5.834204 | AGCTTTATTCGTACTCATCCTACCT | 59.166 | 40.000 | 0.00 | 0.00 | 0.00 | 3.08 |
242 | 243 | 6.324254 | AGCTTTATTCGTACTCATCCTACCTT | 59.676 | 38.462 | 0.00 | 0.00 | 0.00 | 3.50 |
243 | 244 | 6.421202 | GCTTTATTCGTACTCATCCTACCTTG | 59.579 | 42.308 | 0.00 | 0.00 | 0.00 | 3.61 |
244 | 245 | 3.795623 | TTCGTACTCATCCTACCTTGC | 57.204 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
245 | 246 | 2.730382 | TCGTACTCATCCTACCTTGCA | 58.270 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
246 | 247 | 3.093814 | TCGTACTCATCCTACCTTGCAA | 58.906 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
247 | 248 | 3.512329 | TCGTACTCATCCTACCTTGCAAA | 59.488 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
248 | 249 | 3.865745 | CGTACTCATCCTACCTTGCAAAG | 59.134 | 47.826 | 0.00 | 0.00 | 45.69 | 2.77 |
265 | 266 | 6.270156 | TGCAAAGATACAAGCAATCAATCA | 57.730 | 33.333 | 0.00 | 0.00 | 33.48 | 2.57 |
266 | 267 | 6.689554 | TGCAAAGATACAAGCAATCAATCAA | 58.310 | 32.000 | 0.00 | 0.00 | 33.48 | 2.57 |
267 | 268 | 7.153315 | TGCAAAGATACAAGCAATCAATCAAA | 58.847 | 30.769 | 0.00 | 0.00 | 33.48 | 2.69 |
268 | 269 | 7.656542 | TGCAAAGATACAAGCAATCAATCAAAA | 59.343 | 29.630 | 0.00 | 0.00 | 33.48 | 2.44 |
269 | 270 | 8.166706 | GCAAAGATACAAGCAATCAATCAAAAG | 58.833 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
270 | 271 | 8.653338 | CAAAGATACAAGCAATCAATCAAAAGG | 58.347 | 33.333 | 0.00 | 0.00 | 0.00 | 3.11 |
271 | 272 | 6.870769 | AGATACAAGCAATCAATCAAAAGGG | 58.129 | 36.000 | 0.00 | 0.00 | 0.00 | 3.95 |
272 | 273 | 4.276058 | ACAAGCAATCAATCAAAAGGGG | 57.724 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
273 | 274 | 3.903090 | ACAAGCAATCAATCAAAAGGGGA | 59.097 | 39.130 | 0.00 | 0.00 | 0.00 | 4.81 |
274 | 275 | 4.533311 | ACAAGCAATCAATCAAAAGGGGAT | 59.467 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
275 | 276 | 4.748277 | AGCAATCAATCAAAAGGGGATG | 57.252 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
276 | 277 | 3.118519 | AGCAATCAATCAAAAGGGGATGC | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
277 | 278 | 3.369681 | GCAATCAATCAAAAGGGGATGCA | 60.370 | 43.478 | 0.00 | 0.00 | 0.00 | 3.96 |
278 | 279 | 4.685030 | GCAATCAATCAAAAGGGGATGCAT | 60.685 | 41.667 | 0.00 | 0.00 | 0.00 | 3.96 |
279 | 280 | 4.682778 | ATCAATCAAAAGGGGATGCATG | 57.317 | 40.909 | 2.46 | 0.00 | 0.00 | 4.06 |
280 | 281 | 2.767394 | TCAATCAAAAGGGGATGCATGG | 59.233 | 45.455 | 2.46 | 0.00 | 0.00 | 3.66 |
281 | 282 | 2.767394 | CAATCAAAAGGGGATGCATGGA | 59.233 | 45.455 | 2.46 | 0.00 | 0.00 | 3.41 |
282 | 283 | 2.852714 | TCAAAAGGGGATGCATGGAT | 57.147 | 45.000 | 2.46 | 0.00 | 0.00 | 3.41 |
283 | 284 | 2.390696 | TCAAAAGGGGATGCATGGATG | 58.609 | 47.619 | 2.46 | 0.00 | 0.00 | 3.51 |
284 | 285 | 1.414919 | CAAAAGGGGATGCATGGATGG | 59.585 | 52.381 | 2.46 | 0.00 | 0.00 | 3.51 |
285 | 286 | 0.935942 | AAAGGGGATGCATGGATGGA | 59.064 | 50.000 | 2.46 | 0.00 | 0.00 | 3.41 |
286 | 287 | 1.164313 | AAGGGGATGCATGGATGGAT | 58.836 | 50.000 | 2.46 | 0.00 | 41.76 | 3.41 |
287 | 288 | 0.408309 | AGGGGATGCATGGATGGATG | 59.592 | 55.000 | 2.46 | 0.00 | 39.04 | 3.51 |
288 | 289 | 0.613853 | GGGGATGCATGGATGGATGG | 60.614 | 60.000 | 2.46 | 0.00 | 39.04 | 3.51 |
321 | 326 | 1.121967 | CACGTGTACGCGTTTCTTCTC | 59.878 | 52.381 | 30.35 | 3.82 | 43.83 | 2.87 |
325 | 330 | 1.068055 | TGTACGCGTTTCTTCTCCCTC | 60.068 | 52.381 | 20.78 | 0.00 | 0.00 | 4.30 |
326 | 331 | 1.201880 | GTACGCGTTTCTTCTCCCTCT | 59.798 | 52.381 | 20.78 | 0.00 | 0.00 | 3.69 |
327 | 332 | 0.038159 | ACGCGTTTCTTCTCCCTCTG | 60.038 | 55.000 | 5.58 | 0.00 | 0.00 | 3.35 |
328 | 333 | 0.243907 | CGCGTTTCTTCTCCCTCTGA | 59.756 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
329 | 334 | 1.734047 | CGCGTTTCTTCTCCCTCTGAG | 60.734 | 57.143 | 0.00 | 0.00 | 42.90 | 3.35 |
330 | 335 | 1.273886 | GCGTTTCTTCTCCCTCTGAGT | 59.726 | 52.381 | 3.66 | 0.00 | 42.12 | 3.41 |
331 | 336 | 2.928731 | GCGTTTCTTCTCCCTCTGAGTG | 60.929 | 54.545 | 3.66 | 0.00 | 42.12 | 3.51 |
347 | 352 | 1.775344 | GTGTGAGACATGACACGCG | 59.225 | 57.895 | 3.53 | 3.53 | 39.52 | 6.01 |
352 | 357 | 0.387367 | GAGACATGACACGCGTGAGT | 60.387 | 55.000 | 42.94 | 31.51 | 36.97 | 3.41 |
388 | 393 | 2.119801 | AGGAGCATGCACAAAGGTAG | 57.880 | 50.000 | 21.98 | 0.00 | 0.00 | 3.18 |
399 | 405 | 5.730550 | TGCACAAAGGTAGTATAGGAACAG | 58.269 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
413 | 419 | 6.642733 | ATAGGAACAGAAAGAAAGATGGGA | 57.357 | 37.500 | 0.00 | 0.00 | 0.00 | 4.37 |
464 | 525 | 2.232696 | TCGATCGATGTGGACCTGAAAA | 59.767 | 45.455 | 15.15 | 0.00 | 0.00 | 2.29 |
489 | 550 | 3.207677 | GTGACTCACTCACTGGCTG | 57.792 | 57.895 | 1.58 | 0.00 | 45.38 | 4.85 |
494 | 555 | 1.615883 | ACTCACTCACTGGCTGTACTG | 59.384 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
495 | 556 | 0.969149 | TCACTCACTGGCTGTACTGG | 59.031 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
509 | 584 | 4.788840 | GCTGTACTGGCGTGTGTATAGTAG | 60.789 | 50.000 | 1.65 | 0.00 | 32.75 | 2.57 |
510 | 585 | 3.628942 | TGTACTGGCGTGTGTATAGTAGG | 59.371 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
518 | 593 | 4.451774 | GCGTGTGTATAGTAGGAGGAGTAG | 59.548 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
571 | 648 | 2.358322 | ATCGAGGAGAGGAGAAGGAC | 57.642 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
614 | 752 | 2.045536 | CCCTCCTTGCTGACAGCC | 60.046 | 66.667 | 24.33 | 7.41 | 41.51 | 4.85 |
615 | 753 | 2.752358 | CCTCCTTGCTGACAGCCA | 59.248 | 61.111 | 24.33 | 13.07 | 41.51 | 4.75 |
617 | 755 | 1.374190 | CTCCTTGCTGACAGCCAGT | 59.626 | 57.895 | 24.33 | 0.00 | 44.71 | 4.00 |
618 | 756 | 0.954449 | CTCCTTGCTGACAGCCAGTG | 60.954 | 60.000 | 24.33 | 15.62 | 44.71 | 3.66 |
649 | 787 | 4.217210 | CCACCCACCCACCAGCAA | 62.217 | 66.667 | 0.00 | 0.00 | 0.00 | 3.91 |
650 | 788 | 2.118076 | CACCCACCCACCAGCAAT | 59.882 | 61.111 | 0.00 | 0.00 | 0.00 | 3.56 |
651 | 789 | 1.978617 | CACCCACCCACCAGCAATC | 60.979 | 63.158 | 0.00 | 0.00 | 0.00 | 2.67 |
652 | 790 | 2.362889 | CCCACCCACCAGCAATCC | 60.363 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
653 | 791 | 2.440147 | CCACCCACCAGCAATCCA | 59.560 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
654 | 792 | 1.679977 | CCACCCACCAGCAATCCAG | 60.680 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
655 | 793 | 2.036256 | ACCCACCAGCAATCCAGC | 59.964 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
656 | 794 | 2.036098 | CCCACCAGCAATCCAGCA | 59.964 | 61.111 | 0.00 | 0.00 | 36.85 | 4.41 |
709 | 848 | 3.817238 | TCGCCGCTGTTTTATTTTCTTC | 58.183 | 40.909 | 0.00 | 0.00 | 0.00 | 2.87 |
710 | 849 | 3.500680 | TCGCCGCTGTTTTATTTTCTTCT | 59.499 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
714 | 853 | 5.562890 | GCCGCTGTTTTATTTTCTTCTGTCT | 60.563 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
721 | 860 | 6.780706 | TTTATTTTCTTCTGTCTCGTGTCC | 57.219 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
732 | 871 | 3.432588 | CGTGTCCGGTCGCTCTCT | 61.433 | 66.667 | 10.47 | 0.00 | 0.00 | 3.10 |
735 | 874 | 2.041115 | TGTCCGGTCGCTCTCTCTG | 61.041 | 63.158 | 0.00 | 0.00 | 0.00 | 3.35 |
736 | 875 | 3.134792 | TCCGGTCGCTCTCTCTGC | 61.135 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
738 | 877 | 4.544689 | CGGTCGCTCTCTCTGCCG | 62.545 | 72.222 | 0.00 | 0.00 | 0.00 | 5.69 |
745 | 897 | 4.074526 | TCTCTCTGCCGCTGCACC | 62.075 | 66.667 | 0.00 | 0.00 | 44.23 | 5.01 |
773 | 925 | 3.173853 | GGCGCACGAATTAGCACA | 58.826 | 55.556 | 10.83 | 0.00 | 0.00 | 4.57 |
776 | 930 | 1.120147 | GCGCACGAATTAGCACAACG | 61.120 | 55.000 | 0.30 | 0.00 | 0.00 | 4.10 |
784 | 938 | 1.668419 | ATTAGCACAACGATGAGGCC | 58.332 | 50.000 | 0.00 | 0.00 | 33.09 | 5.19 |
866 | 1045 | 1.732941 | CGTACCAACATAAGCTGCCA | 58.267 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
873 | 1052 | 2.515523 | ATAAGCTGCCAGCCGCTG | 60.516 | 61.111 | 14.25 | 13.82 | 43.77 | 5.18 |
886 | 1065 | 3.520862 | CGCTGCAATTCCCGGCAT | 61.521 | 61.111 | 0.00 | 0.00 | 39.65 | 4.40 |
887 | 1066 | 2.105528 | GCTGCAATTCCCGGCATG | 59.894 | 61.111 | 0.00 | 0.00 | 39.65 | 4.06 |
888 | 1067 | 2.105528 | CTGCAATTCCCGGCATGC | 59.894 | 61.111 | 9.90 | 9.90 | 39.65 | 4.06 |
889 | 1068 | 3.435030 | CTGCAATTCCCGGCATGCC | 62.435 | 63.158 | 27.67 | 27.67 | 39.65 | 4.40 |
964 | 1148 | 3.279434 | GCACATTCTTAATTCGTCCCCT | 58.721 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
1149 | 1366 | 0.036010 | CCTTGTCCTGATTGTCGCCT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1341 | 1558 | 4.759096 | ATGCGCGCGTTTCCTTGC | 62.759 | 61.111 | 32.35 | 12.41 | 0.00 | 4.01 |
1345 | 1562 | 2.499732 | GCGCGTTTCCTTGCTTCG | 60.500 | 61.111 | 8.43 | 0.00 | 0.00 | 3.79 |
1385 | 1603 | 4.421479 | CGTTCCGCTGCTCCGACT | 62.421 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
1387 | 1605 | 2.095252 | GTTCCGCTGCTCCGACTTC | 61.095 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
1511 | 1755 | 2.835431 | CTCGCCCGTCCTCTCCAT | 60.835 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1599 | 1858 | 7.563906 | TCTTTGAATGAATTCCACAAAAAGGT | 58.436 | 30.769 | 16.50 | 0.00 | 35.97 | 3.50 |
1600 | 1859 | 7.495279 | TCTTTGAATGAATTCCACAAAAAGGTG | 59.505 | 33.333 | 16.50 | 9.22 | 35.97 | 4.00 |
1601 | 1860 | 6.232581 | TGAATGAATTCCACAAAAAGGTGT | 57.767 | 33.333 | 2.27 | 0.00 | 37.06 | 4.16 |
1602 | 1861 | 6.047870 | TGAATGAATTCCACAAAAAGGTGTG | 58.952 | 36.000 | 2.27 | 0.00 | 46.98 | 3.82 |
1610 | 1869 | 4.399004 | CACAAAAAGGTGTGGAATTCCA | 57.601 | 40.909 | 23.63 | 23.63 | 44.29 | 3.53 |
1625 | 1884 | 7.342769 | TGGAATTCCATCTCAAGATTCATTG | 57.657 | 36.000 | 23.63 | 0.00 | 42.01 | 2.82 |
1626 | 1885 | 7.120716 | TGGAATTCCATCTCAAGATTCATTGA | 58.879 | 34.615 | 23.63 | 0.00 | 42.01 | 2.57 |
1627 | 1886 | 7.067859 | TGGAATTCCATCTCAAGATTCATTGAC | 59.932 | 37.037 | 23.63 | 0.00 | 42.01 | 3.18 |
1628 | 1887 | 6.615264 | ATTCCATCTCAAGATTCATTGACG | 57.385 | 37.500 | 0.00 | 0.00 | 35.40 | 4.35 |
1629 | 1888 | 5.343307 | TCCATCTCAAGATTCATTGACGA | 57.657 | 39.130 | 0.00 | 0.00 | 35.40 | 4.20 |
1630 | 1889 | 5.922053 | TCCATCTCAAGATTCATTGACGAT | 58.078 | 37.500 | 0.00 | 0.00 | 35.40 | 3.73 |
1631 | 1890 | 6.351711 | TCCATCTCAAGATTCATTGACGATT | 58.648 | 36.000 | 0.00 | 0.00 | 35.40 | 3.34 |
1632 | 1891 | 6.259387 | TCCATCTCAAGATTCATTGACGATTG | 59.741 | 38.462 | 0.00 | 0.00 | 35.40 | 2.67 |
1633 | 1892 | 5.475273 | TCTCAAGATTCATTGACGATTGC | 57.525 | 39.130 | 0.00 | 0.00 | 35.40 | 3.56 |
1749 | 2012 | 1.815421 | AGCGGCAAATGCTACGAGG | 60.815 | 57.895 | 1.45 | 0.00 | 41.87 | 4.63 |
1804 | 2195 | 1.409427 | CCCTACCTCTCATCCAACGTC | 59.591 | 57.143 | 0.00 | 0.00 | 0.00 | 4.34 |
1805 | 2196 | 2.379972 | CCTACCTCTCATCCAACGTCT | 58.620 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
1806 | 2197 | 2.359531 | CCTACCTCTCATCCAACGTCTC | 59.640 | 54.545 | 0.00 | 0.00 | 0.00 | 3.36 |
1807 | 2198 | 1.924731 | ACCTCTCATCCAACGTCTCA | 58.075 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2159 | 2570 | 0.886563 | CCTTCGAGTGGGACTACGTT | 59.113 | 55.000 | 0.00 | 0.00 | 0.00 | 3.99 |
2237 | 2653 | 3.294214 | GCCATGGATCATTTCTTCCTGT | 58.706 | 45.455 | 18.40 | 0.00 | 32.95 | 4.00 |
2239 | 2655 | 3.635373 | CCATGGATCATTTCTTCCTGTGG | 59.365 | 47.826 | 5.56 | 0.00 | 34.49 | 4.17 |
2240 | 2656 | 4.275810 | CATGGATCATTTCTTCCTGTGGT | 58.724 | 43.478 | 0.00 | 0.00 | 32.95 | 4.16 |
2241 | 2657 | 3.689347 | TGGATCATTTCTTCCTGTGGTG | 58.311 | 45.455 | 0.00 | 0.00 | 32.95 | 4.17 |
2242 | 2658 | 3.074390 | TGGATCATTTCTTCCTGTGGTGT | 59.926 | 43.478 | 0.00 | 0.00 | 32.95 | 4.16 |
2243 | 2659 | 4.288366 | TGGATCATTTCTTCCTGTGGTGTA | 59.712 | 41.667 | 0.00 | 0.00 | 32.95 | 2.90 |
2246 | 2662 | 6.127897 | GGATCATTTCTTCCTGTGGTGTAAAG | 60.128 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
2247 | 2663 | 5.935945 | TCATTTCTTCCTGTGGTGTAAAGA | 58.064 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
2248 | 2664 | 5.997746 | TCATTTCTTCCTGTGGTGTAAAGAG | 59.002 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2322 | 2738 | 4.570663 | CCTAAGCGGGCCGAGTCG | 62.571 | 72.222 | 33.44 | 14.32 | 0.00 | 4.18 |
2325 | 2741 | 2.552585 | CTAAGCGGGCCGAGTCGAAA | 62.553 | 60.000 | 33.44 | 5.73 | 0.00 | 3.46 |
2349 | 2765 | 2.671682 | GACTCCAAGGGGCAGTCC | 59.328 | 66.667 | 0.00 | 0.00 | 31.93 | 3.85 |
2500 | 2916 | 2.541178 | GCCGTCGACTTCTACATGGTAG | 60.541 | 54.545 | 14.70 | 0.00 | 0.00 | 3.18 |
2501 | 2917 | 2.681848 | CCGTCGACTTCTACATGGTAGT | 59.318 | 50.000 | 14.70 | 0.00 | 0.00 | 2.73 |
2502 | 2918 | 3.873361 | CCGTCGACTTCTACATGGTAGTA | 59.127 | 47.826 | 14.70 | 0.00 | 0.00 | 1.82 |
2503 | 2919 | 4.333649 | CCGTCGACTTCTACATGGTAGTAA | 59.666 | 45.833 | 14.70 | 0.00 | 0.00 | 2.24 |
2504 | 2920 | 5.163723 | CCGTCGACTTCTACATGGTAGTAAA | 60.164 | 44.000 | 14.70 | 0.00 | 0.00 | 2.01 |
2505 | 2921 | 6.317088 | CGTCGACTTCTACATGGTAGTAAAA | 58.683 | 40.000 | 14.70 | 0.00 | 0.00 | 1.52 |
2506 | 2922 | 6.803320 | CGTCGACTTCTACATGGTAGTAAAAA | 59.197 | 38.462 | 14.70 | 0.00 | 0.00 | 1.94 |
2552 | 2968 | 1.600164 | GCTTTTGCACATGCGTTCTCA | 60.600 | 47.619 | 0.00 | 0.00 | 46.58 | 3.27 |
2553 | 2969 | 2.923605 | GCTTTTGCACATGCGTTCTCAT | 60.924 | 45.455 | 0.00 | 0.00 | 46.58 | 2.90 |
2554 | 2970 | 3.311106 | CTTTTGCACATGCGTTCTCATT | 58.689 | 40.909 | 0.00 | 0.00 | 45.83 | 2.57 |
2555 | 2971 | 4.475028 | CTTTTGCACATGCGTTCTCATTA | 58.525 | 39.130 | 0.00 | 0.00 | 45.83 | 1.90 |
2564 | 2980 | 6.748658 | CACATGCGTTCTCATTAATTGTGATT | 59.251 | 34.615 | 5.56 | 0.00 | 0.00 | 2.57 |
2686 | 3102 | 0.463654 | TGCAAGGTATCCATCCACGC | 60.464 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2736 | 3155 | 3.776158 | AATGTGGGTGCGCACATT | 58.224 | 50.000 | 38.60 | 29.45 | 44.35 | 2.71 |
2740 | 3159 | 0.595588 | TGTGGGTGCGCACATTTTAG | 59.404 | 50.000 | 38.60 | 0.00 | 0.00 | 1.85 |
2818 | 3237 | 2.432628 | CTGCCGTCGTCAACCCTC | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2822 | 3241 | 2.572284 | CGTCGTCAACCCTCTCCC | 59.428 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2861 | 3280 | 4.785453 | CACCCTCCCCAGCTTCGC | 62.785 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
2872 | 3291 | 1.610673 | AGCTTCGCCTTCCTCCTCA | 60.611 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
2963 | 3382 | 4.803426 | CTCCAGCTCGGTCACGGC | 62.803 | 72.222 | 2.68 | 0.00 | 41.39 | 5.68 |
3012 | 3431 | 5.858581 | CCTTGTTTTCTTTCATGGATTCGAC | 59.141 | 40.000 | 0.00 | 0.00 | 32.78 | 4.20 |
3059 | 3478 | 3.135712 | TGTAGCTTTGTCACCTTCCTTGA | 59.864 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
3102 | 3521 | 1.413077 | GGGTACTGCTAAGCCTTCGAT | 59.587 | 52.381 | 0.00 | 0.00 | 0.00 | 3.59 |
3150 | 3569 | 2.494918 | CTCCCCGTCATCGTCACC | 59.505 | 66.667 | 0.00 | 0.00 | 35.01 | 4.02 |
3153 | 3572 | 2.202570 | CCCGTCATCGTCACCGTC | 60.203 | 66.667 | 0.00 | 0.00 | 35.01 | 4.79 |
3196 | 3615 | 3.055530 | AGTCTCCAAAGAGCACGATCAAT | 60.056 | 43.478 | 0.00 | 0.00 | 40.22 | 2.57 |
3256 | 3675 | 0.038744 | CAGATGAAGGGGCAACACCT | 59.961 | 55.000 | 0.00 | 0.00 | 46.76 | 4.00 |
3260 | 3679 | 1.989706 | TGAAGGGGCAACACCTAAAC | 58.010 | 50.000 | 0.00 | 0.00 | 46.76 | 2.01 |
3262 | 3681 | 0.558712 | AAGGGGCAACACCTAAACCA | 59.441 | 50.000 | 0.00 | 0.00 | 46.76 | 3.67 |
3277 | 3696 | 5.011329 | ACCTAAACCATCTTCGAACAGTACA | 59.989 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3299 | 3718 | 2.550699 | AAATCAAGGGATGGCGCCGA | 62.551 | 55.000 | 23.90 | 11.48 | 32.92 | 5.54 |
3415 | 3834 | 2.280797 | GACAACACCTCCAGCGCA | 60.281 | 61.111 | 11.47 | 0.00 | 0.00 | 6.09 |
3494 | 3913 | 3.688185 | GCTGATCTCATTGTCTTGAAGCA | 59.312 | 43.478 | 0.00 | 0.00 | 29.96 | 3.91 |
3593 | 4012 | 1.553248 | AGCCCGCTACTTGTACAATGA | 59.447 | 47.619 | 9.13 | 0.00 | 0.00 | 2.57 |
3698 | 4117 | 4.848357 | AGCCATGCACAAATAGTTAGAGT | 58.152 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
3737 | 4156 | 9.695526 | CTCTATCTTTTCTATTGTCAGATCAGG | 57.304 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
3743 | 4162 | 7.675161 | TTTCTATTGTCAGATCAGGGATGTA | 57.325 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3776 | 5329 | 7.085052 | ACTAAGTGTGGTGAGTTTTTCTTTC | 57.915 | 36.000 | 0.00 | 0.00 | 0.00 | 2.62 |
3824 | 5378 | 6.149474 | GCTTTCCAAAGTAGCATCAAGTCTAA | 59.851 | 38.462 | 1.14 | 0.00 | 38.28 | 2.10 |
3848 | 5402 | 0.840617 | TGAGGGTGTGTTTGGTAGCA | 59.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
3856 | 5410 | 3.815401 | GTGTGTTTGGTAGCAGTTCTCAT | 59.185 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
3887 | 5441 | 4.042809 | TGGATGTTACCCTTTGAGACATGT | 59.957 | 41.667 | 0.00 | 0.00 | 31.59 | 3.21 |
3891 | 5445 | 4.819630 | TGTTACCCTTTGAGACATGTTGAC | 59.180 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3978 | 5533 | 4.202567 | TGAGCCAAGACTTTATTTGGGAGT | 60.203 | 41.667 | 5.51 | 0.00 | 43.23 | 3.85 |
4001 | 5556 | 4.643334 | TCTGCATCTGATTAAGCATGCTTT | 59.357 | 37.500 | 35.99 | 20.91 | 38.85 | 3.51 |
4060 | 5615 | 3.820467 | TCTGCATCAATGGAGTTTTTCGT | 59.180 | 39.130 | 10.74 | 0.00 | 45.19 | 3.85 |
4065 | 5620 | 2.034053 | TCAATGGAGTTTTTCGTGCCAC | 59.966 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
4114 | 5680 | 5.039920 | TCACTAGCATAAGCATGACCATT | 57.960 | 39.130 | 0.00 | 0.00 | 45.49 | 3.16 |
4173 | 5743 | 1.449423 | ATCACAAGCATACGCCGCA | 60.449 | 52.632 | 0.00 | 0.00 | 39.83 | 5.69 |
4208 | 5778 | 9.308000 | TGGTCCTTACTAATTTTCATTCAACAT | 57.692 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
4248 | 5818 | 2.831526 | ACTAAATTGGGACATGGCAACC | 59.168 | 45.455 | 0.00 | 0.00 | 39.30 | 3.77 |
4255 | 5825 | 1.411501 | GGGACATGGCAACCCACATAT | 60.412 | 52.381 | 18.43 | 0.00 | 45.77 | 1.78 |
4265 | 5835 | 4.875536 | GGCAACCCACATATTTCAAAATCC | 59.124 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
4283 | 5853 | 1.144093 | TCCGTGGAAAAGGACAATGGT | 59.856 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
4310 | 5880 | 1.462426 | GGGAGGGATCTAGAGGGAGA | 58.538 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4318 | 5888 | 1.928480 | TCTAGAGGGAGATGGGAGGT | 58.072 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4337 | 5907 | 2.043801 | GGTAGGATGAGGGAGGCTAGAT | 59.956 | 54.545 | 0.00 | 0.00 | 0.00 | 1.98 |
4410 | 5981 | 2.436115 | GGTGGCGGTGACTAAGGC | 60.436 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
4467 | 6038 | 5.565695 | GTCAGAGTTTAGTCGCTAGAGAAG | 58.434 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
4500 | 6071 | 1.671054 | CCAAAGGTGGCGACGTCAT | 60.671 | 57.895 | 17.16 | 0.00 | 38.35 | 3.06 |
4532 | 6103 | 5.244178 | TGGTAGAGAAACAAGAGGAGAGAAC | 59.756 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4533 | 6104 | 5.244178 | GGTAGAGAAACAAGAGGAGAGAACA | 59.756 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4588 | 6159 | 0.686224 | TCTTCGGGGCCGTTTCTTAA | 59.314 | 50.000 | 0.00 | 0.00 | 40.74 | 1.85 |
4597 | 6168 | 2.750712 | GGCCGTTTCTTAATTAGCACCA | 59.249 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
4605 | 6176 | 0.830648 | TAATTAGCACCAGGAGCGCT | 59.169 | 50.000 | 11.27 | 11.27 | 39.80 | 5.92 |
4614 | 6185 | 1.871080 | CCAGGAGCGCTGGTTATTAG | 58.129 | 55.000 | 18.48 | 0.00 | 37.22 | 1.73 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
11 | 12 | 9.715121 | ACGTTCAATTTTAGAAGTTCTACCATA | 57.285 | 29.630 | 12.25 | 0.00 | 0.00 | 2.74 |
12 | 13 | 8.617290 | ACGTTCAATTTTAGAAGTTCTACCAT | 57.383 | 30.769 | 12.25 | 4.85 | 0.00 | 3.55 |
13 | 14 | 8.339714 | CAACGTTCAATTTTAGAAGTTCTACCA | 58.660 | 33.333 | 12.25 | 2.64 | 0.00 | 3.25 |
14 | 15 | 7.322938 | GCAACGTTCAATTTTAGAAGTTCTACC | 59.677 | 37.037 | 12.25 | 0.00 | 0.00 | 3.18 |
15 | 16 | 7.853929 | TGCAACGTTCAATTTTAGAAGTTCTAC | 59.146 | 33.333 | 12.25 | 0.40 | 0.00 | 2.59 |
16 | 17 | 7.853929 | GTGCAACGTTCAATTTTAGAAGTTCTA | 59.146 | 33.333 | 8.59 | 8.59 | 0.00 | 2.10 |
17 | 18 | 6.691388 | GTGCAACGTTCAATTTTAGAAGTTCT | 59.309 | 34.615 | 10.87 | 10.87 | 0.00 | 3.01 |
18 | 19 | 6.691388 | AGTGCAACGTTCAATTTTAGAAGTTC | 59.309 | 34.615 | 0.00 | 0.00 | 45.86 | 3.01 |
19 | 20 | 6.560711 | AGTGCAACGTTCAATTTTAGAAGTT | 58.439 | 32.000 | 0.00 | 0.00 | 45.86 | 2.66 |
20 | 21 | 6.131544 | AGTGCAACGTTCAATTTTAGAAGT | 57.868 | 33.333 | 0.00 | 0.00 | 45.86 | 3.01 |
21 | 22 | 8.728088 | ATTAGTGCAACGTTCAATTTTAGAAG | 57.272 | 30.769 | 0.00 | 0.00 | 45.86 | 2.85 |
23 | 24 | 9.767684 | CATATTAGTGCAACGTTCAATTTTAGA | 57.232 | 29.630 | 0.00 | 0.00 | 45.86 | 2.10 |
24 | 25 | 9.009327 | CCATATTAGTGCAACGTTCAATTTTAG | 57.991 | 33.333 | 0.00 | 0.00 | 45.86 | 1.85 |
25 | 26 | 8.516234 | ACCATATTAGTGCAACGTTCAATTTTA | 58.484 | 29.630 | 0.00 | 0.00 | 45.86 | 1.52 |
26 | 27 | 7.375053 | ACCATATTAGTGCAACGTTCAATTTT | 58.625 | 30.769 | 0.00 | 0.00 | 45.86 | 1.82 |
27 | 28 | 6.919721 | ACCATATTAGTGCAACGTTCAATTT | 58.080 | 32.000 | 0.00 | 0.00 | 45.86 | 1.82 |
28 | 29 | 6.509418 | ACCATATTAGTGCAACGTTCAATT | 57.491 | 33.333 | 0.00 | 0.00 | 45.86 | 2.32 |
29 | 30 | 6.321717 | CAACCATATTAGTGCAACGTTCAAT | 58.678 | 36.000 | 0.00 | 1.82 | 45.86 | 2.57 |
30 | 31 | 5.694816 | CAACCATATTAGTGCAACGTTCAA | 58.305 | 37.500 | 0.00 | 0.00 | 45.86 | 2.69 |
31 | 32 | 4.378978 | GCAACCATATTAGTGCAACGTTCA | 60.379 | 41.667 | 0.00 | 0.00 | 45.86 | 3.18 |
32 | 33 | 4.095610 | GCAACCATATTAGTGCAACGTTC | 58.904 | 43.478 | 0.00 | 0.00 | 45.86 | 3.95 |
33 | 34 | 3.756434 | AGCAACCATATTAGTGCAACGTT | 59.244 | 39.130 | 0.00 | 0.00 | 45.86 | 3.99 |
34 | 35 | 3.343617 | AGCAACCATATTAGTGCAACGT | 58.656 | 40.909 | 0.00 | 0.00 | 45.86 | 3.99 |
35 | 36 | 5.478233 | TTAGCAACCATATTAGTGCAACG | 57.522 | 39.130 | 0.00 | 0.00 | 45.86 | 4.10 |
36 | 37 | 7.312899 | AGTTTTAGCAACCATATTAGTGCAAC | 58.687 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
37 | 38 | 7.461182 | AGTTTTAGCAACCATATTAGTGCAA | 57.539 | 32.000 | 0.00 | 0.00 | 0.00 | 4.08 |
38 | 39 | 7.461182 | AAGTTTTAGCAACCATATTAGTGCA | 57.539 | 32.000 | 0.00 | 0.00 | 0.00 | 4.57 |
39 | 40 | 8.757164 | AAAAGTTTTAGCAACCATATTAGTGC | 57.243 | 30.769 | 0.00 | 0.00 | 0.00 | 4.40 |
62 | 63 | 6.241645 | ACATTCCTTTGTCCCAAAACAAAAA | 58.758 | 32.000 | 4.04 | 0.00 | 45.67 | 1.94 |
63 | 64 | 5.810095 | ACATTCCTTTGTCCCAAAACAAAA | 58.190 | 33.333 | 4.04 | 0.00 | 45.67 | 2.44 |
64 | 65 | 5.428184 | ACATTCCTTTGTCCCAAAACAAA | 57.572 | 34.783 | 2.60 | 2.60 | 44.59 | 2.83 |
65 | 66 | 5.428184 | AACATTCCTTTGTCCCAAAACAA | 57.572 | 34.783 | 0.00 | 0.00 | 37.37 | 2.83 |
66 | 67 | 6.739331 | ATAACATTCCTTTGTCCCAAAACA | 57.261 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
67 | 68 | 8.117813 | TCTATAACATTCCTTTGTCCCAAAAC | 57.882 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
68 | 69 | 8.713708 | TTCTATAACATTCCTTTGTCCCAAAA | 57.286 | 30.769 | 0.00 | 0.00 | 0.00 | 2.44 |
69 | 70 | 8.713708 | TTTCTATAACATTCCTTTGTCCCAAA | 57.286 | 30.769 | 0.00 | 0.00 | 0.00 | 3.28 |
70 | 71 | 8.713708 | TTTTCTATAACATTCCTTTGTCCCAA | 57.286 | 30.769 | 0.00 | 0.00 | 0.00 | 4.12 |
71 | 72 | 8.713708 | TTTTTCTATAACATTCCTTTGTCCCA | 57.286 | 30.769 | 0.00 | 0.00 | 0.00 | 4.37 |
93 | 94 | 9.612066 | TTAAAGAATTCTTGAATGGCAGTTTTT | 57.388 | 25.926 | 21.15 | 3.28 | 36.12 | 1.94 |
94 | 95 | 9.783081 | ATTAAAGAATTCTTGAATGGCAGTTTT | 57.217 | 25.926 | 24.42 | 7.49 | 36.05 | 2.43 |
95 | 96 | 9.783081 | AATTAAAGAATTCTTGAATGGCAGTTT | 57.217 | 25.926 | 25.34 | 10.64 | 37.17 | 2.66 |
96 | 97 | 9.211485 | CAATTAAAGAATTCTTGAATGGCAGTT | 57.789 | 29.630 | 25.34 | 11.23 | 37.17 | 3.16 |
97 | 98 | 7.332678 | GCAATTAAAGAATTCTTGAATGGCAGT | 59.667 | 33.333 | 34.50 | 17.97 | 46.35 | 4.40 |
98 | 99 | 7.463648 | CGCAATTAAAGAATTCTTGAATGGCAG | 60.464 | 37.037 | 36.13 | 28.82 | 46.99 | 4.85 |
99 | 100 | 6.310956 | CGCAATTAAAGAATTCTTGAATGGCA | 59.689 | 34.615 | 36.13 | 14.57 | 46.99 | 4.92 |
100 | 101 | 6.311200 | ACGCAATTAAAGAATTCTTGAATGGC | 59.689 | 34.615 | 31.95 | 31.95 | 44.80 | 4.40 |
101 | 102 | 7.816945 | ACGCAATTAAAGAATTCTTGAATGG | 57.183 | 32.000 | 25.34 | 23.55 | 37.17 | 3.16 |
102 | 103 | 8.164153 | CCAACGCAATTAAAGAATTCTTGAATG | 58.836 | 33.333 | 25.34 | 20.06 | 37.17 | 2.67 |
103 | 104 | 8.087750 | TCCAACGCAATTAAAGAATTCTTGAAT | 58.912 | 29.630 | 20.92 | 20.92 | 38.39 | 2.57 |
104 | 105 | 7.429633 | TCCAACGCAATTAAAGAATTCTTGAA | 58.570 | 30.769 | 21.15 | 19.71 | 36.12 | 2.69 |
105 | 106 | 6.976088 | TCCAACGCAATTAAAGAATTCTTGA | 58.024 | 32.000 | 21.15 | 11.48 | 36.12 | 3.02 |
106 | 107 | 7.382218 | AGTTCCAACGCAATTAAAGAATTCTTG | 59.618 | 33.333 | 21.15 | 10.31 | 36.12 | 3.02 |
107 | 108 | 7.433680 | AGTTCCAACGCAATTAAAGAATTCTT | 58.566 | 30.769 | 15.11 | 15.11 | 32.73 | 2.52 |
108 | 109 | 6.981722 | AGTTCCAACGCAATTAAAGAATTCT | 58.018 | 32.000 | 0.88 | 0.88 | 32.73 | 2.40 |
109 | 110 | 7.637709 | AAGTTCCAACGCAATTAAAGAATTC | 57.362 | 32.000 | 0.00 | 0.00 | 32.73 | 2.17 |
110 | 111 | 7.708752 | TCAAAGTTCCAACGCAATTAAAGAATT | 59.291 | 29.630 | 0.00 | 0.00 | 35.56 | 2.17 |
111 | 112 | 7.169140 | GTCAAAGTTCCAACGCAATTAAAGAAT | 59.831 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
112 | 113 | 6.474102 | GTCAAAGTTCCAACGCAATTAAAGAA | 59.526 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
113 | 114 | 5.974751 | GTCAAAGTTCCAACGCAATTAAAGA | 59.025 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
114 | 115 | 5.977129 | AGTCAAAGTTCCAACGCAATTAAAG | 59.023 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
115 | 116 | 5.897050 | AGTCAAAGTTCCAACGCAATTAAA | 58.103 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
116 | 117 | 5.508200 | AGTCAAAGTTCCAACGCAATTAA | 57.492 | 34.783 | 0.00 | 0.00 | 0.00 | 1.40 |
117 | 118 | 5.163602 | ACAAGTCAAAGTTCCAACGCAATTA | 60.164 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
118 | 119 | 4.111916 | CAAGTCAAAGTTCCAACGCAATT | 58.888 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
119 | 120 | 3.130340 | ACAAGTCAAAGTTCCAACGCAAT | 59.870 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
120 | 121 | 2.490115 | ACAAGTCAAAGTTCCAACGCAA | 59.510 | 40.909 | 0.00 | 0.00 | 0.00 | 4.85 |
121 | 122 | 2.088423 | ACAAGTCAAAGTTCCAACGCA | 58.912 | 42.857 | 0.00 | 0.00 | 0.00 | 5.24 |
122 | 123 | 2.844122 | ACAAGTCAAAGTTCCAACGC | 57.156 | 45.000 | 0.00 | 0.00 | 0.00 | 4.84 |
123 | 124 | 6.055231 | TCATTACAAGTCAAAGTTCCAACG | 57.945 | 37.500 | 0.00 | 0.00 | 0.00 | 4.10 |
124 | 125 | 6.363357 | GCATCATTACAAGTCAAAGTTCCAAC | 59.637 | 38.462 | 0.00 | 0.00 | 0.00 | 3.77 |
125 | 126 | 6.265196 | AGCATCATTACAAGTCAAAGTTCCAA | 59.735 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
126 | 127 | 5.769662 | AGCATCATTACAAGTCAAAGTTCCA | 59.230 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
127 | 128 | 6.259550 | AGCATCATTACAAGTCAAAGTTCC | 57.740 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
128 | 129 | 6.150140 | AGGAGCATCATTACAAGTCAAAGTTC | 59.850 | 38.462 | 0.00 | 0.00 | 36.25 | 3.01 |
129 | 130 | 6.006449 | AGGAGCATCATTACAAGTCAAAGTT | 58.994 | 36.000 | 0.00 | 0.00 | 36.25 | 2.66 |
130 | 131 | 5.564550 | AGGAGCATCATTACAAGTCAAAGT | 58.435 | 37.500 | 0.00 | 0.00 | 36.25 | 2.66 |
131 | 132 | 5.879223 | AGAGGAGCATCATTACAAGTCAAAG | 59.121 | 40.000 | 0.00 | 0.00 | 36.25 | 2.77 |
132 | 133 | 5.809001 | AGAGGAGCATCATTACAAGTCAAA | 58.191 | 37.500 | 0.00 | 0.00 | 36.25 | 2.69 |
133 | 134 | 5.426689 | AGAGGAGCATCATTACAAGTCAA | 57.573 | 39.130 | 0.00 | 0.00 | 36.25 | 3.18 |
134 | 135 | 5.658634 | AGTAGAGGAGCATCATTACAAGTCA | 59.341 | 40.000 | 0.00 | 0.00 | 36.25 | 3.41 |
135 | 136 | 6.155475 | AGTAGAGGAGCATCATTACAAGTC | 57.845 | 41.667 | 0.00 | 0.00 | 36.25 | 3.01 |
136 | 137 | 6.552445 | AAGTAGAGGAGCATCATTACAAGT | 57.448 | 37.500 | 0.00 | 0.00 | 36.25 | 3.16 |
137 | 138 | 8.948631 | TTTAAGTAGAGGAGCATCATTACAAG | 57.051 | 34.615 | 0.00 | 0.00 | 36.25 | 3.16 |
138 | 139 | 9.383519 | CTTTTAAGTAGAGGAGCATCATTACAA | 57.616 | 33.333 | 0.00 | 0.00 | 36.25 | 2.41 |
139 | 140 | 8.758829 | TCTTTTAAGTAGAGGAGCATCATTACA | 58.241 | 33.333 | 0.00 | 0.00 | 36.25 | 2.41 |
140 | 141 | 9.601217 | TTCTTTTAAGTAGAGGAGCATCATTAC | 57.399 | 33.333 | 0.00 | 0.00 | 36.25 | 1.89 |
141 | 142 | 9.601217 | GTTCTTTTAAGTAGAGGAGCATCATTA | 57.399 | 33.333 | 0.00 | 0.00 | 36.25 | 1.90 |
142 | 143 | 8.325046 | AGTTCTTTTAAGTAGAGGAGCATCATT | 58.675 | 33.333 | 0.00 | 0.00 | 36.25 | 2.57 |
143 | 144 | 7.856415 | AGTTCTTTTAAGTAGAGGAGCATCAT | 58.144 | 34.615 | 0.00 | 0.00 | 36.25 | 2.45 |
144 | 145 | 7.246171 | AGTTCTTTTAAGTAGAGGAGCATCA | 57.754 | 36.000 | 0.00 | 0.00 | 36.25 | 3.07 |
145 | 146 | 9.654663 | TTTAGTTCTTTTAAGTAGAGGAGCATC | 57.345 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
147 | 148 | 9.269453 | GTTTTAGTTCTTTTAAGTAGAGGAGCA | 57.731 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
148 | 149 | 9.491675 | AGTTTTAGTTCTTTTAAGTAGAGGAGC | 57.508 | 33.333 | 0.00 | 0.00 | 0.00 | 4.70 |
154 | 155 | 9.508495 | CGCGTAAGTTTTAGTTCTTTTAAGTAG | 57.492 | 33.333 | 0.00 | 0.00 | 41.68 | 2.57 |
155 | 156 | 8.487176 | CCGCGTAAGTTTTAGTTCTTTTAAGTA | 58.513 | 33.333 | 4.92 | 0.00 | 41.68 | 2.24 |
156 | 157 | 7.224557 | TCCGCGTAAGTTTTAGTTCTTTTAAGT | 59.775 | 33.333 | 4.92 | 0.00 | 41.68 | 2.24 |
157 | 158 | 7.566709 | TCCGCGTAAGTTTTAGTTCTTTTAAG | 58.433 | 34.615 | 4.92 | 0.00 | 41.68 | 1.85 |
158 | 159 | 7.475771 | TCCGCGTAAGTTTTAGTTCTTTTAA | 57.524 | 32.000 | 4.92 | 0.00 | 41.68 | 1.52 |
159 | 160 | 7.475771 | TTCCGCGTAAGTTTTAGTTCTTTTA | 57.524 | 32.000 | 4.92 | 0.00 | 41.68 | 1.52 |
160 | 161 | 5.989551 | TCCGCGTAAGTTTTAGTTCTTTT | 57.010 | 34.783 | 4.92 | 0.00 | 41.68 | 2.27 |
161 | 162 | 5.559608 | GCTTCCGCGTAAGTTTTAGTTCTTT | 60.560 | 40.000 | 13.22 | 0.00 | 41.68 | 2.52 |
162 | 163 | 4.084171 | GCTTCCGCGTAAGTTTTAGTTCTT | 60.084 | 41.667 | 13.22 | 0.00 | 41.68 | 2.52 |
163 | 164 | 3.431233 | GCTTCCGCGTAAGTTTTAGTTCT | 59.569 | 43.478 | 13.22 | 0.00 | 41.68 | 3.01 |
164 | 165 | 3.431233 | AGCTTCCGCGTAAGTTTTAGTTC | 59.569 | 43.478 | 13.22 | 0.00 | 42.32 | 3.01 |
165 | 166 | 3.396560 | AGCTTCCGCGTAAGTTTTAGTT | 58.603 | 40.909 | 13.22 | 0.00 | 42.32 | 2.24 |
166 | 167 | 3.036075 | AGCTTCCGCGTAAGTTTTAGT | 57.964 | 42.857 | 13.22 | 0.00 | 42.32 | 2.24 |
167 | 168 | 5.713822 | AATAGCTTCCGCGTAAGTTTTAG | 57.286 | 39.130 | 13.22 | 0.00 | 42.32 | 1.85 |
168 | 169 | 6.484818 | AAAATAGCTTCCGCGTAAGTTTTA | 57.515 | 33.333 | 13.22 | 4.45 | 42.32 | 1.52 |
169 | 170 | 5.366829 | AAAATAGCTTCCGCGTAAGTTTT | 57.633 | 34.783 | 13.22 | 8.95 | 42.32 | 2.43 |
170 | 171 | 5.640783 | ACTAAAATAGCTTCCGCGTAAGTTT | 59.359 | 36.000 | 13.22 | 7.92 | 42.32 | 2.66 |
171 | 172 | 5.173664 | ACTAAAATAGCTTCCGCGTAAGTT | 58.826 | 37.500 | 13.22 | 9.65 | 42.32 | 2.66 |
172 | 173 | 4.752146 | ACTAAAATAGCTTCCGCGTAAGT | 58.248 | 39.130 | 13.22 | 2.91 | 42.32 | 2.24 |
173 | 174 | 7.404139 | AATACTAAAATAGCTTCCGCGTAAG | 57.596 | 36.000 | 7.12 | 7.12 | 42.32 | 2.34 |
174 | 175 | 7.278424 | ACAAATACTAAAATAGCTTCCGCGTAA | 59.722 | 33.333 | 4.92 | 0.00 | 42.32 | 3.18 |
175 | 176 | 6.757947 | ACAAATACTAAAATAGCTTCCGCGTA | 59.242 | 34.615 | 4.92 | 0.00 | 42.32 | 4.42 |
176 | 177 | 5.583457 | ACAAATACTAAAATAGCTTCCGCGT | 59.417 | 36.000 | 4.92 | 0.00 | 42.32 | 6.01 |
177 | 178 | 6.044512 | ACAAATACTAAAATAGCTTCCGCG | 57.955 | 37.500 | 0.00 | 0.00 | 42.32 | 6.46 |
178 | 179 | 7.694886 | AGAACAAATACTAAAATAGCTTCCGC | 58.305 | 34.615 | 0.00 | 0.00 | 0.00 | 5.54 |
210 | 211 | 9.095065 | GGATGAGTACGAATAAAGCTTTTCTTA | 57.905 | 33.333 | 18.47 | 5.06 | 33.88 | 2.10 |
211 | 212 | 7.824779 | AGGATGAGTACGAATAAAGCTTTTCTT | 59.175 | 33.333 | 18.47 | 11.44 | 36.34 | 2.52 |
212 | 213 | 7.331791 | AGGATGAGTACGAATAAAGCTTTTCT | 58.668 | 34.615 | 18.47 | 4.62 | 0.00 | 2.52 |
213 | 214 | 7.541122 | AGGATGAGTACGAATAAAGCTTTTC | 57.459 | 36.000 | 18.47 | 8.92 | 0.00 | 2.29 |
214 | 215 | 7.494952 | GGTAGGATGAGTACGAATAAAGCTTTT | 59.505 | 37.037 | 18.47 | 0.00 | 0.00 | 2.27 |
215 | 216 | 6.985059 | GGTAGGATGAGTACGAATAAAGCTTT | 59.015 | 38.462 | 17.30 | 17.30 | 0.00 | 3.51 |
216 | 217 | 6.324254 | AGGTAGGATGAGTACGAATAAAGCTT | 59.676 | 38.462 | 0.00 | 0.00 | 0.00 | 3.74 |
217 | 218 | 5.834204 | AGGTAGGATGAGTACGAATAAAGCT | 59.166 | 40.000 | 0.00 | 0.00 | 0.00 | 3.74 |
218 | 219 | 6.086785 | AGGTAGGATGAGTACGAATAAAGC | 57.913 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
219 | 220 | 6.421202 | GCAAGGTAGGATGAGTACGAATAAAG | 59.579 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
220 | 221 | 6.127281 | TGCAAGGTAGGATGAGTACGAATAAA | 60.127 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
221 | 222 | 5.361571 | TGCAAGGTAGGATGAGTACGAATAA | 59.638 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
222 | 223 | 4.891168 | TGCAAGGTAGGATGAGTACGAATA | 59.109 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
223 | 224 | 3.704566 | TGCAAGGTAGGATGAGTACGAAT | 59.295 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
224 | 225 | 3.093814 | TGCAAGGTAGGATGAGTACGAA | 58.906 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
225 | 226 | 2.730382 | TGCAAGGTAGGATGAGTACGA | 58.270 | 47.619 | 0.00 | 0.00 | 0.00 | 3.43 |
226 | 227 | 3.520290 | TTGCAAGGTAGGATGAGTACG | 57.480 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
227 | 228 | 5.086104 | TCTTTGCAAGGTAGGATGAGTAC | 57.914 | 43.478 | 8.56 | 0.00 | 0.00 | 2.73 |
228 | 229 | 5.957771 | ATCTTTGCAAGGTAGGATGAGTA | 57.042 | 39.130 | 8.56 | 0.00 | 0.00 | 2.59 |
229 | 230 | 4.851639 | ATCTTTGCAAGGTAGGATGAGT | 57.148 | 40.909 | 8.56 | 0.00 | 0.00 | 3.41 |
230 | 231 | 5.674525 | TGTATCTTTGCAAGGTAGGATGAG | 58.325 | 41.667 | 8.56 | 0.00 | 0.00 | 2.90 |
231 | 232 | 5.692115 | TGTATCTTTGCAAGGTAGGATGA | 57.308 | 39.130 | 8.56 | 0.00 | 0.00 | 2.92 |
232 | 233 | 5.220931 | GCTTGTATCTTTGCAAGGTAGGATG | 60.221 | 44.000 | 8.56 | 0.00 | 43.44 | 3.51 |
233 | 234 | 4.884164 | GCTTGTATCTTTGCAAGGTAGGAT | 59.116 | 41.667 | 8.56 | 7.17 | 43.44 | 3.24 |
234 | 235 | 4.261801 | GCTTGTATCTTTGCAAGGTAGGA | 58.738 | 43.478 | 8.56 | 0.20 | 43.44 | 2.94 |
235 | 236 | 4.009675 | TGCTTGTATCTTTGCAAGGTAGG | 58.990 | 43.478 | 8.56 | 0.00 | 43.44 | 3.18 |
236 | 237 | 5.627499 | TTGCTTGTATCTTTGCAAGGTAG | 57.373 | 39.130 | 8.56 | 0.00 | 43.44 | 3.18 |
237 | 238 | 5.709631 | TGATTGCTTGTATCTTTGCAAGGTA | 59.290 | 36.000 | 8.56 | 0.00 | 46.37 | 3.08 |
238 | 239 | 4.523943 | TGATTGCTTGTATCTTTGCAAGGT | 59.476 | 37.500 | 8.56 | 0.00 | 46.37 | 3.50 |
239 | 240 | 5.063180 | TGATTGCTTGTATCTTTGCAAGG | 57.937 | 39.130 | 1.35 | 1.35 | 46.37 | 3.61 |
240 | 241 | 6.809689 | TGATTGATTGCTTGTATCTTTGCAAG | 59.190 | 34.615 | 0.00 | 0.00 | 46.37 | 4.01 |
242 | 243 | 6.270156 | TGATTGATTGCTTGTATCTTTGCA | 57.730 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
243 | 244 | 7.585286 | TTTGATTGATTGCTTGTATCTTTGC | 57.415 | 32.000 | 0.00 | 0.00 | 0.00 | 3.68 |
244 | 245 | 8.653338 | CCTTTTGATTGATTGCTTGTATCTTTG | 58.347 | 33.333 | 0.00 | 0.00 | 0.00 | 2.77 |
245 | 246 | 7.820872 | CCCTTTTGATTGATTGCTTGTATCTTT | 59.179 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
246 | 247 | 7.325694 | CCCTTTTGATTGATTGCTTGTATCTT | 58.674 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
247 | 248 | 6.127253 | CCCCTTTTGATTGATTGCTTGTATCT | 60.127 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
248 | 249 | 6.044682 | CCCCTTTTGATTGATTGCTTGTATC | 58.955 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
249 | 250 | 5.721000 | TCCCCTTTTGATTGATTGCTTGTAT | 59.279 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
250 | 251 | 5.083122 | TCCCCTTTTGATTGATTGCTTGTA | 58.917 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
251 | 252 | 3.903090 | TCCCCTTTTGATTGATTGCTTGT | 59.097 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
252 | 253 | 4.540359 | TCCCCTTTTGATTGATTGCTTG | 57.460 | 40.909 | 0.00 | 0.00 | 0.00 | 4.01 |
253 | 254 | 4.624604 | GCATCCCCTTTTGATTGATTGCTT | 60.625 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
254 | 255 | 3.118519 | GCATCCCCTTTTGATTGATTGCT | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
255 | 256 | 3.200483 | GCATCCCCTTTTGATTGATTGC | 58.800 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
256 | 257 | 4.475051 | TGCATCCCCTTTTGATTGATTG | 57.525 | 40.909 | 0.00 | 0.00 | 0.00 | 2.67 |
257 | 258 | 4.141574 | CCATGCATCCCCTTTTGATTGATT | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
258 | 259 | 3.389983 | CCATGCATCCCCTTTTGATTGAT | 59.610 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
259 | 260 | 2.767394 | CCATGCATCCCCTTTTGATTGA | 59.233 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
260 | 261 | 2.767394 | TCCATGCATCCCCTTTTGATTG | 59.233 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
261 | 262 | 3.119009 | TCCATGCATCCCCTTTTGATT | 57.881 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
262 | 263 | 2.852714 | TCCATGCATCCCCTTTTGAT | 57.147 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
263 | 264 | 2.390696 | CATCCATGCATCCCCTTTTGA | 58.609 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
264 | 265 | 1.414919 | CCATCCATGCATCCCCTTTTG | 59.585 | 52.381 | 0.00 | 0.00 | 0.00 | 2.44 |
265 | 266 | 1.291637 | TCCATCCATGCATCCCCTTTT | 59.708 | 47.619 | 0.00 | 0.00 | 0.00 | 2.27 |
266 | 267 | 0.935942 | TCCATCCATGCATCCCCTTT | 59.064 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
267 | 268 | 1.164313 | ATCCATCCATGCATCCCCTT | 58.836 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
268 | 269 | 0.408309 | CATCCATCCATGCATCCCCT | 59.592 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
269 | 270 | 0.613853 | CCATCCATCCATGCATCCCC | 60.614 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
270 | 271 | 0.613853 | CCCATCCATCCATGCATCCC | 60.614 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
271 | 272 | 0.113776 | ACCCATCCATCCATGCATCC | 59.886 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
272 | 273 | 1.254026 | CACCCATCCATCCATGCATC | 58.746 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
273 | 274 | 0.559205 | ACACCCATCCATCCATGCAT | 59.441 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
274 | 275 | 0.396001 | CACACCCATCCATCCATGCA | 60.396 | 55.000 | 0.00 | 0.00 | 0.00 | 3.96 |
275 | 276 | 1.111116 | CCACACCCATCCATCCATGC | 61.111 | 60.000 | 0.00 | 0.00 | 0.00 | 4.06 |
276 | 277 | 0.552363 | TCCACACCCATCCATCCATG | 59.448 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
277 | 278 | 1.426598 | GATCCACACCCATCCATCCAT | 59.573 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
278 | 279 | 0.846015 | GATCCACACCCATCCATCCA | 59.154 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
279 | 280 | 0.250467 | CGATCCACACCCATCCATCC | 60.250 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
280 | 281 | 0.758734 | TCGATCCACACCCATCCATC | 59.241 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
281 | 282 | 1.349026 | GATCGATCCACACCCATCCAT | 59.651 | 52.381 | 14.76 | 0.00 | 0.00 | 3.41 |
282 | 283 | 0.758734 | GATCGATCCACACCCATCCA | 59.241 | 55.000 | 14.76 | 0.00 | 0.00 | 3.41 |
283 | 284 | 0.758734 | TGATCGATCCACACCCATCC | 59.241 | 55.000 | 22.31 | 0.00 | 0.00 | 3.51 |
284 | 285 | 1.869754 | CGTGATCGATCCACACCCATC | 60.870 | 57.143 | 22.31 | 0.00 | 39.71 | 3.51 |
285 | 286 | 0.104855 | CGTGATCGATCCACACCCAT | 59.895 | 55.000 | 22.31 | 0.00 | 39.71 | 4.00 |
286 | 287 | 1.254975 | ACGTGATCGATCCACACCCA | 61.255 | 55.000 | 22.31 | 0.00 | 40.62 | 4.51 |
287 | 288 | 0.806102 | CACGTGATCGATCCACACCC | 60.806 | 60.000 | 22.31 | 0.00 | 40.62 | 4.61 |
288 | 289 | 0.108804 | ACACGTGATCGATCCACACC | 60.109 | 55.000 | 25.01 | 4.77 | 40.62 | 4.16 |
321 | 326 | 2.094286 | GTCATGTCTCACACTCAGAGGG | 60.094 | 54.545 | 0.00 | 0.00 | 33.92 | 4.30 |
325 | 330 | 2.323059 | CGTGTCATGTCTCACACTCAG | 58.677 | 52.381 | 12.10 | 0.00 | 40.74 | 3.35 |
326 | 331 | 1.602920 | GCGTGTCATGTCTCACACTCA | 60.603 | 52.381 | 12.10 | 0.00 | 40.74 | 3.41 |
327 | 332 | 1.063806 | GCGTGTCATGTCTCACACTC | 58.936 | 55.000 | 12.10 | 2.57 | 40.74 | 3.51 |
328 | 333 | 0.664466 | CGCGTGTCATGTCTCACACT | 60.664 | 55.000 | 12.10 | 0.00 | 40.74 | 3.55 |
329 | 334 | 0.939577 | ACGCGTGTCATGTCTCACAC | 60.940 | 55.000 | 12.93 | 10.72 | 39.70 | 3.82 |
330 | 335 | 0.939106 | CACGCGTGTCATGTCTCACA | 60.939 | 55.000 | 30.50 | 1.18 | 34.66 | 3.58 |
331 | 336 | 0.663269 | TCACGCGTGTCATGTCTCAC | 60.663 | 55.000 | 35.74 | 0.79 | 0.00 | 3.51 |
347 | 352 | 0.596577 | TGCGTGTCTACTCCACTCAC | 59.403 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
352 | 357 | 1.689813 | TCCTTTTGCGTGTCTACTCCA | 59.310 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
388 | 393 | 7.565680 | TCCCATCTTTCTTTCTGTTCCTATAC | 58.434 | 38.462 | 0.00 | 0.00 | 0.00 | 1.47 |
399 | 405 | 5.105595 | CCAATCCAACTCCCATCTTTCTTTC | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 2.62 |
413 | 419 | 1.066430 | ACGCACGTATCCAATCCAACT | 60.066 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
489 | 550 | 3.879295 | TCCTACTATACACACGCCAGTAC | 59.121 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
494 | 555 | 2.553172 | CTCCTCCTACTATACACACGCC | 59.447 | 54.545 | 0.00 | 0.00 | 0.00 | 5.68 |
495 | 556 | 3.212685 | ACTCCTCCTACTATACACACGC | 58.787 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
509 | 584 | 3.799420 | CGTACACGTACTACTACTCCTCC | 59.201 | 52.174 | 5.84 | 0.00 | 34.04 | 4.30 |
540 | 617 | 9.417561 | TCTCCTCTCCTCGATTTATTTTACTTA | 57.582 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
541 | 618 | 8.307582 | TCTCCTCTCCTCGATTTATTTTACTT | 57.692 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
542 | 619 | 7.899648 | TCTCCTCTCCTCGATTTATTTTACT | 57.100 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
543 | 620 | 7.654116 | CCTTCTCCTCTCCTCGATTTATTTTAC | 59.346 | 40.741 | 0.00 | 0.00 | 0.00 | 2.01 |
544 | 621 | 7.563924 | TCCTTCTCCTCTCCTCGATTTATTTTA | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
545 | 622 | 6.384305 | TCCTTCTCCTCTCCTCGATTTATTTT | 59.616 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
553 | 630 | 0.107606 | CGTCCTTCTCCTCTCCTCGA | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
614 | 752 | 4.351054 | GTGGGTGGGAGGCCACTG | 62.351 | 72.222 | 5.01 | 0.00 | 40.24 | 3.66 |
709 | 848 | 2.176055 | CGACCGGACACGAGACAG | 59.824 | 66.667 | 9.46 | 0.00 | 44.60 | 3.51 |
710 | 849 | 4.034258 | GCGACCGGACACGAGACA | 62.034 | 66.667 | 9.46 | 0.00 | 44.60 | 3.41 |
714 | 853 | 3.429141 | GAGAGCGACCGGACACGA | 61.429 | 66.667 | 9.46 | 0.00 | 44.60 | 4.35 |
721 | 860 | 4.544689 | CGGCAGAGAGAGCGACCG | 62.545 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
761 | 913 | 2.930040 | CCTCATCGTTGTGCTAATTCGT | 59.070 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
762 | 914 | 2.285834 | GCCTCATCGTTGTGCTAATTCG | 60.286 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
763 | 915 | 2.032178 | GGCCTCATCGTTGTGCTAATTC | 59.968 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
764 | 916 | 2.017049 | GGCCTCATCGTTGTGCTAATT | 58.983 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
765 | 917 | 1.065491 | TGGCCTCATCGTTGTGCTAAT | 60.065 | 47.619 | 3.32 | 0.00 | 0.00 | 1.73 |
766 | 918 | 0.323302 | TGGCCTCATCGTTGTGCTAA | 59.677 | 50.000 | 3.32 | 0.00 | 0.00 | 3.09 |
767 | 919 | 0.108186 | CTGGCCTCATCGTTGTGCTA | 60.108 | 55.000 | 3.32 | 4.52 | 0.00 | 3.49 |
771 | 923 | 2.045926 | GGCTGGCCTCATCGTTGT | 60.046 | 61.111 | 3.32 | 0.00 | 0.00 | 3.32 |
772 | 924 | 2.110967 | CAGGCTGGCCTCATCGTTG | 61.111 | 63.158 | 11.60 | 0.00 | 46.28 | 4.10 |
773 | 925 | 2.270205 | CAGGCTGGCCTCATCGTT | 59.730 | 61.111 | 11.60 | 0.00 | 46.28 | 3.85 |
776 | 930 | 2.191641 | GGTCAGGCTGGCCTCATC | 59.808 | 66.667 | 30.44 | 3.45 | 46.28 | 2.92 |
784 | 938 | 2.181021 | GTACGTCCGGTCAGGCTG | 59.819 | 66.667 | 8.58 | 8.58 | 40.77 | 4.85 |
835 | 1010 | 0.461163 | TTGGTACGCGTATGCATGCT | 60.461 | 50.000 | 23.56 | 7.07 | 42.97 | 3.79 |
873 | 1052 | 4.225703 | GGGCATGCCGGGAATTGC | 62.226 | 66.667 | 29.90 | 12.70 | 36.85 | 3.56 |
875 | 1054 | 4.440829 | ACGGGCATGCCGGGAATT | 62.441 | 61.111 | 38.05 | 21.04 | 40.25 | 2.17 |
1009 | 1193 | 1.456705 | CGGAGAGGGAGGGAGGAAG | 60.457 | 68.421 | 0.00 | 0.00 | 0.00 | 3.46 |
1122 | 1336 | 0.043940 | ATCAGGACAAGGAGGAGGCT | 59.956 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
1125 | 1339 | 2.417924 | CGACAATCAGGACAAGGAGGAG | 60.418 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
1341 | 1558 | 4.030977 | CGGAACCTACATTTACGAACGAAG | 59.969 | 45.833 | 0.14 | 0.00 | 0.00 | 3.79 |
1345 | 1562 | 2.028404 | CGCGGAACCTACATTTACGAAC | 59.972 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1385 | 1603 | 2.587679 | GCACACGCACGTTACGGAA | 61.588 | 57.895 | 10.20 | 0.00 | 38.36 | 4.30 |
1387 | 1605 | 4.403706 | CGCACACGCACGTTACGG | 62.404 | 66.667 | 10.20 | 0.00 | 38.40 | 4.02 |
1495 | 1739 | 3.147595 | CATGGAGAGGACGGGCGA | 61.148 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
1511 | 1755 | 2.449518 | TGTCCTCCTGGTTGGGCA | 60.450 | 61.111 | 10.68 | 10.68 | 35.35 | 5.36 |
1558 | 1802 | 5.215252 | TCAAAGAGAAGAAGGTGTAGGTG | 57.785 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1600 | 1859 | 7.067859 | TCAATGAATCTTGAGATGGAATTCCAC | 59.932 | 37.037 | 29.32 | 21.12 | 38.42 | 4.02 |
1601 | 1860 | 7.067859 | GTCAATGAATCTTGAGATGGAATTCCA | 59.932 | 37.037 | 28.92 | 28.92 | 41.97 | 3.53 |
1602 | 1861 | 7.424001 | GTCAATGAATCTTGAGATGGAATTCC | 58.576 | 38.462 | 18.17 | 18.17 | 35.88 | 3.01 |
1603 | 1862 | 7.011763 | TCGTCAATGAATCTTGAGATGGAATTC | 59.988 | 37.037 | 0.00 | 0.00 | 35.88 | 2.17 |
1604 | 1863 | 6.825213 | TCGTCAATGAATCTTGAGATGGAATT | 59.175 | 34.615 | 0.00 | 0.00 | 35.88 | 2.17 |
1605 | 1864 | 6.351711 | TCGTCAATGAATCTTGAGATGGAAT | 58.648 | 36.000 | 0.00 | 0.00 | 35.88 | 3.01 |
1606 | 1865 | 5.733676 | TCGTCAATGAATCTTGAGATGGAA | 58.266 | 37.500 | 0.00 | 0.00 | 35.88 | 3.53 |
1607 | 1866 | 5.343307 | TCGTCAATGAATCTTGAGATGGA | 57.657 | 39.130 | 0.00 | 0.00 | 35.88 | 3.41 |
1608 | 1867 | 6.427974 | CAATCGTCAATGAATCTTGAGATGG | 58.572 | 40.000 | 0.00 | 0.00 | 35.88 | 3.51 |
1609 | 1868 | 5.907945 | GCAATCGTCAATGAATCTTGAGATG | 59.092 | 40.000 | 0.00 | 0.00 | 35.88 | 2.90 |
1610 | 1869 | 5.821470 | AGCAATCGTCAATGAATCTTGAGAT | 59.179 | 36.000 | 4.71 | 0.00 | 35.88 | 2.75 |
1611 | 1870 | 5.181009 | AGCAATCGTCAATGAATCTTGAGA | 58.819 | 37.500 | 4.71 | 0.00 | 35.88 | 3.27 |
1612 | 1871 | 5.293814 | AGAGCAATCGTCAATGAATCTTGAG | 59.706 | 40.000 | 4.71 | 0.00 | 35.88 | 3.02 |
1613 | 1872 | 5.181009 | AGAGCAATCGTCAATGAATCTTGA | 58.819 | 37.500 | 4.71 | 0.00 | 32.84 | 3.02 |
1614 | 1873 | 5.064325 | TGAGAGCAATCGTCAATGAATCTTG | 59.936 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1615 | 1874 | 5.181009 | TGAGAGCAATCGTCAATGAATCTT | 58.819 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
1616 | 1875 | 4.763073 | TGAGAGCAATCGTCAATGAATCT | 58.237 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
1617 | 1876 | 5.261661 | GTTGAGAGCAATCGTCAATGAATC | 58.738 | 41.667 | 0.00 | 0.00 | 36.22 | 2.52 |
1618 | 1877 | 4.201753 | CGTTGAGAGCAATCGTCAATGAAT | 60.202 | 41.667 | 0.00 | 0.00 | 38.83 | 2.57 |
1619 | 1878 | 3.123453 | CGTTGAGAGCAATCGTCAATGAA | 59.877 | 43.478 | 0.00 | 0.00 | 38.83 | 2.57 |
1620 | 1879 | 2.667969 | CGTTGAGAGCAATCGTCAATGA | 59.332 | 45.455 | 0.00 | 0.00 | 38.83 | 2.57 |
1621 | 1880 | 2.413112 | ACGTTGAGAGCAATCGTCAATG | 59.587 | 45.455 | 0.00 | 0.00 | 41.19 | 2.82 |
1622 | 1881 | 2.413112 | CACGTTGAGAGCAATCGTCAAT | 59.587 | 45.455 | 0.00 | 0.00 | 38.62 | 2.57 |
1623 | 1882 | 1.792367 | CACGTTGAGAGCAATCGTCAA | 59.208 | 47.619 | 0.00 | 0.00 | 38.62 | 3.18 |
1624 | 1883 | 1.418373 | CACGTTGAGAGCAATCGTCA | 58.582 | 50.000 | 0.00 | 0.00 | 38.62 | 4.35 |
1625 | 1884 | 0.716108 | CCACGTTGAGAGCAATCGTC | 59.284 | 55.000 | 0.00 | 0.00 | 38.62 | 4.20 |
1626 | 1885 | 0.317160 | TCCACGTTGAGAGCAATCGT | 59.683 | 50.000 | 0.00 | 0.00 | 40.06 | 3.73 |
1627 | 1886 | 0.716108 | GTCCACGTTGAGAGCAATCG | 59.284 | 55.000 | 0.00 | 0.00 | 36.22 | 3.34 |
1628 | 1887 | 0.716108 | CGTCCACGTTGAGAGCAATC | 59.284 | 55.000 | 0.00 | 0.00 | 36.22 | 2.67 |
1629 | 1888 | 0.317160 | TCGTCCACGTTGAGAGCAAT | 59.683 | 50.000 | 0.00 | 0.00 | 40.80 | 3.56 |
1630 | 1889 | 0.317160 | ATCGTCCACGTTGAGAGCAA | 59.683 | 50.000 | 0.00 | 0.00 | 40.80 | 3.91 |
1631 | 1890 | 0.388520 | CATCGTCCACGTTGAGAGCA | 60.389 | 55.000 | 4.48 | 0.00 | 40.40 | 4.26 |
1632 | 1891 | 1.687494 | GCATCGTCCACGTTGAGAGC | 61.687 | 60.000 | 13.12 | 0.87 | 40.40 | 4.09 |
1633 | 1892 | 0.388520 | TGCATCGTCCACGTTGAGAG | 60.389 | 55.000 | 13.12 | 0.00 | 40.40 | 3.20 |
1749 | 2012 | 1.700029 | CACGTACGAATGCGGTGAC | 59.300 | 57.895 | 24.41 | 0.00 | 43.17 | 3.67 |
1804 | 2195 | 4.926238 | GTGATTAGATTAGATGGCGGTGAG | 59.074 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
1805 | 2196 | 4.262463 | GGTGATTAGATTAGATGGCGGTGA | 60.262 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
1806 | 2197 | 3.997021 | GGTGATTAGATTAGATGGCGGTG | 59.003 | 47.826 | 0.00 | 0.00 | 0.00 | 4.94 |
1807 | 2198 | 3.646162 | TGGTGATTAGATTAGATGGCGGT | 59.354 | 43.478 | 0.00 | 0.00 | 0.00 | 5.68 |
2059 | 2470 | 0.462581 | GGCGATCATGTCCTTGAGCA | 60.463 | 55.000 | 0.00 | 0.00 | 31.54 | 4.26 |
2145 | 2556 | 0.877071 | TCGACAACGTAGTCCCACTC | 59.123 | 55.000 | 0.00 | 0.00 | 45.00 | 3.51 |
2159 | 2570 | 0.239082 | ACGTACATTGCGTCTCGACA | 59.761 | 50.000 | 0.00 | 0.00 | 38.23 | 4.35 |
2211 | 2627 | 2.787994 | AGAAATGATCCATGGCGATCC | 58.212 | 47.619 | 6.96 | 0.00 | 38.32 | 3.36 |
2246 | 2662 | 7.948137 | TGCACGCACATTTATTTTATTTTCTC | 58.052 | 30.769 | 0.00 | 0.00 | 0.00 | 2.87 |
2247 | 2663 | 7.812191 | TCTGCACGCACATTTATTTTATTTTCT | 59.188 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
2248 | 2664 | 7.892731 | GTCTGCACGCACATTTATTTTATTTTC | 59.107 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2322 | 2738 | 1.839424 | CCTTGGAGTCCATGGGTTTC | 58.161 | 55.000 | 28.91 | 7.18 | 42.84 | 2.78 |
2349 | 2765 | 1.602311 | AGAAGTTGAGCAGCACAAGG | 58.398 | 50.000 | 5.39 | 0.00 | 0.00 | 3.61 |
2352 | 2768 | 1.942657 | GTGAAGAAGTTGAGCAGCACA | 59.057 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
2507 | 2923 | 8.192774 | GCCAAAAAGTAAACTAGTGTAGGTTTT | 58.807 | 33.333 | 0.00 | 1.93 | 36.93 | 2.43 |
2508 | 2924 | 7.558807 | AGCCAAAAAGTAAACTAGTGTAGGTTT | 59.441 | 33.333 | 0.00 | 0.00 | 36.93 | 3.27 |
2509 | 2925 | 7.058525 | AGCCAAAAAGTAAACTAGTGTAGGTT | 58.941 | 34.615 | 0.00 | 0.00 | 39.46 | 3.50 |
2510 | 2926 | 6.598503 | AGCCAAAAAGTAAACTAGTGTAGGT | 58.401 | 36.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2525 | 2941 | 2.600320 | CGCATGTGCAAAAGCCAAAAAG | 60.600 | 45.455 | 5.77 | 0.00 | 42.21 | 2.27 |
2546 | 2962 | 7.646922 | GCCATCAGAATCACAATTAATGAGAAC | 59.353 | 37.037 | 0.00 | 0.00 | 32.20 | 3.01 |
2552 | 2968 | 6.041637 | AGCATGCCATCAGAATCACAATTAAT | 59.958 | 34.615 | 15.66 | 0.00 | 0.00 | 1.40 |
2553 | 2969 | 5.361571 | AGCATGCCATCAGAATCACAATTAA | 59.638 | 36.000 | 15.66 | 0.00 | 0.00 | 1.40 |
2554 | 2970 | 4.891168 | AGCATGCCATCAGAATCACAATTA | 59.109 | 37.500 | 15.66 | 0.00 | 0.00 | 1.40 |
2555 | 2971 | 3.704566 | AGCATGCCATCAGAATCACAATT | 59.295 | 39.130 | 15.66 | 0.00 | 0.00 | 2.32 |
2564 | 2980 | 0.811219 | GCACGTAGCATGCCATCAGA | 60.811 | 55.000 | 15.66 | 0.00 | 44.79 | 3.27 |
2686 | 3102 | 3.331150 | TCGTACAAACATGTGGCTTAGG | 58.669 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
2736 | 3155 | 8.742777 | ACATATGTTAGTCGGTACAAGACTAAA | 58.257 | 33.333 | 28.90 | 22.43 | 0.00 | 1.85 |
2740 | 3159 | 7.823149 | AAACATATGTTAGTCGGTACAAGAC | 57.177 | 36.000 | 21.07 | 11.40 | 37.25 | 3.01 |
2861 | 3280 | 1.555075 | TGATTTCGGTGAGGAGGAAGG | 59.445 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
2872 | 3291 | 1.134729 | GCCAATGCCAATGATTTCGGT | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
3012 | 3431 | 1.041437 | GGATAGAGAAGGGTCCACGG | 58.959 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
3059 | 3478 | 3.728373 | GGGCCATGAAGACGGGGT | 61.728 | 66.667 | 4.39 | 0.00 | 0.00 | 4.95 |
3086 | 3505 | 1.410882 | GAGGATCGAAGGCTTAGCAGT | 59.589 | 52.381 | 6.53 | 0.00 | 0.00 | 4.40 |
3150 | 3569 | 3.284323 | TCTTTGGAGACTTCTTCGACG | 57.716 | 47.619 | 0.00 | 0.00 | 0.00 | 5.12 |
3153 | 3572 | 5.293560 | ACTTCTTCTTTGGAGACTTCTTCG | 58.706 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
3196 | 3615 | 3.324556 | TGAGTTCATCCACTGACATCACA | 59.675 | 43.478 | 0.00 | 0.00 | 32.17 | 3.58 |
3256 | 3675 | 5.221481 | TGGTGTACTGTTCGAAGATGGTTTA | 60.221 | 40.000 | 0.00 | 0.00 | 35.04 | 2.01 |
3260 | 3679 | 3.313012 | TGGTGTACTGTTCGAAGATGG | 57.687 | 47.619 | 0.00 | 0.00 | 35.04 | 3.51 |
3262 | 3681 | 5.547465 | TGATTTGGTGTACTGTTCGAAGAT | 58.453 | 37.500 | 0.00 | 0.00 | 35.04 | 2.40 |
3277 | 3696 | 1.322538 | GCGCCATCCCTTGATTTGGT | 61.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3299 | 3718 | 1.549170 | AGTACCGTTCGGAGATGCTTT | 59.451 | 47.619 | 18.28 | 0.00 | 35.04 | 3.51 |
3400 | 3819 | 3.730761 | GCTGCGCTGGAGGTGTTG | 61.731 | 66.667 | 16.47 | 0.00 | 0.00 | 3.33 |
3415 | 3834 | 4.162690 | GTCTTGGGCCGGATCGCT | 62.163 | 66.667 | 5.05 | 0.00 | 0.00 | 4.93 |
3593 | 4012 | 1.100510 | TCAGCTTGACTATACGCCGT | 58.899 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
3650 | 4069 | 2.093288 | ACCGATGATGCAAGAGACATGT | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
3722 | 4141 | 9.429359 | GTTTATACATCCCTGATCTGACAATAG | 57.571 | 37.037 | 0.38 | 0.00 | 0.00 | 1.73 |
3737 | 4156 | 7.822822 | ACCACACTTAGTTCAGTTTATACATCC | 59.177 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3743 | 4162 | 6.827727 | ACTCACCACACTTAGTTCAGTTTAT | 58.172 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3776 | 5329 | 5.934625 | GCTCATAGTATAATCCCACCAACAG | 59.065 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3824 | 5378 | 2.815158 | ACCAAACACACCCTCAGTTTT | 58.185 | 42.857 | 0.00 | 0.00 | 33.54 | 2.43 |
3856 | 5410 | 3.060479 | AGGGTAACATCCATGCTAGGA | 57.940 | 47.619 | 0.13 | 0.13 | 43.01 | 2.94 |
3887 | 5441 | 0.250252 | TTCAGCACATCCGCAGTCAA | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3891 | 5445 | 1.655484 | TGTATTCAGCACATCCGCAG | 58.345 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
3978 | 5533 | 3.816994 | AGCATGCTTAATCAGATGCAGA | 58.183 | 40.909 | 16.30 | 0.00 | 43.04 | 4.26 |
4001 | 5556 | 4.481368 | ACTACCAAATGTAATCTCGGCA | 57.519 | 40.909 | 0.00 | 0.00 | 0.00 | 5.69 |
4031 | 5586 | 3.055819 | ACTCCATTGATGCAGACTACGTT | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 3.99 |
4033 | 5588 | 3.170791 | ACTCCATTGATGCAGACTACG | 57.829 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
4060 | 5615 | 7.559533 | ACATATAATCCAAATGTTGTAGTGGCA | 59.440 | 33.333 | 0.00 | 0.00 | 29.68 | 4.92 |
4114 | 5680 | 4.138290 | ACGGTTGTGATGGTTATGAACAA | 58.862 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
4173 | 5743 | 5.546621 | ATTAGTAAGGACCACATGCGTAT | 57.453 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
4232 | 5802 | 1.468796 | TGGGTTGCCATGTCCCAAT | 59.531 | 52.632 | 11.16 | 0.00 | 46.78 | 3.16 |
4248 | 5818 | 5.574891 | TCCACGGATTTTGAAATATGTGG | 57.425 | 39.130 | 21.76 | 21.76 | 45.62 | 4.17 |
4255 | 5825 | 4.402793 | TGTCCTTTTCCACGGATTTTGAAA | 59.597 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
4265 | 5835 | 2.158841 | CGTACCATTGTCCTTTTCCACG | 59.841 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
4283 | 5853 | 3.781407 | CTCTAGATCCCTCCCCTATCGTA | 59.219 | 52.174 | 0.00 | 0.00 | 0.00 | 3.43 |
4310 | 5880 | 1.150986 | CTCCCTCATCCTACCTCCCAT | 59.849 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
4318 | 5888 | 2.996742 | TCATCTAGCCTCCCTCATCCTA | 59.003 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
4337 | 5907 | 0.547712 | CCCCCTCTTGTTCCTCCTCA | 60.548 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4410 | 5981 | 0.394352 | CCATCTTCCGTCCCCAAAGG | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 3.11 |
4461 | 6032 | 3.374042 | TCCTCGATGGAAGACTTCTCT | 57.626 | 47.619 | 14.72 | 2.77 | 42.94 | 3.10 |
4500 | 6071 | 1.689813 | TGTTTCTCTACCAAGCGACCA | 59.310 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
4532 | 6103 | 1.961180 | ATCTTCCCCGGAGCGAACTG | 61.961 | 60.000 | 0.73 | 0.00 | 0.00 | 3.16 |
4533 | 6104 | 1.686110 | ATCTTCCCCGGAGCGAACT | 60.686 | 57.895 | 0.73 | 0.00 | 0.00 | 3.01 |
4597 | 6168 | 3.258622 | GGATACTAATAACCAGCGCTCCT | 59.741 | 47.826 | 7.13 | 0.00 | 0.00 | 3.69 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.