Multiple sequence alignment - TraesCS2A01G570900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G570900 chr2A 100.000 4625 0 0 1 4625 768119434 768124058 0.000000e+00 8541.0
1 TraesCS2A01G570900 chr2A 80.000 150 30 0 2030 2179 519530236 519530087 1.360000e-20 111.0
2 TraesCS2A01G570900 chr2A 83.962 106 17 0 1659 1764 519530586 519530481 8.190000e-18 102.0
3 TraesCS2A01G570900 chrUn 92.719 2843 146 21 1812 4625 31713358 31716168 0.000000e+00 4047.0
4 TraesCS2A01G570900 chrUn 82.496 1394 104 66 291 1587 31711694 31713044 0.000000e+00 1094.0
5 TraesCS2A01G570900 chrUn 96.212 132 5 0 1644 1775 31713076 31713207 2.800000e-52 217.0
6 TraesCS2A01G570900 chr2D 93.922 2139 69 10 1635 3754 643230599 643232695 0.000000e+00 3173.0
7 TraesCS2A01G570900 chr2D 92.489 892 54 6 3747 4625 643233822 643234713 0.000000e+00 1264.0
8 TraesCS2A01G570900 chr2D 86.124 1045 50 32 633 1589 643229546 643230583 0.000000e+00 1038.0
9 TraesCS2A01G570900 chr2D 88.845 251 26 1 1 251 150359754 150360002 1.620000e-79 307.0
10 TraesCS2A01G570900 chr2D 87.302 252 29 2 1 251 497270417 497270666 7.570000e-73 285.0
11 TraesCS2A01G570900 chr2D 86.957 253 29 2 1 251 356591512 356591762 9.800000e-72 281.0
12 TraesCS2A01G570900 chr2D 85.616 146 13 6 290 433 643229117 643229256 3.730000e-31 147.0
13 TraesCS2A01G570900 chr2D 79.870 154 30 1 2030 2182 384251473 384251320 1.360000e-20 111.0
14 TraesCS2A01G570900 chr2D 83.019 106 18 0 1659 1764 384251823 384251718 3.810000e-16 97.1
15 TraesCS2A01G570900 chr3A 88.000 250 28 1 2 251 37622818 37622571 1.260000e-75 294.0
16 TraesCS2A01G570900 chr3A 87.649 251 29 1 1 251 37582693 37582445 1.630000e-74 291.0
17 TraesCS2A01G570900 chr7B 87.251 251 30 1 1 251 508447378 508447130 7.570000e-73 285.0
18 TraesCS2A01G570900 chr7B 92.754 69 5 0 1198 1266 133519337 133519405 2.940000e-17 100.0
19 TraesCS2A01G570900 chr1A 87.097 248 30 1 4 251 135360525 135360280 3.520000e-71 279.0
20 TraesCS2A01G570900 chr1A 76.522 230 48 6 3832 4058 2282474 2282700 2.260000e-23 121.0
21 TraesCS2A01G570900 chr1D 86.747 249 31 1 3 251 159582606 159582360 4.560000e-70 276.0
22 TraesCS2A01G570900 chr4D 86.454 251 32 1 1 251 309034450 309034202 1.640000e-69 274.0
23 TraesCS2A01G570900 chr6B 85.930 199 21 5 1067 1265 14262 14453 6.070000e-49 206.0
24 TraesCS2A01G570900 chr6B 83.417 199 27 4 1068 1266 673815198 673815390 3.680000e-41 180.0
25 TraesCS2A01G570900 chr6B 82.412 199 29 3 1068 1266 673800165 673800357 7.960000e-38 169.0
26 TraesCS2A01G570900 chr7A 83.920 199 26 2 1068 1266 124602050 124602242 7.900000e-43 185.0
27 TraesCS2A01G570900 chr7A 80.000 220 23 9 1067 1265 217697008 217697227 4.820000e-30 143.0
28 TraesCS2A01G570900 chr3B 83.163 196 27 3 1071 1266 582271968 582271779 1.710000e-39 174.0
29 TraesCS2A01G570900 chr2B 79.012 162 31 3 2030 2189 454343560 454343400 1.760000e-19 108.0
30 TraesCS2A01G570900 chr2B 82.075 106 19 0 1659 1764 454343907 454343802 1.770000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G570900 chr2A 768119434 768124058 4624 False 8541.0 8541 100.000000 1 4625 1 chr2A.!!$F1 4624
1 TraesCS2A01G570900 chrUn 31711694 31716168 4474 False 1786.0 4047 90.475667 291 4625 3 chrUn.!!$F1 4334
2 TraesCS2A01G570900 chr2D 643229117 643234713 5596 False 1405.5 3173 89.537750 290 4625 4 chr2D.!!$F4 4335

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 332 0.038159 ACGCGTTTCTTCTCCCTCTG 60.038 55.0 5.58 0.0 0.0 3.35 F
1149 1366 0.036010 CCTTGTCCTGATTGTCGCCT 60.036 55.0 0.00 0.0 0.0 5.52 F
2159 2570 0.886563 CCTTCGAGTGGGACTACGTT 59.113 55.0 0.00 0.0 0.0 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2159 2570 0.239082 ACGTACATTGCGTCTCGACA 59.761 50.0 0.00 0.0 38.23 4.35 R
2564 2980 0.811219 GCACGTAGCATGCCATCAGA 60.811 55.0 15.66 0.0 44.79 3.27 R
3887 5441 0.250252 TTCAGCACATCCGCAGTCAA 60.250 50.0 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.617290 ATGGTAGAACTTCTAAAATTGAACGT 57.383 30.769 0.00 0.00 29.58 3.99
38 39 8.441312 TGGTAGAACTTCTAAAATTGAACGTT 57.559 30.769 0.00 0.00 29.58 3.99
39 40 8.339714 TGGTAGAACTTCTAAAATTGAACGTTG 58.660 33.333 5.00 0.00 29.58 4.10
40 41 7.322938 GGTAGAACTTCTAAAATTGAACGTTGC 59.677 37.037 5.00 0.00 29.58 4.17
41 42 6.791303 AGAACTTCTAAAATTGAACGTTGCA 58.209 32.000 5.00 0.29 0.00 4.08
42 43 6.691388 AGAACTTCTAAAATTGAACGTTGCAC 59.309 34.615 5.00 0.00 0.00 4.57
43 44 6.131544 ACTTCTAAAATTGAACGTTGCACT 57.868 33.333 5.00 0.00 0.00 4.40
44 45 7.254227 ACTTCTAAAATTGAACGTTGCACTA 57.746 32.000 5.00 0.00 0.00 2.74
45 46 7.699566 ACTTCTAAAATTGAACGTTGCACTAA 58.300 30.769 5.00 0.00 0.00 2.24
46 47 8.349983 ACTTCTAAAATTGAACGTTGCACTAAT 58.650 29.630 5.00 0.00 0.00 1.73
47 48 9.820229 CTTCTAAAATTGAACGTTGCACTAATA 57.180 29.630 5.00 0.00 0.00 0.98
49 50 9.767684 TCTAAAATTGAACGTTGCACTAATATG 57.232 29.630 5.00 0.00 0.00 1.78
50 51 7.810766 AAAATTGAACGTTGCACTAATATGG 57.189 32.000 5.00 0.00 0.00 2.74
51 52 6.509418 AATTGAACGTTGCACTAATATGGT 57.491 33.333 5.00 0.00 0.00 3.55
52 53 5.950758 TTGAACGTTGCACTAATATGGTT 57.049 34.783 5.00 0.00 0.00 3.67
53 54 5.289917 TGAACGTTGCACTAATATGGTTG 57.710 39.130 5.00 0.00 0.00 3.77
54 55 3.757745 ACGTTGCACTAATATGGTTGC 57.242 42.857 0.00 0.00 0.00 4.17
55 56 3.343617 ACGTTGCACTAATATGGTTGCT 58.656 40.909 0.00 0.00 0.00 3.91
56 57 4.509616 ACGTTGCACTAATATGGTTGCTA 58.490 39.130 0.00 0.00 0.00 3.49
57 58 4.938832 ACGTTGCACTAATATGGTTGCTAA 59.061 37.500 0.00 0.00 0.00 3.09
58 59 5.413213 ACGTTGCACTAATATGGTTGCTAAA 59.587 36.000 0.00 0.00 0.00 1.85
59 60 6.072397 ACGTTGCACTAATATGGTTGCTAAAA 60.072 34.615 0.00 0.00 0.00 1.52
60 61 6.250527 CGTTGCACTAATATGGTTGCTAAAAC 59.749 38.462 0.00 1.49 0.00 2.43
61 62 7.312899 GTTGCACTAATATGGTTGCTAAAACT 58.687 34.615 0.00 0.00 0.00 2.66
62 63 7.461182 TGCACTAATATGGTTGCTAAAACTT 57.539 32.000 4.78 0.00 0.00 2.66
63 64 7.891561 TGCACTAATATGGTTGCTAAAACTTT 58.108 30.769 4.78 0.00 0.00 2.66
64 65 8.364142 TGCACTAATATGGTTGCTAAAACTTTT 58.636 29.630 4.78 0.00 0.00 2.27
65 66 9.203421 GCACTAATATGGTTGCTAAAACTTTTT 57.797 29.630 0.00 0.00 0.00 1.94
96 97 8.713708 TGGGACAAAGGAATGTTATAGAAAAA 57.286 30.769 0.00 0.00 32.57 1.94
119 120 9.612066 AAAAACTGCCATTCAAGAATTCTTTAA 57.388 25.926 18.16 16.58 33.11 1.52
120 121 9.783081 AAAACTGCCATTCAAGAATTCTTTAAT 57.217 25.926 18.16 18.04 31.91 1.40
121 122 9.783081 AAACTGCCATTCAAGAATTCTTTAATT 57.217 25.926 20.15 7.39 38.03 1.40
122 123 8.767478 ACTGCCATTCAAGAATTCTTTAATTG 57.233 30.769 20.15 18.14 35.41 2.32
123 124 7.332678 ACTGCCATTCAAGAATTCTTTAATTGC 59.667 33.333 27.92 27.92 38.05 3.56
124 125 6.310956 TGCCATTCAAGAATTCTTTAATTGCG 59.689 34.615 28.24 18.66 39.27 4.85
125 126 6.311200 GCCATTCAAGAATTCTTTAATTGCGT 59.689 34.615 24.09 7.16 35.41 5.24
126 127 7.148590 GCCATTCAAGAATTCTTTAATTGCGTT 60.149 33.333 24.09 6.62 35.41 4.84
127 128 8.164153 CCATTCAAGAATTCTTTAATTGCGTTG 58.836 33.333 20.15 12.15 35.41 4.10
128 129 7.636259 TTCAAGAATTCTTTAATTGCGTTGG 57.364 32.000 18.16 3.01 35.41 3.77
129 130 6.976088 TCAAGAATTCTTTAATTGCGTTGGA 58.024 32.000 18.16 5.30 35.41 3.53
130 131 7.429633 TCAAGAATTCTTTAATTGCGTTGGAA 58.570 30.769 18.16 0.00 35.41 3.53
131 132 7.381139 TCAAGAATTCTTTAATTGCGTTGGAAC 59.619 33.333 18.16 0.00 35.41 3.62
132 133 6.981722 AGAATTCTTTAATTGCGTTGGAACT 58.018 32.000 0.88 0.00 35.41 3.01
133 134 7.433680 AGAATTCTTTAATTGCGTTGGAACTT 58.566 30.769 0.88 0.00 35.41 2.66
134 135 7.926018 AGAATTCTTTAATTGCGTTGGAACTTT 59.074 29.630 0.88 0.00 35.41 2.66
135 136 6.820470 TTCTTTAATTGCGTTGGAACTTTG 57.180 33.333 0.00 0.00 0.00 2.77
136 137 6.137794 TCTTTAATTGCGTTGGAACTTTGA 57.862 33.333 0.00 0.00 0.00 2.69
137 138 5.974751 TCTTTAATTGCGTTGGAACTTTGAC 59.025 36.000 0.00 0.00 0.00 3.18
138 139 5.508200 TTAATTGCGTTGGAACTTTGACT 57.492 34.783 0.00 0.00 0.00 3.41
139 140 4.385358 AATTGCGTTGGAACTTTGACTT 57.615 36.364 0.00 0.00 0.00 3.01
140 141 2.842208 TGCGTTGGAACTTTGACTTG 57.158 45.000 0.00 0.00 0.00 3.16
141 142 2.088423 TGCGTTGGAACTTTGACTTGT 58.912 42.857 0.00 0.00 0.00 3.16
142 143 3.271729 TGCGTTGGAACTTTGACTTGTA 58.728 40.909 0.00 0.00 0.00 2.41
143 144 3.690139 TGCGTTGGAACTTTGACTTGTAA 59.310 39.130 0.00 0.00 0.00 2.41
144 145 4.336993 TGCGTTGGAACTTTGACTTGTAAT 59.663 37.500 0.00 0.00 0.00 1.89
145 146 4.675114 GCGTTGGAACTTTGACTTGTAATG 59.325 41.667 0.00 0.00 0.00 1.90
146 147 5.504994 GCGTTGGAACTTTGACTTGTAATGA 60.505 40.000 0.00 0.00 0.00 2.57
147 148 6.668323 CGTTGGAACTTTGACTTGTAATGAT 58.332 36.000 0.00 0.00 0.00 2.45
148 149 6.578545 CGTTGGAACTTTGACTTGTAATGATG 59.421 38.462 0.00 0.00 0.00 3.07
149 150 6.012658 TGGAACTTTGACTTGTAATGATGC 57.987 37.500 0.00 0.00 0.00 3.91
150 151 5.769662 TGGAACTTTGACTTGTAATGATGCT 59.230 36.000 0.00 0.00 0.00 3.79
151 152 6.072508 TGGAACTTTGACTTGTAATGATGCTC 60.073 38.462 0.00 0.00 0.00 4.26
152 153 5.886960 ACTTTGACTTGTAATGATGCTCC 57.113 39.130 0.00 0.00 0.00 4.70
153 154 5.564550 ACTTTGACTTGTAATGATGCTCCT 58.435 37.500 0.00 0.00 0.00 3.69
154 155 5.645497 ACTTTGACTTGTAATGATGCTCCTC 59.355 40.000 0.00 0.00 0.00 3.71
155 156 5.426689 TTGACTTGTAATGATGCTCCTCT 57.573 39.130 0.00 0.00 0.00 3.69
156 157 6.544928 TTGACTTGTAATGATGCTCCTCTA 57.455 37.500 0.00 0.00 0.00 2.43
157 158 5.907207 TGACTTGTAATGATGCTCCTCTAC 58.093 41.667 0.00 0.00 0.00 2.59
158 159 5.658634 TGACTTGTAATGATGCTCCTCTACT 59.341 40.000 0.00 0.00 0.00 2.57
159 160 6.155221 TGACTTGTAATGATGCTCCTCTACTT 59.845 38.462 0.00 0.00 0.00 2.24
160 161 7.342026 TGACTTGTAATGATGCTCCTCTACTTA 59.658 37.037 0.00 0.00 0.00 2.24
161 162 8.079211 ACTTGTAATGATGCTCCTCTACTTAA 57.921 34.615 0.00 0.00 0.00 1.85
162 163 8.540388 ACTTGTAATGATGCTCCTCTACTTAAA 58.460 33.333 0.00 0.00 0.00 1.52
163 164 9.383519 CTTGTAATGATGCTCCTCTACTTAAAA 57.616 33.333 0.00 0.00 0.00 1.52
164 165 8.948631 TGTAATGATGCTCCTCTACTTAAAAG 57.051 34.615 0.00 0.00 0.00 2.27
165 166 8.758829 TGTAATGATGCTCCTCTACTTAAAAGA 58.241 33.333 0.00 0.00 0.00 2.52
166 167 9.601217 GTAATGATGCTCCTCTACTTAAAAGAA 57.399 33.333 0.00 0.00 0.00 2.52
167 168 8.499403 AATGATGCTCCTCTACTTAAAAGAAC 57.501 34.615 0.00 0.00 0.00 3.01
168 169 7.246171 TGATGCTCCTCTACTTAAAAGAACT 57.754 36.000 0.00 0.00 0.00 3.01
169 170 8.362464 TGATGCTCCTCTACTTAAAAGAACTA 57.638 34.615 0.00 0.00 0.00 2.24
170 171 8.812972 TGATGCTCCTCTACTTAAAAGAACTAA 58.187 33.333 0.00 0.00 0.00 2.24
171 172 9.654663 GATGCTCCTCTACTTAAAAGAACTAAA 57.345 33.333 0.00 0.00 0.00 1.85
173 174 9.269453 TGCTCCTCTACTTAAAAGAACTAAAAC 57.731 33.333 0.00 0.00 0.00 2.43
174 175 9.491675 GCTCCTCTACTTAAAAGAACTAAAACT 57.508 33.333 0.00 0.00 0.00 2.66
180 181 9.508495 CTACTTAAAAGAACTAAAACTTACGCG 57.492 33.333 3.53 3.53 0.00 6.01
181 182 7.347448 ACTTAAAAGAACTAAAACTTACGCGG 58.653 34.615 12.47 0.00 0.00 6.46
182 183 5.989551 AAAAGAACTAAAACTTACGCGGA 57.010 34.783 12.47 0.00 0.00 5.54
183 184 5.989551 AAAGAACTAAAACTTACGCGGAA 57.010 34.783 12.47 7.57 0.00 4.30
184 185 5.587033 AAGAACTAAAACTTACGCGGAAG 57.413 39.130 29.21 29.21 0.00 3.46
236 237 7.541122 AGAAAAGCTTTATTCGTACTCATCC 57.459 36.000 13.10 0.00 0.00 3.51
237 238 7.331791 AGAAAAGCTTTATTCGTACTCATCCT 58.668 34.615 13.10 0.00 0.00 3.24
238 239 8.475639 AGAAAAGCTTTATTCGTACTCATCCTA 58.524 33.333 13.10 0.00 0.00 2.94
239 240 8.421673 AAAAGCTTTATTCGTACTCATCCTAC 57.578 34.615 13.10 0.00 0.00 3.18
240 241 6.086785 AGCTTTATTCGTACTCATCCTACC 57.913 41.667 0.00 0.00 0.00 3.18
241 242 5.834204 AGCTTTATTCGTACTCATCCTACCT 59.166 40.000 0.00 0.00 0.00 3.08
242 243 6.324254 AGCTTTATTCGTACTCATCCTACCTT 59.676 38.462 0.00 0.00 0.00 3.50
243 244 6.421202 GCTTTATTCGTACTCATCCTACCTTG 59.579 42.308 0.00 0.00 0.00 3.61
244 245 3.795623 TTCGTACTCATCCTACCTTGC 57.204 47.619 0.00 0.00 0.00 4.01
245 246 2.730382 TCGTACTCATCCTACCTTGCA 58.270 47.619 0.00 0.00 0.00 4.08
246 247 3.093814 TCGTACTCATCCTACCTTGCAA 58.906 45.455 0.00 0.00 0.00 4.08
247 248 3.512329 TCGTACTCATCCTACCTTGCAAA 59.488 43.478 0.00 0.00 0.00 3.68
248 249 3.865745 CGTACTCATCCTACCTTGCAAAG 59.134 47.826 0.00 0.00 45.69 2.77
265 266 6.270156 TGCAAAGATACAAGCAATCAATCA 57.730 33.333 0.00 0.00 33.48 2.57
266 267 6.689554 TGCAAAGATACAAGCAATCAATCAA 58.310 32.000 0.00 0.00 33.48 2.57
267 268 7.153315 TGCAAAGATACAAGCAATCAATCAAA 58.847 30.769 0.00 0.00 33.48 2.69
268 269 7.656542 TGCAAAGATACAAGCAATCAATCAAAA 59.343 29.630 0.00 0.00 33.48 2.44
269 270 8.166706 GCAAAGATACAAGCAATCAATCAAAAG 58.833 33.333 0.00 0.00 0.00 2.27
270 271 8.653338 CAAAGATACAAGCAATCAATCAAAAGG 58.347 33.333 0.00 0.00 0.00 3.11
271 272 6.870769 AGATACAAGCAATCAATCAAAAGGG 58.129 36.000 0.00 0.00 0.00 3.95
272 273 4.276058 ACAAGCAATCAATCAAAAGGGG 57.724 40.909 0.00 0.00 0.00 4.79
273 274 3.903090 ACAAGCAATCAATCAAAAGGGGA 59.097 39.130 0.00 0.00 0.00 4.81
274 275 4.533311 ACAAGCAATCAATCAAAAGGGGAT 59.467 37.500 0.00 0.00 0.00 3.85
275 276 4.748277 AGCAATCAATCAAAAGGGGATG 57.252 40.909 0.00 0.00 0.00 3.51
276 277 3.118519 AGCAATCAATCAAAAGGGGATGC 60.119 43.478 0.00 0.00 0.00 3.91
277 278 3.369681 GCAATCAATCAAAAGGGGATGCA 60.370 43.478 0.00 0.00 0.00 3.96
278 279 4.685030 GCAATCAATCAAAAGGGGATGCAT 60.685 41.667 0.00 0.00 0.00 3.96
279 280 4.682778 ATCAATCAAAAGGGGATGCATG 57.317 40.909 2.46 0.00 0.00 4.06
280 281 2.767394 TCAATCAAAAGGGGATGCATGG 59.233 45.455 2.46 0.00 0.00 3.66
281 282 2.767394 CAATCAAAAGGGGATGCATGGA 59.233 45.455 2.46 0.00 0.00 3.41
282 283 2.852714 TCAAAAGGGGATGCATGGAT 57.147 45.000 2.46 0.00 0.00 3.41
283 284 2.390696 TCAAAAGGGGATGCATGGATG 58.609 47.619 2.46 0.00 0.00 3.51
284 285 1.414919 CAAAAGGGGATGCATGGATGG 59.585 52.381 2.46 0.00 0.00 3.51
285 286 0.935942 AAAGGGGATGCATGGATGGA 59.064 50.000 2.46 0.00 0.00 3.41
286 287 1.164313 AAGGGGATGCATGGATGGAT 58.836 50.000 2.46 0.00 41.76 3.41
287 288 0.408309 AGGGGATGCATGGATGGATG 59.592 55.000 2.46 0.00 39.04 3.51
288 289 0.613853 GGGGATGCATGGATGGATGG 60.614 60.000 2.46 0.00 39.04 3.51
321 326 1.121967 CACGTGTACGCGTTTCTTCTC 59.878 52.381 30.35 3.82 43.83 2.87
325 330 1.068055 TGTACGCGTTTCTTCTCCCTC 60.068 52.381 20.78 0.00 0.00 4.30
326 331 1.201880 GTACGCGTTTCTTCTCCCTCT 59.798 52.381 20.78 0.00 0.00 3.69
327 332 0.038159 ACGCGTTTCTTCTCCCTCTG 60.038 55.000 5.58 0.00 0.00 3.35
328 333 0.243907 CGCGTTTCTTCTCCCTCTGA 59.756 55.000 0.00 0.00 0.00 3.27
329 334 1.734047 CGCGTTTCTTCTCCCTCTGAG 60.734 57.143 0.00 0.00 42.90 3.35
330 335 1.273886 GCGTTTCTTCTCCCTCTGAGT 59.726 52.381 3.66 0.00 42.12 3.41
331 336 2.928731 GCGTTTCTTCTCCCTCTGAGTG 60.929 54.545 3.66 0.00 42.12 3.51
347 352 1.775344 GTGTGAGACATGACACGCG 59.225 57.895 3.53 3.53 39.52 6.01
352 357 0.387367 GAGACATGACACGCGTGAGT 60.387 55.000 42.94 31.51 36.97 3.41
388 393 2.119801 AGGAGCATGCACAAAGGTAG 57.880 50.000 21.98 0.00 0.00 3.18
399 405 5.730550 TGCACAAAGGTAGTATAGGAACAG 58.269 41.667 0.00 0.00 0.00 3.16
413 419 6.642733 ATAGGAACAGAAAGAAAGATGGGA 57.357 37.500 0.00 0.00 0.00 4.37
464 525 2.232696 TCGATCGATGTGGACCTGAAAA 59.767 45.455 15.15 0.00 0.00 2.29
489 550 3.207677 GTGACTCACTCACTGGCTG 57.792 57.895 1.58 0.00 45.38 4.85
494 555 1.615883 ACTCACTCACTGGCTGTACTG 59.384 52.381 0.00 0.00 0.00 2.74
495 556 0.969149 TCACTCACTGGCTGTACTGG 59.031 55.000 0.00 0.00 0.00 4.00
509 584 4.788840 GCTGTACTGGCGTGTGTATAGTAG 60.789 50.000 1.65 0.00 32.75 2.57
510 585 3.628942 TGTACTGGCGTGTGTATAGTAGG 59.371 47.826 0.00 0.00 0.00 3.18
518 593 4.451774 GCGTGTGTATAGTAGGAGGAGTAG 59.548 50.000 0.00 0.00 0.00 2.57
571 648 2.358322 ATCGAGGAGAGGAGAAGGAC 57.642 55.000 0.00 0.00 0.00 3.85
614 752 2.045536 CCCTCCTTGCTGACAGCC 60.046 66.667 24.33 7.41 41.51 4.85
615 753 2.752358 CCTCCTTGCTGACAGCCA 59.248 61.111 24.33 13.07 41.51 4.75
617 755 1.374190 CTCCTTGCTGACAGCCAGT 59.626 57.895 24.33 0.00 44.71 4.00
618 756 0.954449 CTCCTTGCTGACAGCCAGTG 60.954 60.000 24.33 15.62 44.71 3.66
649 787 4.217210 CCACCCACCCACCAGCAA 62.217 66.667 0.00 0.00 0.00 3.91
650 788 2.118076 CACCCACCCACCAGCAAT 59.882 61.111 0.00 0.00 0.00 3.56
651 789 1.978617 CACCCACCCACCAGCAATC 60.979 63.158 0.00 0.00 0.00 2.67
652 790 2.362889 CCCACCCACCAGCAATCC 60.363 66.667 0.00 0.00 0.00 3.01
653 791 2.440147 CCACCCACCAGCAATCCA 59.560 61.111 0.00 0.00 0.00 3.41
654 792 1.679977 CCACCCACCAGCAATCCAG 60.680 63.158 0.00 0.00 0.00 3.86
655 793 2.036256 ACCCACCAGCAATCCAGC 59.964 61.111 0.00 0.00 0.00 4.85
656 794 2.036098 CCCACCAGCAATCCAGCA 59.964 61.111 0.00 0.00 36.85 4.41
709 848 3.817238 TCGCCGCTGTTTTATTTTCTTC 58.183 40.909 0.00 0.00 0.00 2.87
710 849 3.500680 TCGCCGCTGTTTTATTTTCTTCT 59.499 39.130 0.00 0.00 0.00 2.85
714 853 5.562890 GCCGCTGTTTTATTTTCTTCTGTCT 60.563 40.000 0.00 0.00 0.00 3.41
721 860 6.780706 TTTATTTTCTTCTGTCTCGTGTCC 57.219 37.500 0.00 0.00 0.00 4.02
732 871 3.432588 CGTGTCCGGTCGCTCTCT 61.433 66.667 10.47 0.00 0.00 3.10
735 874 2.041115 TGTCCGGTCGCTCTCTCTG 61.041 63.158 0.00 0.00 0.00 3.35
736 875 3.134792 TCCGGTCGCTCTCTCTGC 61.135 66.667 0.00 0.00 0.00 4.26
738 877 4.544689 CGGTCGCTCTCTCTGCCG 62.545 72.222 0.00 0.00 0.00 5.69
745 897 4.074526 TCTCTCTGCCGCTGCACC 62.075 66.667 0.00 0.00 44.23 5.01
773 925 3.173853 GGCGCACGAATTAGCACA 58.826 55.556 10.83 0.00 0.00 4.57
776 930 1.120147 GCGCACGAATTAGCACAACG 61.120 55.000 0.30 0.00 0.00 4.10
784 938 1.668419 ATTAGCACAACGATGAGGCC 58.332 50.000 0.00 0.00 33.09 5.19
866 1045 1.732941 CGTACCAACATAAGCTGCCA 58.267 50.000 0.00 0.00 0.00 4.92
873 1052 2.515523 ATAAGCTGCCAGCCGCTG 60.516 61.111 14.25 13.82 43.77 5.18
886 1065 3.520862 CGCTGCAATTCCCGGCAT 61.521 61.111 0.00 0.00 39.65 4.40
887 1066 2.105528 GCTGCAATTCCCGGCATG 59.894 61.111 0.00 0.00 39.65 4.06
888 1067 2.105528 CTGCAATTCCCGGCATGC 59.894 61.111 9.90 9.90 39.65 4.06
889 1068 3.435030 CTGCAATTCCCGGCATGCC 62.435 63.158 27.67 27.67 39.65 4.40
964 1148 3.279434 GCACATTCTTAATTCGTCCCCT 58.721 45.455 0.00 0.00 0.00 4.79
1149 1366 0.036010 CCTTGTCCTGATTGTCGCCT 60.036 55.000 0.00 0.00 0.00 5.52
1341 1558 4.759096 ATGCGCGCGTTTCCTTGC 62.759 61.111 32.35 12.41 0.00 4.01
1345 1562 2.499732 GCGCGTTTCCTTGCTTCG 60.500 61.111 8.43 0.00 0.00 3.79
1385 1603 4.421479 CGTTCCGCTGCTCCGACT 62.421 66.667 0.00 0.00 0.00 4.18
1387 1605 2.095252 GTTCCGCTGCTCCGACTTC 61.095 63.158 0.00 0.00 0.00 3.01
1511 1755 2.835431 CTCGCCCGTCCTCTCCAT 60.835 66.667 0.00 0.00 0.00 3.41
1599 1858 7.563906 TCTTTGAATGAATTCCACAAAAAGGT 58.436 30.769 16.50 0.00 35.97 3.50
1600 1859 7.495279 TCTTTGAATGAATTCCACAAAAAGGTG 59.505 33.333 16.50 9.22 35.97 4.00
1601 1860 6.232581 TGAATGAATTCCACAAAAAGGTGT 57.767 33.333 2.27 0.00 37.06 4.16
1602 1861 6.047870 TGAATGAATTCCACAAAAAGGTGTG 58.952 36.000 2.27 0.00 46.98 3.82
1610 1869 4.399004 CACAAAAAGGTGTGGAATTCCA 57.601 40.909 23.63 23.63 44.29 3.53
1625 1884 7.342769 TGGAATTCCATCTCAAGATTCATTG 57.657 36.000 23.63 0.00 42.01 2.82
1626 1885 7.120716 TGGAATTCCATCTCAAGATTCATTGA 58.879 34.615 23.63 0.00 42.01 2.57
1627 1886 7.067859 TGGAATTCCATCTCAAGATTCATTGAC 59.932 37.037 23.63 0.00 42.01 3.18
1628 1887 6.615264 ATTCCATCTCAAGATTCATTGACG 57.385 37.500 0.00 0.00 35.40 4.35
1629 1888 5.343307 TCCATCTCAAGATTCATTGACGA 57.657 39.130 0.00 0.00 35.40 4.20
1630 1889 5.922053 TCCATCTCAAGATTCATTGACGAT 58.078 37.500 0.00 0.00 35.40 3.73
1631 1890 6.351711 TCCATCTCAAGATTCATTGACGATT 58.648 36.000 0.00 0.00 35.40 3.34
1632 1891 6.259387 TCCATCTCAAGATTCATTGACGATTG 59.741 38.462 0.00 0.00 35.40 2.67
1633 1892 5.475273 TCTCAAGATTCATTGACGATTGC 57.525 39.130 0.00 0.00 35.40 3.56
1749 2012 1.815421 AGCGGCAAATGCTACGAGG 60.815 57.895 1.45 0.00 41.87 4.63
1804 2195 1.409427 CCCTACCTCTCATCCAACGTC 59.591 57.143 0.00 0.00 0.00 4.34
1805 2196 2.379972 CCTACCTCTCATCCAACGTCT 58.620 52.381 0.00 0.00 0.00 4.18
1806 2197 2.359531 CCTACCTCTCATCCAACGTCTC 59.640 54.545 0.00 0.00 0.00 3.36
1807 2198 1.924731 ACCTCTCATCCAACGTCTCA 58.075 50.000 0.00 0.00 0.00 3.27
2159 2570 0.886563 CCTTCGAGTGGGACTACGTT 59.113 55.000 0.00 0.00 0.00 3.99
2237 2653 3.294214 GCCATGGATCATTTCTTCCTGT 58.706 45.455 18.40 0.00 32.95 4.00
2239 2655 3.635373 CCATGGATCATTTCTTCCTGTGG 59.365 47.826 5.56 0.00 34.49 4.17
2240 2656 4.275810 CATGGATCATTTCTTCCTGTGGT 58.724 43.478 0.00 0.00 32.95 4.16
2241 2657 3.689347 TGGATCATTTCTTCCTGTGGTG 58.311 45.455 0.00 0.00 32.95 4.17
2242 2658 3.074390 TGGATCATTTCTTCCTGTGGTGT 59.926 43.478 0.00 0.00 32.95 4.16
2243 2659 4.288366 TGGATCATTTCTTCCTGTGGTGTA 59.712 41.667 0.00 0.00 32.95 2.90
2246 2662 6.127897 GGATCATTTCTTCCTGTGGTGTAAAG 60.128 42.308 0.00 0.00 0.00 1.85
2247 2663 5.935945 TCATTTCTTCCTGTGGTGTAAAGA 58.064 37.500 0.00 0.00 0.00 2.52
2248 2664 5.997746 TCATTTCTTCCTGTGGTGTAAAGAG 59.002 40.000 0.00 0.00 0.00 2.85
2322 2738 4.570663 CCTAAGCGGGCCGAGTCG 62.571 72.222 33.44 14.32 0.00 4.18
2325 2741 2.552585 CTAAGCGGGCCGAGTCGAAA 62.553 60.000 33.44 5.73 0.00 3.46
2349 2765 2.671682 GACTCCAAGGGGCAGTCC 59.328 66.667 0.00 0.00 31.93 3.85
2500 2916 2.541178 GCCGTCGACTTCTACATGGTAG 60.541 54.545 14.70 0.00 0.00 3.18
2501 2917 2.681848 CCGTCGACTTCTACATGGTAGT 59.318 50.000 14.70 0.00 0.00 2.73
2502 2918 3.873361 CCGTCGACTTCTACATGGTAGTA 59.127 47.826 14.70 0.00 0.00 1.82
2503 2919 4.333649 CCGTCGACTTCTACATGGTAGTAA 59.666 45.833 14.70 0.00 0.00 2.24
2504 2920 5.163723 CCGTCGACTTCTACATGGTAGTAAA 60.164 44.000 14.70 0.00 0.00 2.01
2505 2921 6.317088 CGTCGACTTCTACATGGTAGTAAAA 58.683 40.000 14.70 0.00 0.00 1.52
2506 2922 6.803320 CGTCGACTTCTACATGGTAGTAAAAA 59.197 38.462 14.70 0.00 0.00 1.94
2552 2968 1.600164 GCTTTTGCACATGCGTTCTCA 60.600 47.619 0.00 0.00 46.58 3.27
2553 2969 2.923605 GCTTTTGCACATGCGTTCTCAT 60.924 45.455 0.00 0.00 46.58 2.90
2554 2970 3.311106 CTTTTGCACATGCGTTCTCATT 58.689 40.909 0.00 0.00 45.83 2.57
2555 2971 4.475028 CTTTTGCACATGCGTTCTCATTA 58.525 39.130 0.00 0.00 45.83 1.90
2564 2980 6.748658 CACATGCGTTCTCATTAATTGTGATT 59.251 34.615 5.56 0.00 0.00 2.57
2686 3102 0.463654 TGCAAGGTATCCATCCACGC 60.464 55.000 0.00 0.00 0.00 5.34
2736 3155 3.776158 AATGTGGGTGCGCACATT 58.224 50.000 38.60 29.45 44.35 2.71
2740 3159 0.595588 TGTGGGTGCGCACATTTTAG 59.404 50.000 38.60 0.00 0.00 1.85
2818 3237 2.432628 CTGCCGTCGTCAACCCTC 60.433 66.667 0.00 0.00 0.00 4.30
2822 3241 2.572284 CGTCGTCAACCCTCTCCC 59.428 66.667 0.00 0.00 0.00 4.30
2861 3280 4.785453 CACCCTCCCCAGCTTCGC 62.785 72.222 0.00 0.00 0.00 4.70
2872 3291 1.610673 AGCTTCGCCTTCCTCCTCA 60.611 57.895 0.00 0.00 0.00 3.86
2963 3382 4.803426 CTCCAGCTCGGTCACGGC 62.803 72.222 2.68 0.00 41.39 5.68
3012 3431 5.858581 CCTTGTTTTCTTTCATGGATTCGAC 59.141 40.000 0.00 0.00 32.78 4.20
3059 3478 3.135712 TGTAGCTTTGTCACCTTCCTTGA 59.864 43.478 0.00 0.00 0.00 3.02
3102 3521 1.413077 GGGTACTGCTAAGCCTTCGAT 59.587 52.381 0.00 0.00 0.00 3.59
3150 3569 2.494918 CTCCCCGTCATCGTCACC 59.505 66.667 0.00 0.00 35.01 4.02
3153 3572 2.202570 CCCGTCATCGTCACCGTC 60.203 66.667 0.00 0.00 35.01 4.79
3196 3615 3.055530 AGTCTCCAAAGAGCACGATCAAT 60.056 43.478 0.00 0.00 40.22 2.57
3256 3675 0.038744 CAGATGAAGGGGCAACACCT 59.961 55.000 0.00 0.00 46.76 4.00
3260 3679 1.989706 TGAAGGGGCAACACCTAAAC 58.010 50.000 0.00 0.00 46.76 2.01
3262 3681 0.558712 AAGGGGCAACACCTAAACCA 59.441 50.000 0.00 0.00 46.76 3.67
3277 3696 5.011329 ACCTAAACCATCTTCGAACAGTACA 59.989 40.000 0.00 0.00 0.00 2.90
3299 3718 2.550699 AAATCAAGGGATGGCGCCGA 62.551 55.000 23.90 11.48 32.92 5.54
3415 3834 2.280797 GACAACACCTCCAGCGCA 60.281 61.111 11.47 0.00 0.00 6.09
3494 3913 3.688185 GCTGATCTCATTGTCTTGAAGCA 59.312 43.478 0.00 0.00 29.96 3.91
3593 4012 1.553248 AGCCCGCTACTTGTACAATGA 59.447 47.619 9.13 0.00 0.00 2.57
3698 4117 4.848357 AGCCATGCACAAATAGTTAGAGT 58.152 39.130 0.00 0.00 0.00 3.24
3737 4156 9.695526 CTCTATCTTTTCTATTGTCAGATCAGG 57.304 37.037 0.00 0.00 0.00 3.86
3743 4162 7.675161 TTTCTATTGTCAGATCAGGGATGTA 57.325 36.000 0.00 0.00 0.00 2.29
3776 5329 7.085052 ACTAAGTGTGGTGAGTTTTTCTTTC 57.915 36.000 0.00 0.00 0.00 2.62
3824 5378 6.149474 GCTTTCCAAAGTAGCATCAAGTCTAA 59.851 38.462 1.14 0.00 38.28 2.10
3848 5402 0.840617 TGAGGGTGTGTTTGGTAGCA 59.159 50.000 0.00 0.00 0.00 3.49
3856 5410 3.815401 GTGTGTTTGGTAGCAGTTCTCAT 59.185 43.478 0.00 0.00 0.00 2.90
3887 5441 4.042809 TGGATGTTACCCTTTGAGACATGT 59.957 41.667 0.00 0.00 31.59 3.21
3891 5445 4.819630 TGTTACCCTTTGAGACATGTTGAC 59.180 41.667 0.00 0.00 0.00 3.18
3978 5533 4.202567 TGAGCCAAGACTTTATTTGGGAGT 60.203 41.667 5.51 0.00 43.23 3.85
4001 5556 4.643334 TCTGCATCTGATTAAGCATGCTTT 59.357 37.500 35.99 20.91 38.85 3.51
4060 5615 3.820467 TCTGCATCAATGGAGTTTTTCGT 59.180 39.130 10.74 0.00 45.19 3.85
4065 5620 2.034053 TCAATGGAGTTTTTCGTGCCAC 59.966 45.455 0.00 0.00 0.00 5.01
4114 5680 5.039920 TCACTAGCATAAGCATGACCATT 57.960 39.130 0.00 0.00 45.49 3.16
4173 5743 1.449423 ATCACAAGCATACGCCGCA 60.449 52.632 0.00 0.00 39.83 5.69
4208 5778 9.308000 TGGTCCTTACTAATTTTCATTCAACAT 57.692 29.630 0.00 0.00 0.00 2.71
4248 5818 2.831526 ACTAAATTGGGACATGGCAACC 59.168 45.455 0.00 0.00 39.30 3.77
4255 5825 1.411501 GGGACATGGCAACCCACATAT 60.412 52.381 18.43 0.00 45.77 1.78
4265 5835 4.875536 GGCAACCCACATATTTCAAAATCC 59.124 41.667 0.00 0.00 0.00 3.01
4283 5853 1.144093 TCCGTGGAAAAGGACAATGGT 59.856 47.619 0.00 0.00 0.00 3.55
4310 5880 1.462426 GGGAGGGATCTAGAGGGAGA 58.538 60.000 0.00 0.00 0.00 3.71
4318 5888 1.928480 TCTAGAGGGAGATGGGAGGT 58.072 55.000 0.00 0.00 0.00 3.85
4337 5907 2.043801 GGTAGGATGAGGGAGGCTAGAT 59.956 54.545 0.00 0.00 0.00 1.98
4410 5981 2.436115 GGTGGCGGTGACTAAGGC 60.436 66.667 0.00 0.00 0.00 4.35
4467 6038 5.565695 GTCAGAGTTTAGTCGCTAGAGAAG 58.434 45.833 0.00 0.00 0.00 2.85
4500 6071 1.671054 CCAAAGGTGGCGACGTCAT 60.671 57.895 17.16 0.00 38.35 3.06
4532 6103 5.244178 TGGTAGAGAAACAAGAGGAGAGAAC 59.756 44.000 0.00 0.00 0.00 3.01
4533 6104 5.244178 GGTAGAGAAACAAGAGGAGAGAACA 59.756 44.000 0.00 0.00 0.00 3.18
4588 6159 0.686224 TCTTCGGGGCCGTTTCTTAA 59.314 50.000 0.00 0.00 40.74 1.85
4597 6168 2.750712 GGCCGTTTCTTAATTAGCACCA 59.249 45.455 0.00 0.00 0.00 4.17
4605 6176 0.830648 TAATTAGCACCAGGAGCGCT 59.169 50.000 11.27 11.27 39.80 5.92
4614 6185 1.871080 CCAGGAGCGCTGGTTATTAG 58.129 55.000 18.48 0.00 37.22 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.715121 ACGTTCAATTTTAGAAGTTCTACCATA 57.285 29.630 12.25 0.00 0.00 2.74
12 13 8.617290 ACGTTCAATTTTAGAAGTTCTACCAT 57.383 30.769 12.25 4.85 0.00 3.55
13 14 8.339714 CAACGTTCAATTTTAGAAGTTCTACCA 58.660 33.333 12.25 2.64 0.00 3.25
14 15 7.322938 GCAACGTTCAATTTTAGAAGTTCTACC 59.677 37.037 12.25 0.00 0.00 3.18
15 16 7.853929 TGCAACGTTCAATTTTAGAAGTTCTAC 59.146 33.333 12.25 0.40 0.00 2.59
16 17 7.853929 GTGCAACGTTCAATTTTAGAAGTTCTA 59.146 33.333 8.59 8.59 0.00 2.10
17 18 6.691388 GTGCAACGTTCAATTTTAGAAGTTCT 59.309 34.615 10.87 10.87 0.00 3.01
18 19 6.691388 AGTGCAACGTTCAATTTTAGAAGTTC 59.309 34.615 0.00 0.00 45.86 3.01
19 20 6.560711 AGTGCAACGTTCAATTTTAGAAGTT 58.439 32.000 0.00 0.00 45.86 2.66
20 21 6.131544 AGTGCAACGTTCAATTTTAGAAGT 57.868 33.333 0.00 0.00 45.86 3.01
21 22 8.728088 ATTAGTGCAACGTTCAATTTTAGAAG 57.272 30.769 0.00 0.00 45.86 2.85
23 24 9.767684 CATATTAGTGCAACGTTCAATTTTAGA 57.232 29.630 0.00 0.00 45.86 2.10
24 25 9.009327 CCATATTAGTGCAACGTTCAATTTTAG 57.991 33.333 0.00 0.00 45.86 1.85
25 26 8.516234 ACCATATTAGTGCAACGTTCAATTTTA 58.484 29.630 0.00 0.00 45.86 1.52
26 27 7.375053 ACCATATTAGTGCAACGTTCAATTTT 58.625 30.769 0.00 0.00 45.86 1.82
27 28 6.919721 ACCATATTAGTGCAACGTTCAATTT 58.080 32.000 0.00 0.00 45.86 1.82
28 29 6.509418 ACCATATTAGTGCAACGTTCAATT 57.491 33.333 0.00 0.00 45.86 2.32
29 30 6.321717 CAACCATATTAGTGCAACGTTCAAT 58.678 36.000 0.00 1.82 45.86 2.57
30 31 5.694816 CAACCATATTAGTGCAACGTTCAA 58.305 37.500 0.00 0.00 45.86 2.69
31 32 4.378978 GCAACCATATTAGTGCAACGTTCA 60.379 41.667 0.00 0.00 45.86 3.18
32 33 4.095610 GCAACCATATTAGTGCAACGTTC 58.904 43.478 0.00 0.00 45.86 3.95
33 34 3.756434 AGCAACCATATTAGTGCAACGTT 59.244 39.130 0.00 0.00 45.86 3.99
34 35 3.343617 AGCAACCATATTAGTGCAACGT 58.656 40.909 0.00 0.00 45.86 3.99
35 36 5.478233 TTAGCAACCATATTAGTGCAACG 57.522 39.130 0.00 0.00 45.86 4.10
36 37 7.312899 AGTTTTAGCAACCATATTAGTGCAAC 58.687 34.615 0.00 0.00 0.00 4.17
37 38 7.461182 AGTTTTAGCAACCATATTAGTGCAA 57.539 32.000 0.00 0.00 0.00 4.08
38 39 7.461182 AAGTTTTAGCAACCATATTAGTGCA 57.539 32.000 0.00 0.00 0.00 4.57
39 40 8.757164 AAAAGTTTTAGCAACCATATTAGTGC 57.243 30.769 0.00 0.00 0.00 4.40
62 63 6.241645 ACATTCCTTTGTCCCAAAACAAAAA 58.758 32.000 4.04 0.00 45.67 1.94
63 64 5.810095 ACATTCCTTTGTCCCAAAACAAAA 58.190 33.333 4.04 0.00 45.67 2.44
64 65 5.428184 ACATTCCTTTGTCCCAAAACAAA 57.572 34.783 2.60 2.60 44.59 2.83
65 66 5.428184 AACATTCCTTTGTCCCAAAACAA 57.572 34.783 0.00 0.00 37.37 2.83
66 67 6.739331 ATAACATTCCTTTGTCCCAAAACA 57.261 33.333 0.00 0.00 0.00 2.83
67 68 8.117813 TCTATAACATTCCTTTGTCCCAAAAC 57.882 34.615 0.00 0.00 0.00 2.43
68 69 8.713708 TTCTATAACATTCCTTTGTCCCAAAA 57.286 30.769 0.00 0.00 0.00 2.44
69 70 8.713708 TTTCTATAACATTCCTTTGTCCCAAA 57.286 30.769 0.00 0.00 0.00 3.28
70 71 8.713708 TTTTCTATAACATTCCTTTGTCCCAA 57.286 30.769 0.00 0.00 0.00 4.12
71 72 8.713708 TTTTTCTATAACATTCCTTTGTCCCA 57.286 30.769 0.00 0.00 0.00 4.37
93 94 9.612066 TTAAAGAATTCTTGAATGGCAGTTTTT 57.388 25.926 21.15 3.28 36.12 1.94
94 95 9.783081 ATTAAAGAATTCTTGAATGGCAGTTTT 57.217 25.926 24.42 7.49 36.05 2.43
95 96 9.783081 AATTAAAGAATTCTTGAATGGCAGTTT 57.217 25.926 25.34 10.64 37.17 2.66
96 97 9.211485 CAATTAAAGAATTCTTGAATGGCAGTT 57.789 29.630 25.34 11.23 37.17 3.16
97 98 7.332678 GCAATTAAAGAATTCTTGAATGGCAGT 59.667 33.333 34.50 17.97 46.35 4.40
98 99 7.463648 CGCAATTAAAGAATTCTTGAATGGCAG 60.464 37.037 36.13 28.82 46.99 4.85
99 100 6.310956 CGCAATTAAAGAATTCTTGAATGGCA 59.689 34.615 36.13 14.57 46.99 4.92
100 101 6.311200 ACGCAATTAAAGAATTCTTGAATGGC 59.689 34.615 31.95 31.95 44.80 4.40
101 102 7.816945 ACGCAATTAAAGAATTCTTGAATGG 57.183 32.000 25.34 23.55 37.17 3.16
102 103 8.164153 CCAACGCAATTAAAGAATTCTTGAATG 58.836 33.333 25.34 20.06 37.17 2.67
103 104 8.087750 TCCAACGCAATTAAAGAATTCTTGAAT 58.912 29.630 20.92 20.92 38.39 2.57
104 105 7.429633 TCCAACGCAATTAAAGAATTCTTGAA 58.570 30.769 21.15 19.71 36.12 2.69
105 106 6.976088 TCCAACGCAATTAAAGAATTCTTGA 58.024 32.000 21.15 11.48 36.12 3.02
106 107 7.382218 AGTTCCAACGCAATTAAAGAATTCTTG 59.618 33.333 21.15 10.31 36.12 3.02
107 108 7.433680 AGTTCCAACGCAATTAAAGAATTCTT 58.566 30.769 15.11 15.11 32.73 2.52
108 109 6.981722 AGTTCCAACGCAATTAAAGAATTCT 58.018 32.000 0.88 0.88 32.73 2.40
109 110 7.637709 AAGTTCCAACGCAATTAAAGAATTC 57.362 32.000 0.00 0.00 32.73 2.17
110 111 7.708752 TCAAAGTTCCAACGCAATTAAAGAATT 59.291 29.630 0.00 0.00 35.56 2.17
111 112 7.169140 GTCAAAGTTCCAACGCAATTAAAGAAT 59.831 33.333 0.00 0.00 0.00 2.40
112 113 6.474102 GTCAAAGTTCCAACGCAATTAAAGAA 59.526 34.615 0.00 0.00 0.00 2.52
113 114 5.974751 GTCAAAGTTCCAACGCAATTAAAGA 59.025 36.000 0.00 0.00 0.00 2.52
114 115 5.977129 AGTCAAAGTTCCAACGCAATTAAAG 59.023 36.000 0.00 0.00 0.00 1.85
115 116 5.897050 AGTCAAAGTTCCAACGCAATTAAA 58.103 33.333 0.00 0.00 0.00 1.52
116 117 5.508200 AGTCAAAGTTCCAACGCAATTAA 57.492 34.783 0.00 0.00 0.00 1.40
117 118 5.163602 ACAAGTCAAAGTTCCAACGCAATTA 60.164 36.000 0.00 0.00 0.00 1.40
118 119 4.111916 CAAGTCAAAGTTCCAACGCAATT 58.888 39.130 0.00 0.00 0.00 2.32
119 120 3.130340 ACAAGTCAAAGTTCCAACGCAAT 59.870 39.130 0.00 0.00 0.00 3.56
120 121 2.490115 ACAAGTCAAAGTTCCAACGCAA 59.510 40.909 0.00 0.00 0.00 4.85
121 122 2.088423 ACAAGTCAAAGTTCCAACGCA 58.912 42.857 0.00 0.00 0.00 5.24
122 123 2.844122 ACAAGTCAAAGTTCCAACGC 57.156 45.000 0.00 0.00 0.00 4.84
123 124 6.055231 TCATTACAAGTCAAAGTTCCAACG 57.945 37.500 0.00 0.00 0.00 4.10
124 125 6.363357 GCATCATTACAAGTCAAAGTTCCAAC 59.637 38.462 0.00 0.00 0.00 3.77
125 126 6.265196 AGCATCATTACAAGTCAAAGTTCCAA 59.735 34.615 0.00 0.00 0.00 3.53
126 127 5.769662 AGCATCATTACAAGTCAAAGTTCCA 59.230 36.000 0.00 0.00 0.00 3.53
127 128 6.259550 AGCATCATTACAAGTCAAAGTTCC 57.740 37.500 0.00 0.00 0.00 3.62
128 129 6.150140 AGGAGCATCATTACAAGTCAAAGTTC 59.850 38.462 0.00 0.00 36.25 3.01
129 130 6.006449 AGGAGCATCATTACAAGTCAAAGTT 58.994 36.000 0.00 0.00 36.25 2.66
130 131 5.564550 AGGAGCATCATTACAAGTCAAAGT 58.435 37.500 0.00 0.00 36.25 2.66
131 132 5.879223 AGAGGAGCATCATTACAAGTCAAAG 59.121 40.000 0.00 0.00 36.25 2.77
132 133 5.809001 AGAGGAGCATCATTACAAGTCAAA 58.191 37.500 0.00 0.00 36.25 2.69
133 134 5.426689 AGAGGAGCATCATTACAAGTCAA 57.573 39.130 0.00 0.00 36.25 3.18
134 135 5.658634 AGTAGAGGAGCATCATTACAAGTCA 59.341 40.000 0.00 0.00 36.25 3.41
135 136 6.155475 AGTAGAGGAGCATCATTACAAGTC 57.845 41.667 0.00 0.00 36.25 3.01
136 137 6.552445 AAGTAGAGGAGCATCATTACAAGT 57.448 37.500 0.00 0.00 36.25 3.16
137 138 8.948631 TTTAAGTAGAGGAGCATCATTACAAG 57.051 34.615 0.00 0.00 36.25 3.16
138 139 9.383519 CTTTTAAGTAGAGGAGCATCATTACAA 57.616 33.333 0.00 0.00 36.25 2.41
139 140 8.758829 TCTTTTAAGTAGAGGAGCATCATTACA 58.241 33.333 0.00 0.00 36.25 2.41
140 141 9.601217 TTCTTTTAAGTAGAGGAGCATCATTAC 57.399 33.333 0.00 0.00 36.25 1.89
141 142 9.601217 GTTCTTTTAAGTAGAGGAGCATCATTA 57.399 33.333 0.00 0.00 36.25 1.90
142 143 8.325046 AGTTCTTTTAAGTAGAGGAGCATCATT 58.675 33.333 0.00 0.00 36.25 2.57
143 144 7.856415 AGTTCTTTTAAGTAGAGGAGCATCAT 58.144 34.615 0.00 0.00 36.25 2.45
144 145 7.246171 AGTTCTTTTAAGTAGAGGAGCATCA 57.754 36.000 0.00 0.00 36.25 3.07
145 146 9.654663 TTTAGTTCTTTTAAGTAGAGGAGCATC 57.345 33.333 0.00 0.00 0.00 3.91
147 148 9.269453 GTTTTAGTTCTTTTAAGTAGAGGAGCA 57.731 33.333 0.00 0.00 0.00 4.26
148 149 9.491675 AGTTTTAGTTCTTTTAAGTAGAGGAGC 57.508 33.333 0.00 0.00 0.00 4.70
154 155 9.508495 CGCGTAAGTTTTAGTTCTTTTAAGTAG 57.492 33.333 0.00 0.00 41.68 2.57
155 156 8.487176 CCGCGTAAGTTTTAGTTCTTTTAAGTA 58.513 33.333 4.92 0.00 41.68 2.24
156 157 7.224557 TCCGCGTAAGTTTTAGTTCTTTTAAGT 59.775 33.333 4.92 0.00 41.68 2.24
157 158 7.566709 TCCGCGTAAGTTTTAGTTCTTTTAAG 58.433 34.615 4.92 0.00 41.68 1.85
158 159 7.475771 TCCGCGTAAGTTTTAGTTCTTTTAA 57.524 32.000 4.92 0.00 41.68 1.52
159 160 7.475771 TTCCGCGTAAGTTTTAGTTCTTTTA 57.524 32.000 4.92 0.00 41.68 1.52
160 161 5.989551 TCCGCGTAAGTTTTAGTTCTTTT 57.010 34.783 4.92 0.00 41.68 2.27
161 162 5.559608 GCTTCCGCGTAAGTTTTAGTTCTTT 60.560 40.000 13.22 0.00 41.68 2.52
162 163 4.084171 GCTTCCGCGTAAGTTTTAGTTCTT 60.084 41.667 13.22 0.00 41.68 2.52
163 164 3.431233 GCTTCCGCGTAAGTTTTAGTTCT 59.569 43.478 13.22 0.00 41.68 3.01
164 165 3.431233 AGCTTCCGCGTAAGTTTTAGTTC 59.569 43.478 13.22 0.00 42.32 3.01
165 166 3.396560 AGCTTCCGCGTAAGTTTTAGTT 58.603 40.909 13.22 0.00 42.32 2.24
166 167 3.036075 AGCTTCCGCGTAAGTTTTAGT 57.964 42.857 13.22 0.00 42.32 2.24
167 168 5.713822 AATAGCTTCCGCGTAAGTTTTAG 57.286 39.130 13.22 0.00 42.32 1.85
168 169 6.484818 AAAATAGCTTCCGCGTAAGTTTTA 57.515 33.333 13.22 4.45 42.32 1.52
169 170 5.366829 AAAATAGCTTCCGCGTAAGTTTT 57.633 34.783 13.22 8.95 42.32 2.43
170 171 5.640783 ACTAAAATAGCTTCCGCGTAAGTTT 59.359 36.000 13.22 7.92 42.32 2.66
171 172 5.173664 ACTAAAATAGCTTCCGCGTAAGTT 58.826 37.500 13.22 9.65 42.32 2.66
172 173 4.752146 ACTAAAATAGCTTCCGCGTAAGT 58.248 39.130 13.22 2.91 42.32 2.24
173 174 7.404139 AATACTAAAATAGCTTCCGCGTAAG 57.596 36.000 7.12 7.12 42.32 2.34
174 175 7.278424 ACAAATACTAAAATAGCTTCCGCGTAA 59.722 33.333 4.92 0.00 42.32 3.18
175 176 6.757947 ACAAATACTAAAATAGCTTCCGCGTA 59.242 34.615 4.92 0.00 42.32 4.42
176 177 5.583457 ACAAATACTAAAATAGCTTCCGCGT 59.417 36.000 4.92 0.00 42.32 6.01
177 178 6.044512 ACAAATACTAAAATAGCTTCCGCG 57.955 37.500 0.00 0.00 42.32 6.46
178 179 7.694886 AGAACAAATACTAAAATAGCTTCCGC 58.305 34.615 0.00 0.00 0.00 5.54
210 211 9.095065 GGATGAGTACGAATAAAGCTTTTCTTA 57.905 33.333 18.47 5.06 33.88 2.10
211 212 7.824779 AGGATGAGTACGAATAAAGCTTTTCTT 59.175 33.333 18.47 11.44 36.34 2.52
212 213 7.331791 AGGATGAGTACGAATAAAGCTTTTCT 58.668 34.615 18.47 4.62 0.00 2.52
213 214 7.541122 AGGATGAGTACGAATAAAGCTTTTC 57.459 36.000 18.47 8.92 0.00 2.29
214 215 7.494952 GGTAGGATGAGTACGAATAAAGCTTTT 59.505 37.037 18.47 0.00 0.00 2.27
215 216 6.985059 GGTAGGATGAGTACGAATAAAGCTTT 59.015 38.462 17.30 17.30 0.00 3.51
216 217 6.324254 AGGTAGGATGAGTACGAATAAAGCTT 59.676 38.462 0.00 0.00 0.00 3.74
217 218 5.834204 AGGTAGGATGAGTACGAATAAAGCT 59.166 40.000 0.00 0.00 0.00 3.74
218 219 6.086785 AGGTAGGATGAGTACGAATAAAGC 57.913 41.667 0.00 0.00 0.00 3.51
219 220 6.421202 GCAAGGTAGGATGAGTACGAATAAAG 59.579 42.308 0.00 0.00 0.00 1.85
220 221 6.127281 TGCAAGGTAGGATGAGTACGAATAAA 60.127 38.462 0.00 0.00 0.00 1.40
221 222 5.361571 TGCAAGGTAGGATGAGTACGAATAA 59.638 40.000 0.00 0.00 0.00 1.40
222 223 4.891168 TGCAAGGTAGGATGAGTACGAATA 59.109 41.667 0.00 0.00 0.00 1.75
223 224 3.704566 TGCAAGGTAGGATGAGTACGAAT 59.295 43.478 0.00 0.00 0.00 3.34
224 225 3.093814 TGCAAGGTAGGATGAGTACGAA 58.906 45.455 0.00 0.00 0.00 3.85
225 226 2.730382 TGCAAGGTAGGATGAGTACGA 58.270 47.619 0.00 0.00 0.00 3.43
226 227 3.520290 TTGCAAGGTAGGATGAGTACG 57.480 47.619 0.00 0.00 0.00 3.67
227 228 5.086104 TCTTTGCAAGGTAGGATGAGTAC 57.914 43.478 8.56 0.00 0.00 2.73
228 229 5.957771 ATCTTTGCAAGGTAGGATGAGTA 57.042 39.130 8.56 0.00 0.00 2.59
229 230 4.851639 ATCTTTGCAAGGTAGGATGAGT 57.148 40.909 8.56 0.00 0.00 3.41
230 231 5.674525 TGTATCTTTGCAAGGTAGGATGAG 58.325 41.667 8.56 0.00 0.00 2.90
231 232 5.692115 TGTATCTTTGCAAGGTAGGATGA 57.308 39.130 8.56 0.00 0.00 2.92
232 233 5.220931 GCTTGTATCTTTGCAAGGTAGGATG 60.221 44.000 8.56 0.00 43.44 3.51
233 234 4.884164 GCTTGTATCTTTGCAAGGTAGGAT 59.116 41.667 8.56 7.17 43.44 3.24
234 235 4.261801 GCTTGTATCTTTGCAAGGTAGGA 58.738 43.478 8.56 0.20 43.44 2.94
235 236 4.009675 TGCTTGTATCTTTGCAAGGTAGG 58.990 43.478 8.56 0.00 43.44 3.18
236 237 5.627499 TTGCTTGTATCTTTGCAAGGTAG 57.373 39.130 8.56 0.00 43.44 3.18
237 238 5.709631 TGATTGCTTGTATCTTTGCAAGGTA 59.290 36.000 8.56 0.00 46.37 3.08
238 239 4.523943 TGATTGCTTGTATCTTTGCAAGGT 59.476 37.500 8.56 0.00 46.37 3.50
239 240 5.063180 TGATTGCTTGTATCTTTGCAAGG 57.937 39.130 1.35 1.35 46.37 3.61
240 241 6.809689 TGATTGATTGCTTGTATCTTTGCAAG 59.190 34.615 0.00 0.00 46.37 4.01
242 243 6.270156 TGATTGATTGCTTGTATCTTTGCA 57.730 33.333 0.00 0.00 0.00 4.08
243 244 7.585286 TTTGATTGATTGCTTGTATCTTTGC 57.415 32.000 0.00 0.00 0.00 3.68
244 245 8.653338 CCTTTTGATTGATTGCTTGTATCTTTG 58.347 33.333 0.00 0.00 0.00 2.77
245 246 7.820872 CCCTTTTGATTGATTGCTTGTATCTTT 59.179 33.333 0.00 0.00 0.00 2.52
246 247 7.325694 CCCTTTTGATTGATTGCTTGTATCTT 58.674 34.615 0.00 0.00 0.00 2.40
247 248 6.127253 CCCCTTTTGATTGATTGCTTGTATCT 60.127 38.462 0.00 0.00 0.00 1.98
248 249 6.044682 CCCCTTTTGATTGATTGCTTGTATC 58.955 40.000 0.00 0.00 0.00 2.24
249 250 5.721000 TCCCCTTTTGATTGATTGCTTGTAT 59.279 36.000 0.00 0.00 0.00 2.29
250 251 5.083122 TCCCCTTTTGATTGATTGCTTGTA 58.917 37.500 0.00 0.00 0.00 2.41
251 252 3.903090 TCCCCTTTTGATTGATTGCTTGT 59.097 39.130 0.00 0.00 0.00 3.16
252 253 4.540359 TCCCCTTTTGATTGATTGCTTG 57.460 40.909 0.00 0.00 0.00 4.01
253 254 4.624604 GCATCCCCTTTTGATTGATTGCTT 60.625 41.667 0.00 0.00 0.00 3.91
254 255 3.118519 GCATCCCCTTTTGATTGATTGCT 60.119 43.478 0.00 0.00 0.00 3.91
255 256 3.200483 GCATCCCCTTTTGATTGATTGC 58.800 45.455 0.00 0.00 0.00 3.56
256 257 4.475051 TGCATCCCCTTTTGATTGATTG 57.525 40.909 0.00 0.00 0.00 2.67
257 258 4.141574 CCATGCATCCCCTTTTGATTGATT 60.142 41.667 0.00 0.00 0.00 2.57
258 259 3.389983 CCATGCATCCCCTTTTGATTGAT 59.610 43.478 0.00 0.00 0.00 2.57
259 260 2.767394 CCATGCATCCCCTTTTGATTGA 59.233 45.455 0.00 0.00 0.00 2.57
260 261 2.767394 TCCATGCATCCCCTTTTGATTG 59.233 45.455 0.00 0.00 0.00 2.67
261 262 3.119009 TCCATGCATCCCCTTTTGATT 57.881 42.857 0.00 0.00 0.00 2.57
262 263 2.852714 TCCATGCATCCCCTTTTGAT 57.147 45.000 0.00 0.00 0.00 2.57
263 264 2.390696 CATCCATGCATCCCCTTTTGA 58.609 47.619 0.00 0.00 0.00 2.69
264 265 1.414919 CCATCCATGCATCCCCTTTTG 59.585 52.381 0.00 0.00 0.00 2.44
265 266 1.291637 TCCATCCATGCATCCCCTTTT 59.708 47.619 0.00 0.00 0.00 2.27
266 267 0.935942 TCCATCCATGCATCCCCTTT 59.064 50.000 0.00 0.00 0.00 3.11
267 268 1.164313 ATCCATCCATGCATCCCCTT 58.836 50.000 0.00 0.00 0.00 3.95
268 269 0.408309 CATCCATCCATGCATCCCCT 59.592 55.000 0.00 0.00 0.00 4.79
269 270 0.613853 CCATCCATCCATGCATCCCC 60.614 60.000 0.00 0.00 0.00 4.81
270 271 0.613853 CCCATCCATCCATGCATCCC 60.614 60.000 0.00 0.00 0.00 3.85
271 272 0.113776 ACCCATCCATCCATGCATCC 59.886 55.000 0.00 0.00 0.00 3.51
272 273 1.254026 CACCCATCCATCCATGCATC 58.746 55.000 0.00 0.00 0.00 3.91
273 274 0.559205 ACACCCATCCATCCATGCAT 59.441 50.000 0.00 0.00 0.00 3.96
274 275 0.396001 CACACCCATCCATCCATGCA 60.396 55.000 0.00 0.00 0.00 3.96
275 276 1.111116 CCACACCCATCCATCCATGC 61.111 60.000 0.00 0.00 0.00 4.06
276 277 0.552363 TCCACACCCATCCATCCATG 59.448 55.000 0.00 0.00 0.00 3.66
277 278 1.426598 GATCCACACCCATCCATCCAT 59.573 52.381 0.00 0.00 0.00 3.41
278 279 0.846015 GATCCACACCCATCCATCCA 59.154 55.000 0.00 0.00 0.00 3.41
279 280 0.250467 CGATCCACACCCATCCATCC 60.250 60.000 0.00 0.00 0.00 3.51
280 281 0.758734 TCGATCCACACCCATCCATC 59.241 55.000 0.00 0.00 0.00 3.51
281 282 1.349026 GATCGATCCACACCCATCCAT 59.651 52.381 14.76 0.00 0.00 3.41
282 283 0.758734 GATCGATCCACACCCATCCA 59.241 55.000 14.76 0.00 0.00 3.41
283 284 0.758734 TGATCGATCCACACCCATCC 59.241 55.000 22.31 0.00 0.00 3.51
284 285 1.869754 CGTGATCGATCCACACCCATC 60.870 57.143 22.31 0.00 39.71 3.51
285 286 0.104855 CGTGATCGATCCACACCCAT 59.895 55.000 22.31 0.00 39.71 4.00
286 287 1.254975 ACGTGATCGATCCACACCCA 61.255 55.000 22.31 0.00 40.62 4.51
287 288 0.806102 CACGTGATCGATCCACACCC 60.806 60.000 22.31 0.00 40.62 4.61
288 289 0.108804 ACACGTGATCGATCCACACC 60.109 55.000 25.01 4.77 40.62 4.16
321 326 2.094286 GTCATGTCTCACACTCAGAGGG 60.094 54.545 0.00 0.00 33.92 4.30
325 330 2.323059 CGTGTCATGTCTCACACTCAG 58.677 52.381 12.10 0.00 40.74 3.35
326 331 1.602920 GCGTGTCATGTCTCACACTCA 60.603 52.381 12.10 0.00 40.74 3.41
327 332 1.063806 GCGTGTCATGTCTCACACTC 58.936 55.000 12.10 2.57 40.74 3.51
328 333 0.664466 CGCGTGTCATGTCTCACACT 60.664 55.000 12.10 0.00 40.74 3.55
329 334 0.939577 ACGCGTGTCATGTCTCACAC 60.940 55.000 12.93 10.72 39.70 3.82
330 335 0.939106 CACGCGTGTCATGTCTCACA 60.939 55.000 30.50 1.18 34.66 3.58
331 336 0.663269 TCACGCGTGTCATGTCTCAC 60.663 55.000 35.74 0.79 0.00 3.51
347 352 0.596577 TGCGTGTCTACTCCACTCAC 59.403 55.000 0.00 0.00 0.00 3.51
352 357 1.689813 TCCTTTTGCGTGTCTACTCCA 59.310 47.619 0.00 0.00 0.00 3.86
388 393 7.565680 TCCCATCTTTCTTTCTGTTCCTATAC 58.434 38.462 0.00 0.00 0.00 1.47
399 405 5.105595 CCAATCCAACTCCCATCTTTCTTTC 60.106 44.000 0.00 0.00 0.00 2.62
413 419 1.066430 ACGCACGTATCCAATCCAACT 60.066 47.619 0.00 0.00 0.00 3.16
489 550 3.879295 TCCTACTATACACACGCCAGTAC 59.121 47.826 0.00 0.00 0.00 2.73
494 555 2.553172 CTCCTCCTACTATACACACGCC 59.447 54.545 0.00 0.00 0.00 5.68
495 556 3.212685 ACTCCTCCTACTATACACACGC 58.787 50.000 0.00 0.00 0.00 5.34
509 584 3.799420 CGTACACGTACTACTACTCCTCC 59.201 52.174 5.84 0.00 34.04 4.30
540 617 9.417561 TCTCCTCTCCTCGATTTATTTTACTTA 57.582 33.333 0.00 0.00 0.00 2.24
541 618 8.307582 TCTCCTCTCCTCGATTTATTTTACTT 57.692 34.615 0.00 0.00 0.00 2.24
542 619 7.899648 TCTCCTCTCCTCGATTTATTTTACT 57.100 36.000 0.00 0.00 0.00 2.24
543 620 7.654116 CCTTCTCCTCTCCTCGATTTATTTTAC 59.346 40.741 0.00 0.00 0.00 2.01
544 621 7.563924 TCCTTCTCCTCTCCTCGATTTATTTTA 59.436 37.037 0.00 0.00 0.00 1.52
545 622 6.384305 TCCTTCTCCTCTCCTCGATTTATTTT 59.616 38.462 0.00 0.00 0.00 1.82
553 630 0.107606 CGTCCTTCTCCTCTCCTCGA 60.108 60.000 0.00 0.00 0.00 4.04
614 752 4.351054 GTGGGTGGGAGGCCACTG 62.351 72.222 5.01 0.00 40.24 3.66
709 848 2.176055 CGACCGGACACGAGACAG 59.824 66.667 9.46 0.00 44.60 3.51
710 849 4.034258 GCGACCGGACACGAGACA 62.034 66.667 9.46 0.00 44.60 3.41
714 853 3.429141 GAGAGCGACCGGACACGA 61.429 66.667 9.46 0.00 44.60 4.35
721 860 4.544689 CGGCAGAGAGAGCGACCG 62.545 72.222 0.00 0.00 0.00 4.79
761 913 2.930040 CCTCATCGTTGTGCTAATTCGT 59.070 45.455 0.00 0.00 0.00 3.85
762 914 2.285834 GCCTCATCGTTGTGCTAATTCG 60.286 50.000 0.00 0.00 0.00 3.34
763 915 2.032178 GGCCTCATCGTTGTGCTAATTC 59.968 50.000 0.00 0.00 0.00 2.17
764 916 2.017049 GGCCTCATCGTTGTGCTAATT 58.983 47.619 0.00 0.00 0.00 1.40
765 917 1.065491 TGGCCTCATCGTTGTGCTAAT 60.065 47.619 3.32 0.00 0.00 1.73
766 918 0.323302 TGGCCTCATCGTTGTGCTAA 59.677 50.000 3.32 0.00 0.00 3.09
767 919 0.108186 CTGGCCTCATCGTTGTGCTA 60.108 55.000 3.32 4.52 0.00 3.49
771 923 2.045926 GGCTGGCCTCATCGTTGT 60.046 61.111 3.32 0.00 0.00 3.32
772 924 2.110967 CAGGCTGGCCTCATCGTTG 61.111 63.158 11.60 0.00 46.28 4.10
773 925 2.270205 CAGGCTGGCCTCATCGTT 59.730 61.111 11.60 0.00 46.28 3.85
776 930 2.191641 GGTCAGGCTGGCCTCATC 59.808 66.667 30.44 3.45 46.28 2.92
784 938 2.181021 GTACGTCCGGTCAGGCTG 59.819 66.667 8.58 8.58 40.77 4.85
835 1010 0.461163 TTGGTACGCGTATGCATGCT 60.461 50.000 23.56 7.07 42.97 3.79
873 1052 4.225703 GGGCATGCCGGGAATTGC 62.226 66.667 29.90 12.70 36.85 3.56
875 1054 4.440829 ACGGGCATGCCGGGAATT 62.441 61.111 38.05 21.04 40.25 2.17
1009 1193 1.456705 CGGAGAGGGAGGGAGGAAG 60.457 68.421 0.00 0.00 0.00 3.46
1122 1336 0.043940 ATCAGGACAAGGAGGAGGCT 59.956 55.000 0.00 0.00 0.00 4.58
1125 1339 2.417924 CGACAATCAGGACAAGGAGGAG 60.418 54.545 0.00 0.00 0.00 3.69
1341 1558 4.030977 CGGAACCTACATTTACGAACGAAG 59.969 45.833 0.14 0.00 0.00 3.79
1345 1562 2.028404 CGCGGAACCTACATTTACGAAC 59.972 50.000 0.00 0.00 0.00 3.95
1385 1603 2.587679 GCACACGCACGTTACGGAA 61.588 57.895 10.20 0.00 38.36 4.30
1387 1605 4.403706 CGCACACGCACGTTACGG 62.404 66.667 10.20 0.00 38.40 4.02
1495 1739 3.147595 CATGGAGAGGACGGGCGA 61.148 66.667 0.00 0.00 0.00 5.54
1511 1755 2.449518 TGTCCTCCTGGTTGGGCA 60.450 61.111 10.68 10.68 35.35 5.36
1558 1802 5.215252 TCAAAGAGAAGAAGGTGTAGGTG 57.785 43.478 0.00 0.00 0.00 4.00
1600 1859 7.067859 TCAATGAATCTTGAGATGGAATTCCAC 59.932 37.037 29.32 21.12 38.42 4.02
1601 1860 7.067859 GTCAATGAATCTTGAGATGGAATTCCA 59.932 37.037 28.92 28.92 41.97 3.53
1602 1861 7.424001 GTCAATGAATCTTGAGATGGAATTCC 58.576 38.462 18.17 18.17 35.88 3.01
1603 1862 7.011763 TCGTCAATGAATCTTGAGATGGAATTC 59.988 37.037 0.00 0.00 35.88 2.17
1604 1863 6.825213 TCGTCAATGAATCTTGAGATGGAATT 59.175 34.615 0.00 0.00 35.88 2.17
1605 1864 6.351711 TCGTCAATGAATCTTGAGATGGAAT 58.648 36.000 0.00 0.00 35.88 3.01
1606 1865 5.733676 TCGTCAATGAATCTTGAGATGGAA 58.266 37.500 0.00 0.00 35.88 3.53
1607 1866 5.343307 TCGTCAATGAATCTTGAGATGGA 57.657 39.130 0.00 0.00 35.88 3.41
1608 1867 6.427974 CAATCGTCAATGAATCTTGAGATGG 58.572 40.000 0.00 0.00 35.88 3.51
1609 1868 5.907945 GCAATCGTCAATGAATCTTGAGATG 59.092 40.000 0.00 0.00 35.88 2.90
1610 1869 5.821470 AGCAATCGTCAATGAATCTTGAGAT 59.179 36.000 4.71 0.00 35.88 2.75
1611 1870 5.181009 AGCAATCGTCAATGAATCTTGAGA 58.819 37.500 4.71 0.00 35.88 3.27
1612 1871 5.293814 AGAGCAATCGTCAATGAATCTTGAG 59.706 40.000 4.71 0.00 35.88 3.02
1613 1872 5.181009 AGAGCAATCGTCAATGAATCTTGA 58.819 37.500 4.71 0.00 32.84 3.02
1614 1873 5.064325 TGAGAGCAATCGTCAATGAATCTTG 59.936 40.000 0.00 0.00 0.00 3.02
1615 1874 5.181009 TGAGAGCAATCGTCAATGAATCTT 58.819 37.500 0.00 0.00 0.00 2.40
1616 1875 4.763073 TGAGAGCAATCGTCAATGAATCT 58.237 39.130 0.00 0.00 0.00 2.40
1617 1876 5.261661 GTTGAGAGCAATCGTCAATGAATC 58.738 41.667 0.00 0.00 36.22 2.52
1618 1877 4.201753 CGTTGAGAGCAATCGTCAATGAAT 60.202 41.667 0.00 0.00 38.83 2.57
1619 1878 3.123453 CGTTGAGAGCAATCGTCAATGAA 59.877 43.478 0.00 0.00 38.83 2.57
1620 1879 2.667969 CGTTGAGAGCAATCGTCAATGA 59.332 45.455 0.00 0.00 38.83 2.57
1621 1880 2.413112 ACGTTGAGAGCAATCGTCAATG 59.587 45.455 0.00 0.00 41.19 2.82
1622 1881 2.413112 CACGTTGAGAGCAATCGTCAAT 59.587 45.455 0.00 0.00 38.62 2.57
1623 1882 1.792367 CACGTTGAGAGCAATCGTCAA 59.208 47.619 0.00 0.00 38.62 3.18
1624 1883 1.418373 CACGTTGAGAGCAATCGTCA 58.582 50.000 0.00 0.00 38.62 4.35
1625 1884 0.716108 CCACGTTGAGAGCAATCGTC 59.284 55.000 0.00 0.00 38.62 4.20
1626 1885 0.317160 TCCACGTTGAGAGCAATCGT 59.683 50.000 0.00 0.00 40.06 3.73
1627 1886 0.716108 GTCCACGTTGAGAGCAATCG 59.284 55.000 0.00 0.00 36.22 3.34
1628 1887 0.716108 CGTCCACGTTGAGAGCAATC 59.284 55.000 0.00 0.00 36.22 2.67
1629 1888 0.317160 TCGTCCACGTTGAGAGCAAT 59.683 50.000 0.00 0.00 40.80 3.56
1630 1889 0.317160 ATCGTCCACGTTGAGAGCAA 59.683 50.000 0.00 0.00 40.80 3.91
1631 1890 0.388520 CATCGTCCACGTTGAGAGCA 60.389 55.000 4.48 0.00 40.40 4.26
1632 1891 1.687494 GCATCGTCCACGTTGAGAGC 61.687 60.000 13.12 0.87 40.40 4.09
1633 1892 0.388520 TGCATCGTCCACGTTGAGAG 60.389 55.000 13.12 0.00 40.40 3.20
1749 2012 1.700029 CACGTACGAATGCGGTGAC 59.300 57.895 24.41 0.00 43.17 3.67
1804 2195 4.926238 GTGATTAGATTAGATGGCGGTGAG 59.074 45.833 0.00 0.00 0.00 3.51
1805 2196 4.262463 GGTGATTAGATTAGATGGCGGTGA 60.262 45.833 0.00 0.00 0.00 4.02
1806 2197 3.997021 GGTGATTAGATTAGATGGCGGTG 59.003 47.826 0.00 0.00 0.00 4.94
1807 2198 3.646162 TGGTGATTAGATTAGATGGCGGT 59.354 43.478 0.00 0.00 0.00 5.68
2059 2470 0.462581 GGCGATCATGTCCTTGAGCA 60.463 55.000 0.00 0.00 31.54 4.26
2145 2556 0.877071 TCGACAACGTAGTCCCACTC 59.123 55.000 0.00 0.00 45.00 3.51
2159 2570 0.239082 ACGTACATTGCGTCTCGACA 59.761 50.000 0.00 0.00 38.23 4.35
2211 2627 2.787994 AGAAATGATCCATGGCGATCC 58.212 47.619 6.96 0.00 38.32 3.36
2246 2662 7.948137 TGCACGCACATTTATTTTATTTTCTC 58.052 30.769 0.00 0.00 0.00 2.87
2247 2663 7.812191 TCTGCACGCACATTTATTTTATTTTCT 59.188 29.630 0.00 0.00 0.00 2.52
2248 2664 7.892731 GTCTGCACGCACATTTATTTTATTTTC 59.107 33.333 0.00 0.00 0.00 2.29
2322 2738 1.839424 CCTTGGAGTCCATGGGTTTC 58.161 55.000 28.91 7.18 42.84 2.78
2349 2765 1.602311 AGAAGTTGAGCAGCACAAGG 58.398 50.000 5.39 0.00 0.00 3.61
2352 2768 1.942657 GTGAAGAAGTTGAGCAGCACA 59.057 47.619 0.00 0.00 0.00 4.57
2507 2923 8.192774 GCCAAAAAGTAAACTAGTGTAGGTTTT 58.807 33.333 0.00 1.93 36.93 2.43
2508 2924 7.558807 AGCCAAAAAGTAAACTAGTGTAGGTTT 59.441 33.333 0.00 0.00 36.93 3.27
2509 2925 7.058525 AGCCAAAAAGTAAACTAGTGTAGGTT 58.941 34.615 0.00 0.00 39.46 3.50
2510 2926 6.598503 AGCCAAAAAGTAAACTAGTGTAGGT 58.401 36.000 0.00 0.00 0.00 3.08
2525 2941 2.600320 CGCATGTGCAAAAGCCAAAAAG 60.600 45.455 5.77 0.00 42.21 2.27
2546 2962 7.646922 GCCATCAGAATCACAATTAATGAGAAC 59.353 37.037 0.00 0.00 32.20 3.01
2552 2968 6.041637 AGCATGCCATCAGAATCACAATTAAT 59.958 34.615 15.66 0.00 0.00 1.40
2553 2969 5.361571 AGCATGCCATCAGAATCACAATTAA 59.638 36.000 15.66 0.00 0.00 1.40
2554 2970 4.891168 AGCATGCCATCAGAATCACAATTA 59.109 37.500 15.66 0.00 0.00 1.40
2555 2971 3.704566 AGCATGCCATCAGAATCACAATT 59.295 39.130 15.66 0.00 0.00 2.32
2564 2980 0.811219 GCACGTAGCATGCCATCAGA 60.811 55.000 15.66 0.00 44.79 3.27
2686 3102 3.331150 TCGTACAAACATGTGGCTTAGG 58.669 45.455 0.00 0.00 0.00 2.69
2736 3155 8.742777 ACATATGTTAGTCGGTACAAGACTAAA 58.257 33.333 28.90 22.43 0.00 1.85
2740 3159 7.823149 AAACATATGTTAGTCGGTACAAGAC 57.177 36.000 21.07 11.40 37.25 3.01
2861 3280 1.555075 TGATTTCGGTGAGGAGGAAGG 59.445 52.381 0.00 0.00 0.00 3.46
2872 3291 1.134729 GCCAATGCCAATGATTTCGGT 60.135 47.619 0.00 0.00 0.00 4.69
3012 3431 1.041437 GGATAGAGAAGGGTCCACGG 58.959 60.000 0.00 0.00 0.00 4.94
3059 3478 3.728373 GGGCCATGAAGACGGGGT 61.728 66.667 4.39 0.00 0.00 4.95
3086 3505 1.410882 GAGGATCGAAGGCTTAGCAGT 59.589 52.381 6.53 0.00 0.00 4.40
3150 3569 3.284323 TCTTTGGAGACTTCTTCGACG 57.716 47.619 0.00 0.00 0.00 5.12
3153 3572 5.293560 ACTTCTTCTTTGGAGACTTCTTCG 58.706 41.667 0.00 0.00 0.00 3.79
3196 3615 3.324556 TGAGTTCATCCACTGACATCACA 59.675 43.478 0.00 0.00 32.17 3.58
3256 3675 5.221481 TGGTGTACTGTTCGAAGATGGTTTA 60.221 40.000 0.00 0.00 35.04 2.01
3260 3679 3.313012 TGGTGTACTGTTCGAAGATGG 57.687 47.619 0.00 0.00 35.04 3.51
3262 3681 5.547465 TGATTTGGTGTACTGTTCGAAGAT 58.453 37.500 0.00 0.00 35.04 2.40
3277 3696 1.322538 GCGCCATCCCTTGATTTGGT 61.323 55.000 0.00 0.00 0.00 3.67
3299 3718 1.549170 AGTACCGTTCGGAGATGCTTT 59.451 47.619 18.28 0.00 35.04 3.51
3400 3819 3.730761 GCTGCGCTGGAGGTGTTG 61.731 66.667 16.47 0.00 0.00 3.33
3415 3834 4.162690 GTCTTGGGCCGGATCGCT 62.163 66.667 5.05 0.00 0.00 4.93
3593 4012 1.100510 TCAGCTTGACTATACGCCGT 58.899 50.000 0.00 0.00 0.00 5.68
3650 4069 2.093288 ACCGATGATGCAAGAGACATGT 60.093 45.455 0.00 0.00 0.00 3.21
3722 4141 9.429359 GTTTATACATCCCTGATCTGACAATAG 57.571 37.037 0.38 0.00 0.00 1.73
3737 4156 7.822822 ACCACACTTAGTTCAGTTTATACATCC 59.177 37.037 0.00 0.00 0.00 3.51
3743 4162 6.827727 ACTCACCACACTTAGTTCAGTTTAT 58.172 36.000 0.00 0.00 0.00 1.40
3776 5329 5.934625 GCTCATAGTATAATCCCACCAACAG 59.065 44.000 0.00 0.00 0.00 3.16
3824 5378 2.815158 ACCAAACACACCCTCAGTTTT 58.185 42.857 0.00 0.00 33.54 2.43
3856 5410 3.060479 AGGGTAACATCCATGCTAGGA 57.940 47.619 0.13 0.13 43.01 2.94
3887 5441 0.250252 TTCAGCACATCCGCAGTCAA 60.250 50.000 0.00 0.00 0.00 3.18
3891 5445 1.655484 TGTATTCAGCACATCCGCAG 58.345 50.000 0.00 0.00 0.00 5.18
3978 5533 3.816994 AGCATGCTTAATCAGATGCAGA 58.183 40.909 16.30 0.00 43.04 4.26
4001 5556 4.481368 ACTACCAAATGTAATCTCGGCA 57.519 40.909 0.00 0.00 0.00 5.69
4031 5586 3.055819 ACTCCATTGATGCAGACTACGTT 60.056 43.478 0.00 0.00 0.00 3.99
4033 5588 3.170791 ACTCCATTGATGCAGACTACG 57.829 47.619 0.00 0.00 0.00 3.51
4060 5615 7.559533 ACATATAATCCAAATGTTGTAGTGGCA 59.440 33.333 0.00 0.00 29.68 4.92
4114 5680 4.138290 ACGGTTGTGATGGTTATGAACAA 58.862 39.130 0.00 0.00 0.00 2.83
4173 5743 5.546621 ATTAGTAAGGACCACATGCGTAT 57.453 39.130 0.00 0.00 0.00 3.06
4232 5802 1.468796 TGGGTTGCCATGTCCCAAT 59.531 52.632 11.16 0.00 46.78 3.16
4248 5818 5.574891 TCCACGGATTTTGAAATATGTGG 57.425 39.130 21.76 21.76 45.62 4.17
4255 5825 4.402793 TGTCCTTTTCCACGGATTTTGAAA 59.597 37.500 0.00 0.00 0.00 2.69
4265 5835 2.158841 CGTACCATTGTCCTTTTCCACG 59.841 50.000 0.00 0.00 0.00 4.94
4283 5853 3.781407 CTCTAGATCCCTCCCCTATCGTA 59.219 52.174 0.00 0.00 0.00 3.43
4310 5880 1.150986 CTCCCTCATCCTACCTCCCAT 59.849 57.143 0.00 0.00 0.00 4.00
4318 5888 2.996742 TCATCTAGCCTCCCTCATCCTA 59.003 50.000 0.00 0.00 0.00 2.94
4337 5907 0.547712 CCCCCTCTTGTTCCTCCTCA 60.548 60.000 0.00 0.00 0.00 3.86
4410 5981 0.394352 CCATCTTCCGTCCCCAAAGG 60.394 60.000 0.00 0.00 0.00 3.11
4461 6032 3.374042 TCCTCGATGGAAGACTTCTCT 57.626 47.619 14.72 2.77 42.94 3.10
4500 6071 1.689813 TGTTTCTCTACCAAGCGACCA 59.310 47.619 0.00 0.00 0.00 4.02
4532 6103 1.961180 ATCTTCCCCGGAGCGAACTG 61.961 60.000 0.73 0.00 0.00 3.16
4533 6104 1.686110 ATCTTCCCCGGAGCGAACT 60.686 57.895 0.73 0.00 0.00 3.01
4597 6168 3.258622 GGATACTAATAACCAGCGCTCCT 59.741 47.826 7.13 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.