Multiple sequence alignment - TraesCS2A01G570300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G570300 chr2A 100.000 4539 0 0 1 4539 767941183 767945721 0.000000e+00 8383.0
1 TraesCS2A01G570300 chr2A 96.947 131 4 0 1799 1929 80886090 80885960 2.130000e-53 220.0
2 TraesCS2A01G570300 chr2D 92.065 1714 83 24 2850 4539 642989977 642991661 0.000000e+00 2362.0
3 TraesCS2A01G570300 chr2D 90.828 1341 78 20 426 1745 642987840 642989156 0.000000e+00 1753.0
4 TraesCS2A01G570300 chr2D 92.140 827 40 9 1926 2749 642989159 642989963 0.000000e+00 1144.0
5 TraesCS2A01G570300 chr2D 86.282 277 16 9 1 272 642987512 642987771 9.610000e-72 281.0
6 TraesCS2A01G570300 chrUn 95.498 844 31 5 1913 2750 31599652 31600494 0.000000e+00 1341.0
7 TraesCS2A01G570300 chrUn 90.216 787 46 10 2850 3635 31600507 31601263 0.000000e+00 998.0
8 TraesCS2A01G570300 chrUn 86.239 952 64 36 864 1767 31598658 31599590 0.000000e+00 970.0
9 TraesCS2A01G570300 chrUn 88.504 722 56 18 3550 4262 31601261 31601964 0.000000e+00 848.0
10 TraesCS2A01G570300 chrUn 85.524 601 53 21 297 874 31598011 31598600 8.400000e-167 597.0
11 TraesCS2A01G570300 chrUn 93.269 104 7 0 2740 2843 71312960 71312857 2.190000e-33 154.0
12 TraesCS2A01G570300 chrUn 87.037 54 7 0 4486 4539 31602239 31602292 1.360000e-05 62.1
13 TraesCS2A01G570300 chrUn 100.000 30 0 0 4302 4331 31602016 31602045 6.340000e-04 56.5
14 TraesCS2A01G570300 chr6B 84.824 995 92 26 2841 3821 712252063 712253012 0.000000e+00 946.0
15 TraesCS2A01G570300 chr6B 90.405 667 49 6 2093 2750 712251407 712252067 0.000000e+00 863.0
16 TraesCS2A01G570300 chr6B 76.040 697 78 42 1085 1740 712250542 712251190 3.460000e-71 279.0
17 TraesCS2A01G570300 chr6B 99.231 130 1 0 1799 1928 685667155 685667284 7.590000e-58 235.0
18 TraesCS2A01G570300 chr6D 85.193 986 72 42 2841 3795 467049321 467050263 0.000000e+00 944.0
19 TraesCS2A01G570300 chr6D 89.833 659 57 7 2096 2750 467048673 467049325 0.000000e+00 837.0
20 TraesCS2A01G570300 chr6D 74.277 622 84 28 1128 1715 467047829 467048408 4.630000e-45 193.0
21 TraesCS2A01G570300 chr6D 94.845 97 5 0 2747 2843 319691668 319691572 7.860000e-33 152.0
22 TraesCS2A01G570300 chr6D 90.411 73 3 1 3998 4066 467050272 467050344 4.830000e-15 93.5
23 TraesCS2A01G570300 chr6D 100.000 31 0 0 1710 1740 467048419 467048449 1.760000e-04 58.4
24 TraesCS2A01G570300 chr6A 94.221 571 30 2 2183 2750 613342598 613343168 0.000000e+00 869.0
25 TraesCS2A01G570300 chr6A 89.744 507 39 6 2841 3339 613343164 613343665 1.780000e-178 636.0
26 TraesCS2A01G570300 chr6A 75.289 692 80 35 1085 1740 613341683 613342319 3.510000e-61 246.0
27 TraesCS2A01G570300 chr6A 85.388 219 22 6 3371 3583 613343665 613343879 7.650000e-53 219.0
28 TraesCS2A01G570300 chr6A 85.950 121 6 2 3619 3735 613343882 613343995 7.980000e-23 119.0
29 TraesCS2A01G570300 chr4B 81.366 483 82 6 2270 2750 22991600 22991124 1.980000e-103 387.0
30 TraesCS2A01G570300 chr4B 96.324 136 4 1 1799 1934 294107702 294107568 5.910000e-54 222.0
31 TraesCS2A01G570300 chr4B 93.333 105 5 2 2740 2843 658159283 658159180 2.190000e-33 154.0
32 TraesCS2A01G570300 chr4A 80.903 487 87 4 2265 2750 589878976 589879457 3.310000e-101 379.0
33 TraesCS2A01G570300 chr4A 96.324 136 5 0 1792 1927 627359971 627359836 1.640000e-54 224.0
34 TraesCS2A01G570300 chr4A 88.235 51 3 2 246 296 25026408 25026455 1.760000e-04 58.4
35 TraesCS2A01G570300 chr4A 84.746 59 7 2 232 288 56270156 56270098 1.760000e-04 58.4
36 TraesCS2A01G570300 chr4D 81.941 443 78 2 2270 2711 12599711 12599270 1.540000e-99 374.0
37 TraesCS2A01G570300 chr4D 90.476 42 2 1 253 294 400169912 400169873 2.000000e-03 54.7
38 TraesCS2A01G570300 chr1B 97.692 130 3 0 1800 1929 669017052 669017181 1.640000e-54 224.0
39 TraesCS2A01G570300 chr5A 96.269 134 5 0 1800 1933 154345533 154345666 2.130000e-53 220.0
40 TraesCS2A01G570300 chr1A 95.556 135 6 0 1792 1926 27289562 27289696 2.750000e-52 217.0
41 TraesCS2A01G570300 chr1A 94.366 142 7 1 1799 1939 484984414 484984273 2.750000e-52 217.0
42 TraesCS2A01G570300 chr1A 85.000 60 7 2 229 288 165559632 165559689 4.900000e-05 60.2
43 TraesCS2A01G570300 chr5B 94.891 137 5 1 1790 1926 377347584 377347718 3.560000e-51 213.0
44 TraesCS2A01G570300 chr5B 92.308 39 3 0 250 288 704908503 704908541 6.340000e-04 56.5
45 TraesCS2A01G570300 chr5B 90.476 42 2 2 287 327 698459702 698459742 2.000000e-03 54.7
46 TraesCS2A01G570300 chr1D 94.059 101 6 0 2743 2843 354518917 354519017 2.190000e-33 154.0
47 TraesCS2A01G570300 chr1D 96.000 50 2 0 1735 1784 106843200 106843249 1.050000e-11 82.4
48 TraesCS2A01G570300 chr1D 81.690 71 12 1 242 311 418242517 418242447 1.760000e-04 58.4
49 TraesCS2A01G570300 chr3D 94.845 97 5 0 2747 2843 138076240 138076336 7.860000e-33 152.0
50 TraesCS2A01G570300 chr3D 92.453 106 7 1 2743 2848 175538803 175538907 2.830000e-32 150.0
51 TraesCS2A01G570300 chr3D 90.909 110 10 0 2735 2844 426879566 426879675 1.020000e-31 148.0
52 TraesCS2A01G570300 chr3D 91.509 106 9 0 2738 2843 110927872 110927767 3.660000e-31 147.0
53 TraesCS2A01G570300 chr3D 96.154 52 1 1 1732 1782 562693522 562693573 2.910000e-12 84.2
54 TraesCS2A01G570300 chr3D 90.323 62 5 1 1733 1793 556951472 556951411 3.760000e-11 80.5
55 TraesCS2A01G570300 chr3D 92.500 40 2 1 241 280 183746716 183746678 6.340000e-04 56.5
56 TraesCS2A01G570300 chr3A 94.845 97 5 0 2747 2843 156231984 156232080 7.860000e-33 152.0
57 TraesCS2A01G570300 chr3B 96.000 50 2 0 1736 1785 392299432 392299383 1.050000e-11 82.4
58 TraesCS2A01G570300 chr3B 92.500 40 2 1 241 280 262201034 262200996 6.340000e-04 56.5
59 TraesCS2A01G570300 chr2B 94.444 54 2 1 1743 1795 397447747 397447694 1.050000e-11 82.4
60 TraesCS2A01G570300 chr5D 89.062 64 5 2 1720 1783 175298705 175298766 1.350000e-10 78.7
61 TraesCS2A01G570300 chr5D 82.558 86 9 6 1746 1826 424123713 424123629 2.270000e-08 71.3
62 TraesCS2A01G570300 chr7B 88.710 62 6 1 1743 1804 168077592 168077652 1.750000e-09 75.0
63 TraesCS2A01G570300 chr7D 87.500 56 6 1 234 288 613451437 613451492 3.790000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G570300 chr2A 767941183 767945721 4538 False 8383.000000 8383 100.000000 1 4539 1 chr2A.!!$F1 4538
1 TraesCS2A01G570300 chr2D 642987512 642991661 4149 False 1385.000000 2362 90.328750 1 4539 4 chr2D.!!$F1 4538
2 TraesCS2A01G570300 chrUn 31598011 31602292 4281 False 696.085714 1341 90.431143 297 4539 7 chrUn.!!$F1 4242
3 TraesCS2A01G570300 chr6B 712250542 712253012 2470 False 696.000000 946 83.756333 1085 3821 3 chr6B.!!$F2 2736
4 TraesCS2A01G570300 chr6D 467047829 467050344 2515 False 425.180000 944 87.942800 1128 4066 5 chr6D.!!$F1 2938
5 TraesCS2A01G570300 chr6A 613341683 613343995 2312 False 417.800000 869 86.118400 1085 3735 5 chr6A.!!$F1 2650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 792 0.373716 GACATTTGGCGATGTCCGTC 59.626 55.0 17.97 0.0 46.48 4.79 F
2254 2569 0.033504 GGACGAACAACAGGCTGAGA 59.966 55.0 23.66 0.0 0.00 3.27 F
2260 2575 0.034059 ACAACAGGCTGAGAAGGACG 59.966 55.0 23.66 2.4 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2266 2581 0.179124 GCGTACTCCTTCTCAGCCTG 60.179 60.0 0.00 0.00 0.00 4.85 R
3461 3808 0.446222 CCAAGCGTACCATCAAACGG 59.554 55.0 0.00 0.00 39.46 4.44 R
3862 4313 1.030488 CAGTGAGGCATGCCAGGAAG 61.030 60.0 37.18 20.13 38.92 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.077991 GCTCCCGTGTTTAAATAAGTTTACTTT 58.922 33.333 0.00 0.00 37.40 2.66
34 35 9.389570 CTCCCGTGTTTAAATAAGTTTACTTTG 57.610 33.333 0.00 0.00 37.40 2.77
43 44 7.724305 AAATAAGTTTACTTTGCTGAGACGA 57.276 32.000 0.00 0.00 37.40 4.20
50 51 2.050836 TTTGCTGAGACGAAGGCCCA 62.051 55.000 0.00 0.00 0.00 5.36
58 59 1.950973 GACGAAGGCCCAGAGGAGAC 61.951 65.000 0.00 0.00 33.47 3.36
78 79 1.862201 CAACGAGCTTTGTTCACGGTA 59.138 47.619 2.59 0.00 0.00 4.02
83 84 0.878416 GCTTTGTTCACGGTATGCCA 59.122 50.000 0.00 0.00 34.09 4.92
109 110 1.065564 GGATGCAGCAGGAAGAAGACT 60.066 52.381 3.51 0.00 0.00 3.24
174 177 9.996554 AAGGCTATTTTTAAAGTTTATGCTGTT 57.003 25.926 0.00 0.00 0.00 3.16
175 178 9.996554 AGGCTATTTTTAAAGTTTATGCTGTTT 57.003 25.926 0.00 0.00 0.00 2.83
272 278 9.566331 TCATACTCCCTCTGATCCATATTAATT 57.434 33.333 0.00 0.00 0.00 1.40
273 279 9.610705 CATACTCCCTCTGATCCATATTAATTG 57.389 37.037 0.00 0.00 0.00 2.32
275 281 8.050316 ACTCCCTCTGATCCATATTAATTGTT 57.950 34.615 0.00 0.00 0.00 2.83
277 283 7.815383 TCCCTCTGATCCATATTAATTGTTGT 58.185 34.615 0.00 0.00 0.00 3.32
281 287 9.941664 CTCTGATCCATATTAATTGTTGTTGAC 57.058 33.333 0.00 0.00 0.00 3.18
296 302 9.691362 ATTGTTGTTGACTTTGTATACAAATCC 57.309 29.630 26.87 21.13 43.92 3.01
297 303 8.226819 TGTTGTTGACTTTGTATACAAATCCA 57.773 30.769 26.87 22.95 43.92 3.41
298 304 8.687242 TGTTGTTGACTTTGTATACAAATCCAA 58.313 29.630 26.87 26.06 43.92 3.53
379 385 4.216257 TCTTATGGAAGTGCTTTTGTGAGC 59.784 41.667 0.00 0.00 43.00 4.26
405 419 5.871524 TGAGAGCTCATGTGAACAGTAAATC 59.128 40.000 17.77 0.00 34.14 2.17
406 420 5.798132 AGAGCTCATGTGAACAGTAAATCA 58.202 37.500 17.77 0.00 0.00 2.57
469 496 3.062909 GCATCGATGTGCATGCAAATTTT 59.937 39.130 24.10 9.66 44.18 1.82
483 510 7.482428 GCATGCAAATTTTGTGATTGAATTACC 59.518 33.333 14.21 0.00 0.00 2.85
485 512 8.085720 TGCAAATTTTGTGATTGAATTACCTG 57.914 30.769 10.65 0.00 0.00 4.00
516 543 9.435688 GATGTCTAGGGCAAATAAAACAAAATT 57.564 29.630 0.00 0.00 0.00 1.82
561 588 9.334947 TCAAAACAATATTTTTGGAGCATCAAA 57.665 25.926 11.06 1.15 43.71 2.69
562 589 9.601971 CAAAACAATATTTTTGGAGCATCAAAG 57.398 29.630 5.14 0.00 41.07 2.77
578 607 9.691362 GAGCATCAAAGTTTTAGTTTTGGATTA 57.309 29.630 0.00 0.00 35.52 1.75
680 709 6.038997 ACTGTTTTGAGTAGTCCTGGTATC 57.961 41.667 0.00 0.00 0.00 2.24
688 720 5.082251 AGTAGTCCTGGTATCGGAAAAAC 57.918 43.478 0.00 0.00 31.13 2.43
689 721 4.776308 AGTAGTCCTGGTATCGGAAAAACT 59.224 41.667 0.00 0.00 31.13 2.66
690 722 5.954150 AGTAGTCCTGGTATCGGAAAAACTA 59.046 40.000 0.00 0.00 31.13 2.24
701 733 6.575162 ATCGGAAAAACTAAAAGCAGACAT 57.425 33.333 0.00 0.00 0.00 3.06
760 792 0.373716 GACATTTGGCGATGTCCGTC 59.626 55.000 17.97 0.00 46.48 4.79
764 796 0.953471 TTTGGCGATGTCCGTCCTTG 60.953 55.000 0.00 0.00 43.37 3.61
771 803 2.767505 GATGTCCGTCCTTGTTCACTT 58.232 47.619 0.00 0.00 0.00 3.16
776 808 1.567504 CGTCCTTGTTCACTTCGTGT 58.432 50.000 0.00 0.00 34.79 4.49
780 812 4.376008 CGTCCTTGTTCACTTCGTGTATTG 60.376 45.833 0.00 0.00 34.79 1.90
795 827 5.878116 TCGTGTATTGCTTTAGCCAAGTTAT 59.122 36.000 0.00 0.00 41.18 1.89
796 828 6.373216 TCGTGTATTGCTTTAGCCAAGTTATT 59.627 34.615 0.00 0.00 41.18 1.40
797 829 7.549842 TCGTGTATTGCTTTAGCCAAGTTATTA 59.450 33.333 0.00 0.00 41.18 0.98
824 856 7.739498 ATCTACAACGTTTGACCAAGTTTAT 57.261 32.000 0.00 0.00 0.00 1.40
915 1018 7.531716 ACATGGCATTTAATTCTTGCAATTTG 58.468 30.769 0.00 0.00 38.12 2.32
936 1042 9.753674 AATTTGTGGATTCTTTCTATTCCTGTA 57.246 29.630 0.00 0.00 0.00 2.74
981 1087 0.885879 CAAACCGGCCCTAAAAGTCC 59.114 55.000 0.00 0.00 0.00 3.85
1378 1528 1.628846 AGGTGAGGAACGGCTTGTTAT 59.371 47.619 0.00 0.00 42.09 1.89
1379 1529 2.039879 AGGTGAGGAACGGCTTGTTATT 59.960 45.455 0.00 0.00 42.09 1.40
1380 1530 3.262405 AGGTGAGGAACGGCTTGTTATTA 59.738 43.478 0.00 0.00 42.09 0.98
1385 1540 4.439968 AGGAACGGCTTGTTATTAGCTAC 58.560 43.478 0.00 0.00 42.09 3.58
1397 1556 7.526142 TGTTATTAGCTACATAGTGGAGGAG 57.474 40.000 0.00 0.00 0.00 3.69
1415 1574 4.729868 AGGAGTTTACCTCTGCATGTTTT 58.270 39.130 0.00 0.00 40.30 2.43
1447 1610 1.400846 GTGCTGAGCCATGTTCATCAG 59.599 52.381 0.23 8.54 41.68 2.90
1468 1631 4.792528 GCTTTTGCATGTGCTTTGTTTA 57.207 36.364 6.55 0.00 46.58 2.01
1481 1644 1.310904 TTGTTTAGCCTCGCGGTTTT 58.689 45.000 6.13 0.00 0.00 2.43
1522 1692 2.363788 TGCTTGAGTAGGTAGTTGCG 57.636 50.000 0.00 0.00 0.00 4.85
1523 1693 1.890489 TGCTTGAGTAGGTAGTTGCGA 59.110 47.619 0.00 0.00 0.00 5.10
1550 1726 3.130340 GGTGGTTGCTTGTTCTCTTTGAA 59.870 43.478 0.00 0.00 0.00 2.69
1667 1861 1.272092 CCCTGTTTCTGGATGAAGCCA 60.272 52.381 0.00 0.00 35.41 4.75
1708 1922 2.319747 TCCCTACCCTTACATCCAGGAA 59.680 50.000 0.00 0.00 32.41 3.36
1745 1959 5.305644 CCCTCCACTGCTGATAGTTAATACT 59.694 44.000 0.00 0.00 38.44 2.12
1746 1960 6.183361 CCCTCCACTGCTGATAGTTAATACTT 60.183 42.308 0.00 0.00 35.78 2.24
1747 1961 6.926272 CCTCCACTGCTGATAGTTAATACTTC 59.074 42.308 0.00 0.00 35.78 3.01
1748 1962 6.817184 TCCACTGCTGATAGTTAATACTTCC 58.183 40.000 0.00 0.00 35.78 3.46
1749 1963 6.611642 TCCACTGCTGATAGTTAATACTTCCT 59.388 38.462 0.00 0.00 35.78 3.36
1750 1964 6.926272 CCACTGCTGATAGTTAATACTTCCTC 59.074 42.308 0.00 0.00 35.78 3.71
1751 1965 6.926272 CACTGCTGATAGTTAATACTTCCTCC 59.074 42.308 0.00 0.00 35.78 4.30
1752 1966 6.085555 TGCTGATAGTTAATACTTCCTCCG 57.914 41.667 0.00 0.00 35.78 4.63
1753 1967 5.597182 TGCTGATAGTTAATACTTCCTCCGT 59.403 40.000 0.00 0.00 35.78 4.69
1754 1968 6.151004 GCTGATAGTTAATACTTCCTCCGTC 58.849 44.000 0.00 0.00 35.78 4.79
1755 1969 6.645790 TGATAGTTAATACTTCCTCCGTCC 57.354 41.667 0.00 0.00 35.78 4.79
1756 1970 5.537674 TGATAGTTAATACTTCCTCCGTCCC 59.462 44.000 0.00 0.00 35.78 4.46
1757 1971 3.716431 AGTTAATACTTCCTCCGTCCCA 58.284 45.455 0.00 0.00 0.00 4.37
1758 1972 4.296056 AGTTAATACTTCCTCCGTCCCAT 58.704 43.478 0.00 0.00 0.00 4.00
1759 1973 5.461327 AGTTAATACTTCCTCCGTCCCATA 58.539 41.667 0.00 0.00 0.00 2.74
1760 1974 5.901276 AGTTAATACTTCCTCCGTCCCATAA 59.099 40.000 0.00 0.00 0.00 1.90
1761 1975 6.557633 AGTTAATACTTCCTCCGTCCCATAAT 59.442 38.462 0.00 0.00 0.00 1.28
1762 1976 7.731688 AGTTAATACTTCCTCCGTCCCATAATA 59.268 37.037 0.00 0.00 0.00 0.98
1763 1977 8.537858 GTTAATACTTCCTCCGTCCCATAATAT 58.462 37.037 0.00 0.00 0.00 1.28
1764 1978 9.772605 TTAATACTTCCTCCGTCCCATAATATA 57.227 33.333 0.00 0.00 0.00 0.86
1765 1979 8.674925 AATACTTCCTCCGTCCCATAATATAA 57.325 34.615 0.00 0.00 0.00 0.98
1766 1980 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
1767 1981 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
1768 1982 6.437793 ACTTCCTCCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
1769 1983 4.710375 TCCTCCGTCCCATAATATAAGAGC 59.290 45.833 0.00 0.00 0.00 4.09
1770 1984 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1771 1985 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1772 1986 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
1773 1987 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1774 1988 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
1775 1989 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
1776 1990 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
1777 1991 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
1778 1992 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
1779 1993 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
1780 1994 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
1781 1995 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
1784 1998 3.879932 AAGAGCGTTTTTGACACTAGC 57.120 42.857 0.00 0.00 0.00 3.42
1785 1999 1.792949 AGAGCGTTTTTGACACTAGCG 59.207 47.619 0.00 0.00 0.00 4.26
1786 2000 1.525619 GAGCGTTTTTGACACTAGCGT 59.474 47.619 0.00 0.00 0.00 5.07
1787 2001 1.937899 AGCGTTTTTGACACTAGCGTT 59.062 42.857 0.00 0.00 0.00 4.84
1788 2002 2.353579 AGCGTTTTTGACACTAGCGTTT 59.646 40.909 0.00 0.00 0.00 3.60
1789 2003 3.103007 GCGTTTTTGACACTAGCGTTTT 58.897 40.909 0.00 0.00 0.00 2.43
1790 2004 3.544682 GCGTTTTTGACACTAGCGTTTTT 59.455 39.130 0.00 0.00 0.00 1.94
1814 2028 1.382692 GGAGTACTCCCTCCGTTCCG 61.383 65.000 28.87 0.00 43.94 4.30
1817 2031 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
1820 2034 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1821 2035 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1822 2036 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1828 2042 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
1829 2043 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
1830 2044 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
1831 2045 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
1832 2046 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
1833 2047 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
1836 2050 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
1843 2057 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
1844 2058 7.907389 ACTTGTCTTGGATTTGTCTAGATACA 58.093 34.615 0.00 0.00 0.00 2.29
1845 2059 8.037758 ACTTGTCTTGGATTTGTCTAGATACAG 58.962 37.037 0.00 0.00 0.00 2.74
1847 2061 8.311395 TGTCTTGGATTTGTCTAGATACAGAT 57.689 34.615 0.00 0.00 0.00 2.90
1848 2062 8.200120 TGTCTTGGATTTGTCTAGATACAGATG 58.800 37.037 0.00 0.00 0.00 2.90
1877 2091 8.904834 TCTAGACTCATTTTAGTGTCAGATACC 58.095 37.037 0.00 0.00 35.17 2.73
1878 2092 7.726033 AGACTCATTTTAGTGTCAGATACCT 57.274 36.000 0.00 0.00 35.17 3.08
1879 2093 7.777095 AGACTCATTTTAGTGTCAGATACCTC 58.223 38.462 0.00 0.00 35.17 3.85
1880 2094 6.879400 ACTCATTTTAGTGTCAGATACCTCC 58.121 40.000 0.00 0.00 0.00 4.30
1881 2095 5.902681 TCATTTTAGTGTCAGATACCTCCG 58.097 41.667 0.00 0.00 0.00 4.63
1882 2096 5.421056 TCATTTTAGTGTCAGATACCTCCGT 59.579 40.000 0.00 0.00 0.00 4.69
1883 2097 6.604396 TCATTTTAGTGTCAGATACCTCCGTA 59.396 38.462 0.00 0.00 0.00 4.02
1884 2098 7.287005 TCATTTTAGTGTCAGATACCTCCGTAT 59.713 37.037 0.00 0.00 37.92 3.06
1896 2110 6.837471 ATACCTCCGTATCTAGACAAATCC 57.163 41.667 0.00 0.00 28.45 3.01
1897 2111 4.543689 ACCTCCGTATCTAGACAAATCCA 58.456 43.478 0.00 0.00 0.00 3.41
1898 2112 4.960469 ACCTCCGTATCTAGACAAATCCAA 59.040 41.667 0.00 0.00 0.00 3.53
1899 2113 5.069251 ACCTCCGTATCTAGACAAATCCAAG 59.931 44.000 0.00 0.00 0.00 3.61
1900 2114 5.302059 CCTCCGTATCTAGACAAATCCAAGA 59.698 44.000 0.00 0.00 0.00 3.02
1901 2115 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
1902 2116 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
1903 2117 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
1904 2118 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
1907 2121 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
1910 2124 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
1911 2125 9.219603 CTAGACAAATCCAAGACAAGTAATTCA 57.780 33.333 0.00 0.00 0.00 2.57
1922 2136 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
1924 2138 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
2037 2254 6.816140 ACCCTTAAGATGTTGTTTTTGTTGTG 59.184 34.615 3.36 0.00 0.00 3.33
2135 2423 4.080582 TCCGAGGAAATCTTAGCCATTTCA 60.081 41.667 8.12 0.00 40.60 2.69
2146 2434 2.590821 AGCCATTTCAAGTGACTGCTT 58.409 42.857 0.00 0.00 0.00 3.91
2199 2487 2.746359 GCTCCTATGGCGGCATCT 59.254 61.111 29.33 9.33 0.00 2.90
2242 2551 4.804139 ACGAACATGATATGAAGGACGAAC 59.196 41.667 0.00 0.00 0.00 3.95
2250 2565 0.468226 TGAAGGACGAACAACAGGCT 59.532 50.000 0.00 0.00 0.00 4.58
2251 2566 0.868406 GAAGGACGAACAACAGGCTG 59.132 55.000 14.16 14.16 0.00 4.85
2252 2567 0.468226 AAGGACGAACAACAGGCTGA 59.532 50.000 23.66 0.00 0.00 4.26
2253 2568 0.034059 AGGACGAACAACAGGCTGAG 59.966 55.000 23.66 15.41 0.00 3.35
2254 2569 0.033504 GGACGAACAACAGGCTGAGA 59.966 55.000 23.66 0.00 0.00 3.27
2255 2570 1.540363 GGACGAACAACAGGCTGAGAA 60.540 52.381 23.66 0.00 0.00 2.87
2256 2571 1.795286 GACGAACAACAGGCTGAGAAG 59.205 52.381 23.66 9.88 0.00 2.85
2257 2572 1.151668 CGAACAACAGGCTGAGAAGG 58.848 55.000 23.66 7.72 0.00 3.46
2258 2573 1.270305 CGAACAACAGGCTGAGAAGGA 60.270 52.381 23.66 0.00 0.00 3.36
2259 2574 2.147150 GAACAACAGGCTGAGAAGGAC 58.853 52.381 23.66 2.55 0.00 3.85
2260 2575 0.034059 ACAACAGGCTGAGAAGGACG 59.966 55.000 23.66 2.40 0.00 4.79
2261 2576 0.318441 CAACAGGCTGAGAAGGACGA 59.682 55.000 23.66 0.00 0.00 4.20
2262 2577 1.048601 AACAGGCTGAGAAGGACGAA 58.951 50.000 23.66 0.00 0.00 3.85
2263 2578 1.048601 ACAGGCTGAGAAGGACGAAA 58.951 50.000 23.66 0.00 0.00 3.46
2264 2579 1.416401 ACAGGCTGAGAAGGACGAAAA 59.584 47.619 23.66 0.00 0.00 2.29
2265 2580 2.158813 ACAGGCTGAGAAGGACGAAAAA 60.159 45.455 23.66 0.00 0.00 1.94
2266 2581 2.224314 CAGGCTGAGAAGGACGAAAAAC 59.776 50.000 9.42 0.00 0.00 2.43
2267 2582 2.158813 AGGCTGAGAAGGACGAAAAACA 60.159 45.455 0.00 0.00 0.00 2.83
2268 2583 2.224314 GGCTGAGAAGGACGAAAAACAG 59.776 50.000 0.00 0.00 0.00 3.16
2269 2584 2.224314 GCTGAGAAGGACGAAAAACAGG 59.776 50.000 0.00 0.00 0.00 4.00
2270 2585 2.218603 TGAGAAGGACGAAAAACAGGC 58.781 47.619 0.00 0.00 0.00 4.85
2728 3043 5.963586 GTGAAGTGGTTGTTTCTTTACTTCG 59.036 40.000 0.00 0.00 44.10 3.79
2752 3071 9.778993 TCGTTACTGTTCTTATTATGTACTCAC 57.221 33.333 0.00 0.00 0.00 3.51
2753 3072 9.784680 CGTTACTGTTCTTATTATGTACTCACT 57.215 33.333 0.00 0.00 0.00 3.41
2756 3075 7.481642 ACTGTTCTTATTATGTACTCACTCCG 58.518 38.462 0.00 0.00 0.00 4.63
2757 3076 7.122353 ACTGTTCTTATTATGTACTCACTCCGT 59.878 37.037 0.00 0.00 0.00 4.69
2759 3078 6.630444 TCTTATTATGTACTCACTCCGTCC 57.370 41.667 0.00 0.00 0.00 4.79
2760 3079 5.533903 TCTTATTATGTACTCACTCCGTCCC 59.466 44.000 0.00 0.00 0.00 4.46
2761 3080 2.812836 TATGTACTCACTCCGTCCCA 57.187 50.000 0.00 0.00 0.00 4.37
2762 3081 1.933021 ATGTACTCACTCCGTCCCAA 58.067 50.000 0.00 0.00 0.00 4.12
2763 3082 1.707106 TGTACTCACTCCGTCCCAAA 58.293 50.000 0.00 0.00 0.00 3.28
2764 3083 2.040939 TGTACTCACTCCGTCCCAAAA 58.959 47.619 0.00 0.00 0.00 2.44
2765 3084 2.635915 TGTACTCACTCCGTCCCAAAAT 59.364 45.455 0.00 0.00 0.00 1.82
2766 3085 3.833650 TGTACTCACTCCGTCCCAAAATA 59.166 43.478 0.00 0.00 0.00 1.40
2767 3086 4.283978 TGTACTCACTCCGTCCCAAAATAA 59.716 41.667 0.00 0.00 0.00 1.40
2768 3087 3.939066 ACTCACTCCGTCCCAAAATAAG 58.061 45.455 0.00 0.00 0.00 1.73
2769 3088 3.326880 ACTCACTCCGTCCCAAAATAAGT 59.673 43.478 0.00 0.00 0.00 2.24
2770 3089 3.670625 TCACTCCGTCCCAAAATAAGTG 58.329 45.455 0.00 0.00 35.20 3.16
2771 3090 3.071892 TCACTCCGTCCCAAAATAAGTGT 59.928 43.478 0.00 0.00 35.37 3.55
2772 3091 3.435671 CACTCCGTCCCAAAATAAGTGTC 59.564 47.826 0.00 0.00 0.00 3.67
2773 3092 3.326880 ACTCCGTCCCAAAATAAGTGTCT 59.673 43.478 0.00 0.00 0.00 3.41
2774 3093 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2775 3094 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2776 3095 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2777 3096 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2778 3097 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2779 3098 5.107065 CGTCCCAAAATAAGTGTCTCAACTC 60.107 44.000 0.00 0.00 0.00 3.01
2780 3099 5.998363 GTCCCAAAATAAGTGTCTCAACTCT 59.002 40.000 0.00 0.00 0.00 3.24
2781 3100 7.159372 GTCCCAAAATAAGTGTCTCAACTCTA 58.841 38.462 0.00 0.00 0.00 2.43
2782 3101 7.332182 GTCCCAAAATAAGTGTCTCAACTCTAG 59.668 40.741 0.00 0.00 0.00 2.43
2783 3102 7.016268 TCCCAAAATAAGTGTCTCAACTCTAGT 59.984 37.037 0.00 0.00 0.00 2.57
2784 3103 8.311836 CCCAAAATAAGTGTCTCAACTCTAGTA 58.688 37.037 0.00 0.00 0.00 1.82
2785 3104 9.877178 CCAAAATAAGTGTCTCAACTCTAGTAT 57.123 33.333 0.00 0.00 0.00 2.12
2792 3111 9.915629 AAGTGTCTCAACTCTAGTATAACTTTG 57.084 33.333 0.00 0.00 0.00 2.77
2793 3112 9.080097 AGTGTCTCAACTCTAGTATAACTTTGT 57.920 33.333 0.00 0.00 0.00 2.83
2820 3139 9.310716 ACTAAAGTTACTACAAAGTTGAGACAC 57.689 33.333 0.00 0.00 37.15 3.67
2821 3140 9.530633 CTAAAGTTACTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 37.15 3.55
2822 3141 8.788325 AAAGTTACTACAAAGTTGAGACACTT 57.212 30.769 0.00 3.42 38.74 3.16
2823 3142 8.421673 AAGTTACTACAAAGTTGAGACACTTC 57.578 34.615 0.00 0.00 35.87 3.01
2824 3143 7.783042 AGTTACTACAAAGTTGAGACACTTCT 58.217 34.615 0.00 0.00 35.87 2.85
2825 3144 8.258708 AGTTACTACAAAGTTGAGACACTTCTT 58.741 33.333 0.00 0.00 35.87 2.52
2826 3145 8.880750 GTTACTACAAAGTTGAGACACTTCTTT 58.119 33.333 0.00 0.00 35.87 2.52
2827 3146 7.923414 ACTACAAAGTTGAGACACTTCTTTT 57.077 32.000 0.00 0.00 35.87 2.27
2828 3147 7.752695 ACTACAAAGTTGAGACACTTCTTTTG 58.247 34.615 0.00 0.00 35.87 2.44
2829 3148 5.954335 ACAAAGTTGAGACACTTCTTTTGG 58.046 37.500 0.00 0.00 35.87 3.28
2830 3149 5.105756 ACAAAGTTGAGACACTTCTTTTGGG 60.106 40.000 0.00 0.00 35.87 4.12
2831 3150 4.503714 AGTTGAGACACTTCTTTTGGGA 57.496 40.909 0.00 0.00 29.47 4.37
2832 3151 4.200092 AGTTGAGACACTTCTTTTGGGAC 58.800 43.478 0.00 0.00 29.47 4.46
2833 3152 2.833794 TGAGACACTTCTTTTGGGACG 58.166 47.619 0.00 0.00 29.47 4.79
2834 3153 2.143925 GAGACACTTCTTTTGGGACGG 58.856 52.381 0.00 0.00 29.47 4.79
2835 3154 1.766496 AGACACTTCTTTTGGGACGGA 59.234 47.619 0.00 0.00 0.00 4.69
2836 3155 2.143925 GACACTTCTTTTGGGACGGAG 58.856 52.381 0.00 0.00 0.00 4.63
2837 3156 1.202770 ACACTTCTTTTGGGACGGAGG 60.203 52.381 0.00 0.00 0.00 4.30
2838 3157 0.400594 ACTTCTTTTGGGACGGAGGG 59.599 55.000 0.00 0.00 0.00 4.30
2839 3158 0.690762 CTTCTTTTGGGACGGAGGGA 59.309 55.000 0.00 0.00 0.00 4.20
2840 3159 0.690762 TTCTTTTGGGACGGAGGGAG 59.309 55.000 0.00 0.00 0.00 4.30
2841 3160 0.473117 TCTTTTGGGACGGAGGGAGT 60.473 55.000 0.00 0.00 0.00 3.85
2967 3306 5.588240 TGAGAATTTTGATGATGATGCTGC 58.412 37.500 0.00 0.00 0.00 5.25
3039 3378 7.556275 TCCGAGCCATAATTTCATTAAACTCTT 59.444 33.333 0.00 0.00 0.00 2.85
3204 3543 5.684704 CATTATAAGGTCAAGCTGGGAGAA 58.315 41.667 0.00 0.00 0.00 2.87
3212 3551 3.449018 GTCAAGCTGGGAGAAGACTGATA 59.551 47.826 0.00 0.00 0.00 2.15
3219 3558 3.012959 TGGGAGAAGACTGATAGGTTCCT 59.987 47.826 0.00 0.00 0.00 3.36
3241 3580 1.878656 CGTTCAAGCTCCTCCCTCGT 61.879 60.000 0.00 0.00 0.00 4.18
3356 3695 3.307059 GGCTAGTTCTCATCTTGTGGTGT 60.307 47.826 0.00 0.00 0.00 4.16
3363 3702 4.510571 TCTCATCTTGTGGTGTGATGATG 58.489 43.478 0.00 0.00 43.48 3.07
3458 3805 7.807687 AGTGTAACAACAGTCGATACATTAC 57.192 36.000 0.00 0.00 41.43 1.89
3461 3808 7.460637 GTGTAACAACAGTCGATACATTACGAC 60.461 40.741 10.92 10.92 46.77 4.34
3485 3837 3.620427 TTGATGGTACGCTTGGTGTAT 57.380 42.857 0.00 0.00 31.13 2.29
3517 3870 3.107601 TGTATGACCTCCAAGCTTAGCT 58.892 45.455 0.00 0.00 42.56 3.32
3581 3937 5.166398 GCATTGCTTCAAACTTGCTTATCT 58.834 37.500 0.16 0.00 0.00 1.98
3637 4079 1.622811 AGTTCTGCTGCTAGCTTGAGT 59.377 47.619 17.23 0.00 42.97 3.41
3678 4120 0.385390 CCTGAAGGTGTGTTGTTGCC 59.615 55.000 0.00 0.00 0.00 4.52
3755 4202 3.070878 TCAGAGTCACAAGTGCCATGTTA 59.929 43.478 0.00 0.00 0.00 2.41
3862 4313 1.367471 GGCAAGCAAGGTTTGTCCC 59.633 57.895 0.00 0.00 36.75 4.46
3919 4371 8.504005 CACGTATTCTCTCCTTGTGTTAATTTT 58.496 33.333 0.00 0.00 0.00 1.82
3957 4409 1.063806 CTCGTCAGCTGTGTTGCTAC 58.936 55.000 14.67 1.17 41.98 3.58
4114 4576 3.195182 TCTCATCTGCTTCTTCTCAGGTG 59.805 47.826 0.00 0.00 41.51 4.00
4132 4594 4.940046 CAGGTGCTACTCTTCACAATCAAT 59.060 41.667 0.00 0.00 35.04 2.57
4134 4596 6.595326 CAGGTGCTACTCTTCACAATCAATTA 59.405 38.462 0.00 0.00 35.04 1.40
4136 4598 7.831193 AGGTGCTACTCTTCACAATCAATTATT 59.169 33.333 0.00 0.00 35.04 1.40
4137 4599 8.462016 GGTGCTACTCTTCACAATCAATTATTT 58.538 33.333 0.00 0.00 35.04 1.40
4138 4600 9.846248 GTGCTACTCTTCACAATCAATTATTTT 57.154 29.630 0.00 0.00 33.63 1.82
4140 4602 9.508567 GCTACTCTTCACAATCAATTATTTTCC 57.491 33.333 0.00 0.00 0.00 3.13
4143 4605 9.525826 ACTCTTCACAATCAATTATTTTCCTCT 57.474 29.630 0.00 0.00 0.00 3.69
4144 4606 9.784680 CTCTTCACAATCAATTATTTTCCTCTG 57.215 33.333 0.00 0.00 0.00 3.35
4200 4666 3.441572 GGGATGAGATTGTGTCAGGTTTG 59.558 47.826 0.00 0.00 0.00 2.93
4221 4688 4.697514 TGTGACTGCTAGAATAGAATGGC 58.302 43.478 0.00 0.00 42.77 4.40
4232 4699 4.957954 AGAATAGAATGGCATGCTTTGGAA 59.042 37.500 14.49 0.00 0.00 3.53
4286 4774 2.582728 TTGCCTTGCACTCTGTTTTG 57.417 45.000 0.00 0.00 38.71 2.44
4292 4780 4.261572 GCCTTGCACTCTGTTTTGAATGTA 60.262 41.667 0.00 0.00 0.00 2.29
4293 4781 5.215160 CCTTGCACTCTGTTTTGAATGTAC 58.785 41.667 0.00 0.00 0.00 2.90
4294 4782 5.221028 CCTTGCACTCTGTTTTGAATGTACA 60.221 40.000 0.00 0.00 0.00 2.90
4295 4783 5.422666 TGCACTCTGTTTTGAATGTACAG 57.577 39.130 0.33 0.00 40.42 2.74
4296 4784 4.881273 TGCACTCTGTTTTGAATGTACAGT 59.119 37.500 0.33 0.00 40.08 3.55
4297 4785 5.207768 GCACTCTGTTTTGAATGTACAGTG 58.792 41.667 0.00 0.00 40.08 3.66
4298 4786 5.220854 GCACTCTGTTTTGAATGTACAGTGT 60.221 40.000 0.00 0.00 43.43 3.55
4299 4787 6.018262 GCACTCTGTTTTGAATGTACAGTGTA 60.018 38.462 0.00 0.00 41.80 2.90
4300 4788 7.567571 CACTCTGTTTTGAATGTACAGTGTAG 58.432 38.462 0.00 0.00 41.80 2.74
4349 4837 5.812642 GTCAGGACATACTCAACATAAGTGG 59.187 44.000 0.00 0.00 0.00 4.00
4352 4840 7.050377 CAGGACATACTCAACATAAGTGGAAT 58.950 38.462 0.00 0.00 0.00 3.01
4353 4841 7.225538 CAGGACATACTCAACATAAGTGGAATC 59.774 40.741 0.00 0.00 0.00 2.52
4397 4886 2.894763 TTGCCAATGCCATAGATTGC 57.105 45.000 0.00 0.00 36.33 3.56
4398 4887 2.076207 TGCCAATGCCATAGATTGCT 57.924 45.000 0.00 0.00 36.33 3.91
4400 4889 2.101750 TGCCAATGCCATAGATTGCTTG 59.898 45.455 0.00 0.00 36.33 4.01
4417 4906 5.728637 TGCTTGTCTCTGAAGATCAGTTA 57.271 39.130 7.21 0.00 44.58 2.24
4430 4923 8.654230 TGAAGATCAGTTAATCAGATTGCTAC 57.346 34.615 5.85 1.97 0.00 3.58
4463 5045 6.371548 TGCAGTAGTATTAACTGAAGCCAAAG 59.628 38.462 7.39 0.00 45.89 2.77
4464 5046 6.371825 GCAGTAGTATTAACTGAAGCCAAAGT 59.628 38.462 7.39 0.00 45.89 2.66
4469 5051 5.767816 ATTAACTGAAGCCAAAGTCGTTT 57.232 34.783 0.00 0.00 0.00 3.60
4475 5057 3.923461 TGAAGCCAAAGTCGTTTTTGTTG 59.077 39.130 11.44 0.00 36.54 3.33
4497 5080 1.203038 TGTTGTGATGACAGGGGCAAT 60.203 47.619 0.00 0.00 32.26 3.56
4503 5086 1.866483 ATGACAGGGGCAATGAGGCA 61.866 55.000 0.00 0.00 46.44 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.922503 TGGGCCTTCGTCTCAGCA 60.923 61.111 4.53 0.00 0.00 4.41
34 35 2.125350 CTGGGCCTTCGTCTCAGC 60.125 66.667 4.53 0.00 0.00 4.26
43 44 1.831652 CGTTGTCTCCTCTGGGCCTT 61.832 60.000 4.53 0.00 0.00 4.35
50 51 1.689273 ACAAAGCTCGTTGTCTCCTCT 59.311 47.619 0.00 0.00 37.10 3.69
58 59 0.655733 ACCGTGAACAAAGCTCGTTG 59.344 50.000 6.23 1.46 34.52 4.10
83 84 0.471191 TTCCTGCTGCATCCATCGAT 59.529 50.000 1.31 0.00 0.00 3.59
97 98 3.004839 TGAGTGTCGAAGTCTTCTTCCTG 59.995 47.826 10.81 0.00 45.02 3.86
167 170 9.942850 AAATAGCATAAACCTTTAAAACAGCAT 57.057 25.926 0.00 0.00 0.00 3.79
298 304 9.658799 CTCCCTATGATTCATATTAATTGTCGT 57.341 33.333 6.82 0.00 0.00 4.34
424 451 7.951591 TGCTTGCCTAGAAAATAGAACTTTTT 58.048 30.769 0.00 0.00 0.00 1.94
469 496 4.598022 TCCATGCAGGTAATTCAATCACA 58.402 39.130 0.00 0.00 39.02 3.58
483 510 0.471191 TGCCCTAGACATCCATGCAG 59.529 55.000 0.00 0.00 0.00 4.41
485 512 2.057137 TTTGCCCTAGACATCCATGC 57.943 50.000 0.00 0.00 0.00 4.06
516 543 6.612247 TTTGAGAAGCGTTTTGAAGTATCA 57.388 33.333 0.00 0.00 0.00 2.15
520 547 5.054390 TGTTTTGAGAAGCGTTTTGAAGT 57.946 34.783 0.00 0.00 0.00 3.01
680 709 7.306574 GGAAAATGTCTGCTTTTAGTTTTTCCG 60.307 37.037 7.77 0.00 40.26 4.30
688 720 4.215399 TCCGTGGAAAATGTCTGCTTTTAG 59.785 41.667 0.00 0.00 0.00 1.85
689 721 4.023536 GTCCGTGGAAAATGTCTGCTTTTA 60.024 41.667 0.00 0.00 0.00 1.52
690 722 2.955660 TCCGTGGAAAATGTCTGCTTTT 59.044 40.909 0.00 0.00 0.00 2.27
729 761 2.436417 CCAAATGTCCATGGAGACGTT 58.564 47.619 16.81 10.01 45.67 3.99
771 803 3.670625 ACTTGGCTAAAGCAATACACGA 58.329 40.909 4.07 0.00 44.36 4.35
795 827 7.987649 ACTTGGTCAAACGTTGTAGATTTTAA 58.012 30.769 0.00 0.00 0.00 1.52
796 828 7.556733 ACTTGGTCAAACGTTGTAGATTTTA 57.443 32.000 0.00 0.00 0.00 1.52
797 829 6.445357 ACTTGGTCAAACGTTGTAGATTTT 57.555 33.333 0.00 0.00 0.00 1.82
915 1018 9.267084 GAGAATACAGGAATAGAAAGAATCCAC 57.733 37.037 0.00 0.00 34.30 4.02
936 1042 1.618487 GGACGACGGGATAGGAGAAT 58.382 55.000 0.00 0.00 0.00 2.40
961 1067 0.242825 GACTTTTAGGGCCGGTTTGC 59.757 55.000 1.90 0.00 0.00 3.68
967 1073 1.378119 GGTGGGACTTTTAGGGCCG 60.378 63.158 0.00 0.00 0.00 6.13
981 1087 1.524008 GCCTGTCCGGAAAAAGGTGG 61.524 60.000 23.32 10.85 33.16 4.61
1378 1528 6.323225 GGTAAACTCCTCCACTATGTAGCTAA 59.677 42.308 0.00 0.00 0.00 3.09
1379 1529 5.832060 GGTAAACTCCTCCACTATGTAGCTA 59.168 44.000 0.00 0.00 0.00 3.32
1380 1530 4.650131 GGTAAACTCCTCCACTATGTAGCT 59.350 45.833 0.00 0.00 0.00 3.32
1397 1556 7.119846 ACTCAGATAAAACATGCAGAGGTAAAC 59.880 37.037 0.00 0.00 0.00 2.01
1405 1564 6.255950 CACATGACTCAGATAAAACATGCAG 58.744 40.000 0.00 0.00 38.70 4.41
1415 1574 2.102084 GGCTCAGCACATGACTCAGATA 59.898 50.000 0.00 0.00 33.22 1.98
1447 1610 3.678915 AAACAAAGCACATGCAAAAGC 57.321 38.095 6.64 0.00 45.16 3.51
1458 1621 1.866237 CGCGAGGCTAAACAAAGCA 59.134 52.632 0.00 0.00 44.64 3.91
1481 1644 3.822940 TCGGCAGGGAAAGTTAAAAAGA 58.177 40.909 0.00 0.00 0.00 2.52
1522 1692 1.000843 GAACAAGCAACCACCCCAATC 59.999 52.381 0.00 0.00 0.00 2.67
1523 1693 1.047801 GAACAAGCAACCACCCCAAT 58.952 50.000 0.00 0.00 0.00 3.16
1550 1726 8.107095 TCCATTAGTAGAAACCTACAAATTGCT 58.893 33.333 0.00 0.00 39.12 3.91
1667 1861 5.907079 AGGGATATGGCTCCAAAAATTTCAT 59.093 36.000 0.00 0.00 37.01 2.57
1708 1922 4.848357 CAGTGGAGGGTTGTTCATCTATT 58.152 43.478 0.00 0.00 0.00 1.73
1745 1959 5.187186 GCTCTTATATTATGGGACGGAGGAA 59.813 44.000 0.00 0.00 0.00 3.36
1746 1960 4.710375 GCTCTTATATTATGGGACGGAGGA 59.290 45.833 0.00 0.00 0.00 3.71
1747 1961 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
1748 1962 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
1749 1963 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
1750 1964 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
1751 1965 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1752 1966 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
1753 1967 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
1754 1968 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
1755 1969 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
1758 1972 8.814235 GCTAGTGTCAAAAACGCTCTTATATTA 58.186 33.333 0.00 0.00 45.69 0.98
1759 1973 7.464178 CGCTAGTGTCAAAAACGCTCTTATATT 60.464 37.037 0.00 0.00 45.69 1.28
1760 1974 6.019801 CGCTAGTGTCAAAAACGCTCTTATAT 60.020 38.462 0.00 0.00 45.69 0.86
1761 1975 5.287752 CGCTAGTGTCAAAAACGCTCTTATA 59.712 40.000 0.00 0.00 45.69 0.98
1762 1976 4.091509 CGCTAGTGTCAAAAACGCTCTTAT 59.908 41.667 0.00 0.00 45.69 1.73
1763 1977 3.427528 CGCTAGTGTCAAAAACGCTCTTA 59.572 43.478 0.00 0.00 45.69 2.10
1764 1978 2.221055 CGCTAGTGTCAAAAACGCTCTT 59.779 45.455 0.00 0.00 45.69 2.85
1765 1979 1.792949 CGCTAGTGTCAAAAACGCTCT 59.207 47.619 0.00 0.00 45.69 4.09
1766 1980 1.525619 ACGCTAGTGTCAAAAACGCTC 59.474 47.619 2.24 0.00 45.69 5.03
1768 1982 2.378507 AACGCTAGTGTCAAAAACGC 57.621 45.000 9.86 0.00 38.74 4.84
1814 2028 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
1817 2031 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
1820 2034 8.253810 TCTGTATCTAGACAAATCCAAGACAAG 58.746 37.037 0.00 0.00 0.00 3.16
1821 2035 8.134202 TCTGTATCTAGACAAATCCAAGACAA 57.866 34.615 0.00 0.00 0.00 3.18
1822 2036 7.718334 TCTGTATCTAGACAAATCCAAGACA 57.282 36.000 0.00 0.00 0.00 3.41
1847 2061 9.462606 TCTGACACTAAAATGAGTCTAGATACA 57.537 33.333 0.00 0.00 32.41 2.29
1851 2065 8.904834 GGTATCTGACACTAAAATGAGTCTAGA 58.095 37.037 0.00 0.00 32.41 2.43
1852 2066 8.908903 AGGTATCTGACACTAAAATGAGTCTAG 58.091 37.037 0.00 0.00 32.41 2.43
1854 2068 7.147811 GGAGGTATCTGACACTAAAATGAGTCT 60.148 40.741 0.00 0.00 32.41 3.24
1855 2069 6.981559 GGAGGTATCTGACACTAAAATGAGTC 59.018 42.308 0.00 0.00 0.00 3.36
1857 2071 5.980116 CGGAGGTATCTGACACTAAAATGAG 59.020 44.000 0.00 0.00 33.17 2.90
1858 2072 5.421056 ACGGAGGTATCTGACACTAAAATGA 59.579 40.000 0.00 0.00 35.61 2.57
1859 2073 5.661458 ACGGAGGTATCTGACACTAAAATG 58.339 41.667 0.00 0.00 35.61 2.32
1874 2088 5.698104 TGGATTTGTCTAGATACGGAGGTA 58.302 41.667 0.00 0.00 0.00 3.08
1875 2089 4.543689 TGGATTTGTCTAGATACGGAGGT 58.456 43.478 0.00 0.00 0.00 3.85
1876 2090 5.302059 TCTTGGATTTGTCTAGATACGGAGG 59.698 44.000 0.00 0.00 0.00 4.30
1877 2091 6.183360 TGTCTTGGATTTGTCTAGATACGGAG 60.183 42.308 0.00 0.00 0.00 4.63
1878 2092 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
1879 2093 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
1880 2094 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
1881 2095 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
1883 2097 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
1884 2098 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
1885 2099 9.219603 TGAATTACTTGTCTTGGATTTGTCTAG 57.780 33.333 0.00 0.00 0.00 2.43
1886 2100 9.219603 CTGAATTACTTGTCTTGGATTTGTCTA 57.780 33.333 0.00 0.00 0.00 2.59
1887 2101 7.939039 TCTGAATTACTTGTCTTGGATTTGTCT 59.061 33.333 0.00 0.00 0.00 3.41
1888 2102 8.099364 TCTGAATTACTTGTCTTGGATTTGTC 57.901 34.615 0.00 0.00 0.00 3.18
1889 2103 8.352942 GTTCTGAATTACTTGTCTTGGATTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1890 2104 7.535258 CGTTCTGAATTACTTGTCTTGGATTTG 59.465 37.037 0.00 0.00 0.00 2.32
1891 2105 7.308589 CCGTTCTGAATTACTTGTCTTGGATTT 60.309 37.037 0.00 0.00 0.00 2.17
1892 2106 6.149474 CCGTTCTGAATTACTTGTCTTGGATT 59.851 38.462 0.00 0.00 0.00 3.01
1893 2107 5.643777 CCGTTCTGAATTACTTGTCTTGGAT 59.356 40.000 0.00 0.00 0.00 3.41
1894 2108 4.994852 CCGTTCTGAATTACTTGTCTTGGA 59.005 41.667 0.00 0.00 0.00 3.53
1895 2109 4.994852 TCCGTTCTGAATTACTTGTCTTGG 59.005 41.667 0.00 0.00 0.00 3.61
1896 2110 5.120830 CCTCCGTTCTGAATTACTTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
1897 2111 5.238583 CCTCCGTTCTGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
1898 2112 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
1899 2113 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
1900 2114 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
1901 2115 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
1902 2116 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
1903 2117 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
1904 2118 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
1907 2121 3.103080 ACTACTCCCTCCGTTCTGAAT 57.897 47.619 0.00 0.00 0.00 2.57
1910 2124 3.002038 ACTACTACTCCCTCCGTTCTG 57.998 52.381 0.00 0.00 0.00 3.02
1911 2125 3.735720 AACTACTACTCCCTCCGTTCT 57.264 47.619 0.00 0.00 0.00 3.01
2037 2254 6.127897 ACAAAGATTTATAACAGAGCTGGCAC 60.128 38.462 0.00 0.00 34.19 5.01
2135 2423 2.738846 CAATACGCAGAAGCAGTCACTT 59.261 45.455 0.00 0.00 42.27 3.16
2146 2434 4.257731 TGCTGGAAATAACAATACGCAGA 58.742 39.130 0.00 0.00 0.00 4.26
2199 2487 0.318441 CCTTCTGAGGCTGTTCGTCA 59.682 55.000 0.00 0.00 35.94 4.35
2209 2497 3.533606 ATCATGTTCGTCCTTCTGAGG 57.466 47.619 0.00 0.00 45.02 3.86
2242 2551 0.318441 TCGTCCTTCTCAGCCTGTTG 59.682 55.000 0.00 0.00 0.00 3.33
2250 2565 2.158813 AGCCTGTTTTTCGTCCTTCTCA 60.159 45.455 0.00 0.00 0.00 3.27
2251 2566 2.224314 CAGCCTGTTTTTCGTCCTTCTC 59.776 50.000 0.00 0.00 0.00 2.87
2252 2567 2.158813 TCAGCCTGTTTTTCGTCCTTCT 60.159 45.455 0.00 0.00 0.00 2.85
2253 2568 2.218603 TCAGCCTGTTTTTCGTCCTTC 58.781 47.619 0.00 0.00 0.00 3.46
2254 2569 2.158813 TCTCAGCCTGTTTTTCGTCCTT 60.159 45.455 0.00 0.00 0.00 3.36
2255 2570 1.416401 TCTCAGCCTGTTTTTCGTCCT 59.584 47.619 0.00 0.00 0.00 3.85
2256 2571 1.878953 TCTCAGCCTGTTTTTCGTCC 58.121 50.000 0.00 0.00 0.00 4.79
2257 2572 2.224314 CCTTCTCAGCCTGTTTTTCGTC 59.776 50.000 0.00 0.00 0.00 4.20
2258 2573 2.158813 TCCTTCTCAGCCTGTTTTTCGT 60.159 45.455 0.00 0.00 0.00 3.85
2259 2574 2.481952 CTCCTTCTCAGCCTGTTTTTCG 59.518 50.000 0.00 0.00 0.00 3.46
2260 2575 3.481453 ACTCCTTCTCAGCCTGTTTTTC 58.519 45.455 0.00 0.00 0.00 2.29
2261 2576 3.584733 ACTCCTTCTCAGCCTGTTTTT 57.415 42.857 0.00 0.00 0.00 1.94
2262 2577 3.555168 CGTACTCCTTCTCAGCCTGTTTT 60.555 47.826 0.00 0.00 0.00 2.43
2263 2578 2.028930 CGTACTCCTTCTCAGCCTGTTT 60.029 50.000 0.00 0.00 0.00 2.83
2264 2579 1.546476 CGTACTCCTTCTCAGCCTGTT 59.454 52.381 0.00 0.00 0.00 3.16
2265 2580 1.178276 CGTACTCCTTCTCAGCCTGT 58.822 55.000 0.00 0.00 0.00 4.00
2266 2581 0.179124 GCGTACTCCTTCTCAGCCTG 60.179 60.000 0.00 0.00 0.00 4.85
2267 2582 0.323908 AGCGTACTCCTTCTCAGCCT 60.324 55.000 0.00 0.00 0.00 4.58
2268 2583 0.179124 CAGCGTACTCCTTCTCAGCC 60.179 60.000 0.00 0.00 0.00 4.85
2269 2584 0.811915 TCAGCGTACTCCTTCTCAGC 59.188 55.000 0.00 0.00 0.00 4.26
2270 2585 3.791973 AATCAGCGTACTCCTTCTCAG 57.208 47.619 0.00 0.00 0.00 3.35
2752 3071 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2753 3072 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2754 3073 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2755 3074 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2756 3075 5.998363 AGAGTTGAGACACTTATTTTGGGAC 59.002 40.000 0.00 0.00 0.00 4.46
2757 3076 6.187727 AGAGTTGAGACACTTATTTTGGGA 57.812 37.500 0.00 0.00 0.00 4.37
2759 3078 9.877178 ATACTAGAGTTGAGACACTTATTTTGG 57.123 33.333 0.00 0.00 0.00 3.28
2766 3085 9.915629 CAAAGTTATACTAGAGTTGAGACACTT 57.084 33.333 0.00 0.00 0.00 3.16
2767 3086 9.080097 ACAAAGTTATACTAGAGTTGAGACACT 57.920 33.333 0.00 0.00 0.00 3.55
2794 3113 9.310716 GTGTCTCAACTTTGTAGTAACTTTAGT 57.689 33.333 0.00 0.00 33.17 2.24
2795 3114 9.530633 AGTGTCTCAACTTTGTAGTAACTTTAG 57.469 33.333 0.00 0.00 33.17 1.85
2796 3115 9.880157 AAGTGTCTCAACTTTGTAGTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
2797 3116 8.788325 AAGTGTCTCAACTTTGTAGTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2798 3117 8.258708 AGAAGTGTCTCAACTTTGTAGTAACTT 58.741 33.333 0.00 0.00 40.48 2.66
2799 3118 7.783042 AGAAGTGTCTCAACTTTGTAGTAACT 58.217 34.615 0.00 0.00 40.48 2.24
2800 3119 8.421673 AAGAAGTGTCTCAACTTTGTAGTAAC 57.578 34.615 0.00 0.00 40.48 2.50
2801 3120 9.444600 AAAAGAAGTGTCTCAACTTTGTAGTAA 57.555 29.630 0.00 0.00 40.48 2.24
2802 3121 8.879759 CAAAAGAAGTGTCTCAACTTTGTAGTA 58.120 33.333 0.00 0.00 40.48 1.82
2803 3122 7.148239 CCAAAAGAAGTGTCTCAACTTTGTAGT 60.148 37.037 0.00 0.00 40.48 2.73
2804 3123 7.189512 CCAAAAGAAGTGTCTCAACTTTGTAG 58.810 38.462 0.00 0.00 40.48 2.74
2805 3124 6.094881 CCCAAAAGAAGTGTCTCAACTTTGTA 59.905 38.462 0.00 0.00 40.48 2.41
2806 3125 5.105756 CCCAAAAGAAGTGTCTCAACTTTGT 60.106 40.000 0.00 0.00 40.48 2.83
2807 3126 5.125417 TCCCAAAAGAAGTGTCTCAACTTTG 59.875 40.000 0.00 0.00 40.48 2.77
2808 3127 5.125578 GTCCCAAAAGAAGTGTCTCAACTTT 59.874 40.000 0.00 0.00 40.48 2.66
2809 3128 4.640647 GTCCCAAAAGAAGTGTCTCAACTT 59.359 41.667 0.00 0.00 43.08 2.66
2810 3129 4.200092 GTCCCAAAAGAAGTGTCTCAACT 58.800 43.478 0.00 0.00 30.70 3.16
2811 3130 3.002348 CGTCCCAAAAGAAGTGTCTCAAC 59.998 47.826 0.00 0.00 30.70 3.18
2812 3131 3.202906 CGTCCCAAAAGAAGTGTCTCAA 58.797 45.455 0.00 0.00 30.70 3.02
2813 3132 2.484770 CCGTCCCAAAAGAAGTGTCTCA 60.485 50.000 0.00 0.00 30.70 3.27
2814 3133 2.143925 CCGTCCCAAAAGAAGTGTCTC 58.856 52.381 0.00 0.00 30.70 3.36
2815 3134 1.766496 TCCGTCCCAAAAGAAGTGTCT 59.234 47.619 0.00 0.00 34.72 3.41
2816 3135 2.143925 CTCCGTCCCAAAAGAAGTGTC 58.856 52.381 0.00 0.00 0.00 3.67
2817 3136 1.202770 CCTCCGTCCCAAAAGAAGTGT 60.203 52.381 0.00 0.00 0.00 3.55
2818 3137 1.523758 CCTCCGTCCCAAAAGAAGTG 58.476 55.000 0.00 0.00 0.00 3.16
2819 3138 0.400594 CCCTCCGTCCCAAAAGAAGT 59.599 55.000 0.00 0.00 0.00 3.01
2820 3139 0.690762 TCCCTCCGTCCCAAAAGAAG 59.309 55.000 0.00 0.00 0.00 2.85
2821 3140 0.690762 CTCCCTCCGTCCCAAAAGAA 59.309 55.000 0.00 0.00 0.00 2.52
2822 3141 0.473117 ACTCCCTCCGTCCCAAAAGA 60.473 55.000 0.00 0.00 0.00 2.52
2823 3142 1.066358 GTACTCCCTCCGTCCCAAAAG 60.066 57.143 0.00 0.00 0.00 2.27
2824 3143 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2825 3144 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2826 3145 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2827 3146 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
2828 3147 0.614134 ACAAGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
2829 3148 2.134789 TACAAGTACTCCCTCCGTCC 57.865 55.000 0.00 0.00 0.00 4.79
2830 3149 2.223758 GCATACAAGTACTCCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
2831 3150 1.755380 GCATACAAGTACTCCCTCCGT 59.245 52.381 0.00 0.00 0.00 4.69
2832 3151 1.068741 GGCATACAAGTACTCCCTCCG 59.931 57.143 0.00 0.00 0.00 4.63
2833 3152 1.416772 GGGCATACAAGTACTCCCTCC 59.583 57.143 7.65 0.35 31.20 4.30
2834 3153 2.116238 TGGGCATACAAGTACTCCCTC 58.884 52.381 14.41 0.00 33.55 4.30
2835 3154 1.838077 GTGGGCATACAAGTACTCCCT 59.162 52.381 14.41 0.00 33.55 4.20
2836 3155 1.838077 AGTGGGCATACAAGTACTCCC 59.162 52.381 7.92 7.92 33.21 4.30
2837 3156 3.705072 AGTAGTGGGCATACAAGTACTCC 59.295 47.826 0.00 0.00 0.00 3.85
2838 3157 6.320672 TCTTAGTAGTGGGCATACAAGTACTC 59.679 42.308 0.00 0.00 0.00 2.59
2839 3158 6.192773 TCTTAGTAGTGGGCATACAAGTACT 58.807 40.000 0.00 0.00 0.00 2.73
2840 3159 6.461110 TCTTAGTAGTGGGCATACAAGTAC 57.539 41.667 0.00 0.00 0.00 2.73
2841 3160 7.484993 TTTCTTAGTAGTGGGCATACAAGTA 57.515 36.000 0.00 0.00 0.00 2.24
2967 3306 9.683069 AAAGCAACTGTATCACATTTTAAAGAG 57.317 29.630 0.00 0.00 0.00 2.85
3110 3449 0.519077 GTACTTGGTGCTGCTTGCTC 59.481 55.000 0.00 0.73 43.37 4.26
3204 3543 3.088789 ACGTCAGGAACCTATCAGTCT 57.911 47.619 0.00 0.00 0.00 3.24
3212 3551 0.759346 AGCTTGAACGTCAGGAACCT 59.241 50.000 0.00 0.00 0.00 3.50
3219 3558 0.832135 AGGGAGGAGCTTGAACGTCA 60.832 55.000 0.00 0.00 0.00 4.35
3356 3695 9.752961 CAAATCAATGCTTTATTACCATCATCA 57.247 29.630 0.00 0.00 0.00 3.07
3363 3702 8.442384 CACCAAACAAATCAATGCTTTATTACC 58.558 33.333 0.00 0.00 0.00 2.85
3399 3745 2.042831 GCAGCTGGCCACAACTAGG 61.043 63.158 17.12 0.00 36.11 3.02
3458 3805 0.734942 AGCGTACCATCAAACGGTCG 60.735 55.000 0.00 0.00 45.76 4.79
3461 3808 0.446222 CCAAGCGTACCATCAAACGG 59.554 55.000 0.00 0.00 39.46 4.44
3463 3810 1.877443 ACACCAAGCGTACCATCAAAC 59.123 47.619 0.00 0.00 0.00 2.93
3464 3811 2.264005 ACACCAAGCGTACCATCAAA 57.736 45.000 0.00 0.00 0.00 2.69
3485 3837 9.120538 GCTTGGAGGTCATACAAAGATTATTAA 57.879 33.333 0.00 0.00 0.00 1.40
3517 3870 4.591929 TCATTGGATCATCTTGCTGACAA 58.408 39.130 0.00 0.00 0.00 3.18
3537 3890 4.406649 TGCAGGAGACAATATCAGACATCA 59.593 41.667 0.00 0.00 0.00 3.07
3637 4079 4.021544 GGCATCAGGACCAACATAAAACAA 60.022 41.667 0.00 0.00 0.00 2.83
3678 4120 2.092538 ACATGATTCCCTCCTGCTTCAG 60.093 50.000 0.00 0.00 0.00 3.02
3736 4183 2.484264 GGTAACATGGCACTTGTGACTC 59.516 50.000 8.17 0.00 30.41 3.36
3862 4313 1.030488 CAGTGAGGCATGCCAGGAAG 61.030 60.000 37.18 20.13 38.92 3.46
4068 4530 2.282745 GGCAGAAGCAGGGCACTT 60.283 61.111 0.00 0.00 44.61 3.16
4114 4576 9.508567 GGAAAATAATTGATTGTGAAGAGTAGC 57.491 33.333 0.00 0.00 0.00 3.58
4132 4594 6.825721 GGAGAAGATGAAGCAGAGGAAAATAA 59.174 38.462 0.00 0.00 0.00 1.40
4134 4596 5.044993 AGGAGAAGATGAAGCAGAGGAAAAT 60.045 40.000 0.00 0.00 0.00 1.82
4136 4598 3.843027 AGGAGAAGATGAAGCAGAGGAAA 59.157 43.478 0.00 0.00 0.00 3.13
4137 4599 3.448934 AGGAGAAGATGAAGCAGAGGAA 58.551 45.455 0.00 0.00 0.00 3.36
4138 4600 3.030291 GAGGAGAAGATGAAGCAGAGGA 58.970 50.000 0.00 0.00 0.00 3.71
4139 4601 3.033184 AGAGGAGAAGATGAAGCAGAGG 58.967 50.000 0.00 0.00 0.00 3.69
4140 4602 4.435425 CAAGAGGAGAAGATGAAGCAGAG 58.565 47.826 0.00 0.00 0.00 3.35
4141 4603 3.369261 GCAAGAGGAGAAGATGAAGCAGA 60.369 47.826 0.00 0.00 0.00 4.26
4142 4604 2.937799 GCAAGAGGAGAAGATGAAGCAG 59.062 50.000 0.00 0.00 0.00 4.24
4143 4605 2.570752 AGCAAGAGGAGAAGATGAAGCA 59.429 45.455 0.00 0.00 0.00 3.91
4144 4606 3.264998 AGCAAGAGGAGAAGATGAAGC 57.735 47.619 0.00 0.00 0.00 3.86
4200 4666 4.697514 TGCCATTCTATTCTAGCAGTCAC 58.302 43.478 0.00 0.00 0.00 3.67
4221 4688 3.737047 GCTGGTGATGATTCCAAAGCATG 60.737 47.826 0.00 0.00 37.69 4.06
4232 4699 3.583054 CCAACTGGCTGGTGATGAT 57.417 52.632 11.36 0.00 34.70 2.45
4254 4721 4.337555 GTGCAAGGCAATCTGAATAGATGT 59.662 41.667 0.00 0.00 42.80 3.06
4286 4774 6.374894 AGGTCTACACTCTACACTGTACATTC 59.625 42.308 0.00 0.00 0.00 2.67
4292 4780 4.471548 ACAAGGTCTACACTCTACACTGT 58.528 43.478 0.00 0.00 0.00 3.55
4293 4781 5.455056 AACAAGGTCTACACTCTACACTG 57.545 43.478 0.00 0.00 0.00 3.66
4294 4782 5.597182 TGAAACAAGGTCTACACTCTACACT 59.403 40.000 0.00 0.00 0.00 3.55
4295 4783 5.839621 TGAAACAAGGTCTACACTCTACAC 58.160 41.667 0.00 0.00 0.00 2.90
4296 4784 6.474140 TTGAAACAAGGTCTACACTCTACA 57.526 37.500 0.00 0.00 0.00 2.74
4297 4785 7.441458 ACATTTGAAACAAGGTCTACACTCTAC 59.559 37.037 0.00 0.00 0.00 2.59
4298 4786 7.506114 ACATTTGAAACAAGGTCTACACTCTA 58.494 34.615 0.00 0.00 0.00 2.43
4299 4787 6.357367 ACATTTGAAACAAGGTCTACACTCT 58.643 36.000 0.00 0.00 0.00 3.24
4300 4788 6.619801 ACATTTGAAACAAGGTCTACACTC 57.380 37.500 0.00 0.00 0.00 3.51
4349 4837 0.813821 GGTCAGGGCTTGCAAGATTC 59.186 55.000 30.39 16.89 0.00 2.52
4352 4840 1.073722 CAGGTCAGGGCTTGCAAGA 59.926 57.895 30.39 5.88 0.00 3.02
4353 4841 1.073722 TCAGGTCAGGGCTTGCAAG 59.926 57.895 22.44 22.44 0.00 4.01
4417 4906 4.996122 GCAGCATCTAGTAGCAATCTGATT 59.004 41.667 10.82 0.00 0.00 2.57
4430 4923 7.652727 TCAGTTAATACTACTGCAGCATCTAG 58.347 38.462 15.27 10.54 42.12 2.43
4457 5039 3.430556 ACAACAACAAAAACGACTTTGGC 59.569 39.130 15.11 0.00 40.03 4.52
4463 5045 5.343593 TCATCACAACAACAACAAAAACGAC 59.656 36.000 0.00 0.00 0.00 4.34
4464 5046 5.343593 GTCATCACAACAACAACAAAAACGA 59.656 36.000 0.00 0.00 0.00 3.85
4469 5051 4.381398 CCCTGTCATCACAACAACAACAAA 60.381 41.667 0.00 0.00 29.82 2.83
4475 5057 0.598065 GCCCCTGTCATCACAACAAC 59.402 55.000 0.00 0.00 29.82 3.32
4497 5080 3.680786 CCGACTCCACGTGCCTCA 61.681 66.667 10.91 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.