Multiple sequence alignment - TraesCS2A01G569900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G569900 chr2A 100.000 3976 0 0 1 3976 767570206 767566231 0.000000e+00 7343.0
1 TraesCS2A01G569900 chr2A 92.643 1332 78 12 1886 3212 767782591 767783907 0.000000e+00 1899.0
2 TraesCS2A01G569900 chr2A 83.673 294 27 9 3211 3487 767783945 767784234 1.420000e-64 257.0
3 TraesCS2A01G569900 chr2D 96.148 1272 41 4 1944 3212 642441365 642440099 0.000000e+00 2071.0
4 TraesCS2A01G569900 chr2D 93.633 1335 63 11 1886 3212 642871968 642873288 0.000000e+00 1975.0
5 TraesCS2A01G569900 chr2D 95.406 1219 46 4 1944 3152 642478063 642476845 0.000000e+00 1932.0
6 TraesCS2A01G569900 chr2D 94.730 816 30 7 607 1412 642479380 642478568 0.000000e+00 1256.0
7 TraesCS2A01G569900 chr2D 93.018 487 26 3 1407 1889 642441842 642441360 0.000000e+00 704.0
8 TraesCS2A01G569900 chr2D 92.813 487 27 3 1407 1889 642478540 642478058 0.000000e+00 699.0
9 TraesCS2A01G569900 chr2D 86.343 432 43 5 1 421 642499922 642499496 1.300000e-124 457.0
10 TraesCS2A01G569900 chr2D 87.634 372 31 6 1 360 642933370 642933002 6.150000e-113 418.0
11 TraesCS2A01G569900 chr2D 85.640 383 43 7 3 374 642443270 642442889 3.720000e-105 392.0
12 TraesCS2A01G569900 chr2D 83.250 400 51 7 1014 1400 642442278 642441882 1.760000e-93 353.0
13 TraesCS2A01G569900 chr2D 92.275 233 13 1 3260 3487 642433685 642433453 3.830000e-85 326.0
14 TraesCS2A01G569900 chr2D 95.455 154 7 0 3823 3976 642433460 642433307 3.070000e-61 246.0
15 TraesCS2A01G569900 chr2D 88.462 156 14 4 3824 3976 642873609 642873763 6.790000e-43 185.0
16 TraesCS2A01G569900 chr2D 90.741 108 9 1 3017 3123 642502553 642502660 4.140000e-30 143.0
17 TraesCS2A01G569900 chr2D 100.000 37 0 0 3212 3248 642440060 642440024 7.130000e-08 69.4
18 TraesCS2A01G569900 chr2B 93.709 1383 54 12 1860 3212 799254962 799256341 0.000000e+00 2041.0
19 TraesCS2A01G569900 chr2B 92.544 1435 79 10 1798 3212 799259761 799261187 0.000000e+00 2032.0
20 TraesCS2A01G569900 chr2B 92.640 1019 52 13 798 1795 799258454 799259470 0.000000e+00 1445.0
21 TraesCS2A01G569900 chr2B 86.483 836 89 15 1000 1814 799254125 799254957 0.000000e+00 896.0
22 TraesCS2A01G569900 chr2B 74.834 1657 295 80 1407 2982 799289188 799290803 4.330000e-179 638.0
23 TraesCS2A01G569900 chr2B 89.577 307 32 0 1 307 799253169 799253475 1.340000e-104 390.0
24 TraesCS2A01G569900 chr2B 86.782 348 32 4 3489 3822 734460569 734460916 3.750000e-100 375.0
25 TraesCS2A01G569900 chr2B 91.003 289 11 3 3211 3486 799261225 799261511 3.750000e-100 375.0
26 TraesCS2A01G569900 chr2B 91.216 148 6 1 3824 3971 799261506 799261646 1.130000e-45 195.0
27 TraesCS2A01G569900 chr2B 88.393 112 5 3 3211 3314 799256379 799256490 1.160000e-25 128.0
28 TraesCS2A01G569900 chr2B 100.000 31 0 0 3824 3854 587169353 587169383 1.540000e-04 58.4
29 TraesCS2A01G569900 chrUn 93.551 1318 66 11 1897 3209 31519091 31520394 0.000000e+00 1945.0
30 TraesCS2A01G569900 chrUn 74.724 1088 209 45 1933 2977 183018687 183017623 3.670000e-115 425.0
31 TraesCS2A01G569900 chrUn 87.320 347 30 6 3489 3822 27580595 27580940 6.230000e-103 385.0
32 TraesCS2A01G569900 chrUn 84.014 294 26 7 3211 3487 31520435 31520724 3.050000e-66 263.0
33 TraesCS2A01G569900 chrUn 87.261 157 15 5 3824 3976 31520718 31520873 1.470000e-39 174.0
34 TraesCS2A01G569900 chrUn 74.818 274 43 20 1018 1284 183019095 183018841 2.530000e-17 100.0
35 TraesCS2A01G569900 chrUn 90.141 71 3 3 3017 3083 31526863 31526793 5.470000e-14 89.8
36 TraesCS2A01G569900 chr3D 88.483 356 26 6 3489 3830 567114699 567114345 2.210000e-112 416.0
37 TraesCS2A01G569900 chr5B 88.218 348 27 6 3489 3823 532566114 532565768 1.720000e-108 403.0
38 TraesCS2A01G569900 chr5B 94.286 35 2 0 3824 3858 418466875 418466841 2.000000e-03 54.7
39 TraesCS2A01G569900 chr7D 88.757 338 22 7 3500 3823 106023477 106023142 2.230000e-107 399.0
40 TraesCS2A01G569900 chr7D 87.931 348 29 4 3489 3823 550885142 550885489 8.010000e-107 398.0
41 TraesCS2A01G569900 chr7D 87.896 347 29 4 3489 3822 106311506 106311160 2.880000e-106 396.0
42 TraesCS2A01G569900 chr7D 84.637 358 31 8 3489 3822 126710448 126710091 6.370000e-88 335.0
43 TraesCS2A01G569900 chr6D 87.966 349 26 8 3489 3821 446228875 446228527 8.010000e-107 398.0
44 TraesCS2A01G569900 chr6D 84.637 358 31 8 3489 3822 319352768 319353125 6.370000e-88 335.0
45 TraesCS2A01G569900 chr6B 87.572 346 30 4 3491 3823 16452403 16452058 4.820000e-104 388.0
46 TraesCS2A01G569900 chr6B 100.000 29 0 0 3824 3852 601132150 601132178 2.000000e-03 54.7
47 TraesCS2A01G569900 chr7B 87.537 337 38 4 3489 3822 701301644 701301309 1.730000e-103 387.0
48 TraesCS2A01G569900 chr7B 92.857 42 2 1 3420 3461 571891140 571891180 4.290000e-05 60.2
49 TraesCS2A01G569900 chr5A 85.112 356 31 8 3489 3822 554786387 554786742 1.060000e-90 344.0
50 TraesCS2A01G569900 chr5A 83.473 357 35 12 3489 3822 680508458 680508813 1.070000e-80 311.0
51 TraesCS2A01G569900 chr5A 82.044 362 33 7 3489 3818 24048368 24048007 3.030000e-71 279.0
52 TraesCS2A01G569900 chr5A 81.471 340 44 14 3498 3822 570786491 570786156 1.100000e-65 261.0
53 TraesCS2A01G569900 chr1A 82.044 362 33 7 3489 3818 30389363 30389002 3.030000e-71 279.0
54 TraesCS2A01G569900 chr7A 100.000 30 0 0 525 554 636414 636385 5.550000e-04 56.5
55 TraesCS2A01G569900 chr4D 92.308 39 3 0 3814 3852 21515972 21516010 5.550000e-04 56.5
56 TraesCS2A01G569900 chr4B 94.286 35 2 0 3824 3858 70256665 70256631 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G569900 chr2A 767566231 767570206 3975 True 7343.000000 7343 100.000000 1 3976 1 chr2A.!!$R1 3975
1 TraesCS2A01G569900 chr2A 767782591 767784234 1643 False 1078.000000 1899 88.158000 1886 3487 2 chr2A.!!$F1 1601
2 TraesCS2A01G569900 chr2D 642476845 642479380 2535 True 1295.666667 1932 94.316333 607 3152 3 chr2D.!!$R5 2545
3 TraesCS2A01G569900 chr2D 642871968 642873763 1795 False 1080.000000 1975 91.047500 1886 3976 2 chr2D.!!$F2 2090
4 TraesCS2A01G569900 chr2D 642440024 642443270 3246 True 717.880000 2071 91.611200 3 3248 5 chr2D.!!$R4 3245
5 TraesCS2A01G569900 chr2B 799253169 799261646 8477 False 937.750000 2041 90.695625 1 3971 8 chr2B.!!$F4 3970
6 TraesCS2A01G569900 chr2B 799289188 799290803 1615 False 638.000000 638 74.834000 1407 2982 1 chr2B.!!$F3 1575
7 TraesCS2A01G569900 chrUn 31519091 31520873 1782 False 794.000000 1945 88.275333 1897 3976 3 chrUn.!!$F2 2079
8 TraesCS2A01G569900 chrUn 183017623 183019095 1472 True 262.500000 425 74.771000 1018 2977 2 chrUn.!!$R2 1959

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 2508 0.038310 ACTTGGTTCCTGCCCTAAGC 59.962 55.000 0.00 0.0 44.14 3.09 F
561 2525 0.107945 AGCTGGCTCGATTGACCTTC 60.108 55.000 0.00 0.0 0.00 3.46 F
563 2527 0.173481 CTGGCTCGATTGACCTTCGA 59.827 55.000 0.00 0.0 42.87 3.71 F
589 2553 1.006102 GCACCGTAGCCTGCGATAT 60.006 57.895 3.01 0.0 0.00 1.63 F
1991 6982 1.134946 GCTCACACTTGGCTTTGTTGT 59.865 47.619 0.00 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 6982 0.183492 AGGACTCAAAGTGGCTGCAA 59.817 50.000 0.50 0.00 0.00 4.08 R
2325 7335 5.303971 AGAGTCCTGCAAGCATTATATCAC 58.696 41.667 0.00 0.00 0.00 3.06 R
2485 7508 5.774690 TGGAAGCATAAAGGTTGTTCTGAAT 59.225 36.000 0.00 0.00 38.24 2.57 R
2618 7641 2.388232 GGTGCAAGTAACTCGGCCG 61.388 63.158 22.12 22.12 0.00 6.13 R
3497 8609 0.033894 TCCCCCTCGGTAAAATTGCC 60.034 55.000 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.913722 CAAGAGCAGATCCAGGGCT 59.086 57.895 0.00 0.00 41.35 5.19
25 26 0.255318 AGCAGATCCAGGGCTTCTTG 59.745 55.000 0.00 0.00 33.21 3.02
38 39 3.823304 GGGCTTCTTGATGATTATCCACC 59.177 47.826 0.00 0.00 32.09 4.61
75 76 4.217550 TCACCGGTTTGATTTCTTTGATCC 59.782 41.667 2.97 0.00 0.00 3.36
92 93 0.178906 TCCTGTGGAGGGACATGTGA 60.179 55.000 1.15 0.00 40.25 3.58
127 128 3.055530 GGTGATATTGATCTCCCATCGCT 60.056 47.826 0.00 0.00 39.07 4.93
128 129 3.931468 GTGATATTGATCTCCCATCGCTG 59.069 47.826 0.00 0.00 32.79 5.18
129 130 3.055602 TGATATTGATCTCCCATCGCTGG 60.056 47.826 0.00 0.00 36.28 4.85
167 168 3.545366 AGATAAGCCTTCTTTCCGGTC 57.455 47.619 0.00 0.00 33.85 4.79
206 207 1.339610 GACGTGATCTCCATCCTCAGG 59.660 57.143 0.00 0.00 0.00 3.86
265 266 2.159352 GGAGAGCGTCTACCAAGTCTTC 60.159 54.545 0.00 0.00 0.00 2.87
266 267 2.488545 GAGAGCGTCTACCAAGTCTTCA 59.511 50.000 0.00 0.00 0.00 3.02
297 298 0.106894 GATCGACCCCTTGTCCATCC 59.893 60.000 0.00 0.00 41.18 3.51
301 302 2.438434 CCCCTTGTCCATCCGCAC 60.438 66.667 0.00 0.00 0.00 5.34
307 308 1.613437 CTTGTCCATCCGCACCTTTTT 59.387 47.619 0.00 0.00 0.00 1.94
309 310 0.958822 GTCCATCCGCACCTTTTTGT 59.041 50.000 0.00 0.00 0.00 2.83
312 313 0.243636 CATCCGCACCTTTTTGTCCC 59.756 55.000 0.00 0.00 0.00 4.46
314 315 2.642700 CGCACCTTTTTGTCCCCG 59.357 61.111 0.00 0.00 0.00 5.73
316 317 3.047735 CACCTTTTTGTCCCCGCC 58.952 61.111 0.00 0.00 0.00 6.13
332 344 2.108362 CCGCCGCCTAGGGTTAAG 59.892 66.667 11.72 0.00 41.48 1.85
335 347 0.808847 CGCCGCCTAGGGTTAAGTTC 60.809 60.000 11.72 0.00 41.48 3.01
360 372 1.371595 TTTGGGAATAACCTACGCGC 58.628 50.000 5.73 0.00 38.98 6.86
361 373 0.806884 TTGGGAATAACCTACGCGCG 60.807 55.000 30.96 30.96 38.98 6.86
367 379 2.412037 ATAACCTACGCGCGCCTACC 62.412 60.000 32.58 0.00 0.00 3.18
369 381 4.925576 CCTACGCGCGCCTACCAG 62.926 72.222 32.58 16.42 0.00 4.00
370 382 4.925576 CTACGCGCGCCTACCAGG 62.926 72.222 32.58 12.27 38.80 4.45
376 399 1.669760 CGCGCCTACCAGGTTTCAA 60.670 57.895 0.00 0.00 37.80 2.69
392 415 3.940209 TTCAACCAAGATGATTGCACC 57.060 42.857 0.00 0.00 0.00 5.01
393 416 3.159213 TCAACCAAGATGATTGCACCT 57.841 42.857 0.00 0.00 0.00 4.00
394 417 3.084039 TCAACCAAGATGATTGCACCTC 58.916 45.455 0.00 0.00 0.00 3.85
397 420 0.379669 CAAGATGATTGCACCTCGCC 59.620 55.000 0.00 0.00 41.33 5.54
398 421 0.254178 AAGATGATTGCACCTCGCCT 59.746 50.000 0.00 0.00 41.33 5.52
399 422 0.179062 AGATGATTGCACCTCGCCTC 60.179 55.000 0.00 0.00 41.33 4.70
402 425 1.880340 GATTGCACCTCGCCTCTCG 60.880 63.158 0.00 0.00 41.33 4.04
403 426 3.376935 ATTGCACCTCGCCTCTCGG 62.377 63.158 0.00 0.00 41.33 4.63
422 451 2.743928 GGTGCAAGCAGAGGACGG 60.744 66.667 0.00 0.00 0.00 4.79
423 452 3.426568 GTGCAAGCAGAGGACGGC 61.427 66.667 0.00 0.00 37.48 5.68
438 467 3.138798 GGCGACCGAGCAGGACTA 61.139 66.667 5.19 0.00 45.00 2.59
440 469 1.516603 GCGACCGAGCAGGACTAAC 60.517 63.158 5.19 0.00 45.00 2.34
441 470 1.935327 GCGACCGAGCAGGACTAACT 61.935 60.000 5.19 0.00 45.00 2.24
442 471 0.099082 CGACCGAGCAGGACTAACTC 59.901 60.000 5.19 0.00 45.00 3.01
443 472 0.456628 GACCGAGCAGGACTAACTCC 59.543 60.000 5.19 0.00 45.00 3.85
444 473 0.971447 ACCGAGCAGGACTAACTCCC 60.971 60.000 5.19 0.00 45.00 4.30
445 474 0.970937 CCGAGCAGGACTAACTCCCA 60.971 60.000 0.00 0.00 45.00 4.37
447 476 1.562783 GAGCAGGACTAACTCCCAGT 58.437 55.000 0.00 0.00 40.53 4.00
449 478 2.427812 GAGCAGGACTAACTCCCAGTAC 59.572 54.545 0.00 0.00 40.53 2.73
453 2417 4.142204 GCAGGACTAACTCCCAGTACTTAC 60.142 50.000 0.00 0.00 40.53 2.34
454 2418 5.262804 CAGGACTAACTCCCAGTACTTACT 58.737 45.833 0.00 0.00 40.53 2.24
466 2430 4.308899 AGTACTTACTGGCGATGATGAC 57.691 45.455 0.00 0.00 34.72 3.06
469 2433 3.461061 ACTTACTGGCGATGATGACATG 58.539 45.455 0.00 0.00 36.82 3.21
470 2434 1.869774 TACTGGCGATGATGACATGC 58.130 50.000 0.00 0.00 36.82 4.06
471 2435 0.816825 ACTGGCGATGATGACATGCC 60.817 55.000 7.42 7.42 43.76 4.40
473 2437 1.096967 TGGCGATGATGACATGCCAC 61.097 55.000 12.02 0.00 45.71 5.01
474 2438 1.277739 GCGATGATGACATGCCACG 59.722 57.895 0.00 0.00 36.82 4.94
475 2439 1.153597 GCGATGATGACATGCCACGA 61.154 55.000 0.00 0.00 36.82 4.35
476 2440 1.505425 CGATGATGACATGCCACGAT 58.495 50.000 0.00 0.00 36.82 3.73
479 2443 2.399916 TGATGACATGCCACGATGAA 57.600 45.000 0.00 0.00 0.00 2.57
480 2444 2.009051 TGATGACATGCCACGATGAAC 58.991 47.619 0.00 0.00 0.00 3.18
481 2445 4.835304 ATGATGACATGCCACGATGAACG 61.835 47.826 0.00 0.00 40.54 3.95
502 2466 3.986006 GGCACCACGAGTCCACGA 61.986 66.667 0.00 0.00 37.03 4.35
503 2467 2.733593 GCACCACGAGTCCACGAC 60.734 66.667 0.00 0.00 37.03 4.34
504 2468 2.428569 CACCACGAGTCCACGACG 60.429 66.667 0.00 0.00 37.67 5.12
505 2469 2.592574 ACCACGAGTCCACGACGA 60.593 61.111 0.00 0.00 37.67 4.20
506 2470 2.188829 ACCACGAGTCCACGACGAA 61.189 57.895 0.00 0.00 37.67 3.85
507 2471 1.442184 CCACGAGTCCACGACGAAG 60.442 63.158 0.00 0.00 37.67 3.79
509 2473 2.254350 CGAGTCCACGACGAAGCA 59.746 61.111 0.00 0.00 37.67 3.91
511 2475 1.579932 GAGTCCACGACGAAGCAGA 59.420 57.895 0.00 0.00 37.67 4.26
512 2476 0.455295 GAGTCCACGACGAAGCAGAG 60.455 60.000 0.00 0.00 37.67 3.35
513 2477 2.089349 GTCCACGACGAAGCAGAGC 61.089 63.158 0.00 0.00 0.00 4.09
514 2478 2.259818 CCACGACGAAGCAGAGCT 59.740 61.111 0.00 0.00 42.56 4.09
515 2479 1.803519 CCACGACGAAGCAGAGCTC 60.804 63.158 5.27 5.27 38.25 4.09
516 2480 2.148982 CACGACGAAGCAGAGCTCG 61.149 63.158 8.37 4.60 38.25 5.03
517 2481 3.243892 CGACGAAGCAGAGCTCGC 61.244 66.667 18.76 18.76 38.25 5.03
518 2482 2.180518 GACGAAGCAGAGCTCGCT 59.819 61.111 21.97 21.97 38.25 4.93
519 2483 1.871789 GACGAAGCAGAGCTCGCTC 60.872 63.158 25.80 19.15 38.25 5.03
529 2493 2.031037 GAGCTCGCTCTATCGACTTG 57.969 55.000 11.49 0.00 39.80 3.16
530 2494 0.665835 AGCTCGCTCTATCGACTTGG 59.334 55.000 0.00 0.00 34.46 3.61
532 2496 1.202313 GCTCGCTCTATCGACTTGGTT 60.202 52.381 0.00 0.00 34.46 3.67
534 2498 1.404391 TCGCTCTATCGACTTGGTTCC 59.596 52.381 0.00 0.00 33.02 3.62
537 2501 2.815478 CTCTATCGACTTGGTTCCTGC 58.185 52.381 0.00 0.00 0.00 4.85
539 2503 0.539986 TATCGACTTGGTTCCTGCCC 59.460 55.000 0.00 0.00 0.00 5.36
540 2504 1.201429 ATCGACTTGGTTCCTGCCCT 61.201 55.000 0.00 0.00 0.00 5.19
541 2505 0.543410 TCGACTTGGTTCCTGCCCTA 60.543 55.000 0.00 0.00 0.00 3.53
543 2507 1.676014 CGACTTGGTTCCTGCCCTAAG 60.676 57.143 0.00 0.00 0.00 2.18
544 2508 0.038310 ACTTGGTTCCTGCCCTAAGC 59.962 55.000 0.00 0.00 44.14 3.09
553 2517 2.825264 GCCCTAAGCTGGCTCGAT 59.175 61.111 6.31 0.00 45.70 3.59
554 2518 1.147153 GCCCTAAGCTGGCTCGATT 59.853 57.895 6.31 0.00 45.70 3.34
555 2519 1.162800 GCCCTAAGCTGGCTCGATTG 61.163 60.000 6.31 0.00 45.70 2.67
556 2520 0.465705 CCCTAAGCTGGCTCGATTGA 59.534 55.000 0.00 0.00 0.00 2.57
557 2521 1.576356 CCTAAGCTGGCTCGATTGAC 58.424 55.000 0.00 0.00 0.00 3.18
558 2522 1.576356 CTAAGCTGGCTCGATTGACC 58.424 55.000 0.00 0.00 0.00 4.02
559 2523 1.137872 CTAAGCTGGCTCGATTGACCT 59.862 52.381 0.00 0.00 0.00 3.85
560 2524 0.326264 AAGCTGGCTCGATTGACCTT 59.674 50.000 0.00 0.00 0.00 3.50
561 2525 0.107945 AGCTGGCTCGATTGACCTTC 60.108 55.000 0.00 0.00 0.00 3.46
562 2526 1.424493 GCTGGCTCGATTGACCTTCG 61.424 60.000 0.00 0.00 37.94 3.79
563 2527 0.173481 CTGGCTCGATTGACCTTCGA 59.827 55.000 0.00 0.00 42.87 3.71
566 2530 2.280628 GGCTCGATTGACCTTCGATTT 58.719 47.619 0.00 0.00 43.93 2.17
567 2531 2.678336 GGCTCGATTGACCTTCGATTTT 59.322 45.455 0.00 0.00 43.93 1.82
568 2532 3.127030 GGCTCGATTGACCTTCGATTTTT 59.873 43.478 0.00 0.00 43.93 1.94
584 2548 1.161843 TTTTTAGCACCGTAGCCTGC 58.838 50.000 0.00 0.00 34.23 4.85
585 2549 1.017177 TTTTAGCACCGTAGCCTGCG 61.017 55.000 0.00 0.00 38.51 5.18
586 2550 1.879737 TTTAGCACCGTAGCCTGCGA 61.880 55.000 3.01 0.00 38.51 5.10
587 2551 1.672854 TTAGCACCGTAGCCTGCGAT 61.673 55.000 3.01 0.00 38.51 4.58
589 2553 1.006102 GCACCGTAGCCTGCGATAT 60.006 57.895 3.01 0.00 0.00 1.63
602 2566 2.670401 GCGATATGCAGGTACAAAGC 57.330 50.000 0.00 0.00 45.45 3.51
603 2567 2.213499 GCGATATGCAGGTACAAAGCT 58.787 47.619 0.00 0.00 45.45 3.74
604 2568 2.614057 GCGATATGCAGGTACAAAGCTT 59.386 45.455 0.00 0.00 45.45 3.74
617 2581 5.239525 GGTACAAAGCTTGCCTCCAATATAG 59.760 44.000 0.00 0.00 0.00 1.31
618 2582 3.633986 ACAAAGCTTGCCTCCAATATAGC 59.366 43.478 0.00 0.00 0.00 2.97
679 2643 1.148273 GCCGGTGGATTGATAGCCA 59.852 57.895 1.90 0.00 37.54 4.75
728 4066 8.564648 TTTTTATATATCACGTCACGGTACAG 57.435 34.615 0.35 0.00 0.00 2.74
1013 5558 3.245948 GGTAGGGAGATGGAGATGGAGAT 60.246 52.174 0.00 0.00 0.00 2.75
1167 5760 2.267961 GAGAACCCATCGCCCGTT 59.732 61.111 0.00 0.00 0.00 4.44
1221 5814 3.685756 ACGACGACAAAGGACTTGAAAAA 59.314 39.130 0.00 0.00 38.50 1.94
1235 5828 8.290325 AGGACTTGAAAAATACTTCGATTTCAC 58.710 33.333 8.68 0.17 40.40 3.18
1309 5902 2.124570 CCAACTCCCATGCCTCCG 60.125 66.667 0.00 0.00 0.00 4.63
1368 5961 7.985184 ACAGCGTCCAGATTAGTTAAAATATCA 59.015 33.333 0.00 0.00 0.00 2.15
1400 5993 3.710722 CAAGCCAGCCGAGGAGGT 61.711 66.667 0.00 0.00 43.70 3.85
1437 6096 5.778750 TGATGATGAGAAGGAGATGATGCTA 59.221 40.000 0.00 0.00 0.00 3.49
1462 6121 1.281899 CGAATTCTTGCGTCTCTCCC 58.718 55.000 3.52 0.00 0.00 4.30
1463 6122 1.404181 CGAATTCTTGCGTCTCTCCCA 60.404 52.381 3.52 0.00 0.00 4.37
1509 6168 5.447818 CCTTTACAAGAATGAGTTGGCGATC 60.448 44.000 0.00 0.00 0.00 3.69
1575 6234 2.441164 GAGAGGGAGGCAGCGAGA 60.441 66.667 0.00 0.00 0.00 4.04
1665 6336 2.293122 TGACCAGCAGGAAACAAAATCG 59.707 45.455 0.35 0.00 38.69 3.34
1698 6369 4.585162 CGTCTCAAAGAGGGTATGGATACT 59.415 45.833 0.00 0.00 33.81 2.12
1817 6777 2.882761 ACATACATGCATGCTGCTTAGG 59.117 45.455 26.53 14.42 45.31 2.69
1858 6818 7.054751 TGTCTAGCTAGTCTGTTTGCTCTATA 58.945 38.462 20.10 0.00 37.02 1.31
1859 6819 7.721842 TGTCTAGCTAGTCTGTTTGCTCTATAT 59.278 37.037 20.10 0.00 37.02 0.86
1860 6820 9.221933 GTCTAGCTAGTCTGTTTGCTCTATATA 57.778 37.037 20.10 0.00 37.02 0.86
1861 6821 9.967451 TCTAGCTAGTCTGTTTGCTCTATATAT 57.033 33.333 20.10 0.00 37.02 0.86
1912 6872 2.447047 ACACCAACTTCCTCCCTCATTT 59.553 45.455 0.00 0.00 0.00 2.32
1991 6982 1.134946 GCTCACACTTGGCTTTGTTGT 59.865 47.619 0.00 0.00 0.00 3.32
2245 7236 7.860373 TCACTGAAAATGTATGCACTGTTTTAC 59.140 33.333 0.00 0.00 0.00 2.01
2276 7267 9.794685 AGTTTTCTCTTCAGTTTCATCTTTTTC 57.205 29.630 0.00 0.00 0.00 2.29
2618 7641 1.737735 GTGGCCTTTTGAATGCGGC 60.738 57.895 3.32 0.00 41.75 6.53
2690 7713 5.101628 TGTGATGAAGTTGTTTTGCTTGAC 58.898 37.500 0.00 0.00 0.00 3.18
2884 7922 4.817517 AGTATGGGTAGTTGTTTCGTCTG 58.182 43.478 0.00 0.00 0.00 3.51
2952 7990 7.071447 TCCGGGACAAGATGGATTTACTAATTA 59.929 37.037 0.00 0.00 0.00 1.40
3000 8041 3.711190 TGCTGTCTTGCCCATCTAATCTA 59.289 43.478 0.00 0.00 0.00 1.98
3252 8355 1.220206 CAGGCCTGTGAGCTACCAG 59.780 63.158 25.53 5.34 0.00 4.00
3334 8439 1.867363 AGTATCCAGTGTCAGGTCCC 58.133 55.000 0.00 0.00 0.00 4.46
3354 8459 1.072965 CCCAGGGATGTTAGATGGCTC 59.927 57.143 0.00 0.00 0.00 4.70
3486 8598 8.408743 AGATCAATAACGTAGTGAGCTAAAAC 57.591 34.615 10.90 0.00 46.04 2.43
3487 8599 6.956299 TCAATAACGTAGTGAGCTAAAACC 57.044 37.500 0.00 0.00 45.00 3.27
3488 8600 6.457355 TCAATAACGTAGTGAGCTAAAACCA 58.543 36.000 0.00 0.00 45.00 3.67
3489 8601 6.366877 TCAATAACGTAGTGAGCTAAAACCAC 59.633 38.462 0.00 0.00 45.00 4.16
3490 8602 3.036075 ACGTAGTGAGCTAAAACCACC 57.964 47.619 0.00 0.00 42.51 4.61
3491 8603 1.990563 CGTAGTGAGCTAAAACCACCG 59.009 52.381 0.00 0.00 0.00 4.94
3492 8604 2.352030 CGTAGTGAGCTAAAACCACCGA 60.352 50.000 0.00 0.00 0.00 4.69
3493 8605 2.922740 AGTGAGCTAAAACCACCGAA 57.077 45.000 0.00 0.00 0.00 4.30
3494 8606 3.418684 AGTGAGCTAAAACCACCGAAT 57.581 42.857 0.00 0.00 0.00 3.34
3495 8607 3.751518 AGTGAGCTAAAACCACCGAATT 58.248 40.909 0.00 0.00 0.00 2.17
3496 8608 3.502211 AGTGAGCTAAAACCACCGAATTG 59.498 43.478 0.00 0.00 0.00 2.32
3497 8609 2.817258 TGAGCTAAAACCACCGAATTGG 59.183 45.455 0.00 0.00 46.41 3.16
3498 8610 2.163613 GAGCTAAAACCACCGAATTGGG 59.836 50.000 4.73 4.73 44.64 4.12
3499 8611 1.403647 GCTAAAACCACCGAATTGGGC 60.404 52.381 6.38 0.00 44.64 5.36
3500 8612 1.889829 CTAAAACCACCGAATTGGGCA 59.110 47.619 6.38 0.00 44.64 5.36
3501 8613 1.123928 AAAACCACCGAATTGGGCAA 58.876 45.000 6.38 0.00 44.64 4.52
3502 8614 1.347062 AAACCACCGAATTGGGCAAT 58.653 45.000 6.38 0.00 44.64 3.56
3503 8615 1.347062 AACCACCGAATTGGGCAATT 58.653 45.000 6.38 0.00 44.64 2.32
3504 8616 1.347062 ACCACCGAATTGGGCAATTT 58.653 45.000 6.38 0.00 44.64 1.82
3505 8617 1.696884 ACCACCGAATTGGGCAATTTT 59.303 42.857 6.38 0.00 44.64 1.82
3506 8618 2.900546 ACCACCGAATTGGGCAATTTTA 59.099 40.909 6.38 0.00 44.64 1.52
3507 8619 3.258228 CCACCGAATTGGGCAATTTTAC 58.742 45.455 6.38 0.00 44.64 2.01
3508 8620 3.258228 CACCGAATTGGGCAATTTTACC 58.742 45.455 6.38 0.00 44.64 2.85
3509 8621 2.094442 ACCGAATTGGGCAATTTTACCG 60.094 45.455 6.38 0.00 44.64 4.02
3510 8622 2.164624 CCGAATTGGGCAATTTTACCGA 59.835 45.455 0.00 0.00 40.77 4.69
3511 8623 3.434637 CGAATTGGGCAATTTTACCGAG 58.565 45.455 0.00 0.00 40.77 4.63
3512 8624 3.733684 CGAATTGGGCAATTTTACCGAGG 60.734 47.826 0.00 0.00 40.77 4.63
3513 8625 1.551452 TTGGGCAATTTTACCGAGGG 58.449 50.000 0.00 0.00 0.00 4.30
3514 8626 0.323908 TGGGCAATTTTACCGAGGGG 60.324 55.000 0.00 0.00 40.11 4.79
3515 8627 1.040893 GGGCAATTTTACCGAGGGGG 61.041 60.000 0.00 0.00 43.62 5.40
3516 8628 0.033894 GGCAATTTTACCGAGGGGGA 60.034 55.000 0.00 0.00 39.97 4.81
3517 8629 1.100510 GCAATTTTACCGAGGGGGAC 58.899 55.000 0.00 0.00 39.97 4.46
3518 8630 1.340697 GCAATTTTACCGAGGGGGACT 60.341 52.381 0.00 0.00 39.97 3.85
3519 8631 2.365582 CAATTTTACCGAGGGGGACTG 58.634 52.381 0.00 0.00 39.97 3.51
3520 8632 0.916809 ATTTTACCGAGGGGGACTGG 59.083 55.000 0.00 0.00 39.97 4.00
3521 8633 0.474273 TTTTACCGAGGGGGACTGGT 60.474 55.000 0.00 0.00 39.97 4.00
3522 8634 0.413037 TTTACCGAGGGGGACTGGTA 59.587 55.000 0.00 0.00 39.97 3.25
3523 8635 0.413037 TTACCGAGGGGGACTGGTAA 59.587 55.000 0.00 0.00 38.93 2.85
3524 8636 0.413037 TACCGAGGGGGACTGGTAAA 59.587 55.000 0.00 0.00 39.97 2.01
3525 8637 1.196766 ACCGAGGGGGACTGGTAAAC 61.197 60.000 0.00 0.00 39.97 2.01
3526 8638 1.217244 CGAGGGGGACTGGTAAACG 59.783 63.158 0.00 0.00 0.00 3.60
3527 8639 1.538687 CGAGGGGGACTGGTAAACGT 61.539 60.000 0.00 0.00 0.00 3.99
3528 8640 0.036671 GAGGGGGACTGGTAAACGTG 60.037 60.000 0.00 0.00 0.00 4.49
3529 8641 1.002990 GGGGGACTGGTAAACGTGG 60.003 63.158 0.00 0.00 0.00 4.94
3530 8642 1.756665 GGGGACTGGTAAACGTGGT 59.243 57.895 0.00 0.00 0.00 4.16
3531 8643 0.109153 GGGGACTGGTAAACGTGGTT 59.891 55.000 0.00 0.00 0.00 3.67
3532 8644 1.347378 GGGGACTGGTAAACGTGGTTA 59.653 52.381 0.00 0.00 0.00 2.85
3533 8645 2.416747 GGGACTGGTAAACGTGGTTAC 58.583 52.381 0.00 0.00 33.91 2.50
3558 8670 4.943508 GGTTACCGAGAATATTTCGACG 57.056 45.455 16.51 8.64 40.36 5.12
3559 8671 4.601019 GGTTACCGAGAATATTTCGACGA 58.399 43.478 16.51 0.00 40.36 4.20
3560 8672 5.218139 GGTTACCGAGAATATTTCGACGAT 58.782 41.667 16.51 0.00 40.36 3.73
3561 8673 5.689068 GGTTACCGAGAATATTTCGACGATT 59.311 40.000 16.51 0.00 40.36 3.34
3562 8674 6.199719 GGTTACCGAGAATATTTCGACGATTT 59.800 38.462 16.51 0.00 40.36 2.17
3563 8675 7.254218 GGTTACCGAGAATATTTCGACGATTTT 60.254 37.037 16.51 0.00 40.36 1.82
3564 8676 8.745837 GTTACCGAGAATATTTCGACGATTTTA 58.254 33.333 16.51 0.00 40.36 1.52
3565 8677 7.941795 ACCGAGAATATTTCGACGATTTTAT 57.058 32.000 16.51 0.00 40.36 1.40
3567 8679 8.909671 ACCGAGAATATTTCGACGATTTTATAC 58.090 33.333 16.51 0.00 40.36 1.47
3568 8680 9.125906 CCGAGAATATTTCGACGATTTTATACT 57.874 33.333 16.51 0.00 40.36 2.12
3602 8714 8.822652 AAATTCAAATGAGTGAATGAAGGAAC 57.177 30.769 1.41 0.00 45.42 3.62
3603 8715 6.957920 TTCAAATGAGTGAATGAAGGAACA 57.042 33.333 0.00 0.00 32.56 3.18
3604 8716 7.528996 TTCAAATGAGTGAATGAAGGAACAT 57.471 32.000 0.00 0.00 32.56 2.71
3605 8717 7.528996 TCAAATGAGTGAATGAAGGAACATT 57.471 32.000 0.00 0.00 42.19 2.71
3613 8725 4.974591 GAATGAAGGAACATTCGAACCAG 58.025 43.478 0.00 0.00 43.85 4.00
3614 8726 3.762407 TGAAGGAACATTCGAACCAGA 57.238 42.857 0.00 0.00 31.52 3.86
3615 8727 3.664107 TGAAGGAACATTCGAACCAGAG 58.336 45.455 0.00 0.00 31.52 3.35
3616 8728 2.770164 AGGAACATTCGAACCAGAGG 57.230 50.000 0.00 0.00 0.00 3.69
3617 8729 1.087501 GGAACATTCGAACCAGAGGC 58.912 55.000 0.00 0.00 0.00 4.70
3618 8730 1.087501 GAACATTCGAACCAGAGGCC 58.912 55.000 0.00 0.00 0.00 5.19
3619 8731 0.693049 AACATTCGAACCAGAGGCCT 59.307 50.000 3.86 3.86 0.00 5.19
3620 8732 0.250513 ACATTCGAACCAGAGGCCTC 59.749 55.000 26.22 26.22 0.00 4.70
3621 8733 0.539051 CATTCGAACCAGAGGCCTCT 59.461 55.000 30.40 30.40 41.37 3.69
3622 8734 0.827368 ATTCGAACCAGAGGCCTCTC 59.173 55.000 33.06 20.07 37.98 3.20
3623 8735 0.541998 TTCGAACCAGAGGCCTCTCA 60.542 55.000 33.06 9.45 42.34 3.27
3624 8736 0.541998 TCGAACCAGAGGCCTCTCAA 60.542 55.000 33.06 11.33 42.34 3.02
3625 8737 0.321671 CGAACCAGAGGCCTCTCAAA 59.678 55.000 33.06 0.00 42.34 2.69
3626 8738 1.270839 CGAACCAGAGGCCTCTCAAAA 60.271 52.381 33.06 0.00 42.34 2.44
3627 8739 2.155279 GAACCAGAGGCCTCTCAAAAC 58.845 52.381 33.06 18.07 42.34 2.43
3628 8740 1.140312 ACCAGAGGCCTCTCAAAACA 58.860 50.000 33.06 0.00 42.34 2.83
3629 8741 1.707427 ACCAGAGGCCTCTCAAAACAT 59.293 47.619 33.06 6.69 42.34 2.71
3630 8742 2.089980 CCAGAGGCCTCTCAAAACATG 58.910 52.381 33.06 18.84 42.34 3.21
3631 8743 2.290514 CCAGAGGCCTCTCAAAACATGA 60.291 50.000 33.06 0.00 42.34 3.07
3632 8744 3.415212 CAGAGGCCTCTCAAAACATGAA 58.585 45.455 33.06 0.00 42.34 2.57
3633 8745 3.439476 CAGAGGCCTCTCAAAACATGAAG 59.561 47.826 33.06 12.93 42.34 3.02
3634 8746 3.073650 AGAGGCCTCTCAAAACATGAAGT 59.926 43.478 30.40 2.08 42.34 3.01
3635 8747 4.287067 AGAGGCCTCTCAAAACATGAAGTA 59.713 41.667 30.40 0.00 42.34 2.24
3636 8748 4.583871 AGGCCTCTCAAAACATGAAGTAG 58.416 43.478 0.00 0.00 37.67 2.57
3637 8749 3.691609 GGCCTCTCAAAACATGAAGTAGG 59.308 47.826 0.00 0.00 37.67 3.18
3638 8750 4.327680 GCCTCTCAAAACATGAAGTAGGT 58.672 43.478 0.00 0.00 37.67 3.08
3639 8751 4.762251 GCCTCTCAAAACATGAAGTAGGTT 59.238 41.667 0.00 0.00 37.67 3.50
3640 8752 5.335191 GCCTCTCAAAACATGAAGTAGGTTG 60.335 44.000 0.00 0.00 37.67 3.77
3641 8753 5.335191 CCTCTCAAAACATGAAGTAGGTTGC 60.335 44.000 0.00 0.00 37.67 4.17
3642 8754 5.376625 TCTCAAAACATGAAGTAGGTTGCT 58.623 37.500 0.00 0.00 37.67 3.91
3643 8755 6.530120 TCTCAAAACATGAAGTAGGTTGCTA 58.470 36.000 0.00 0.00 37.67 3.49
3644 8756 6.426937 TCTCAAAACATGAAGTAGGTTGCTAC 59.573 38.462 0.00 0.00 37.67 3.58
3645 8757 5.472137 TCAAAACATGAAGTAGGTTGCTACC 59.528 40.000 9.54 9.54 38.87 3.18
3646 8758 6.913739 TCAAAACATGAAGTAGGTTGCTACCA 60.914 38.462 19.71 2.89 40.17 3.25
3647 8759 8.337996 TCAAAACATGAAGTAGGTTGCTACCAA 61.338 37.037 19.71 0.00 40.17 3.67
3658 8770 3.408288 TTGCTACCAACACGTCAAAAC 57.592 42.857 0.00 0.00 0.00 2.43
3659 8771 2.357075 TGCTACCAACACGTCAAAACA 58.643 42.857 0.00 0.00 0.00 2.83
3660 8772 2.747989 TGCTACCAACACGTCAAAACAA 59.252 40.909 0.00 0.00 0.00 2.83
3661 8773 3.190744 TGCTACCAACACGTCAAAACAAA 59.809 39.130 0.00 0.00 0.00 2.83
3662 8774 3.544682 GCTACCAACACGTCAAAACAAAC 59.455 43.478 0.00 0.00 0.00 2.93
3663 8775 3.926821 ACCAACACGTCAAAACAAACT 57.073 38.095 0.00 0.00 0.00 2.66
3664 8776 3.828786 ACCAACACGTCAAAACAAACTC 58.171 40.909 0.00 0.00 0.00 3.01
3665 8777 3.504520 ACCAACACGTCAAAACAAACTCT 59.495 39.130 0.00 0.00 0.00 3.24
3666 8778 4.095610 CCAACACGTCAAAACAAACTCTC 58.904 43.478 0.00 0.00 0.00 3.20
3667 8779 4.378978 CCAACACGTCAAAACAAACTCTCA 60.379 41.667 0.00 0.00 0.00 3.27
3668 8780 5.331902 CAACACGTCAAAACAAACTCTCAT 58.668 37.500 0.00 0.00 0.00 2.90
3669 8781 4.908736 ACACGTCAAAACAAACTCTCATG 58.091 39.130 0.00 0.00 0.00 3.07
3670 8782 4.634004 ACACGTCAAAACAAACTCTCATGA 59.366 37.500 0.00 0.00 0.00 3.07
3671 8783 5.296780 ACACGTCAAAACAAACTCTCATGAT 59.703 36.000 0.00 0.00 0.00 2.45
3672 8784 6.481976 ACACGTCAAAACAAACTCTCATGATA 59.518 34.615 0.00 0.00 0.00 2.15
3673 8785 7.173218 ACACGTCAAAACAAACTCTCATGATAT 59.827 33.333 0.00 0.00 0.00 1.63
3674 8786 8.017373 CACGTCAAAACAAACTCTCATGATATT 58.983 33.333 0.00 0.00 0.00 1.28
3675 8787 9.214957 ACGTCAAAACAAACTCTCATGATATTA 57.785 29.630 0.00 0.00 0.00 0.98
3708 8820 9.956720 TCCTACGTACTTTACTATAAATCAAGC 57.043 33.333 0.00 0.00 0.00 4.01
3709 8821 8.899776 CCTACGTACTTTACTATAAATCAAGCG 58.100 37.037 0.00 0.00 0.00 4.68
3710 8822 9.443283 CTACGTACTTTACTATAAATCAAGCGT 57.557 33.333 0.00 0.00 0.00 5.07
3711 8823 8.693542 ACGTACTTTACTATAAATCAAGCGTT 57.306 30.769 0.00 0.00 0.00 4.84
3712 8824 9.143631 ACGTACTTTACTATAAATCAAGCGTTT 57.856 29.630 0.00 0.00 0.00 3.60
3754 8866 5.669164 TTTTGCTTGGTATGGGGATTTAC 57.331 39.130 0.00 0.00 0.00 2.01
3755 8867 3.306472 TGCTTGGTATGGGGATTTACC 57.694 47.619 0.00 0.00 38.08 2.85
3756 8868 2.227194 GCTTGGTATGGGGATTTACCG 58.773 52.381 0.00 0.00 40.11 4.02
3757 8869 2.158726 GCTTGGTATGGGGATTTACCGA 60.159 50.000 0.00 0.00 40.11 4.69
3758 8870 3.740115 CTTGGTATGGGGATTTACCGAG 58.260 50.000 2.75 2.75 40.11 4.63
3759 8871 2.051692 TGGTATGGGGATTTACCGAGG 58.948 52.381 0.00 0.00 40.11 4.63
3760 8872 1.350019 GGTATGGGGATTTACCGAGGG 59.650 57.143 0.00 0.00 40.11 4.30
3761 8873 1.350019 GTATGGGGATTTACCGAGGGG 59.650 57.143 0.00 0.00 40.11 4.79
3762 8874 1.716028 ATGGGGATTTACCGAGGGGC 61.716 60.000 0.00 0.00 40.11 5.80
3763 8875 2.110420 GGGATTTACCGAGGGGCG 59.890 66.667 0.00 0.00 40.11 6.13
3764 8876 2.590859 GGATTTACCGAGGGGCGC 60.591 66.667 0.00 0.00 39.11 6.53
3765 8877 2.965462 GATTTACCGAGGGGCGCG 60.965 66.667 0.00 0.00 39.11 6.86
3772 8884 2.030562 CGAGGGGCGCGGAAATAT 59.969 61.111 8.83 0.00 0.00 1.28
3773 8885 2.317609 CGAGGGGCGCGGAAATATG 61.318 63.158 8.83 0.00 0.00 1.78
3774 8886 2.594592 AGGGGCGCGGAAATATGC 60.595 61.111 8.83 0.00 0.00 3.14
3782 8894 1.301423 GCGGAAATATGCGGTAACCA 58.699 50.000 0.00 0.00 41.16 3.67
3783 8895 1.877443 GCGGAAATATGCGGTAACCAT 59.123 47.619 0.00 0.00 41.16 3.55
3784 8896 2.292292 GCGGAAATATGCGGTAACCATT 59.708 45.455 0.00 0.00 41.16 3.16
3785 8897 3.851838 GCGGAAATATGCGGTAACCATTG 60.852 47.826 0.00 0.00 41.16 2.82
3786 8898 3.562141 CGGAAATATGCGGTAACCATTGA 59.438 43.478 0.00 0.00 36.66 2.57
3787 8899 4.035792 CGGAAATATGCGGTAACCATTGAA 59.964 41.667 0.00 0.00 36.66 2.69
3788 8900 5.449314 CGGAAATATGCGGTAACCATTGAAA 60.449 40.000 0.00 0.00 36.66 2.69
3789 8901 6.334202 GGAAATATGCGGTAACCATTGAAAA 58.666 36.000 0.00 0.00 0.00 2.29
3790 8902 6.983890 GGAAATATGCGGTAACCATTGAAAAT 59.016 34.615 0.00 0.00 0.00 1.82
3791 8903 7.169140 GGAAATATGCGGTAACCATTGAAAATC 59.831 37.037 0.00 0.00 0.00 2.17
3792 8904 6.959639 ATATGCGGTAACCATTGAAAATCT 57.040 33.333 0.00 0.00 0.00 2.40
3793 8905 5.659440 ATGCGGTAACCATTGAAAATCTT 57.341 34.783 0.00 0.00 0.00 2.40
3794 8906 4.804108 TGCGGTAACCATTGAAAATCTTG 58.196 39.130 0.00 0.00 0.00 3.02
3795 8907 4.520874 TGCGGTAACCATTGAAAATCTTGA 59.479 37.500 0.00 0.00 0.00 3.02
3796 8908 5.010112 TGCGGTAACCATTGAAAATCTTGAA 59.990 36.000 0.00 0.00 0.00 2.69
3797 8909 5.923684 GCGGTAACCATTGAAAATCTTGAAA 59.076 36.000 0.00 0.00 0.00 2.69
3798 8910 6.589907 GCGGTAACCATTGAAAATCTTGAAAT 59.410 34.615 0.00 0.00 0.00 2.17
3799 8911 7.117667 GCGGTAACCATTGAAAATCTTGAAATT 59.882 33.333 0.00 0.00 0.00 1.82
3800 8912 8.987890 CGGTAACCATTGAAAATCTTGAAATTT 58.012 29.630 0.00 0.00 0.00 1.82
3803 8915 8.885494 AACCATTGAAAATCTTGAAATTTCGA 57.115 26.923 13.34 10.62 36.17 3.71
3804 8916 8.298030 ACCATTGAAAATCTTGAAATTTCGAC 57.702 30.769 13.34 0.00 36.17 4.20
3805 8917 7.384932 ACCATTGAAAATCTTGAAATTTCGACC 59.615 33.333 13.34 0.00 36.17 4.79
3806 8918 6.984740 TTGAAAATCTTGAAATTTCGACCG 57.015 33.333 13.34 1.46 36.17 4.79
3807 8919 5.457140 TGAAAATCTTGAAATTTCGACCGG 58.543 37.500 13.34 0.00 36.17 5.28
3808 8920 5.009210 TGAAAATCTTGAAATTTCGACCGGT 59.991 36.000 6.92 6.92 36.17 5.28
3809 8921 6.205076 TGAAAATCTTGAAATTTCGACCGGTA 59.795 34.615 7.34 0.00 36.17 4.02
3810 8922 6.563222 AAATCTTGAAATTTCGACCGGTAA 57.437 33.333 7.34 0.00 0.00 2.85
3811 8923 4.996062 TCTTGAAATTTCGACCGGTAAC 57.004 40.909 7.34 0.00 0.00 2.50
3812 8924 3.747529 TCTTGAAATTTCGACCGGTAACC 59.252 43.478 7.34 0.00 0.00 2.85
3813 8925 3.123157 TGAAATTTCGACCGGTAACCA 57.877 42.857 7.34 0.00 0.00 3.67
3814 8926 3.474600 TGAAATTTCGACCGGTAACCAA 58.525 40.909 7.34 0.00 0.00 3.67
3815 8927 3.881688 TGAAATTTCGACCGGTAACCAAA 59.118 39.130 7.34 4.53 0.00 3.28
3816 8928 4.337555 TGAAATTTCGACCGGTAACCAAAA 59.662 37.500 7.34 4.39 0.00 2.44
3817 8929 3.902261 ATTTCGACCGGTAACCAAAAC 57.098 42.857 7.34 0.00 0.00 2.43
3818 8930 1.592064 TTCGACCGGTAACCAAAACC 58.408 50.000 7.34 0.00 0.00 3.27
3819 8931 0.758123 TCGACCGGTAACCAAAACCT 59.242 50.000 7.34 0.00 34.66 3.50
3820 8932 1.140652 TCGACCGGTAACCAAAACCTT 59.859 47.619 7.34 0.00 34.66 3.50
3821 8933 1.264826 CGACCGGTAACCAAAACCTTG 59.735 52.381 7.34 0.00 34.66 3.61
3933 9054 4.945543 TCAATGTGCTTGCACTCTGATAAT 59.054 37.500 23.53 6.92 34.66 1.28
3934 9055 5.416639 TCAATGTGCTTGCACTCTGATAATT 59.583 36.000 23.53 11.87 34.66 1.40
3935 9056 4.690184 TGTGCTTGCACTCTGATAATTG 57.310 40.909 23.53 0.00 0.00 2.32
3936 9057 3.441222 TGTGCTTGCACTCTGATAATTGG 59.559 43.478 23.53 0.00 0.00 3.16
3937 9058 3.441572 GTGCTTGCACTCTGATAATTGGT 59.558 43.478 17.36 0.00 0.00 3.67
3938 9059 4.635765 GTGCTTGCACTCTGATAATTGGTA 59.364 41.667 17.36 0.00 0.00 3.25
3939 9060 4.635765 TGCTTGCACTCTGATAATTGGTAC 59.364 41.667 0.00 0.00 0.00 3.34
3971 9092 4.417437 ACAGGGCAAGTAGAAGAAGACTA 58.583 43.478 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.715439 ACCTGGTGGATAATCATCAAGAA 57.285 39.130 0.00 0.00 37.04 2.52
25 26 3.307762 GCCCTACCTGGTGGATAATCATC 60.308 52.174 12.27 0.00 37.04 2.92
38 39 0.673644 CGGTGAGTTTGCCCTACCTG 60.674 60.000 0.00 0.00 0.00 4.00
75 76 1.472201 CGATCACATGTCCCTCCACAG 60.472 57.143 0.00 0.00 0.00 3.66
92 93 4.405680 TCAATATCACCTCAGTTGGTCGAT 59.594 41.667 0.00 0.00 38.45 3.59
136 137 2.772287 AGGCTTATCTAAAGCGCCATC 58.228 47.619 2.29 0.00 43.89 3.51
167 168 2.355126 CGGGATCTGGCGACGATG 60.355 66.667 0.00 0.00 0.00 3.84
197 198 1.885887 GAGACGGATCTCCTGAGGATG 59.114 57.143 0.00 0.00 45.06 3.51
198 199 2.286365 GAGACGGATCTCCTGAGGAT 57.714 55.000 0.00 0.00 45.06 3.24
208 209 0.965439 CCTGAGATGGGAGACGGATC 59.035 60.000 0.00 0.00 0.00 3.36
212 213 1.885887 GAGATCCTGAGATGGGAGACG 59.114 57.143 0.00 0.00 36.21 4.18
221 222 1.464734 GTCACCGTGAGATCCTGAGA 58.535 55.000 0.08 0.00 0.00 3.27
245 246 2.488545 TGAAGACTTGGTAGACGCTCTC 59.511 50.000 0.00 0.00 0.00 3.20
248 249 3.511934 AGAATGAAGACTTGGTAGACGCT 59.488 43.478 0.00 0.00 0.00 5.07
265 266 4.635925 CGATCCCGTCGGAGAATG 57.364 61.111 14.39 0.00 46.47 2.67
288 289 1.339610 CAAAAAGGTGCGGATGGACAA 59.660 47.619 0.00 0.00 38.35 3.18
297 298 2.642700 CGGGGACAAAAAGGTGCG 59.357 61.111 0.00 0.00 0.00 5.34
301 302 4.050934 GCGGCGGGGACAAAAAGG 62.051 66.667 9.78 0.00 0.00 3.11
314 315 4.165486 TTAACCCTAGGCGGCGGC 62.165 66.667 27.24 27.24 38.90 6.53
316 317 0.808847 GAACTTAACCCTAGGCGGCG 60.809 60.000 2.05 0.51 0.00 6.46
345 357 2.592222 GGCGCGCGTAGGTTATTCC 61.592 63.158 32.35 16.56 0.00 3.01
357 369 3.497031 GAAACCTGGTAGGCGCGC 61.497 66.667 25.94 25.94 39.63 6.86
360 372 2.551644 GGTTGAAACCTGGTAGGCG 58.448 57.895 0.00 0.00 45.75 5.52
369 381 3.989817 GTGCAATCATCTTGGTTGAAACC 59.010 43.478 5.21 5.21 40.81 3.27
370 382 3.989817 GGTGCAATCATCTTGGTTGAAAC 59.010 43.478 4.73 0.00 40.81 2.78
376 399 1.742761 CGAGGTGCAATCATCTTGGT 58.257 50.000 0.00 0.00 32.83 3.67
402 425 4.704833 TCCTCTGCTTGCACCGCC 62.705 66.667 4.85 0.00 0.00 6.13
403 426 3.426568 GTCCTCTGCTTGCACCGC 61.427 66.667 0.32 0.32 0.00 5.68
406 429 3.426568 GCCGTCCTCTGCTTGCAC 61.427 66.667 0.00 0.00 0.00 4.57
408 431 4.742201 TCGCCGTCCTCTGCTTGC 62.742 66.667 0.00 0.00 0.00 4.01
409 432 2.811317 GTCGCCGTCCTCTGCTTG 60.811 66.667 0.00 0.00 0.00 4.01
410 433 4.070552 GGTCGCCGTCCTCTGCTT 62.071 66.667 0.00 0.00 0.00 3.91
422 451 1.516603 GTTAGTCCTGCTCGGTCGC 60.517 63.158 0.00 0.00 0.00 5.19
423 452 0.099082 GAGTTAGTCCTGCTCGGTCG 59.901 60.000 0.00 0.00 0.00 4.79
429 458 2.043252 AGTACTGGGAGTTAGTCCTGCT 59.957 50.000 6.02 0.00 46.06 4.24
431 460 5.262804 AGTAAGTACTGGGAGTTAGTCCTG 58.737 45.833 6.02 2.53 46.06 3.86
432 461 5.533333 AGTAAGTACTGGGAGTTAGTCCT 57.467 43.478 6.02 0.00 46.06 3.85
444 473 7.710161 CATGTCATCATCGCCAGTAAGTACTG 61.710 46.154 10.91 10.91 41.50 2.74
445 474 3.699538 TGTCATCATCGCCAGTAAGTACT 59.300 43.478 0.00 0.00 36.90 2.73
447 476 4.620982 CATGTCATCATCGCCAGTAAGTA 58.379 43.478 0.00 0.00 31.15 2.24
449 478 2.222678 GCATGTCATCATCGCCAGTAAG 59.777 50.000 0.00 0.00 31.15 2.34
453 2417 0.816421 TGGCATGTCATCATCGCCAG 60.816 55.000 9.88 0.00 44.66 4.85
454 2418 1.096967 GTGGCATGTCATCATCGCCA 61.097 55.000 1.89 9.88 45.87 5.69
485 2449 3.986006 TCGTGGACTCGTGGTGCC 61.986 66.667 1.46 0.00 35.29 5.01
486 2450 2.733593 GTCGTGGACTCGTGGTGC 60.734 66.667 0.00 0.00 36.78 5.01
487 2451 2.396747 TTCGTCGTGGACTCGTGGTG 62.397 60.000 0.00 0.00 0.00 4.17
489 2453 1.442184 CTTCGTCGTGGACTCGTGG 60.442 63.158 0.00 0.00 0.00 4.94
490 2454 2.081212 GCTTCGTCGTGGACTCGTG 61.081 63.158 0.00 0.00 0.00 4.35
491 2455 2.254651 GCTTCGTCGTGGACTCGT 59.745 61.111 0.00 0.00 0.00 4.18
492 2456 1.797933 CTGCTTCGTCGTGGACTCG 60.798 63.158 0.00 0.00 0.00 4.18
493 2457 0.455295 CTCTGCTTCGTCGTGGACTC 60.455 60.000 0.00 0.00 0.00 3.36
496 2460 2.201436 GAGCTCTGCTTCGTCGTGGA 62.201 60.000 6.43 0.00 39.88 4.02
497 2461 1.803519 GAGCTCTGCTTCGTCGTGG 60.804 63.158 6.43 0.00 39.88 4.94
498 2462 2.148982 CGAGCTCTGCTTCGTCGTG 61.149 63.158 12.85 0.00 39.88 4.35
499 2463 2.177038 CGAGCTCTGCTTCGTCGT 59.823 61.111 12.85 0.00 39.88 4.34
502 2466 2.180518 GAGCGAGCTCTGCTTCGT 59.819 61.111 26.17 10.80 44.18 3.85
519 2483 1.473434 GGGCAGGAACCAAGTCGATAG 60.473 57.143 0.00 0.00 0.00 2.08
520 2484 0.539986 GGGCAGGAACCAAGTCGATA 59.460 55.000 0.00 0.00 0.00 2.92
521 2485 1.201429 AGGGCAGGAACCAAGTCGAT 61.201 55.000 0.00 0.00 0.00 3.59
522 2486 0.543410 TAGGGCAGGAACCAAGTCGA 60.543 55.000 0.00 0.00 0.00 4.20
523 2487 0.323629 TTAGGGCAGGAACCAAGTCG 59.676 55.000 0.00 0.00 0.00 4.18
524 2488 1.950954 GCTTAGGGCAGGAACCAAGTC 60.951 57.143 0.00 0.00 41.35 3.01
525 2489 0.038310 GCTTAGGGCAGGAACCAAGT 59.962 55.000 0.00 0.00 41.35 3.16
526 2490 0.329596 AGCTTAGGGCAGGAACCAAG 59.670 55.000 0.00 0.00 44.79 3.61
528 2492 1.685224 CAGCTTAGGGCAGGAACCA 59.315 57.895 0.00 0.00 44.79 3.67
529 2493 4.645809 CAGCTTAGGGCAGGAACC 57.354 61.111 0.00 0.00 44.79 3.62
537 2501 0.465705 TCAATCGAGCCAGCTTAGGG 59.534 55.000 0.00 0.00 0.00 3.53
539 2503 1.137872 AGGTCAATCGAGCCAGCTTAG 59.862 52.381 0.00 0.00 40.69 2.18
540 2504 1.195115 AGGTCAATCGAGCCAGCTTA 58.805 50.000 0.00 0.00 40.69 3.09
541 2505 0.326264 AAGGTCAATCGAGCCAGCTT 59.674 50.000 0.00 0.00 40.69 3.74
543 2507 1.424493 CGAAGGTCAATCGAGCCAGC 61.424 60.000 0.00 0.00 42.76 4.85
544 2508 0.173481 TCGAAGGTCAATCGAGCCAG 59.827 55.000 0.00 0.00 43.76 4.85
566 2530 1.017177 CGCAGGCTACGGTGCTAAAA 61.017 55.000 0.00 0.00 37.55 1.52
567 2531 1.447140 CGCAGGCTACGGTGCTAAA 60.447 57.895 0.00 0.00 37.55 1.85
568 2532 1.672854 ATCGCAGGCTACGGTGCTAA 61.673 55.000 7.37 0.00 37.55 3.09
569 2533 0.820482 TATCGCAGGCTACGGTGCTA 60.820 55.000 7.37 0.00 37.55 3.49
570 2534 1.464376 ATATCGCAGGCTACGGTGCT 61.464 55.000 7.37 0.00 37.55 4.40
571 2535 1.006102 ATATCGCAGGCTACGGTGC 60.006 57.895 7.37 0.00 36.27 5.01
573 2537 1.006102 GCATATCGCAGGCTACGGT 60.006 57.895 7.37 2.00 41.79 4.83
574 2538 3.862124 GCATATCGCAGGCTACGG 58.138 61.111 7.37 0.00 41.79 4.02
584 2548 3.546815 GCAAGCTTTGTACCTGCATATCG 60.547 47.826 0.00 0.00 0.00 2.92
585 2549 3.243201 GGCAAGCTTTGTACCTGCATATC 60.243 47.826 0.00 0.00 0.00 1.63
586 2550 2.689983 GGCAAGCTTTGTACCTGCATAT 59.310 45.455 0.00 0.00 0.00 1.78
587 2551 2.091541 GGCAAGCTTTGTACCTGCATA 58.908 47.619 0.00 0.00 0.00 3.14
589 2553 0.178992 AGGCAAGCTTTGTACCTGCA 60.179 50.000 0.00 0.00 0.00 4.41
593 2557 1.616159 TTGGAGGCAAGCTTTGTACC 58.384 50.000 0.00 0.00 0.00 3.34
594 2558 5.278022 GCTATATTGGAGGCAAGCTTTGTAC 60.278 44.000 0.00 0.00 0.00 2.90
597 2561 3.005155 GGCTATATTGGAGGCAAGCTTTG 59.995 47.826 0.00 0.00 39.24 2.77
598 2562 3.225940 GGCTATATTGGAGGCAAGCTTT 58.774 45.455 0.00 0.00 39.24 3.51
599 2563 2.811873 CGGCTATATTGGAGGCAAGCTT 60.812 50.000 0.00 0.00 39.38 3.74
600 2564 1.271054 CGGCTATATTGGAGGCAAGCT 60.271 52.381 0.00 0.00 39.38 3.74
602 2566 2.839486 TCGGCTATATTGGAGGCAAG 57.161 50.000 0.00 0.00 39.38 4.01
603 2567 3.072330 TCAATCGGCTATATTGGAGGCAA 59.928 43.478 0.00 0.00 39.38 4.52
604 2568 2.637382 TCAATCGGCTATATTGGAGGCA 59.363 45.455 0.00 0.00 39.38 4.75
617 2581 0.033504 TCCGGCTAGAATCAATCGGC 59.966 55.000 0.00 0.00 37.65 5.54
618 2582 2.135933 GTTCCGGCTAGAATCAATCGG 58.864 52.381 0.00 0.00 38.92 4.18
714 4052 1.563111 AACAACTGTACCGTGACGTG 58.437 50.000 3.64 0.00 0.00 4.49
728 4066 4.319261 CGACTAGGTTTGCCTGTAAACAAC 60.319 45.833 11.92 0.00 46.47 3.32
760 4992 4.250116 AGGACTAGTACGTCGACGATAT 57.750 45.455 41.52 26.85 43.02 1.63
763 4995 2.423892 AGTAGGACTAGTACGTCGACGA 59.576 50.000 41.52 23.28 43.02 4.20
764 4996 2.786578 GAGTAGGACTAGTACGTCGACG 59.213 54.545 34.58 34.58 46.33 5.12
1013 5558 6.101650 ACATGATATCGTTTATCAGCTCCA 57.898 37.500 0.00 0.00 37.37 3.86
1050 5631 1.302033 CTCCAGCAAGTCTTGGCGT 60.302 57.895 14.40 0.00 34.54 5.68
1167 5760 3.056250 GCAGTGAGTCCATCTTCTTCTGA 60.056 47.826 0.00 0.00 0.00 3.27
1221 5814 4.469945 TCTTGGAGGGTGAAATCGAAGTAT 59.530 41.667 0.00 0.00 34.17 2.12
1284 5877 2.363683 GCATGGGAGTTGGAGAGAAAG 58.636 52.381 0.00 0.00 0.00 2.62
1309 5902 2.941453 TCTGCATTGTACGAGGAGAC 57.059 50.000 0.00 0.00 0.00 3.36
1368 5961 4.583871 CTGGCTTGTGTAAGAGATCCTTT 58.416 43.478 2.37 0.00 35.92 3.11
1380 5973 3.241530 TCCTCGGCTGGCTTGTGT 61.242 61.111 0.00 0.00 0.00 3.72
1400 5993 3.299503 TCATCATCATCCTTCTCGACCA 58.700 45.455 0.00 0.00 0.00 4.02
1437 6096 2.673368 GAGACGCAAGAATTCGTTGGAT 59.327 45.455 15.09 0.00 39.22 3.41
1462 6121 2.393271 GGTCTCTCCCTGACATTGTG 57.607 55.000 0.00 0.00 36.26 3.33
1509 6168 0.458543 CGTCCTCCTCCGTGAACATG 60.459 60.000 0.00 0.00 0.00 3.21
1575 6234 1.852965 CTCCTCTTCTCCTCCCTCTCT 59.147 57.143 0.00 0.00 0.00 3.10
1665 6336 0.449388 CTTTGAGACGCTCCATTGGC 59.551 55.000 0.00 0.00 0.00 4.52
1870 6830 6.151817 GGTGTTCTGCTGAAATTCCTTTAGAT 59.848 38.462 7.68 0.00 33.52 1.98
1874 6834 3.960102 TGGTGTTCTGCTGAAATTCCTTT 59.040 39.130 7.68 0.00 33.52 3.11
1878 6838 4.574599 AGTTGGTGTTCTGCTGAAATTC 57.425 40.909 7.68 2.04 33.52 2.17
1891 6851 1.747444 ATGAGGGAGGAAGTTGGTGT 58.253 50.000 0.00 0.00 0.00 4.16
1991 6982 0.183492 AGGACTCAAAGTGGCTGCAA 59.817 50.000 0.50 0.00 0.00 4.08
2325 7335 5.303971 AGAGTCCTGCAAGCATTATATCAC 58.696 41.667 0.00 0.00 0.00 3.06
2485 7508 5.774690 TGGAAGCATAAAGGTTGTTCTGAAT 59.225 36.000 0.00 0.00 38.24 2.57
2618 7641 2.388232 GGTGCAAGTAACTCGGCCG 61.388 63.158 22.12 22.12 0.00 6.13
2884 7922 1.003118 TGATGTCCACCTTAGTGCCAC 59.997 52.381 0.00 0.00 43.09 5.01
2970 8008 0.600255 GGCAAGACAGCACACTACGT 60.600 55.000 0.00 0.00 35.83 3.57
3000 8041 9.066892 CATACAAATAACATACCACTAGCCAAT 57.933 33.333 0.00 0.00 0.00 3.16
3252 8355 5.368145 TGCAGTTACCACCTTATGATGATC 58.632 41.667 0.00 0.00 0.00 2.92
3314 8419 3.028094 GGGACCTGACACTGGATACTA 57.972 52.381 0.00 0.00 37.61 1.82
3334 8439 1.072965 GAGCCATCTAACATCCCTGGG 59.927 57.143 6.33 6.33 0.00 4.45
3377 8484 6.659242 AGTCCTTGGTTACATATTTGGTTCAG 59.341 38.462 0.00 0.00 0.00 3.02
3460 8572 9.512435 GTTTTAGCTCACTACGTTATTGATCTA 57.488 33.333 0.00 0.00 0.00 1.98
3461 8573 7.491696 GGTTTTAGCTCACTACGTTATTGATCT 59.508 37.037 0.00 0.00 0.00 2.75
3467 8579 5.173664 GGTGGTTTTAGCTCACTACGTTAT 58.826 41.667 0.00 0.00 0.00 1.89
3479 8591 1.403647 GCCCAATTCGGTGGTTTTAGC 60.404 52.381 0.00 0.00 36.90 3.09
3480 8592 1.889829 TGCCCAATTCGGTGGTTTTAG 59.110 47.619 0.00 0.00 36.90 1.85
3481 8593 1.996798 TGCCCAATTCGGTGGTTTTA 58.003 45.000 0.00 0.00 36.90 1.52
3482 8594 1.123928 TTGCCCAATTCGGTGGTTTT 58.876 45.000 0.00 0.00 36.90 2.43
3483 8595 1.347062 ATTGCCCAATTCGGTGGTTT 58.653 45.000 0.00 0.00 36.90 3.27
3484 8596 1.347062 AATTGCCCAATTCGGTGGTT 58.653 45.000 0.57 0.00 36.34 3.67
3485 8597 1.347062 AAATTGCCCAATTCGGTGGT 58.653 45.000 6.70 0.00 39.88 4.16
3486 8598 2.470983 AAAATTGCCCAATTCGGTGG 57.529 45.000 6.70 0.00 39.88 4.61
3487 8599 3.258228 GGTAAAATTGCCCAATTCGGTG 58.742 45.455 6.70 0.00 39.88 4.94
3488 8600 2.094442 CGGTAAAATTGCCCAATTCGGT 60.094 45.455 6.70 0.00 39.88 4.69
3489 8601 2.164624 TCGGTAAAATTGCCCAATTCGG 59.835 45.455 6.70 0.99 39.88 4.30
3490 8602 3.434637 CTCGGTAAAATTGCCCAATTCG 58.565 45.455 6.70 6.49 39.88 3.34
3491 8603 3.430236 CCCTCGGTAAAATTGCCCAATTC 60.430 47.826 6.70 0.00 39.88 2.17
3492 8604 2.499693 CCCTCGGTAAAATTGCCCAATT 59.500 45.455 0.57 0.57 42.35 2.32
3493 8605 2.107366 CCCTCGGTAAAATTGCCCAAT 58.893 47.619 0.00 0.00 0.00 3.16
3494 8606 1.551452 CCCTCGGTAAAATTGCCCAA 58.449 50.000 0.00 0.00 0.00 4.12
3495 8607 0.323908 CCCCTCGGTAAAATTGCCCA 60.324 55.000 0.00 0.00 0.00 5.36
3496 8608 1.040893 CCCCCTCGGTAAAATTGCCC 61.041 60.000 0.00 0.00 0.00 5.36
3497 8609 0.033894 TCCCCCTCGGTAAAATTGCC 60.034 55.000 0.00 0.00 0.00 4.52
3498 8610 1.100510 GTCCCCCTCGGTAAAATTGC 58.899 55.000 0.00 0.00 0.00 3.56
3499 8611 2.365582 CAGTCCCCCTCGGTAAAATTG 58.634 52.381 0.00 0.00 0.00 2.32
3500 8612 1.283905 CCAGTCCCCCTCGGTAAAATT 59.716 52.381 0.00 0.00 0.00 1.82
3501 8613 0.916809 CCAGTCCCCCTCGGTAAAAT 59.083 55.000 0.00 0.00 0.00 1.82
3502 8614 0.474273 ACCAGTCCCCCTCGGTAAAA 60.474 55.000 0.00 0.00 0.00 1.52
3503 8615 0.413037 TACCAGTCCCCCTCGGTAAA 59.587 55.000 0.00 0.00 31.10 2.01
3504 8616 0.413037 TTACCAGTCCCCCTCGGTAA 59.587 55.000 0.00 0.00 40.74 2.85
3505 8617 0.413037 TTTACCAGTCCCCCTCGGTA 59.587 55.000 0.00 0.00 32.81 4.02
3506 8618 1.159184 TTTACCAGTCCCCCTCGGT 59.841 57.895 0.00 0.00 35.46 4.69
3507 8619 1.600638 GTTTACCAGTCCCCCTCGG 59.399 63.158 0.00 0.00 0.00 4.63
3508 8620 1.217244 CGTTTACCAGTCCCCCTCG 59.783 63.158 0.00 0.00 0.00 4.63
3509 8621 0.036671 CACGTTTACCAGTCCCCCTC 60.037 60.000 0.00 0.00 0.00 4.30
3510 8622 1.486145 CCACGTTTACCAGTCCCCCT 61.486 60.000 0.00 0.00 0.00 4.79
3511 8623 1.002990 CCACGTTTACCAGTCCCCC 60.003 63.158 0.00 0.00 0.00 5.40
3512 8624 0.109153 AACCACGTTTACCAGTCCCC 59.891 55.000 0.00 0.00 0.00 4.81
3513 8625 2.416747 GTAACCACGTTTACCAGTCCC 58.583 52.381 0.00 0.00 0.00 4.46
3537 8649 4.601019 TCGTCGAAATATTCTCGGTAACC 58.399 43.478 15.30 0.00 36.93 2.85
3538 8650 6.744550 AATCGTCGAAATATTCTCGGTAAC 57.255 37.500 15.30 8.83 36.93 2.50
3539 8651 7.760131 AAAATCGTCGAAATATTCTCGGTAA 57.240 32.000 15.30 6.18 36.93 2.85
3541 8653 7.941795 ATAAAATCGTCGAAATATTCTCGGT 57.058 32.000 15.30 2.41 36.93 4.69
3542 8654 9.125906 AGTATAAAATCGTCGAAATATTCTCGG 57.874 33.333 15.30 5.62 36.93 4.63
3576 8688 9.912634 GTTCCTTCATTCACTCATTTGAATTTA 57.087 29.630 0.00 0.00 42.45 1.40
3577 8689 8.423349 TGTTCCTTCATTCACTCATTTGAATTT 58.577 29.630 0.00 0.00 42.45 1.82
3578 8690 7.954835 TGTTCCTTCATTCACTCATTTGAATT 58.045 30.769 0.00 0.00 42.45 2.17
3579 8691 7.528996 TGTTCCTTCATTCACTCATTTGAAT 57.471 32.000 0.00 0.00 45.32 2.57
3580 8692 6.957920 TGTTCCTTCATTCACTCATTTGAA 57.042 33.333 0.00 0.00 39.79 2.69
3581 8693 7.528996 AATGTTCCTTCATTCACTCATTTGA 57.471 32.000 0.00 0.00 33.43 2.69
3591 8703 4.695455 TCTGGTTCGAATGTTCCTTCATTC 59.305 41.667 0.00 8.72 45.70 2.67
3592 8704 4.651778 TCTGGTTCGAATGTTCCTTCATT 58.348 39.130 0.00 0.00 40.20 2.57
3593 8705 4.256920 CTCTGGTTCGAATGTTCCTTCAT 58.743 43.478 0.00 0.00 0.00 2.57
3594 8706 3.557054 CCTCTGGTTCGAATGTTCCTTCA 60.557 47.826 0.00 0.00 0.00 3.02
3595 8707 3.003480 CCTCTGGTTCGAATGTTCCTTC 58.997 50.000 0.00 0.00 0.00 3.46
3596 8708 2.876079 GCCTCTGGTTCGAATGTTCCTT 60.876 50.000 0.00 0.00 0.00 3.36
3597 8709 1.339151 GCCTCTGGTTCGAATGTTCCT 60.339 52.381 0.00 0.00 0.00 3.36
3598 8710 1.087501 GCCTCTGGTTCGAATGTTCC 58.912 55.000 0.00 0.00 0.00 3.62
3599 8711 1.087501 GGCCTCTGGTTCGAATGTTC 58.912 55.000 0.00 0.00 0.00 3.18
3600 8712 0.693049 AGGCCTCTGGTTCGAATGTT 59.307 50.000 0.00 0.00 0.00 2.71
3601 8713 0.250513 GAGGCCTCTGGTTCGAATGT 59.749 55.000 26.25 0.00 0.00 2.71
3602 8714 0.539051 AGAGGCCTCTGGTTCGAATG 59.461 55.000 34.74 0.00 38.75 2.67
3603 8715 0.827368 GAGAGGCCTCTGGTTCGAAT 59.173 55.000 39.86 13.00 40.61 3.34
3604 8716 0.541998 TGAGAGGCCTCTGGTTCGAA 60.542 55.000 39.86 12.79 40.61 3.71
3605 8717 0.541998 TTGAGAGGCCTCTGGTTCGA 60.542 55.000 39.86 21.60 40.61 3.71
3606 8718 0.321671 TTTGAGAGGCCTCTGGTTCG 59.678 55.000 39.86 0.00 40.61 3.95
3607 8719 2.155279 GTTTTGAGAGGCCTCTGGTTC 58.845 52.381 39.86 24.72 40.61 3.62
3608 8720 1.494721 TGTTTTGAGAGGCCTCTGGTT 59.505 47.619 39.86 16.85 40.61 3.67
3609 8721 1.140312 TGTTTTGAGAGGCCTCTGGT 58.860 50.000 39.86 17.28 40.61 4.00
3610 8722 2.089980 CATGTTTTGAGAGGCCTCTGG 58.910 52.381 39.86 13.78 40.61 3.86
3611 8723 3.063510 TCATGTTTTGAGAGGCCTCTG 57.936 47.619 39.86 22.56 40.61 3.35
3612 8724 3.073650 ACTTCATGTTTTGAGAGGCCTCT 59.926 43.478 35.74 35.74 43.78 3.69
3613 8725 3.416156 ACTTCATGTTTTGAGAGGCCTC 58.584 45.455 26.22 26.22 39.86 4.70
3614 8726 3.515602 ACTTCATGTTTTGAGAGGCCT 57.484 42.857 3.86 3.86 35.27 5.19
3615 8727 3.691609 CCTACTTCATGTTTTGAGAGGCC 59.308 47.826 0.00 0.00 35.27 5.19
3616 8728 4.327680 ACCTACTTCATGTTTTGAGAGGC 58.672 43.478 0.00 0.00 35.47 4.70
3617 8729 5.335191 GCAACCTACTTCATGTTTTGAGAGG 60.335 44.000 0.00 0.00 36.93 3.69
3618 8730 5.471456 AGCAACCTACTTCATGTTTTGAGAG 59.529 40.000 0.00 0.00 35.27 3.20
3619 8731 5.376625 AGCAACCTACTTCATGTTTTGAGA 58.623 37.500 0.00 0.00 35.27 3.27
3620 8732 5.695851 AGCAACCTACTTCATGTTTTGAG 57.304 39.130 0.00 0.00 35.27 3.02
3621 8733 5.472137 GGTAGCAACCTACTTCATGTTTTGA 59.528 40.000 0.00 0.00 42.85 2.69
3622 8734 5.240623 TGGTAGCAACCTACTTCATGTTTTG 59.759 40.000 0.00 0.00 46.91 2.44
3623 8735 5.381757 TGGTAGCAACCTACTTCATGTTTT 58.618 37.500 0.00 0.00 46.91 2.43
3624 8736 4.980573 TGGTAGCAACCTACTTCATGTTT 58.019 39.130 0.00 0.00 46.91 2.83
3625 8737 4.634012 TGGTAGCAACCTACTTCATGTT 57.366 40.909 0.00 0.00 46.91 2.71
3626 8738 4.324267 GTTGGTAGCAACCTACTTCATGT 58.676 43.478 24.08 0.00 46.91 3.21
3627 8739 4.946784 GTTGGTAGCAACCTACTTCATG 57.053 45.455 24.08 0.00 46.91 3.07
3634 8746 1.687660 TGACGTGTTGGTAGCAACCTA 59.312 47.619 29.46 13.49 46.91 3.08
3635 8747 0.466543 TGACGTGTTGGTAGCAACCT 59.533 50.000 29.46 15.29 46.91 3.50
3636 8748 1.301423 TTGACGTGTTGGTAGCAACC 58.699 50.000 29.46 20.70 46.98 3.77
3637 8749 3.103007 GTTTTGACGTGTTGGTAGCAAC 58.897 45.455 26.90 26.90 35.75 4.17
3638 8750 2.747989 TGTTTTGACGTGTTGGTAGCAA 59.252 40.909 2.54 2.54 0.00 3.91
3639 8751 2.357075 TGTTTTGACGTGTTGGTAGCA 58.643 42.857 0.00 0.00 0.00 3.49
3640 8752 3.408288 TTGTTTTGACGTGTTGGTAGC 57.592 42.857 0.00 0.00 0.00 3.58
3641 8753 4.976987 AGTTTGTTTTGACGTGTTGGTAG 58.023 39.130 0.00 0.00 0.00 3.18
3642 8754 4.696402 AGAGTTTGTTTTGACGTGTTGGTA 59.304 37.500 0.00 0.00 0.00 3.25
3643 8755 3.504520 AGAGTTTGTTTTGACGTGTTGGT 59.495 39.130 0.00 0.00 0.00 3.67
3644 8756 4.091453 AGAGTTTGTTTTGACGTGTTGG 57.909 40.909 0.00 0.00 0.00 3.77
3645 8757 4.717991 TGAGAGTTTGTTTTGACGTGTTG 58.282 39.130 0.00 0.00 0.00 3.33
3646 8758 5.123186 TCATGAGAGTTTGTTTTGACGTGTT 59.877 36.000 0.00 0.00 0.00 3.32
3647 8759 4.634004 TCATGAGAGTTTGTTTTGACGTGT 59.366 37.500 0.00 0.00 0.00 4.49
3648 8760 5.155509 TCATGAGAGTTTGTTTTGACGTG 57.844 39.130 0.00 0.00 0.00 4.49
3649 8761 7.672983 ATATCATGAGAGTTTGTTTTGACGT 57.327 32.000 0.09 0.00 0.00 4.34
3682 8794 9.956720 GCTTGATTTATAGTAAAGTACGTAGGA 57.043 33.333 0.00 0.00 0.00 2.94
3683 8795 8.899776 CGCTTGATTTATAGTAAAGTACGTAGG 58.100 37.037 0.00 0.00 0.00 3.18
3684 8796 9.443283 ACGCTTGATTTATAGTAAAGTACGTAG 57.557 33.333 0.00 0.00 0.00 3.51
3685 8797 9.787532 AACGCTTGATTTATAGTAAAGTACGTA 57.212 29.630 0.00 0.00 0.00 3.57
3686 8798 8.693542 AACGCTTGATTTATAGTAAAGTACGT 57.306 30.769 0.00 0.00 0.00 3.57
3731 8843 5.046231 GGTAAATCCCCATACCAAGCAAAAA 60.046 40.000 0.00 0.00 41.05 1.94
3732 8844 4.468153 GGTAAATCCCCATACCAAGCAAAA 59.532 41.667 0.00 0.00 41.05 2.44
3733 8845 4.027437 GGTAAATCCCCATACCAAGCAAA 58.973 43.478 0.00 0.00 41.05 3.68
3734 8846 3.637769 GGTAAATCCCCATACCAAGCAA 58.362 45.455 0.00 0.00 41.05 3.91
3735 8847 2.422235 CGGTAAATCCCCATACCAAGCA 60.422 50.000 3.19 0.00 41.37 3.91
3736 8848 2.158726 TCGGTAAATCCCCATACCAAGC 60.159 50.000 3.19 0.00 41.37 4.01
3737 8849 3.496160 CCTCGGTAAATCCCCATACCAAG 60.496 52.174 3.19 0.00 41.37 3.61
3738 8850 2.440253 CCTCGGTAAATCCCCATACCAA 59.560 50.000 3.19 0.00 41.37 3.67
3739 8851 2.051692 CCTCGGTAAATCCCCATACCA 58.948 52.381 3.19 0.00 41.37 3.25
3740 8852 1.350019 CCCTCGGTAAATCCCCATACC 59.650 57.143 0.00 0.00 38.55 2.73
3741 8853 1.350019 CCCCTCGGTAAATCCCCATAC 59.650 57.143 0.00 0.00 0.00 2.39
3742 8854 1.737199 CCCCTCGGTAAATCCCCATA 58.263 55.000 0.00 0.00 0.00 2.74
3743 8855 1.716028 GCCCCTCGGTAAATCCCCAT 61.716 60.000 0.00 0.00 0.00 4.00
3744 8856 2.380285 GCCCCTCGGTAAATCCCCA 61.380 63.158 0.00 0.00 0.00 4.96
3745 8857 2.514395 GCCCCTCGGTAAATCCCC 59.486 66.667 0.00 0.00 0.00 4.81
3746 8858 2.110420 CGCCCCTCGGTAAATCCC 59.890 66.667 0.00 0.00 33.78 3.85
3747 8859 2.590859 GCGCCCCTCGGTAAATCC 60.591 66.667 0.00 0.00 38.94 3.01
3748 8860 2.965462 CGCGCCCCTCGGTAAATC 60.965 66.667 0.00 0.00 38.94 2.17
3749 8861 4.540735 CCGCGCCCCTCGGTAAAT 62.541 66.667 0.00 0.00 41.85 1.40
3755 8867 2.030562 ATATTTCCGCGCCCCTCG 59.969 61.111 0.00 0.00 42.12 4.63
3756 8868 2.617274 GCATATTTCCGCGCCCCTC 61.617 63.158 0.00 0.00 0.00 4.30
3757 8869 2.594592 GCATATTTCCGCGCCCCT 60.595 61.111 0.00 0.00 0.00 4.79
3758 8870 4.025401 CGCATATTTCCGCGCCCC 62.025 66.667 0.00 0.00 45.57 5.80
3763 8875 1.301423 TGGTTACCGCATATTTCCGC 58.699 50.000 0.00 0.00 0.00 5.54
3764 8876 3.562141 TCAATGGTTACCGCATATTTCCG 59.438 43.478 0.00 0.00 0.00 4.30
3765 8877 5.508200 TTCAATGGTTACCGCATATTTCC 57.492 39.130 0.00 0.00 0.00 3.13
3766 8878 7.920682 AGATTTTCAATGGTTACCGCATATTTC 59.079 33.333 0.00 0.00 0.00 2.17
3767 8879 7.781056 AGATTTTCAATGGTTACCGCATATTT 58.219 30.769 0.00 0.00 0.00 1.40
3768 8880 7.346751 AGATTTTCAATGGTTACCGCATATT 57.653 32.000 0.00 0.00 0.00 1.28
3769 8881 6.959639 AGATTTTCAATGGTTACCGCATAT 57.040 33.333 0.00 0.00 0.00 1.78
3770 8882 6.375736 TCAAGATTTTCAATGGTTACCGCATA 59.624 34.615 0.00 0.00 0.00 3.14
3771 8883 5.184864 TCAAGATTTTCAATGGTTACCGCAT 59.815 36.000 0.00 0.00 0.00 4.73
3772 8884 4.520874 TCAAGATTTTCAATGGTTACCGCA 59.479 37.500 0.00 0.00 0.00 5.69
3773 8885 5.054390 TCAAGATTTTCAATGGTTACCGC 57.946 39.130 0.00 0.00 0.00 5.68
3774 8886 8.532977 AATTTCAAGATTTTCAATGGTTACCG 57.467 30.769 0.00 0.00 0.00 4.02
3777 8889 9.973450 TCGAAATTTCAAGATTTTCAATGGTTA 57.027 25.926 17.99 0.00 31.23 2.85
3778 8890 8.764287 GTCGAAATTTCAAGATTTTCAATGGTT 58.236 29.630 17.99 0.00 31.23 3.67
3779 8891 7.384932 GGTCGAAATTTCAAGATTTTCAATGGT 59.615 33.333 17.99 0.00 31.23 3.55
3780 8892 7.410728 CGGTCGAAATTTCAAGATTTTCAATGG 60.411 37.037 17.99 0.00 31.23 3.16
3781 8893 7.410728 CCGGTCGAAATTTCAAGATTTTCAATG 60.411 37.037 17.99 0.00 31.23 2.82
3782 8894 6.586082 CCGGTCGAAATTTCAAGATTTTCAAT 59.414 34.615 17.99 0.00 31.23 2.57
3783 8895 5.918011 CCGGTCGAAATTTCAAGATTTTCAA 59.082 36.000 17.99 0.00 31.23 2.69
3784 8896 5.009210 ACCGGTCGAAATTTCAAGATTTTCA 59.991 36.000 17.99 0.00 31.23 2.69
3785 8897 5.458015 ACCGGTCGAAATTTCAAGATTTTC 58.542 37.500 17.99 0.00 29.75 2.29
3786 8898 5.447624 ACCGGTCGAAATTTCAAGATTTT 57.552 34.783 17.99 0.00 29.75 1.82
3787 8899 6.376177 GTTACCGGTCGAAATTTCAAGATTT 58.624 36.000 12.40 0.99 32.16 2.17
3788 8900 5.106436 GGTTACCGGTCGAAATTTCAAGATT 60.106 40.000 12.40 0.52 0.00 2.40
3789 8901 4.393990 GGTTACCGGTCGAAATTTCAAGAT 59.606 41.667 12.40 1.22 0.00 2.40
3790 8902 3.747529 GGTTACCGGTCGAAATTTCAAGA 59.252 43.478 12.40 5.43 0.00 3.02
3791 8903 3.499157 TGGTTACCGGTCGAAATTTCAAG 59.501 43.478 12.40 3.07 0.00 3.02
3792 8904 3.474600 TGGTTACCGGTCGAAATTTCAA 58.525 40.909 12.40 0.00 0.00 2.69
3793 8905 3.123157 TGGTTACCGGTCGAAATTTCA 57.877 42.857 12.40 2.95 0.00 2.69
3794 8906 4.486574 TTTGGTTACCGGTCGAAATTTC 57.513 40.909 12.40 8.20 0.00 2.17
3795 8907 4.499526 GGTTTTGGTTACCGGTCGAAATTT 60.500 41.667 12.40 0.00 0.00 1.82
3796 8908 3.004629 GGTTTTGGTTACCGGTCGAAATT 59.995 43.478 12.40 0.00 0.00 1.82
3797 8909 2.553602 GGTTTTGGTTACCGGTCGAAAT 59.446 45.455 12.40 0.00 0.00 2.17
3798 8910 1.946081 GGTTTTGGTTACCGGTCGAAA 59.054 47.619 12.40 6.74 0.00 3.46
3799 8911 1.140652 AGGTTTTGGTTACCGGTCGAA 59.859 47.619 12.40 0.00 40.69 3.71
3800 8912 0.758123 AGGTTTTGGTTACCGGTCGA 59.242 50.000 12.40 0.00 40.69 4.20
3801 8913 1.264826 CAAGGTTTTGGTTACCGGTCG 59.735 52.381 12.40 0.00 40.69 4.79
3812 8924 4.301637 AGACGTTTTAGCCAAGGTTTTG 57.698 40.909 0.00 0.00 0.00 2.44
3813 8925 4.994907 AAGACGTTTTAGCCAAGGTTTT 57.005 36.364 0.00 0.00 0.00 2.43
3814 8926 4.883006 TGTAAGACGTTTTAGCCAAGGTTT 59.117 37.500 0.00 0.00 0.00 3.27
3815 8927 4.453751 TGTAAGACGTTTTAGCCAAGGTT 58.546 39.130 0.00 0.00 0.00 3.50
3816 8928 4.075963 TGTAAGACGTTTTAGCCAAGGT 57.924 40.909 0.00 0.00 0.00 3.50
3817 8929 5.622770 AATGTAAGACGTTTTAGCCAAGG 57.377 39.130 0.00 0.00 0.00 3.61
3818 8930 6.435428 ACAAATGTAAGACGTTTTAGCCAAG 58.565 36.000 0.00 0.00 35.31 3.61
3819 8931 6.380095 ACAAATGTAAGACGTTTTAGCCAA 57.620 33.333 0.00 0.00 35.31 4.52
3820 8932 6.380095 AACAAATGTAAGACGTTTTAGCCA 57.620 33.333 0.00 0.00 35.31 4.75
3821 8933 7.856894 TGTAAACAAATGTAAGACGTTTTAGCC 59.143 33.333 0.00 0.00 35.31 3.93
3822 8934 8.770850 TGTAAACAAATGTAAGACGTTTTAGC 57.229 30.769 0.00 0.00 35.31 3.09
3933 9054 3.492337 CCCTGTAAAAAGCTGGTACCAA 58.508 45.455 17.11 0.00 0.00 3.67
3934 9055 2.816337 GCCCTGTAAAAAGCTGGTACCA 60.816 50.000 15.39 15.39 0.00 3.25
3935 9056 1.816835 GCCCTGTAAAAAGCTGGTACC 59.183 52.381 4.43 4.43 0.00 3.34
3936 9057 2.510613 TGCCCTGTAAAAAGCTGGTAC 58.489 47.619 0.00 0.00 0.00 3.34
3937 9058 2.961531 TGCCCTGTAAAAAGCTGGTA 57.038 45.000 0.00 0.00 0.00 3.25
3938 9059 1.963515 CTTGCCCTGTAAAAAGCTGGT 59.036 47.619 0.00 0.00 0.00 4.00
3939 9060 1.963515 ACTTGCCCTGTAAAAAGCTGG 59.036 47.619 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.