Multiple sequence alignment - TraesCS2A01G569100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G569100 chr2A 100.000 2539 0 0 1 2539 766995820 766993282 0.000000e+00 4689
1 TraesCS2A01G569100 chr2D 93.882 850 45 4 874 1722 642128168 642127325 0.000000e+00 1275
2 TraesCS2A01G569100 chr2D 92.882 857 44 5 1465 2320 642020586 642019746 0.000000e+00 1229
3 TraesCS2A01G569100 chr2D 89.307 664 43 10 748 1410 642021845 642021209 0.000000e+00 808
4 TraesCS2A01G569100 chr2D 88.333 540 44 13 1 531 642030840 642030311 4.610000e-177 630
5 TraesCS2A01G569100 chr2D 97.183 213 4 1 2327 2537 352934138 352934350 2.400000e-95 359
6 TraesCS2A01G569100 chr2D 90.045 221 11 7 3 216 642132800 642132584 2.490000e-70 276
7 TraesCS2A01G569100 chr2D 94.479 163 8 1 557 719 642022284 642022123 1.510000e-62 250
8 TraesCS2A01G569100 chr2D 83.681 288 14 20 217 496 642132484 642132222 9.080000e-60 241
9 TraesCS2A01G569100 chr2D 96.396 111 3 1 605 715 642129697 642129588 5.580000e-42 182
10 TraesCS2A01G569100 chr6D 83.175 1367 168 31 941 2291 34306028 34304708 0.000000e+00 1194
11 TraesCS2A01G569100 chr6D 81.262 1062 167 18 941 1995 34297648 34296612 0.000000e+00 830
12 TraesCS2A01G569100 chr6D 75.283 1327 247 47 994 2287 33305623 33304345 2.210000e-155 558
13 TraesCS2A01G569100 chr6D 90.686 204 17 2 2089 2291 34296587 34296385 1.160000e-68 270
14 TraesCS2A01G569100 chr6D 87.560 209 22 4 2087 2292 34322710 34322503 3.260000e-59 239
15 TraesCS2A01G569100 chr6B 79.099 1110 201 22 818 1918 70571772 70570685 0.000000e+00 736
16 TraesCS2A01G569100 chr6B 74.762 947 181 34 994 1914 69720089 69719175 3.080000e-99 372
17 TraesCS2A01G569100 chr6A 75.455 1320 243 48 988 2292 38461682 38460429 3.670000e-158 568
18 TraesCS2A01G569100 chr6A 81.552 580 100 5 1341 1918 38111512 38110938 2.960000e-129 472
19 TraesCS2A01G569100 chr6A 75.476 893 192 19 1029 1917 38105049 38104180 6.540000e-111 411
20 TraesCS2A01G569100 chr6A 87.435 191 22 2 2094 2283 37707504 37707315 4.250000e-53 219
21 TraesCS2A01G569100 chr6A 89.941 169 17 0 2123 2291 38402422 38402254 4.250000e-53 219
22 TraesCS2A01G569100 chr3D 98.077 208 3 1 2330 2537 183167111 183166905 6.680000e-96 361
23 TraesCS2A01G569100 chr3D 98.049 205 4 0 2333 2537 149579422 149579218 8.640000e-95 357
24 TraesCS2A01G569100 chr3D 97.156 211 6 0 2327 2537 239336305 239336515 8.640000e-95 357
25 TraesCS2A01G569100 chr7D 97.156 211 6 0 2327 2537 46477492 46477702 8.640000e-95 357
26 TraesCS2A01G569100 chr5D 98.049 205 4 0 2333 2537 222992549 222992345 8.640000e-95 357
27 TraesCS2A01G569100 chr4D 97.596 208 5 0 2330 2537 38680759 38680552 8.640000e-95 357
28 TraesCS2A01G569100 chr4D 97.170 212 5 1 2327 2537 51166796 51167007 8.640000e-95 357
29 TraesCS2A01G569100 chr4D 97.596 208 5 0 2330 2537 483227297 483227090 8.640000e-95 357
30 TraesCS2A01G569100 chr4A 86.000 200 28 0 2093 2292 647339368 647339169 5.500000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G569100 chr2A 766993282 766995820 2538 True 4689.000000 4689 100.000000 1 2539 1 chr2A.!!$R1 2538
1 TraesCS2A01G569100 chr2D 642019746 642022284 2538 True 762.333333 1229 92.222667 557 2320 3 chr2D.!!$R2 1763
2 TraesCS2A01G569100 chr2D 642030311 642030840 529 True 630.000000 630 88.333000 1 531 1 chr2D.!!$R1 530
3 TraesCS2A01G569100 chr2D 642127325 642132800 5475 True 493.500000 1275 91.001000 3 1722 4 chr2D.!!$R3 1719
4 TraesCS2A01G569100 chr6D 34304708 34306028 1320 True 1194.000000 1194 83.175000 941 2291 1 chr6D.!!$R2 1350
5 TraesCS2A01G569100 chr6D 33304345 33305623 1278 True 558.000000 558 75.283000 994 2287 1 chr6D.!!$R1 1293
6 TraesCS2A01G569100 chr6D 34296385 34297648 1263 True 550.000000 830 85.974000 941 2291 2 chr6D.!!$R4 1350
7 TraesCS2A01G569100 chr6B 70570685 70571772 1087 True 736.000000 736 79.099000 818 1918 1 chr6B.!!$R2 1100
8 TraesCS2A01G569100 chr6B 69719175 69720089 914 True 372.000000 372 74.762000 994 1914 1 chr6B.!!$R1 920
9 TraesCS2A01G569100 chr6A 38460429 38461682 1253 True 568.000000 568 75.455000 988 2292 1 chr6A.!!$R5 1304
10 TraesCS2A01G569100 chr6A 38110938 38111512 574 True 472.000000 472 81.552000 1341 1918 1 chr6A.!!$R3 577
11 TraesCS2A01G569100 chr6A 38104180 38105049 869 True 411.000000 411 75.476000 1029 1917 1 chr6A.!!$R2 888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 362 0.396435 AACTGGCTGTCGTCCATTCA 59.604 50.0 0.0 0.0 32.37 2.57 F
811 4894 0.472471 AAACAGGAAGGCGGAAGACA 59.528 50.0 0.0 0.0 46.78 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1241 5350 0.103208 GACCAGCAGATAGTCCACGG 59.897 60.0 0.00 0.0 0.00 4.94 R
2492 7246 0.036765 AACGATAGCGCTTGTTGGGA 60.037 50.0 18.68 0.0 42.48 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 84 3.054166 TCGTCATGAAACTTACACGTGG 58.946 45.455 21.57 4.47 0.00 4.94
108 114 7.765695 ACACCAGATAGATGTTTGTTTCAAT 57.234 32.000 0.00 0.00 0.00 2.57
194 202 0.991920 ACCCATGTCCCAAGGTGTAG 59.008 55.000 0.00 0.00 0.00 2.74
255 362 0.396435 AACTGGCTGTCGTCCATTCA 59.604 50.000 0.00 0.00 32.37 2.57
333 443 2.945668 GGAAGTGTGCTATGGCTTTAGG 59.054 50.000 1.68 0.00 39.59 2.69
334 444 2.044123 AGTGTGCTATGGCTTTAGGC 57.956 50.000 1.68 0.00 39.59 3.93
345 455 2.947448 GCTTTAGGCCTTGGACAATG 57.053 50.000 12.58 1.73 34.27 2.82
346 456 2.171003 GCTTTAGGCCTTGGACAATGT 58.829 47.619 12.58 0.00 34.27 2.71
347 457 3.352648 GCTTTAGGCCTTGGACAATGTA 58.647 45.455 12.58 0.00 34.27 2.29
348 458 3.378427 GCTTTAGGCCTTGGACAATGTAG 59.622 47.826 12.58 0.00 34.27 2.74
349 459 4.589908 CTTTAGGCCTTGGACAATGTAGT 58.410 43.478 12.58 0.00 0.00 2.73
350 460 5.741011 CTTTAGGCCTTGGACAATGTAGTA 58.259 41.667 12.58 0.00 0.00 1.82
351 461 5.968676 TTAGGCCTTGGACAATGTAGTAT 57.031 39.130 12.58 0.00 0.00 2.12
401 511 5.567138 ACCTAATTTTTCTCAAGCATCGG 57.433 39.130 0.00 0.00 0.00 4.18
412 522 4.160439 TCTCAAGCATCGGTGATTAACTCT 59.840 41.667 0.00 0.00 30.97 3.24
416 526 7.722363 TCAAGCATCGGTGATTAACTCTATTA 58.278 34.615 0.00 0.00 30.97 0.98
419 529 8.958119 AGCATCGGTGATTAACTCTATTAAAA 57.042 30.769 0.00 0.00 0.00 1.52
420 530 9.046296 AGCATCGGTGATTAACTCTATTAAAAG 57.954 33.333 0.00 0.00 0.00 2.27
421 531 9.042008 GCATCGGTGATTAACTCTATTAAAAGA 57.958 33.333 0.00 0.00 0.00 2.52
459 569 6.426328 ACGTCTATCCTCTACAATAAGTACCG 59.574 42.308 0.00 0.00 0.00 4.02
477 587 3.482436 ACCGGTGCTTAAGAAACATTGA 58.518 40.909 6.12 0.00 0.00 2.57
480 591 5.010617 ACCGGTGCTTAAGAAACATTGATTT 59.989 36.000 6.12 0.00 0.00 2.17
507 3061 4.575885 TGTAAGCACCTCACAATAACTCC 58.424 43.478 0.00 0.00 0.00 3.85
516 3070 4.096984 CCTCACAATAACTCCAATGCTTCC 59.903 45.833 0.00 0.00 0.00 3.46
539 3093 7.955918 TCCTCTAGAAAACTTACCGTAAAAGT 58.044 34.615 0.00 0.00 38.82 2.66
540 3094 7.869429 TCCTCTAGAAAACTTACCGTAAAAGTG 59.131 37.037 0.00 0.00 37.26 3.16
541 3095 7.869429 CCTCTAGAAAACTTACCGTAAAAGTGA 59.131 37.037 0.00 0.00 37.26 3.41
542 3096 9.420551 CTCTAGAAAACTTACCGTAAAAGTGAT 57.579 33.333 0.00 0.00 37.26 3.06
543 3097 9.768662 TCTAGAAAACTTACCGTAAAAGTGATT 57.231 29.630 0.00 0.00 37.26 2.57
734 4579 3.251571 GGTTACGACTCACCATTCAGTC 58.748 50.000 0.00 0.00 36.45 3.51
743 4588 3.937706 CTCACCATTCAGTCACCATTCTC 59.062 47.826 0.00 0.00 0.00 2.87
811 4894 0.472471 AAACAGGAAGGCGGAAGACA 59.528 50.000 0.00 0.00 46.78 3.41
845 4928 1.668151 GCGGCGACTTTGGAGAAGT 60.668 57.895 12.98 0.00 0.00 3.01
858 4949 3.423154 GAAGTGGACTTGCCGGCG 61.423 66.667 23.90 11.34 40.66 6.46
880 4971 4.459089 GGTGAGGTGAGGCGAGGC 62.459 72.222 0.00 0.00 0.00 4.70
898 4989 3.760035 GAGGCGAGGCGAAGTGGA 61.760 66.667 0.00 0.00 0.00 4.02
1202 5311 4.394078 CGGCCTCGACGACGACAA 62.394 66.667 5.75 0.00 43.81 3.18
1203 5312 2.804090 GGCCTCGACGACGACAAC 60.804 66.667 5.75 0.00 43.81 3.32
1205 5314 2.552768 CCTCGACGACGACAACGA 59.447 61.111 5.75 6.46 43.81 3.85
1241 5350 0.470341 GCCCAGGACCTCCATAAGTC 59.530 60.000 0.00 0.00 38.89 3.01
1296 5405 3.945921 CAGACCTAGACACCGTTGAGATA 59.054 47.826 0.00 0.00 0.00 1.98
1320 5429 3.386768 TTCGACACTTTCCTGGAAGAG 57.613 47.619 9.42 11.98 34.07 2.85
1426 5886 4.546674 TCAATACCTCTGCCTAGATGACA 58.453 43.478 0.00 0.00 31.21 3.58
1622 6311 1.372087 CGCTCTGACTTGGATTGCCC 61.372 60.000 0.00 0.00 0.00 5.36
1650 6339 1.061546 TTTCTACTCCGGGCCTTGTT 58.938 50.000 0.84 0.00 0.00 2.83
1729 6428 4.220602 TGCTAGAGACTGCATTTGTCTACA 59.779 41.667 7.05 4.70 43.88 2.74
1796 6498 6.183360 GGTGTTTTCTGTGGAGCTAATGATAC 60.183 42.308 0.00 0.00 0.00 2.24
1856 6558 4.607293 ACAGTGATTGTGTGCTTCTAGA 57.393 40.909 0.00 0.00 38.99 2.43
1868 6570 5.751028 GTGTGCTTCTAGATGGTATCTCAAC 59.249 44.000 7.66 0.00 40.76 3.18
1944 6649 6.472887 CCACTTGTCTTTACCTCCTTTATGA 58.527 40.000 0.00 0.00 0.00 2.15
1956 6665 7.465900 ACCTCCTTTATGATATCCCTTTTCA 57.534 36.000 0.00 0.00 0.00 2.69
1996 6709 4.454728 TCATTGCTGGAAATAGGCAAAC 57.545 40.909 3.79 0.00 46.59 2.93
1997 6710 3.831333 TCATTGCTGGAAATAGGCAAACA 59.169 39.130 3.79 0.00 46.59 2.83
1998 6711 4.282957 TCATTGCTGGAAATAGGCAAACAA 59.717 37.500 3.79 0.00 46.59 2.83
1999 6712 4.679373 TTGCTGGAAATAGGCAAACAAA 57.321 36.364 0.00 0.00 41.96 2.83
2000 6713 4.679373 TGCTGGAAATAGGCAAACAAAA 57.321 36.364 0.00 0.00 32.79 2.44
2001 6714 5.028549 TGCTGGAAATAGGCAAACAAAAA 57.971 34.783 0.00 0.00 32.79 1.94
2027 6740 5.300411 ACTGATCTCATATGCATCACCAA 57.700 39.130 0.19 0.00 0.00 3.67
2085 6799 4.660789 TGATCTCATCTCGCATTCTCAA 57.339 40.909 0.00 0.00 0.00 3.02
2335 7089 9.649167 TCTTCTAACATAGGTTTAACTTACAGC 57.351 33.333 0.00 0.00 38.45 4.40
2336 7090 9.431887 CTTCTAACATAGGTTTAACTTACAGCA 57.568 33.333 0.00 0.00 38.45 4.41
2337 7091 9.781633 TTCTAACATAGGTTTAACTTACAGCAA 57.218 29.630 0.00 0.00 38.45 3.91
2338 7092 9.431887 TCTAACATAGGTTTAACTTACAGCAAG 57.568 33.333 0.00 0.00 38.45 4.01
2339 7093 9.431887 CTAACATAGGTTTAACTTACAGCAAGA 57.568 33.333 0.00 0.00 38.45 3.02
2340 7094 8.863872 AACATAGGTTTAACTTACAGCAAGAT 57.136 30.769 0.00 0.00 33.83 2.40
2341 7095 8.494016 ACATAGGTTTAACTTACAGCAAGATC 57.506 34.615 0.00 0.00 37.71 2.75
2342 7096 8.100791 ACATAGGTTTAACTTACAGCAAGATCA 58.899 33.333 0.00 0.00 37.71 2.92
2343 7097 8.946085 CATAGGTTTAACTTACAGCAAGATCAA 58.054 33.333 0.00 0.00 37.71 2.57
2344 7098 7.817418 AGGTTTAACTTACAGCAAGATCAAA 57.183 32.000 0.00 0.00 37.71 2.69
2345 7099 8.409358 AGGTTTAACTTACAGCAAGATCAAAT 57.591 30.769 0.00 0.00 37.71 2.32
2346 7100 9.515226 AGGTTTAACTTACAGCAAGATCAAATA 57.485 29.630 0.00 0.00 37.71 1.40
2353 7107 9.035607 ACTTACAGCAAGATCAAATAACTATCG 57.964 33.333 0.00 0.00 37.71 2.92
2354 7108 8.942338 TTACAGCAAGATCAAATAACTATCGT 57.058 30.769 0.00 0.00 0.00 3.73
2355 7109 7.470289 ACAGCAAGATCAAATAACTATCGTC 57.530 36.000 0.00 0.00 0.00 4.20
2356 7110 6.480320 ACAGCAAGATCAAATAACTATCGTCC 59.520 38.462 0.00 0.00 0.00 4.79
2357 7111 6.479990 CAGCAAGATCAAATAACTATCGTCCA 59.520 38.462 0.00 0.00 0.00 4.02
2358 7112 7.011389 CAGCAAGATCAAATAACTATCGTCCAA 59.989 37.037 0.00 0.00 0.00 3.53
2359 7113 7.225538 AGCAAGATCAAATAACTATCGTCCAAG 59.774 37.037 0.00 0.00 0.00 3.61
2360 7114 7.224753 GCAAGATCAAATAACTATCGTCCAAGA 59.775 37.037 0.00 0.00 0.00 3.02
2361 7115 9.098355 CAAGATCAAATAACTATCGTCCAAGAA 57.902 33.333 0.00 0.00 0.00 2.52
2362 7116 8.879342 AGATCAAATAACTATCGTCCAAGAAG 57.121 34.615 0.00 0.00 0.00 2.85
2363 7117 8.696374 AGATCAAATAACTATCGTCCAAGAAGA 58.304 33.333 0.00 0.00 0.00 2.87
2364 7118 9.482627 GATCAAATAACTATCGTCCAAGAAGAT 57.517 33.333 0.00 0.00 35.26 2.40
2365 7119 8.873215 TCAAATAACTATCGTCCAAGAAGATC 57.127 34.615 0.00 0.00 33.35 2.75
2366 7120 7.926555 TCAAATAACTATCGTCCAAGAAGATCC 59.073 37.037 0.00 0.00 33.35 3.36
2367 7121 7.604657 AATAACTATCGTCCAAGAAGATCCT 57.395 36.000 0.00 0.00 33.35 3.24
2368 7122 8.707796 AATAACTATCGTCCAAGAAGATCCTA 57.292 34.615 0.00 0.00 33.35 2.94
2369 7123 8.887264 ATAACTATCGTCCAAGAAGATCCTAT 57.113 34.615 0.00 0.00 33.35 2.57
2370 7124 9.976776 ATAACTATCGTCCAAGAAGATCCTATA 57.023 33.333 0.00 0.00 33.35 1.31
2371 7125 7.931578 ACTATCGTCCAAGAAGATCCTATAG 57.068 40.000 0.00 0.00 33.35 1.31
2372 7126 6.887545 ACTATCGTCCAAGAAGATCCTATAGG 59.112 42.308 13.07 13.07 33.35 2.57
2373 7127 5.063017 TCGTCCAAGAAGATCCTATAGGT 57.937 43.478 18.51 6.14 36.34 3.08
2374 7128 5.455872 TCGTCCAAGAAGATCCTATAGGTT 58.544 41.667 18.51 10.47 36.34 3.50
2375 7129 5.897824 TCGTCCAAGAAGATCCTATAGGTTT 59.102 40.000 18.51 11.34 36.34 3.27
2376 7130 7.064866 TCGTCCAAGAAGATCCTATAGGTTTA 58.935 38.462 18.51 0.00 36.34 2.01
2377 7131 7.562454 TCGTCCAAGAAGATCCTATAGGTTTAA 59.438 37.037 18.51 0.00 36.34 1.52
2378 7132 7.652507 CGTCCAAGAAGATCCTATAGGTTTAAC 59.347 40.741 18.51 8.83 36.34 2.01
2379 7133 8.706521 GTCCAAGAAGATCCTATAGGTTTAACT 58.293 37.037 18.51 10.75 36.34 2.24
2380 7134 9.280456 TCCAAGAAGATCCTATAGGTTTAACTT 57.720 33.333 18.51 15.50 36.34 2.66
2381 7135 9.331282 CCAAGAAGATCCTATAGGTTTAACTTG 57.669 37.037 25.18 25.18 35.47 3.16
2382 7136 9.331282 CAAGAAGATCCTATAGGTTTAACTTGG 57.669 37.037 24.83 15.49 34.01 3.61
2383 7137 7.510407 AGAAGATCCTATAGGTTTAACTTGGC 58.490 38.462 18.51 7.39 36.34 4.52
2384 7138 6.824958 AGATCCTATAGGTTTAACTTGGCA 57.175 37.500 18.51 0.00 36.34 4.92
2385 7139 6.592870 AGATCCTATAGGTTTAACTTGGCAC 58.407 40.000 18.51 0.00 36.34 5.01
2386 7140 5.765576 TCCTATAGGTTTAACTTGGCACA 57.234 39.130 18.51 0.00 36.34 4.57
2387 7141 6.129414 TCCTATAGGTTTAACTTGGCACAA 57.871 37.500 18.51 0.00 39.30 3.33
2388 7142 6.544650 TCCTATAGGTTTAACTTGGCACAAA 58.455 36.000 18.51 0.00 39.30 2.83
2389 7143 6.431852 TCCTATAGGTTTAACTTGGCACAAAC 59.568 38.462 18.51 0.00 39.30 2.93
2390 7144 7.909573 TCCTATAGGTTTAACTTGGCACAAACA 60.910 37.037 18.51 0.00 39.30 2.83
2402 7156 5.899120 TGGCACAAACACTAACTAAAACA 57.101 34.783 0.00 0.00 31.92 2.83
2403 7157 6.458232 TGGCACAAACACTAACTAAAACAT 57.542 33.333 0.00 0.00 31.92 2.71
2404 7158 7.569639 TGGCACAAACACTAACTAAAACATA 57.430 32.000 0.00 0.00 31.92 2.29
2405 7159 7.997482 TGGCACAAACACTAACTAAAACATAA 58.003 30.769 0.00 0.00 31.92 1.90
2406 7160 8.467598 TGGCACAAACACTAACTAAAACATAAA 58.532 29.630 0.00 0.00 31.92 1.40
2407 7161 9.303537 GGCACAAACACTAACTAAAACATAAAA 57.696 29.630 0.00 0.00 0.00 1.52
2423 7177 9.965824 AAAACATAAAAACACATCTAACCAGAG 57.034 29.630 0.00 0.00 33.22 3.35
2424 7178 7.687941 ACATAAAAACACATCTAACCAGAGG 57.312 36.000 0.00 0.00 38.56 3.69
2425 7179 6.151144 ACATAAAAACACATCTAACCAGAGGC 59.849 38.462 0.00 0.00 35.99 4.70
2426 7180 4.373156 AAAACACATCTAACCAGAGGCT 57.627 40.909 0.00 0.00 35.99 4.58
2427 7181 5.499004 AAAACACATCTAACCAGAGGCTA 57.501 39.130 0.00 0.00 35.99 3.93
2428 7182 4.744795 AACACATCTAACCAGAGGCTAG 57.255 45.455 0.00 0.00 35.99 3.42
2429 7183 3.982516 ACACATCTAACCAGAGGCTAGA 58.017 45.455 0.00 0.00 35.99 2.43
2430 7184 4.551671 ACACATCTAACCAGAGGCTAGAT 58.448 43.478 3.70 3.70 40.48 1.98
2431 7185 4.586841 ACACATCTAACCAGAGGCTAGATC 59.413 45.833 6.10 0.00 38.57 2.75
2432 7186 4.586421 CACATCTAACCAGAGGCTAGATCA 59.414 45.833 6.10 0.00 38.57 2.92
2433 7187 5.069648 CACATCTAACCAGAGGCTAGATCAA 59.930 44.000 6.10 0.00 38.57 2.57
2434 7188 5.663106 ACATCTAACCAGAGGCTAGATCAAA 59.337 40.000 6.10 0.00 38.57 2.69
2435 7189 5.860941 TCTAACCAGAGGCTAGATCAAAG 57.139 43.478 0.00 0.00 26.93 2.77
2436 7190 5.519808 TCTAACCAGAGGCTAGATCAAAGA 58.480 41.667 0.00 0.00 26.93 2.52
2437 7191 6.139671 TCTAACCAGAGGCTAGATCAAAGAT 58.860 40.000 0.00 0.00 26.93 2.40
2438 7192 5.707066 AACCAGAGGCTAGATCAAAGATT 57.293 39.130 0.00 0.00 0.00 2.40
2439 7193 5.707066 ACCAGAGGCTAGATCAAAGATTT 57.293 39.130 0.00 0.00 0.00 2.17
2440 7194 6.814954 ACCAGAGGCTAGATCAAAGATTTA 57.185 37.500 0.00 0.00 0.00 1.40
2441 7195 7.385894 ACCAGAGGCTAGATCAAAGATTTAT 57.614 36.000 0.00 0.00 0.00 1.40
2442 7196 7.810260 ACCAGAGGCTAGATCAAAGATTTATT 58.190 34.615 0.00 0.00 0.00 1.40
2443 7197 7.936301 ACCAGAGGCTAGATCAAAGATTTATTC 59.064 37.037 0.00 0.00 0.00 1.75
2444 7198 7.390162 CCAGAGGCTAGATCAAAGATTTATTCC 59.610 40.741 0.00 0.00 0.00 3.01
2445 7199 8.156165 CAGAGGCTAGATCAAAGATTTATTCCT 58.844 37.037 0.00 0.00 0.00 3.36
2446 7200 9.386122 AGAGGCTAGATCAAAGATTTATTCCTA 57.614 33.333 0.00 0.00 0.00 2.94
2456 7210 9.295825 TCAAAGATTTATTCCTAAACAGAAGCA 57.704 29.630 0.00 0.00 29.85 3.91
2457 7211 9.912634 CAAAGATTTATTCCTAAACAGAAGCAA 57.087 29.630 0.00 0.00 29.85 3.91
2466 7220 9.665719 ATTCCTAAACAGAAGCAAAAAGAAAAA 57.334 25.926 0.00 0.00 0.00 1.94
2492 7246 8.988546 AAACTAAAAATAAAATTGGGTTGCCT 57.011 26.923 0.00 0.00 0.00 4.75
2493 7247 8.615878 AACTAAAAATAAAATTGGGTTGCCTC 57.384 30.769 0.00 0.00 0.00 4.70
2494 7248 7.165485 ACTAAAAATAAAATTGGGTTGCCTCC 58.835 34.615 0.00 0.00 0.00 4.30
2504 7258 3.294493 TTGCCTCCCAACAAGCGC 61.294 61.111 0.00 0.00 0.00 5.92
2505 7259 3.790416 TTGCCTCCCAACAAGCGCT 62.790 57.895 2.64 2.64 0.00 5.92
2506 7260 2.046314 GCCTCCCAACAAGCGCTA 60.046 61.111 12.05 0.00 0.00 4.26
2507 7261 1.452108 GCCTCCCAACAAGCGCTAT 60.452 57.895 12.05 0.00 0.00 2.97
2508 7262 1.440145 GCCTCCCAACAAGCGCTATC 61.440 60.000 12.05 0.00 0.00 2.08
2509 7263 1.154205 CCTCCCAACAAGCGCTATCG 61.154 60.000 12.05 4.88 39.07 2.92
2510 7264 0.460284 CTCCCAACAAGCGCTATCGT 60.460 55.000 12.05 5.66 38.14 3.73
2511 7265 0.036765 TCCCAACAAGCGCTATCGTT 60.037 50.000 12.05 12.35 38.14 3.85
2512 7266 0.802494 CCCAACAAGCGCTATCGTTT 59.198 50.000 12.05 0.00 39.71 3.60
2513 7267 2.004017 CCCAACAAGCGCTATCGTTTA 58.996 47.619 12.05 0.00 37.02 2.01
2514 7268 2.417239 CCCAACAAGCGCTATCGTTTAA 59.583 45.455 12.05 0.00 37.02 1.52
2515 7269 3.413558 CCAACAAGCGCTATCGTTTAAC 58.586 45.455 12.05 0.00 37.02 2.01
2516 7270 3.081445 CAACAAGCGCTATCGTTTAACG 58.919 45.455 12.05 11.60 44.19 3.18
2518 7272 4.866301 GCGCTATCGTTTAACGCC 57.134 55.556 13.06 0.51 43.58 5.68
2519 7273 1.274770 GCGCTATCGTTTAACGCCC 59.725 57.895 13.06 0.17 43.58 6.13
2520 7274 1.149964 GCGCTATCGTTTAACGCCCT 61.150 55.000 13.06 2.74 43.58 5.19
2521 7275 1.283736 CGCTATCGTTTAACGCCCTT 58.716 50.000 13.06 0.49 42.21 3.95
2522 7276 2.462889 CGCTATCGTTTAACGCCCTTA 58.537 47.619 13.06 0.00 42.21 2.69
2523 7277 2.470257 CGCTATCGTTTAACGCCCTTAG 59.530 50.000 13.06 11.18 42.21 2.18
2524 7278 2.220363 GCTATCGTTTAACGCCCTTAGC 59.780 50.000 13.06 16.16 42.21 3.09
2525 7279 2.685850 ATCGTTTAACGCCCTTAGCT 57.314 45.000 13.06 0.00 42.21 3.32
2526 7280 3.806625 ATCGTTTAACGCCCTTAGCTA 57.193 42.857 13.06 0.00 42.21 3.32
2527 7281 3.155093 TCGTTTAACGCCCTTAGCTAG 57.845 47.619 13.06 0.00 42.21 3.42
2528 7282 2.159198 TCGTTTAACGCCCTTAGCTAGG 60.159 50.000 13.06 0.00 42.21 3.02
2529 7283 1.938577 GTTTAACGCCCTTAGCTAGGC 59.061 52.381 12.89 12.89 43.27 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 176 3.520862 GGGACATGGGTGCGCATG 61.521 66.667 15.91 22.17 36.00 4.06
169 177 3.582242 TTGGGACATGGGTGCGCAT 62.582 57.895 15.91 0.00 39.30 4.73
170 178 4.277009 TTGGGACATGGGTGCGCA 62.277 61.111 5.66 5.66 39.30 6.09
171 179 3.443045 CTTGGGACATGGGTGCGC 61.443 66.667 0.00 0.00 39.30 6.09
194 202 2.892374 AGCTGCCAACAAGTTCAAAAC 58.108 42.857 0.00 0.00 0.00 2.43
225 332 2.357637 GACAGCCAGTTAACAAAGCACA 59.642 45.455 8.61 0.00 0.00 4.57
230 337 2.215196 GGACGACAGCCAGTTAACAAA 58.785 47.619 8.61 0.00 0.00 2.83
237 344 0.396435 TTGAATGGACGACAGCCAGT 59.604 50.000 0.00 0.00 39.11 4.00
238 345 0.798776 GTTGAATGGACGACAGCCAG 59.201 55.000 0.00 0.00 39.11 4.85
312 422 2.945668 CCTAAAGCCATAGCACACTTCC 59.054 50.000 0.00 0.00 43.56 3.46
313 423 2.356069 GCCTAAAGCCATAGCACACTTC 59.644 50.000 0.00 0.00 43.56 3.01
333 443 3.545703 AGCATACTACATTGTCCAAGGC 58.454 45.455 0.00 0.00 0.00 4.35
334 444 5.760253 CCTAAGCATACTACATTGTCCAAGG 59.240 44.000 0.00 0.00 0.00 3.61
335 445 5.760253 CCCTAAGCATACTACATTGTCCAAG 59.240 44.000 0.00 0.00 0.00 3.61
336 446 5.427157 TCCCTAAGCATACTACATTGTCCAA 59.573 40.000 0.00 0.00 0.00 3.53
337 447 4.966168 TCCCTAAGCATACTACATTGTCCA 59.034 41.667 0.00 0.00 0.00 4.02
338 448 5.546621 TCCCTAAGCATACTACATTGTCC 57.453 43.478 0.00 0.00 0.00 4.02
339 449 5.992217 CCTTCCCTAAGCATACTACATTGTC 59.008 44.000 0.00 0.00 0.00 3.18
340 450 5.428783 ACCTTCCCTAAGCATACTACATTGT 59.571 40.000 0.00 0.00 0.00 2.71
341 451 5.760253 CACCTTCCCTAAGCATACTACATTG 59.240 44.000 0.00 0.00 0.00 2.82
342 452 5.687706 GCACCTTCCCTAAGCATACTACATT 60.688 44.000 0.00 0.00 0.00 2.71
343 453 4.202367 GCACCTTCCCTAAGCATACTACAT 60.202 45.833 0.00 0.00 0.00 2.29
344 454 3.134081 GCACCTTCCCTAAGCATACTACA 59.866 47.826 0.00 0.00 0.00 2.74
345 455 3.388350 AGCACCTTCCCTAAGCATACTAC 59.612 47.826 0.00 0.00 0.00 2.73
346 456 3.654273 AGCACCTTCCCTAAGCATACTA 58.346 45.455 0.00 0.00 0.00 1.82
347 457 2.482494 AGCACCTTCCCTAAGCATACT 58.518 47.619 0.00 0.00 0.00 2.12
348 458 3.283259 AAGCACCTTCCCTAAGCATAC 57.717 47.619 0.00 0.00 0.00 2.39
349 459 4.037927 ACTAAGCACCTTCCCTAAGCATA 58.962 43.478 0.00 0.00 0.00 3.14
350 460 2.846827 ACTAAGCACCTTCCCTAAGCAT 59.153 45.455 0.00 0.00 0.00 3.79
351 461 2.266279 ACTAAGCACCTTCCCTAAGCA 58.734 47.619 0.00 0.00 0.00 3.91
389 499 4.160439 AGAGTTAATCACCGATGCTTGAGA 59.840 41.667 0.00 0.00 0.00 3.27
419 529 9.968870 GAGGATAGACGTTTAATTAGACATTCT 57.031 33.333 6.91 8.95 0.00 2.40
420 530 9.968870 AGAGGATAGACGTTTAATTAGACATTC 57.031 33.333 6.91 2.69 0.00 2.67
434 544 6.426328 CGGTACTTATTGTAGAGGATAGACGT 59.574 42.308 0.00 0.00 0.00 4.34
436 546 6.714356 ACCGGTACTTATTGTAGAGGATAGAC 59.286 42.308 4.49 0.00 34.75 2.59
448 558 6.148150 TGTTTCTTAAGCACCGGTACTTATTG 59.852 38.462 24.60 19.77 0.00 1.90
457 567 4.701956 ATCAATGTTTCTTAAGCACCGG 57.298 40.909 0.00 0.00 0.00 5.28
496 607 4.946157 AGAGGAAGCATTGGAGTTATTGTG 59.054 41.667 0.00 0.00 0.00 3.33
501 3055 6.620877 TTTCTAGAGGAAGCATTGGAGTTA 57.379 37.500 0.00 0.00 35.16 2.24
507 3061 6.183360 CGGTAAGTTTTCTAGAGGAAGCATTG 60.183 42.308 0.00 0.00 35.16 2.82
516 3070 8.807667 TCACTTTTACGGTAAGTTTTCTAGAG 57.192 34.615 0.33 0.00 33.73 2.43
543 3097 9.158233 CCCTAAAATTTACAGACATCTCGTAAA 57.842 33.333 13.88 13.88 38.91 2.01
544 3098 8.533657 TCCCTAAAATTTACAGACATCTCGTAA 58.466 33.333 0.00 0.00 0.00 3.18
545 3099 8.070034 TCCCTAAAATTTACAGACATCTCGTA 57.930 34.615 0.00 0.00 0.00 3.43
546 3100 6.942976 TCCCTAAAATTTACAGACATCTCGT 58.057 36.000 0.00 0.00 0.00 4.18
549 3103 9.588096 AACTTTCCCTAAAATTTACAGACATCT 57.412 29.630 0.00 0.00 0.00 2.90
631 3185 9.012161 AGAGTAGATCCCGTAAACATAGAATAC 57.988 37.037 0.00 0.00 0.00 1.89
757 4840 2.862512 CTCAAGAAGCTGAGTCGACTC 58.137 52.381 33.76 33.76 43.15 3.36
785 4868 0.667993 CGCCTTCCTGTTTTGAAGCA 59.332 50.000 0.00 0.00 38.29 3.91
838 4921 1.376037 CCGGCAAGTCCACTTCTCC 60.376 63.158 0.00 0.00 33.11 3.71
858 4949 4.459089 GCCTCACCTCACCTCGCC 62.459 72.222 0.00 0.00 0.00 5.54
859 4950 4.803426 CGCCTCACCTCACCTCGC 62.803 72.222 0.00 0.00 0.00 5.03
860 4951 3.057547 CTCGCCTCACCTCACCTCG 62.058 68.421 0.00 0.00 0.00 4.63
861 4952 2.716017 CCTCGCCTCACCTCACCTC 61.716 68.421 0.00 0.00 0.00 3.85
862 4953 2.681778 CCTCGCCTCACCTCACCT 60.682 66.667 0.00 0.00 0.00 4.00
863 4954 4.459089 GCCTCGCCTCACCTCACC 62.459 72.222 0.00 0.00 0.00 4.02
864 4955 4.803426 CGCCTCGCCTCACCTCAC 62.803 72.222 0.00 0.00 0.00 3.51
866 4957 4.200283 CTCGCCTCGCCTCACCTC 62.200 72.222 0.00 0.00 0.00 3.85
898 4989 1.153745 GCGTCTGGATGCTTCTCGT 60.154 57.895 7.46 0.00 40.09 4.18
1202 5311 1.867919 CTGGACAGGCTTCTCGTCGT 61.868 60.000 0.00 0.00 0.00 4.34
1203 5312 1.153939 CTGGACAGGCTTCTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
1205 5314 3.382111 CCTGGACAGGCTTCTCGT 58.618 61.111 5.27 0.00 42.44 4.18
1241 5350 0.103208 GACCAGCAGATAGTCCACGG 59.897 60.000 0.00 0.00 0.00 4.94
1275 5384 2.581216 TCTCAACGGTGTCTAGGTCT 57.419 50.000 0.00 0.00 0.00 3.85
1296 5405 4.040461 TCTTCCAGGAAAGTGTCGAATCTT 59.960 41.667 2.72 0.00 0.00 2.40
1320 5429 5.280011 CCATAGGTTCACATAGGGTATGTCC 60.280 48.000 0.00 0.00 45.83 4.02
1426 5886 1.153745 GCCGAGAGACAAGACGCAT 60.154 57.895 0.00 0.00 0.00 4.73
1622 6311 2.545952 CCCGGAGTAGAAACATGGATCG 60.546 54.545 0.73 0.00 0.00 3.69
1650 6339 4.021456 TCAAACGCATCTAGTTCCAGAGAA 60.021 41.667 0.00 0.00 0.00 2.87
1746 6445 8.680001 CCAGATTCATAATTCAAACAGACATCA 58.320 33.333 0.00 0.00 0.00 3.07
1856 6558 5.045578 AGGTGTTTAGCAGTTGAGATACCAT 60.046 40.000 0.00 0.00 0.00 3.55
1868 6570 6.820656 AGATATCAACTTGAGGTGTTTAGCAG 59.179 38.462 5.32 0.00 0.00 4.24
1944 6649 5.513233 AGTGCAGAACATGAAAAGGGATAT 58.487 37.500 0.00 0.00 0.00 1.63
1956 6665 6.679638 GCAATGATGTTGATAGTGCAGAACAT 60.680 38.462 0.00 0.00 40.80 2.71
2001 6714 6.604396 TGGTGATGCATATGAGATCAGTTTTT 59.396 34.615 14.85 0.00 0.00 1.94
2012 6725 3.695556 CCAGTTGTTGGTGATGCATATGA 59.304 43.478 6.97 0.00 42.41 2.15
2027 6740 0.473886 AGCTCTACCACCCCAGTTGT 60.474 55.000 0.00 0.00 0.00 3.32
2041 6754 4.946478 ACTCTAAGAACACAACAGCTCT 57.054 40.909 0.00 0.00 0.00 4.09
2311 7065 9.781633 TTGCTGTAAGTTAAACCTATGTTAGAA 57.218 29.630 0.00 0.00 35.30 2.10
2320 7074 7.817418 TTTGATCTTGCTGTAAGTTAAACCT 57.183 32.000 5.41 0.00 37.65 3.50
2327 7081 9.035607 CGATAGTTATTTGATCTTGCTGTAAGT 57.964 33.333 5.41 0.00 37.65 2.24
2346 7100 7.394923 CCTATAGGATCTTCTTGGACGATAGTT 59.605 40.741 14.11 0.00 45.22 2.24
2348 7102 6.887545 ACCTATAGGATCTTCTTGGACGATAG 59.112 42.308 26.01 0.00 38.94 2.08
2349 7103 6.791371 ACCTATAGGATCTTCTTGGACGATA 58.209 40.000 26.01 0.00 38.94 2.92
2350 7104 5.646215 ACCTATAGGATCTTCTTGGACGAT 58.354 41.667 26.01 0.00 38.94 3.73
2351 7105 5.063017 ACCTATAGGATCTTCTTGGACGA 57.937 43.478 26.01 0.00 38.94 4.20
2352 7106 5.793030 AACCTATAGGATCTTCTTGGACG 57.207 43.478 26.01 0.00 38.94 4.79
2353 7107 8.706521 AGTTAAACCTATAGGATCTTCTTGGAC 58.293 37.037 26.01 9.75 38.94 4.02
2354 7108 8.855804 AGTTAAACCTATAGGATCTTCTTGGA 57.144 34.615 26.01 0.00 38.94 3.53
2355 7109 9.331282 CAAGTTAAACCTATAGGATCTTCTTGG 57.669 37.037 26.01 12.75 38.94 3.61
2356 7110 9.331282 CCAAGTTAAACCTATAGGATCTTCTTG 57.669 37.037 26.01 25.46 38.94 3.02
2357 7111 7.993758 GCCAAGTTAAACCTATAGGATCTTCTT 59.006 37.037 26.01 18.04 38.94 2.52
2358 7112 7.127339 TGCCAAGTTAAACCTATAGGATCTTCT 59.873 37.037 26.01 13.72 38.94 2.85
2359 7113 7.226918 GTGCCAAGTTAAACCTATAGGATCTTC 59.773 40.741 26.01 11.83 38.94 2.87
2360 7114 7.054751 GTGCCAAGTTAAACCTATAGGATCTT 58.945 38.462 26.01 16.14 38.94 2.40
2361 7115 6.157994 TGTGCCAAGTTAAACCTATAGGATCT 59.842 38.462 26.01 10.96 38.94 2.75
2362 7116 6.354130 TGTGCCAAGTTAAACCTATAGGATC 58.646 40.000 26.01 9.88 38.94 3.36
2363 7117 6.321821 TGTGCCAAGTTAAACCTATAGGAT 57.678 37.500 26.01 11.18 38.94 3.24
2364 7118 5.765576 TGTGCCAAGTTAAACCTATAGGA 57.234 39.130 26.01 0.00 38.94 2.94
2365 7119 6.207810 TGTTTGTGCCAAGTTAAACCTATAGG 59.792 38.462 17.73 17.73 42.17 2.57
2366 7120 7.040686 AGTGTTTGTGCCAAGTTAAACCTATAG 60.041 37.037 0.00 0.00 33.33 1.31
2367 7121 6.773685 AGTGTTTGTGCCAAGTTAAACCTATA 59.226 34.615 0.00 0.00 33.33 1.31
2368 7122 5.596772 AGTGTTTGTGCCAAGTTAAACCTAT 59.403 36.000 0.00 0.00 33.33 2.57
2369 7123 4.951094 AGTGTTTGTGCCAAGTTAAACCTA 59.049 37.500 0.00 0.00 33.33 3.08
2370 7124 3.767131 AGTGTTTGTGCCAAGTTAAACCT 59.233 39.130 0.00 0.00 33.33 3.50
2371 7125 4.118093 AGTGTTTGTGCCAAGTTAAACC 57.882 40.909 0.00 0.00 33.33 3.27
2372 7126 6.327154 AGTTAGTGTTTGTGCCAAGTTAAAC 58.673 36.000 0.00 0.00 34.51 2.01
2373 7127 6.518208 AGTTAGTGTTTGTGCCAAGTTAAA 57.482 33.333 0.00 0.00 0.00 1.52
2374 7128 7.627298 TTAGTTAGTGTTTGTGCCAAGTTAA 57.373 32.000 0.00 0.00 0.00 2.01
2375 7129 7.627298 TTTAGTTAGTGTTTGTGCCAAGTTA 57.373 32.000 0.00 0.00 0.00 2.24
2376 7130 6.518208 TTTAGTTAGTGTTTGTGCCAAGTT 57.482 33.333 0.00 0.00 0.00 2.66
2377 7131 6.071840 TGTTTTAGTTAGTGTTTGTGCCAAGT 60.072 34.615 0.00 0.00 0.00 3.16
2378 7132 6.326375 TGTTTTAGTTAGTGTTTGTGCCAAG 58.674 36.000 0.00 0.00 0.00 3.61
2379 7133 6.268825 TGTTTTAGTTAGTGTTTGTGCCAA 57.731 33.333 0.00 0.00 0.00 4.52
2380 7134 5.899120 TGTTTTAGTTAGTGTTTGTGCCA 57.101 34.783 0.00 0.00 0.00 4.92
2381 7135 8.859517 TTTATGTTTTAGTTAGTGTTTGTGCC 57.140 30.769 0.00 0.00 0.00 5.01
2397 7151 9.965824 CTCTGGTTAGATGTGTTTTTATGTTTT 57.034 29.630 0.00 0.00 31.21 2.43
2398 7152 8.576442 CCTCTGGTTAGATGTGTTTTTATGTTT 58.424 33.333 0.00 0.00 31.21 2.83
2399 7153 7.309194 GCCTCTGGTTAGATGTGTTTTTATGTT 60.309 37.037 0.00 0.00 31.21 2.71
2400 7154 6.151144 GCCTCTGGTTAGATGTGTTTTTATGT 59.849 38.462 0.00 0.00 31.21 2.29
2401 7155 6.375455 AGCCTCTGGTTAGATGTGTTTTTATG 59.625 38.462 0.00 0.00 31.21 1.90
2402 7156 6.485171 AGCCTCTGGTTAGATGTGTTTTTAT 58.515 36.000 0.00 0.00 31.21 1.40
2403 7157 5.876357 AGCCTCTGGTTAGATGTGTTTTTA 58.124 37.500 0.00 0.00 31.21 1.52
2404 7158 4.729868 AGCCTCTGGTTAGATGTGTTTTT 58.270 39.130 0.00 0.00 31.21 1.94
2405 7159 4.373156 AGCCTCTGGTTAGATGTGTTTT 57.627 40.909 0.00 0.00 31.21 2.43
2406 7160 4.777896 TCTAGCCTCTGGTTAGATGTGTTT 59.222 41.667 6.16 0.00 39.87 2.83
2407 7161 4.353777 TCTAGCCTCTGGTTAGATGTGTT 58.646 43.478 6.16 0.00 39.87 3.32
2408 7162 3.982516 TCTAGCCTCTGGTTAGATGTGT 58.017 45.455 6.16 0.00 39.87 3.72
2413 7167 5.519808 TCTTTGATCTAGCCTCTGGTTAGA 58.480 41.667 11.52 11.52 46.47 2.10
2414 7168 5.860941 TCTTTGATCTAGCCTCTGGTTAG 57.139 43.478 0.00 1.74 37.76 2.34
2415 7169 6.814954 AATCTTTGATCTAGCCTCTGGTTA 57.185 37.500 0.00 0.00 0.00 2.85
2416 7170 5.707066 AATCTTTGATCTAGCCTCTGGTT 57.293 39.130 0.00 0.00 0.00 3.67
2417 7171 5.707066 AAATCTTTGATCTAGCCTCTGGT 57.293 39.130 0.00 0.00 0.00 4.00
2418 7172 7.390162 GGAATAAATCTTTGATCTAGCCTCTGG 59.610 40.741 0.00 0.00 0.00 3.86
2419 7173 8.156165 AGGAATAAATCTTTGATCTAGCCTCTG 58.844 37.037 0.00 0.00 0.00 3.35
2420 7174 8.273923 AGGAATAAATCTTTGATCTAGCCTCT 57.726 34.615 0.00 0.00 0.00 3.69
2430 7184 9.295825 TGCTTCTGTTTAGGAATAAATCTTTGA 57.704 29.630 0.00 0.00 0.00 2.69
2431 7185 9.912634 TTGCTTCTGTTTAGGAATAAATCTTTG 57.087 29.630 0.00 0.00 0.00 2.77
2440 7194 9.665719 TTTTTCTTTTTGCTTCTGTTTAGGAAT 57.334 25.926 0.00 0.00 0.00 3.01
2466 7220 9.415008 AGGCAACCCAATTTTATTTTTAGTTTT 57.585 25.926 0.00 0.00 37.17 2.43
2467 7221 8.988546 AGGCAACCCAATTTTATTTTTAGTTT 57.011 26.923 0.00 0.00 37.17 2.66
2468 7222 7.663905 GGAGGCAACCCAATTTTATTTTTAGTT 59.336 33.333 0.00 0.00 37.17 2.24
2469 7223 7.165485 GGAGGCAACCCAATTTTATTTTTAGT 58.835 34.615 0.00 0.00 37.17 2.24
2470 7224 7.609760 GGAGGCAACCCAATTTTATTTTTAG 57.390 36.000 0.00 0.00 37.17 1.85
2485 7239 2.919494 CGCTTGTTGGGAGGCAACC 61.919 63.158 0.00 0.00 37.17 3.77
2486 7240 2.644992 CGCTTGTTGGGAGGCAAC 59.355 61.111 0.00 0.00 0.00 4.17
2487 7241 2.404566 TAGCGCTTGTTGGGAGGCAA 62.405 55.000 18.68 0.00 0.00 4.52
2488 7242 2.196997 ATAGCGCTTGTTGGGAGGCA 62.197 55.000 18.68 0.00 0.00 4.75
2489 7243 1.440145 GATAGCGCTTGTTGGGAGGC 61.440 60.000 18.68 0.00 0.00 4.70
2490 7244 1.154205 CGATAGCGCTTGTTGGGAGG 61.154 60.000 18.68 0.00 0.00 4.30
2491 7245 0.460284 ACGATAGCGCTTGTTGGGAG 60.460 55.000 18.68 1.34 42.48 4.30
2492 7246 0.036765 AACGATAGCGCTTGTTGGGA 60.037 50.000 18.68 0.00 42.48 4.37
2493 7247 0.802494 AAACGATAGCGCTTGTTGGG 59.198 50.000 18.68 1.82 42.48 4.12
2494 7248 3.413558 GTTAAACGATAGCGCTTGTTGG 58.586 45.455 18.68 5.13 42.48 3.77
2495 7249 3.081445 CGTTAAACGATAGCGCTTGTTG 58.919 45.455 18.68 11.82 46.05 3.33
2496 7250 2.473376 GCGTTAAACGATAGCGCTTGTT 60.473 45.455 18.68 15.85 46.05 2.83
2497 7251 1.060122 GCGTTAAACGATAGCGCTTGT 59.940 47.619 18.68 9.82 46.05 3.16
2498 7252 1.591394 GGCGTTAAACGATAGCGCTTG 60.591 52.381 18.68 9.06 46.05 4.01
2499 7253 0.648958 GGCGTTAAACGATAGCGCTT 59.351 50.000 18.68 2.89 46.05 4.68
2500 7254 1.149964 GGGCGTTAAACGATAGCGCT 61.150 55.000 17.26 17.26 46.05 5.92
2501 7255 1.149964 AGGGCGTTAAACGATAGCGC 61.150 55.000 19.47 19.47 46.05 5.92
2502 7256 1.283736 AAGGGCGTTAAACGATAGCG 58.716 50.000 0.00 0.00 46.05 4.26
2503 7257 2.220363 GCTAAGGGCGTTAAACGATAGC 59.780 50.000 0.00 0.00 46.05 2.97
2504 7258 3.714391 AGCTAAGGGCGTTAAACGATAG 58.286 45.455 0.00 0.00 46.05 2.08
2505 7259 3.806625 AGCTAAGGGCGTTAAACGATA 57.193 42.857 0.00 0.00 46.05 2.92
2506 7260 2.685850 AGCTAAGGGCGTTAAACGAT 57.314 45.000 0.00 0.00 46.05 3.73
2507 7261 2.159198 CCTAGCTAAGGGCGTTAAACGA 60.159 50.000 0.00 0.00 42.40 3.85
2508 7262 3.621222 GCCTAGCTAAGGGCGTTAAACG 61.621 54.545 8.15 0.00 46.65 3.60
2509 7263 1.938577 GCCTAGCTAAGGGCGTTAAAC 59.061 52.381 8.15 0.00 46.65 2.01
2510 7264 2.320745 GCCTAGCTAAGGGCGTTAAA 57.679 50.000 8.15 0.00 46.65 1.52
2516 7270 3.821748 ACTTTTATGCCTAGCTAAGGGC 58.178 45.455 15.44 15.44 46.65 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.