Multiple sequence alignment - TraesCS2A01G568800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G568800 chr2A 100.000 2294 0 0 1 2294 766925738 766923445 0.000000e+00 4237
1 TraesCS2A01G568800 chr2A 98.773 489 5 1 1806 2293 505833849 505833361 0.000000e+00 869
2 TraesCS2A01G568800 chr7D 89.915 1289 116 8 485 1764 613336415 613335132 0.000000e+00 1648
3 TraesCS2A01G568800 chr3D 88.156 1334 135 18 486 1806 155944884 155946207 0.000000e+00 1567
4 TraesCS2A01G568800 chr3D 90.950 221 18 2 256 475 180785673 180785454 1.720000e-76 296
5 TraesCS2A01G568800 chr3D 90.566 212 20 0 264 475 254474713 254474924 4.830000e-72 281
6 TraesCS2A01G568800 chr6A 88.119 1313 135 16 509 1806 52293904 52292598 0.000000e+00 1541
7 TraesCS2A01G568800 chr6A 87.237 1285 138 18 488 1755 52198842 52197567 0.000000e+00 1441
8 TraesCS2A01G568800 chr6A 98.969 485 5 0 1809 2293 431313039 431313523 0.000000e+00 869
9 TraesCS2A01G568800 chr6A 98.765 486 6 0 1808 2293 422304198 422303713 0.000000e+00 865
10 TraesCS2A01G568800 chr6A 98.374 492 7 1 1803 2293 435733016 435732525 0.000000e+00 863
11 TraesCS2A01G568800 chr4D 87.715 1335 143 13 488 1803 486071775 486073107 0.000000e+00 1537
12 TraesCS2A01G568800 chr3B 87.388 1340 134 21 486 1806 225804644 225803321 0.000000e+00 1506
13 TraesCS2A01G568800 chr3A 89.246 1181 115 9 587 1759 175234967 175236143 0.000000e+00 1467
14 TraesCS2A01G568800 chr3A 97.980 495 10 0 1799 2293 442784245 442784739 0.000000e+00 859
15 TraesCS2A01G568800 chr3A 78.771 179 32 3 580 755 613545811 613545986 5.180000e-22 115
16 TraesCS2A01G568800 chr7A 87.639 1262 125 20 498 1740 217392554 217391305 0.000000e+00 1437
17 TraesCS2A01G568800 chr7A 98.969 485 5 0 1809 2293 26350324 26350808 0.000000e+00 869
18 TraesCS2A01G568800 chr7A 97.410 502 11 2 1792 2293 164420313 164419814 0.000000e+00 854
19 TraesCS2A01G568800 chrUn 91.593 1023 76 8 787 1806 89700908 89701923 0.000000e+00 1404
20 TraesCS2A01G568800 chr1A 98.969 485 5 0 1809 2293 542835962 542836446 0.000000e+00 869
21 TraesCS2A01G568800 chr4B 89.420 690 59 6 1614 2293 67115894 67115209 0.000000e+00 857
22 TraesCS2A01G568800 chr4B 89.610 231 22 2 256 485 419787414 419787643 2.230000e-75 292
23 TraesCS2A01G568800 chr2D 91.469 211 17 1 262 472 340368762 340368971 2.880000e-74 289
24 TraesCS2A01G568800 chr2D 89.189 222 22 2 256 475 418508394 418508173 2.240000e-70 276
25 TraesCS2A01G568800 chr2B 90.045 221 21 1 256 475 362050161 362050381 3.730000e-73 285
26 TraesCS2A01G568800 chr7B 89.720 214 22 0 262 475 241436940 241436727 8.070000e-70 274
27 TraesCS2A01G568800 chr1D 89.140 221 23 1 256 475 116833048 116832828 8.070000e-70 274
28 TraesCS2A01G568800 chr5D 88.789 223 22 2 256 475 381977649 381977427 1.040000e-68 270


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G568800 chr2A 766923445 766925738 2293 True 4237 4237 100.000 1 2294 1 chr2A.!!$R2 2293
1 TraesCS2A01G568800 chr7D 613335132 613336415 1283 True 1648 1648 89.915 485 1764 1 chr7D.!!$R1 1279
2 TraesCS2A01G568800 chr3D 155944884 155946207 1323 False 1567 1567 88.156 486 1806 1 chr3D.!!$F1 1320
3 TraesCS2A01G568800 chr6A 52292598 52293904 1306 True 1541 1541 88.119 509 1806 1 chr6A.!!$R2 1297
4 TraesCS2A01G568800 chr6A 52197567 52198842 1275 True 1441 1441 87.237 488 1755 1 chr6A.!!$R1 1267
5 TraesCS2A01G568800 chr4D 486071775 486073107 1332 False 1537 1537 87.715 488 1803 1 chr4D.!!$F1 1315
6 TraesCS2A01G568800 chr3B 225803321 225804644 1323 True 1506 1506 87.388 486 1806 1 chr3B.!!$R1 1320
7 TraesCS2A01G568800 chr3A 175234967 175236143 1176 False 1467 1467 89.246 587 1759 1 chr3A.!!$F1 1172
8 TraesCS2A01G568800 chr7A 217391305 217392554 1249 True 1437 1437 87.639 498 1740 1 chr7A.!!$R2 1242
9 TraesCS2A01G568800 chrUn 89700908 89701923 1015 False 1404 1404 91.593 787 1806 1 chrUn.!!$F1 1019
10 TraesCS2A01G568800 chr4B 67115209 67115894 685 True 857 857 89.420 1614 2293 1 chr4B.!!$R1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 425 0.030638 CACCCAACGCAAACAAGAGG 59.969 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2171 2223 0.81804 ACACAAAGTGTTCCTCCGGC 60.818 55.0 0.0 0.0 45.08 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.702048 CCGGTGGCGGAGAAGGAA 61.702 66.667 0.00 0.00 0.00 3.36
18 19 2.584608 CGGTGGCGGAGAAGGAAT 59.415 61.111 0.00 0.00 0.00 3.01
19 20 1.521681 CGGTGGCGGAGAAGGAATC 60.522 63.158 0.00 0.00 0.00 2.52
20 21 1.153147 GGTGGCGGAGAAGGAATCC 60.153 63.158 0.00 0.00 0.00 3.01
21 22 1.627297 GGTGGCGGAGAAGGAATCCT 61.627 60.000 0.00 0.00 34.45 3.24
22 23 1.120530 GTGGCGGAGAAGGAATCCTA 58.879 55.000 0.46 0.00 34.45 2.94
23 24 1.069358 GTGGCGGAGAAGGAATCCTAG 59.931 57.143 0.46 0.00 34.45 3.02
24 25 1.343075 TGGCGGAGAAGGAATCCTAGT 60.343 52.381 0.46 0.00 34.45 2.57
25 26 1.069358 GGCGGAGAAGGAATCCTAGTG 59.931 57.143 0.46 0.00 34.45 2.74
26 27 1.539280 GCGGAGAAGGAATCCTAGTGC 60.539 57.143 0.46 0.00 34.45 4.40
27 28 1.069358 CGGAGAAGGAATCCTAGTGCC 59.931 57.143 0.46 1.26 34.45 5.01
28 29 1.418264 GGAGAAGGAATCCTAGTGCCC 59.582 57.143 0.46 0.00 33.77 5.36
29 30 1.418264 GAGAAGGAATCCTAGTGCCCC 59.582 57.143 0.46 0.00 31.13 5.80
30 31 1.010170 AGAAGGAATCCTAGTGCCCCT 59.990 52.381 0.46 0.00 31.13 4.79
31 32 2.250273 AGAAGGAATCCTAGTGCCCCTA 59.750 50.000 0.46 0.00 31.13 3.53
32 33 2.104669 AGGAATCCTAGTGCCCCTAC 57.895 55.000 0.00 0.00 28.47 3.18
33 34 1.057471 GGAATCCTAGTGCCCCTACC 58.943 60.000 0.00 0.00 0.00 3.18
34 35 1.057471 GAATCCTAGTGCCCCTACCC 58.943 60.000 0.00 0.00 0.00 3.69
35 36 0.401541 AATCCTAGTGCCCCTACCCC 60.402 60.000 0.00 0.00 0.00 4.95
36 37 2.674672 ATCCTAGTGCCCCTACCCCG 62.675 65.000 0.00 0.00 0.00 5.73
37 38 2.842936 CTAGTGCCCCTACCCCGG 60.843 72.222 0.00 0.00 0.00 5.73
41 42 4.872574 TGCCCCTACCCCGGCTAG 62.873 72.222 0.00 0.00 45.90 3.42
42 43 4.874533 GCCCCTACCCCGGCTAGT 62.875 72.222 0.00 0.00 42.21 2.57
43 44 2.937650 CCCCTACCCCGGCTAGTA 59.062 66.667 0.00 0.00 0.00 1.82
44 45 1.228800 CCCCTACCCCGGCTAGTAG 60.229 68.421 14.42 14.42 36.52 2.57
45 46 1.723128 CCCCTACCCCGGCTAGTAGA 61.723 65.000 20.19 0.00 38.60 2.59
46 47 0.408700 CCCTACCCCGGCTAGTAGAT 59.591 60.000 20.19 0.00 38.60 1.98
47 48 1.637553 CCCTACCCCGGCTAGTAGATA 59.362 57.143 20.19 0.00 38.60 1.98
48 49 2.356947 CCCTACCCCGGCTAGTAGATAG 60.357 59.091 20.19 8.38 38.60 2.08
49 50 2.356947 CCTACCCCGGCTAGTAGATAGG 60.357 59.091 20.19 3.18 38.60 2.57
50 51 1.156216 ACCCCGGCTAGTAGATAGGT 58.844 55.000 0.00 0.00 31.55 3.08
51 52 2.352371 ACCCCGGCTAGTAGATAGGTA 58.648 52.381 0.00 0.00 31.55 3.08
52 53 2.308275 ACCCCGGCTAGTAGATAGGTAG 59.692 54.545 0.00 0.00 31.55 3.18
53 54 2.308275 CCCCGGCTAGTAGATAGGTAGT 59.692 54.545 0.00 0.00 31.55 2.73
54 55 3.608796 CCCGGCTAGTAGATAGGTAGTC 58.391 54.545 0.00 0.00 31.55 2.59
55 56 3.263937 CCCGGCTAGTAGATAGGTAGTCT 59.736 52.174 0.00 0.00 31.55 3.24
56 57 4.263418 CCCGGCTAGTAGATAGGTAGTCTT 60.263 50.000 0.00 0.00 31.55 3.01
57 58 5.315348 CCGGCTAGTAGATAGGTAGTCTTT 58.685 45.833 0.00 0.00 31.55 2.52
58 59 5.412286 CCGGCTAGTAGATAGGTAGTCTTTC 59.588 48.000 0.00 0.00 31.55 2.62
59 60 5.996513 CGGCTAGTAGATAGGTAGTCTTTCA 59.003 44.000 0.00 0.00 31.55 2.69
60 61 6.485984 CGGCTAGTAGATAGGTAGTCTTTCAA 59.514 42.308 0.00 0.00 31.55 2.69
61 62 7.175293 CGGCTAGTAGATAGGTAGTCTTTCAAT 59.825 40.741 0.00 0.00 31.55 2.57
62 63 8.862085 GGCTAGTAGATAGGTAGTCTTTCAATT 58.138 37.037 0.00 0.00 31.55 2.32
63 64 9.902196 GCTAGTAGATAGGTAGTCTTTCAATTC 57.098 37.037 0.00 0.00 31.55 2.17
69 70 8.816894 AGATAGGTAGTCTTTCAATTCTTGTCA 58.183 33.333 0.00 0.00 0.00 3.58
70 71 9.606631 GATAGGTAGTCTTTCAATTCTTGTCAT 57.393 33.333 0.00 0.00 0.00 3.06
71 72 7.678947 AGGTAGTCTTTCAATTCTTGTCATG 57.321 36.000 0.00 0.00 0.00 3.07
72 73 6.656693 AGGTAGTCTTTCAATTCTTGTCATGG 59.343 38.462 0.00 0.00 0.00 3.66
73 74 6.655003 GGTAGTCTTTCAATTCTTGTCATGGA 59.345 38.462 0.00 0.00 0.00 3.41
74 75 6.566197 AGTCTTTCAATTCTTGTCATGGAC 57.434 37.500 0.00 0.00 0.00 4.02
75 76 5.474876 AGTCTTTCAATTCTTGTCATGGACC 59.525 40.000 0.00 0.00 0.00 4.46
76 77 5.241506 GTCTTTCAATTCTTGTCATGGACCA 59.758 40.000 0.00 0.00 0.00 4.02
77 78 5.832595 TCTTTCAATTCTTGTCATGGACCAA 59.167 36.000 0.00 0.00 0.00 3.67
78 79 6.323482 TCTTTCAATTCTTGTCATGGACCAAA 59.677 34.615 0.00 0.00 0.00 3.28
79 80 6.477053 TTCAATTCTTGTCATGGACCAAAA 57.523 33.333 0.00 0.00 0.00 2.44
80 81 5.841810 TCAATTCTTGTCATGGACCAAAAC 58.158 37.500 0.00 0.00 0.00 2.43
81 82 5.362143 TCAATTCTTGTCATGGACCAAAACA 59.638 36.000 0.00 2.96 0.00 2.83
82 83 4.647424 TTCTTGTCATGGACCAAAACAC 57.353 40.909 10.89 1.19 0.00 3.32
83 84 3.897239 TCTTGTCATGGACCAAAACACT 58.103 40.909 10.89 0.00 0.00 3.55
84 85 5.042463 TCTTGTCATGGACCAAAACACTA 57.958 39.130 10.89 1.80 0.00 2.74
85 86 4.819630 TCTTGTCATGGACCAAAACACTAC 59.180 41.667 10.89 0.00 0.00 2.73
86 87 3.482436 TGTCATGGACCAAAACACTACC 58.518 45.455 0.00 0.00 0.00 3.18
87 88 3.137544 TGTCATGGACCAAAACACTACCT 59.862 43.478 0.00 0.00 0.00 3.08
88 89 4.348461 TGTCATGGACCAAAACACTACCTA 59.652 41.667 0.00 0.00 0.00 3.08
89 90 5.013704 TGTCATGGACCAAAACACTACCTAT 59.986 40.000 0.00 0.00 0.00 2.57
90 91 5.585047 GTCATGGACCAAAACACTACCTATC 59.415 44.000 0.00 0.00 0.00 2.08
91 92 5.487488 TCATGGACCAAAACACTACCTATCT 59.513 40.000 0.00 0.00 0.00 1.98
92 93 6.670464 TCATGGACCAAAACACTACCTATCTA 59.330 38.462 0.00 0.00 0.00 1.98
93 94 7.347222 TCATGGACCAAAACACTACCTATCTAT 59.653 37.037 0.00 0.00 0.00 1.98
94 95 7.504926 TGGACCAAAACACTACCTATCTATT 57.495 36.000 0.00 0.00 0.00 1.73
95 96 8.612486 TGGACCAAAACACTACCTATCTATTA 57.388 34.615 0.00 0.00 0.00 0.98
96 97 8.701895 TGGACCAAAACACTACCTATCTATTAG 58.298 37.037 0.00 0.00 0.00 1.73
97 98 7.656542 GGACCAAAACACTACCTATCTATTAGC 59.343 40.741 0.00 0.00 0.00 3.09
98 99 7.506971 ACCAAAACACTACCTATCTATTAGCC 58.493 38.462 0.00 0.00 0.00 3.93
99 100 7.126726 ACCAAAACACTACCTATCTATTAGCCA 59.873 37.037 0.00 0.00 0.00 4.75
100 101 7.657761 CCAAAACACTACCTATCTATTAGCCAG 59.342 40.741 0.00 0.00 0.00 4.85
101 102 8.421784 CAAAACACTACCTATCTATTAGCCAGA 58.578 37.037 0.00 0.00 0.00 3.86
102 103 7.768807 AACACTACCTATCTATTAGCCAGAG 57.231 40.000 0.00 0.00 0.00 3.35
103 104 5.712917 ACACTACCTATCTATTAGCCAGAGC 59.287 44.000 0.00 0.00 40.32 4.09
104 105 5.126384 CACTACCTATCTATTAGCCAGAGCC 59.874 48.000 0.00 0.00 41.25 4.70
105 106 3.093057 ACCTATCTATTAGCCAGAGCCG 58.907 50.000 0.00 0.00 41.25 5.52
106 107 3.245300 ACCTATCTATTAGCCAGAGCCGA 60.245 47.826 0.00 0.00 41.25 5.54
107 108 3.380004 CCTATCTATTAGCCAGAGCCGAG 59.620 52.174 0.00 0.00 41.25 4.63
108 109 1.621992 TCTATTAGCCAGAGCCGAGG 58.378 55.000 0.00 0.00 41.25 4.63
119 120 3.890674 GCCGAGGCGTCAAGATTT 58.109 55.556 7.26 0.00 0.00 2.17
120 121 1.716172 GCCGAGGCGTCAAGATTTC 59.284 57.895 7.26 0.00 0.00 2.17
121 122 1.706287 GCCGAGGCGTCAAGATTTCC 61.706 60.000 7.26 0.00 0.00 3.13
122 123 1.090052 CCGAGGCGTCAAGATTTCCC 61.090 60.000 7.26 0.00 0.00 3.97
123 124 0.108138 CGAGGCGTCAAGATTTCCCT 60.108 55.000 7.26 0.00 0.00 4.20
124 125 1.676014 CGAGGCGTCAAGATTTCCCTT 60.676 52.381 7.26 0.00 0.00 3.95
125 126 2.437413 GAGGCGTCAAGATTTCCCTTT 58.563 47.619 0.52 0.00 0.00 3.11
126 127 2.420372 GAGGCGTCAAGATTTCCCTTTC 59.580 50.000 0.52 0.00 0.00 2.62
127 128 1.472878 GGCGTCAAGATTTCCCTTTCC 59.527 52.381 0.00 0.00 0.00 3.13
128 129 1.130561 GCGTCAAGATTTCCCTTTCCG 59.869 52.381 0.00 0.00 0.00 4.30
129 130 1.130561 CGTCAAGATTTCCCTTTCCGC 59.869 52.381 0.00 0.00 0.00 5.54
130 131 1.472878 GTCAAGATTTCCCTTTCCGCC 59.527 52.381 0.00 0.00 0.00 6.13
131 132 1.074727 TCAAGATTTCCCTTTCCGCCA 59.925 47.619 0.00 0.00 0.00 5.69
132 133 2.102578 CAAGATTTCCCTTTCCGCCAT 58.897 47.619 0.00 0.00 0.00 4.40
133 134 2.497273 CAAGATTTCCCTTTCCGCCATT 59.503 45.455 0.00 0.00 0.00 3.16
134 135 2.102578 AGATTTCCCTTTCCGCCATTG 58.897 47.619 0.00 0.00 0.00 2.82
135 136 1.824852 GATTTCCCTTTCCGCCATTGT 59.175 47.619 0.00 0.00 0.00 2.71
136 137 1.253100 TTTCCCTTTCCGCCATTGTC 58.747 50.000 0.00 0.00 0.00 3.18
137 138 0.610785 TTCCCTTTCCGCCATTGTCC 60.611 55.000 0.00 0.00 0.00 4.02
138 139 2.406616 CCCTTTCCGCCATTGTCCG 61.407 63.158 0.00 0.00 0.00 4.79
139 140 1.376683 CCTTTCCGCCATTGTCCGA 60.377 57.895 0.00 0.00 0.00 4.55
140 141 0.958382 CCTTTCCGCCATTGTCCGAA 60.958 55.000 0.00 0.00 0.00 4.30
141 142 0.447801 CTTTCCGCCATTGTCCGAAG 59.552 55.000 0.00 0.00 0.00 3.79
142 143 1.582610 TTTCCGCCATTGTCCGAAGC 61.583 55.000 0.00 0.00 0.00 3.86
143 144 3.864686 CCGCCATTGTCCGAAGCG 61.865 66.667 0.00 0.00 46.04 4.68
145 146 3.813596 GCCATTGTCCGAAGCGAT 58.186 55.556 0.00 0.00 0.00 4.58
146 147 1.643832 GCCATTGTCCGAAGCGATC 59.356 57.895 0.00 0.00 0.00 3.69
147 148 1.776034 GCCATTGTCCGAAGCGATCC 61.776 60.000 0.00 0.00 0.00 3.36
148 149 0.179073 CCATTGTCCGAAGCGATCCT 60.179 55.000 0.00 0.00 0.00 3.24
149 150 1.212616 CATTGTCCGAAGCGATCCTC 58.787 55.000 0.00 0.00 0.00 3.71
150 151 0.105039 ATTGTCCGAAGCGATCCTCC 59.895 55.000 0.00 0.00 0.00 4.30
151 152 0.970937 TTGTCCGAAGCGATCCTCCT 60.971 55.000 0.00 0.00 0.00 3.69
152 153 1.360911 GTCCGAAGCGATCCTCCTC 59.639 63.158 0.00 0.00 0.00 3.71
153 154 1.076995 TCCGAAGCGATCCTCCTCA 60.077 57.895 0.00 0.00 0.00 3.86
154 155 0.683179 TCCGAAGCGATCCTCCTCAA 60.683 55.000 0.00 0.00 0.00 3.02
155 156 0.249238 CCGAAGCGATCCTCCTCAAG 60.249 60.000 0.00 0.00 0.00 3.02
156 157 0.457851 CGAAGCGATCCTCCTCAAGT 59.542 55.000 0.00 0.00 0.00 3.16
157 158 1.134965 CGAAGCGATCCTCCTCAAGTT 60.135 52.381 0.00 0.00 0.00 2.66
158 159 2.675317 CGAAGCGATCCTCCTCAAGTTT 60.675 50.000 0.00 0.00 0.00 2.66
159 160 2.682155 AGCGATCCTCCTCAAGTTTC 57.318 50.000 0.00 0.00 0.00 2.78
160 161 1.134965 AGCGATCCTCCTCAAGTTTCG 60.135 52.381 0.00 0.00 33.15 3.46
161 162 1.927895 CGATCCTCCTCAAGTTTCGG 58.072 55.000 0.00 0.00 0.00 4.30
162 163 1.657822 GATCCTCCTCAAGTTTCGGC 58.342 55.000 0.00 0.00 0.00 5.54
163 164 0.984230 ATCCTCCTCAAGTTTCGGCA 59.016 50.000 0.00 0.00 0.00 5.69
164 165 0.034896 TCCTCCTCAAGTTTCGGCAC 59.965 55.000 0.00 0.00 0.00 5.01
165 166 0.035458 CCTCCTCAAGTTTCGGCACT 59.965 55.000 0.00 0.00 0.00 4.40
166 167 1.543429 CCTCCTCAAGTTTCGGCACTT 60.543 52.381 0.00 0.00 37.49 3.16
167 168 2.289444 CCTCCTCAAGTTTCGGCACTTA 60.289 50.000 0.49 0.00 35.10 2.24
168 169 3.600388 CTCCTCAAGTTTCGGCACTTAT 58.400 45.455 0.49 0.00 35.10 1.73
169 170 4.003648 CTCCTCAAGTTTCGGCACTTATT 58.996 43.478 0.49 0.00 35.10 1.40
170 171 4.000988 TCCTCAAGTTTCGGCACTTATTC 58.999 43.478 0.49 0.00 35.10 1.75
171 172 4.003648 CCTCAAGTTTCGGCACTTATTCT 58.996 43.478 0.49 0.00 35.10 2.40
172 173 4.093556 CCTCAAGTTTCGGCACTTATTCTC 59.906 45.833 0.49 0.00 35.10 2.87
173 174 4.000988 TCAAGTTTCGGCACTTATTCTCC 58.999 43.478 0.49 0.00 35.10 3.71
174 175 2.618053 AGTTTCGGCACTTATTCTCCG 58.382 47.619 0.00 0.00 42.96 4.63
177 178 1.471119 TCGGCACTTATTCTCCGAGT 58.529 50.000 0.00 0.00 44.99 4.18
178 179 1.822990 TCGGCACTTATTCTCCGAGTT 59.177 47.619 0.00 0.00 44.99 3.01
179 180 3.018856 TCGGCACTTATTCTCCGAGTTA 58.981 45.455 0.00 0.00 44.99 2.24
180 181 3.066342 TCGGCACTTATTCTCCGAGTTAG 59.934 47.826 0.00 0.00 44.99 2.34
181 182 3.181489 CGGCACTTATTCTCCGAGTTAGT 60.181 47.826 0.00 0.00 44.23 2.24
182 183 4.361420 GGCACTTATTCTCCGAGTTAGTC 58.639 47.826 0.00 0.00 0.00 2.59
183 184 4.098196 GGCACTTATTCTCCGAGTTAGTCT 59.902 45.833 0.00 0.00 0.00 3.24
184 185 5.394333 GGCACTTATTCTCCGAGTTAGTCTT 60.394 44.000 0.00 0.00 0.00 3.01
185 186 5.744819 GCACTTATTCTCCGAGTTAGTCTTC 59.255 44.000 0.00 0.00 0.00 2.87
186 187 6.267070 CACTTATTCTCCGAGTTAGTCTTCC 58.733 44.000 0.00 0.00 0.00 3.46
187 188 5.066246 ACTTATTCTCCGAGTTAGTCTTCCG 59.934 44.000 0.00 0.00 0.00 4.30
188 189 1.747709 TCTCCGAGTTAGTCTTCCGG 58.252 55.000 0.00 0.00 41.36 5.14
189 190 0.739561 CTCCGAGTTAGTCTTCCGGG 59.260 60.000 0.00 0.00 40.48 5.73
190 191 1.141234 CCGAGTTAGTCTTCCGGGC 59.859 63.158 0.00 0.00 36.81 6.13
191 192 1.601419 CCGAGTTAGTCTTCCGGGCA 61.601 60.000 0.00 0.00 36.81 5.36
192 193 0.460311 CGAGTTAGTCTTCCGGGCAT 59.540 55.000 0.00 0.00 0.00 4.40
193 194 1.536284 CGAGTTAGTCTTCCGGGCATC 60.536 57.143 0.00 0.00 0.00 3.91
194 195 1.480954 GAGTTAGTCTTCCGGGCATCA 59.519 52.381 0.00 0.00 0.00 3.07
195 196 1.906574 AGTTAGTCTTCCGGGCATCAA 59.093 47.619 0.00 0.00 0.00 2.57
196 197 2.505819 AGTTAGTCTTCCGGGCATCAAT 59.494 45.455 0.00 0.00 0.00 2.57
197 198 2.872858 GTTAGTCTTCCGGGCATCAATC 59.127 50.000 0.00 0.00 0.00 2.67
198 199 0.181350 AGTCTTCCGGGCATCAATCC 59.819 55.000 0.00 0.00 0.00 3.01
199 200 0.181350 GTCTTCCGGGCATCAATCCT 59.819 55.000 0.00 0.00 0.00 3.24
200 201 0.469917 TCTTCCGGGCATCAATCCTC 59.530 55.000 0.00 0.00 0.00 3.71
201 202 0.536006 CTTCCGGGCATCAATCCTCC 60.536 60.000 0.00 0.00 0.00 4.30
202 203 0.988145 TTCCGGGCATCAATCCTCCT 60.988 55.000 0.00 0.00 0.00 3.69
203 204 1.072159 CCGGGCATCAATCCTCCTC 59.928 63.158 0.00 0.00 0.00 3.71
204 205 1.699054 CCGGGCATCAATCCTCCTCA 61.699 60.000 0.00 0.00 0.00 3.86
205 206 0.181114 CGGGCATCAATCCTCCTCAA 59.819 55.000 0.00 0.00 0.00 3.02
206 207 1.813092 CGGGCATCAATCCTCCTCAAG 60.813 57.143 0.00 0.00 0.00 3.02
207 208 1.213926 GGGCATCAATCCTCCTCAAGT 59.786 52.381 0.00 0.00 0.00 3.16
208 209 2.357569 GGGCATCAATCCTCCTCAAGTT 60.358 50.000 0.00 0.00 0.00 2.66
209 210 3.359950 GGCATCAATCCTCCTCAAGTTT 58.640 45.455 0.00 0.00 0.00 2.66
210 211 3.129988 GGCATCAATCCTCCTCAAGTTTG 59.870 47.826 0.00 0.00 0.00 2.93
211 212 3.760684 GCATCAATCCTCCTCAAGTTTGT 59.239 43.478 0.00 0.00 0.00 2.83
212 213 4.142513 GCATCAATCCTCCTCAAGTTTGTC 60.143 45.833 0.00 0.00 0.00 3.18
213 214 4.982241 TCAATCCTCCTCAAGTTTGTCT 57.018 40.909 0.00 0.00 0.00 3.41
214 215 4.645535 TCAATCCTCCTCAAGTTTGTCTG 58.354 43.478 0.00 0.00 0.00 3.51
215 216 4.103153 TCAATCCTCCTCAAGTTTGTCTGT 59.897 41.667 0.00 0.00 0.00 3.41
216 217 4.713792 ATCCTCCTCAAGTTTGTCTGTT 57.286 40.909 0.00 0.00 0.00 3.16
217 218 5.825593 ATCCTCCTCAAGTTTGTCTGTTA 57.174 39.130 0.00 0.00 0.00 2.41
218 219 5.215252 TCCTCCTCAAGTTTGTCTGTTAG 57.785 43.478 0.00 0.00 0.00 2.34
219 220 4.654262 TCCTCCTCAAGTTTGTCTGTTAGT 59.346 41.667 0.00 0.00 0.00 2.24
220 221 5.836898 TCCTCCTCAAGTTTGTCTGTTAGTA 59.163 40.000 0.00 0.00 0.00 1.82
221 222 6.497259 TCCTCCTCAAGTTTGTCTGTTAGTAT 59.503 38.462 0.00 0.00 0.00 2.12
222 223 6.591834 CCTCCTCAAGTTTGTCTGTTAGTATG 59.408 42.308 0.00 0.00 0.00 2.39
223 224 7.297936 TCCTCAAGTTTGTCTGTTAGTATGA 57.702 36.000 0.00 0.00 0.00 2.15
224 225 7.732025 TCCTCAAGTTTGTCTGTTAGTATGAA 58.268 34.615 0.00 0.00 0.00 2.57
225 226 8.375506 TCCTCAAGTTTGTCTGTTAGTATGAAT 58.624 33.333 0.00 0.00 0.00 2.57
226 227 9.003658 CCTCAAGTTTGTCTGTTAGTATGAATT 57.996 33.333 0.00 0.00 0.00 2.17
239 240 9.998106 TGTTAGTATGAATTATAAAGAGCTCCC 57.002 33.333 10.93 0.00 0.00 4.30
240 241 9.141400 GTTAGTATGAATTATAAAGAGCTCCCG 57.859 37.037 10.93 0.00 0.00 5.14
241 242 7.304497 AGTATGAATTATAAAGAGCTCCCGT 57.696 36.000 10.93 0.00 0.00 5.28
242 243 7.155328 AGTATGAATTATAAAGAGCTCCCGTG 58.845 38.462 10.93 0.00 0.00 4.94
243 244 5.353394 TGAATTATAAAGAGCTCCCGTGT 57.647 39.130 10.93 0.00 0.00 4.49
244 245 6.474140 TGAATTATAAAGAGCTCCCGTGTA 57.526 37.500 10.93 0.00 0.00 2.90
245 246 6.513180 TGAATTATAAAGAGCTCCCGTGTAG 58.487 40.000 10.93 0.00 0.00 2.74
246 247 6.322969 TGAATTATAAAGAGCTCCCGTGTAGA 59.677 38.462 10.93 0.00 0.00 2.59
247 248 6.919775 ATTATAAAGAGCTCCCGTGTAGAT 57.080 37.500 10.93 0.00 0.00 1.98
248 249 6.726490 TTATAAAGAGCTCCCGTGTAGATT 57.274 37.500 10.93 0.00 0.00 2.40
249 250 3.528597 AAAGAGCTCCCGTGTAGATTC 57.471 47.619 10.93 0.00 0.00 2.52
250 251 1.404843 AGAGCTCCCGTGTAGATTCC 58.595 55.000 10.93 0.00 0.00 3.01
251 252 1.063567 AGAGCTCCCGTGTAGATTCCT 60.064 52.381 10.93 0.00 0.00 3.36
252 253 1.067821 GAGCTCCCGTGTAGATTCCTG 59.932 57.143 0.87 0.00 0.00 3.86
253 254 0.530870 GCTCCCGTGTAGATTCCTGC 60.531 60.000 0.00 0.00 0.00 4.85
254 255 1.115467 CTCCCGTGTAGATTCCTGCT 58.885 55.000 0.00 0.00 0.00 4.24
255 256 2.307768 CTCCCGTGTAGATTCCTGCTA 58.692 52.381 0.00 0.00 0.00 3.49
256 257 2.294791 CTCCCGTGTAGATTCCTGCTAG 59.705 54.545 0.00 0.00 0.00 3.42
257 258 1.269831 CCCGTGTAGATTCCTGCTAGC 60.270 57.143 8.10 8.10 0.00 3.42
258 259 1.683917 CCGTGTAGATTCCTGCTAGCT 59.316 52.381 17.23 0.00 0.00 3.32
259 260 2.287909 CCGTGTAGATTCCTGCTAGCTC 60.288 54.545 17.23 4.43 0.00 4.09
260 261 2.621055 CGTGTAGATTCCTGCTAGCTCT 59.379 50.000 17.23 12.19 0.00 4.09
261 262 3.067461 CGTGTAGATTCCTGCTAGCTCTT 59.933 47.826 17.23 0.00 0.00 2.85
262 263 4.440802 CGTGTAGATTCCTGCTAGCTCTTT 60.441 45.833 17.23 0.00 0.00 2.52
263 264 4.808364 GTGTAGATTCCTGCTAGCTCTTTG 59.192 45.833 17.23 0.00 0.00 2.77
264 265 3.557228 AGATTCCTGCTAGCTCTTTGG 57.443 47.619 17.23 10.11 0.00 3.28
265 266 2.172293 AGATTCCTGCTAGCTCTTTGGG 59.828 50.000 17.23 8.40 0.00 4.12
266 267 1.656587 TTCCTGCTAGCTCTTTGGGA 58.343 50.000 17.23 10.46 0.00 4.37
267 268 1.885049 TCCTGCTAGCTCTTTGGGAT 58.115 50.000 17.23 0.00 0.00 3.85
268 269 2.200081 TCCTGCTAGCTCTTTGGGATT 58.800 47.619 17.23 0.00 0.00 3.01
269 270 2.578021 TCCTGCTAGCTCTTTGGGATTT 59.422 45.455 17.23 0.00 0.00 2.17
270 271 2.948315 CCTGCTAGCTCTTTGGGATTTC 59.052 50.000 17.23 0.00 0.00 2.17
271 272 2.948315 CTGCTAGCTCTTTGGGATTTCC 59.052 50.000 17.23 0.00 0.00 3.13
284 285 3.836365 GGATTTCCCTGAAGAGGAGAG 57.164 52.381 0.00 0.00 42.93 3.20
285 286 2.437651 GGATTTCCCTGAAGAGGAGAGG 59.562 54.545 0.00 0.00 42.93 3.69
286 287 3.379452 GATTTCCCTGAAGAGGAGAGGA 58.621 50.000 0.00 0.00 42.93 3.71
287 288 3.498614 TTTCCCTGAAGAGGAGAGGAT 57.501 47.619 0.00 0.00 42.93 3.24
288 289 2.468301 TCCCTGAAGAGGAGAGGATG 57.532 55.000 0.00 0.00 42.93 3.51
289 290 1.933051 TCCCTGAAGAGGAGAGGATGA 59.067 52.381 0.00 0.00 42.93 2.92
290 291 2.521841 TCCCTGAAGAGGAGAGGATGAT 59.478 50.000 0.00 0.00 42.93 2.45
291 292 2.633967 CCCTGAAGAGGAGAGGATGATG 59.366 54.545 0.00 0.00 42.93 3.07
292 293 2.037511 CCTGAAGAGGAGAGGATGATGC 59.962 54.545 0.00 0.00 42.93 3.91
293 294 2.699321 CTGAAGAGGAGAGGATGATGCA 59.301 50.000 0.00 0.00 0.00 3.96
294 295 2.433604 TGAAGAGGAGAGGATGATGCAC 59.566 50.000 0.00 0.00 0.00 4.57
295 296 2.475339 AGAGGAGAGGATGATGCACT 57.525 50.000 0.00 0.00 0.00 4.40
296 297 3.609256 AGAGGAGAGGATGATGCACTA 57.391 47.619 0.00 0.00 0.00 2.74
297 298 3.230134 AGAGGAGAGGATGATGCACTAC 58.770 50.000 0.00 0.00 0.00 2.73
298 299 2.961741 GAGGAGAGGATGATGCACTACA 59.038 50.000 0.00 0.00 0.00 2.74
299 300 2.964464 AGGAGAGGATGATGCACTACAG 59.036 50.000 0.00 0.00 0.00 2.74
300 301 2.697751 GGAGAGGATGATGCACTACAGT 59.302 50.000 0.00 0.00 0.00 3.55
301 302 3.891977 GGAGAGGATGATGCACTACAGTA 59.108 47.826 0.00 0.00 0.00 2.74
302 303 4.022416 GGAGAGGATGATGCACTACAGTAG 60.022 50.000 6.00 6.00 0.00 2.57
303 304 4.797743 AGAGGATGATGCACTACAGTAGA 58.202 43.478 14.94 0.00 0.00 2.59
304 305 4.826733 AGAGGATGATGCACTACAGTAGAG 59.173 45.833 14.94 7.63 0.00 2.43
305 306 4.797743 AGGATGATGCACTACAGTAGAGA 58.202 43.478 14.94 0.00 0.00 3.10
306 307 5.392995 AGGATGATGCACTACAGTAGAGAT 58.607 41.667 14.94 2.91 0.00 2.75
307 308 6.547402 AGGATGATGCACTACAGTAGAGATA 58.453 40.000 14.94 0.22 0.00 1.98
308 309 7.007116 AGGATGATGCACTACAGTAGAGATAA 58.993 38.462 14.94 0.00 0.00 1.75
309 310 7.176515 AGGATGATGCACTACAGTAGAGATAAG 59.823 40.741 14.94 0.00 0.00 1.73
310 311 6.078202 TGATGCACTACAGTAGAGATAAGC 57.922 41.667 14.94 8.32 0.00 3.09
311 312 5.594317 TGATGCACTACAGTAGAGATAAGCA 59.406 40.000 14.94 12.90 0.00 3.91
312 313 6.266330 TGATGCACTACAGTAGAGATAAGCAT 59.734 38.462 14.94 16.28 41.16 3.79
313 314 6.471233 TGCACTACAGTAGAGATAAGCATT 57.529 37.500 14.94 0.00 0.00 3.56
314 315 6.878317 TGCACTACAGTAGAGATAAGCATTT 58.122 36.000 14.94 0.00 0.00 2.32
315 316 6.980978 TGCACTACAGTAGAGATAAGCATTTC 59.019 38.462 14.94 0.00 0.00 2.17
316 317 7.147828 TGCACTACAGTAGAGATAAGCATTTCT 60.148 37.037 14.94 0.00 31.01 2.52
317 318 7.381139 GCACTACAGTAGAGATAAGCATTTCTC 59.619 40.741 14.94 1.67 38.93 2.87
319 320 8.846211 ACTACAGTAGAGATAAGCATTTCTCTC 58.154 37.037 14.94 4.48 44.12 3.20
320 321 7.652524 ACAGTAGAGATAAGCATTTCTCTCA 57.347 36.000 14.01 1.34 44.12 3.27
321 322 7.715657 ACAGTAGAGATAAGCATTTCTCTCAG 58.284 38.462 14.01 8.83 44.12 3.35
322 323 7.341769 ACAGTAGAGATAAGCATTTCTCTCAGT 59.658 37.037 14.01 9.33 44.12 3.41
323 324 7.862372 CAGTAGAGATAAGCATTTCTCTCAGTC 59.138 40.741 14.01 5.78 44.12 3.51
324 325 6.788598 AGAGATAAGCATTTCTCTCAGTCA 57.211 37.500 6.15 0.00 44.12 3.41
325 326 7.180322 AGAGATAAGCATTTCTCTCAGTCAA 57.820 36.000 6.15 0.00 44.12 3.18
326 327 7.267128 AGAGATAAGCATTTCTCTCAGTCAAG 58.733 38.462 6.15 0.00 44.12 3.02
327 328 7.123997 AGAGATAAGCATTTCTCTCAGTCAAGA 59.876 37.037 6.15 0.00 44.12 3.02
328 329 7.619050 AGATAAGCATTTCTCTCAGTCAAGAA 58.381 34.615 0.00 0.00 0.00 2.52
329 330 5.938438 AAGCATTTCTCTCAGTCAAGAAC 57.062 39.130 0.00 0.00 31.46 3.01
330 331 5.226194 AGCATTTCTCTCAGTCAAGAACT 57.774 39.130 0.00 0.00 39.44 3.01
331 332 6.352016 AGCATTTCTCTCAGTCAAGAACTA 57.648 37.500 0.00 0.00 36.07 2.24
332 333 6.763355 AGCATTTCTCTCAGTCAAGAACTAA 58.237 36.000 0.00 0.00 36.07 2.24
333 334 6.873076 AGCATTTCTCTCAGTCAAGAACTAAG 59.127 38.462 0.00 0.00 36.07 2.18
334 335 6.091986 GCATTTCTCTCAGTCAAGAACTAAGG 59.908 42.308 0.00 0.00 36.07 2.69
335 336 6.732896 TTTCTCTCAGTCAAGAACTAAGGT 57.267 37.500 0.00 0.00 36.07 3.50
336 337 6.732896 TTCTCTCAGTCAAGAACTAAGGTT 57.267 37.500 0.00 0.00 36.07 3.50
337 338 7.834881 TTCTCTCAGTCAAGAACTAAGGTTA 57.165 36.000 0.00 0.00 36.07 2.85
338 339 7.216973 TCTCTCAGTCAAGAACTAAGGTTAC 57.783 40.000 0.00 0.00 36.07 2.50
339 340 6.208994 TCTCTCAGTCAAGAACTAAGGTTACC 59.791 42.308 0.00 0.00 36.07 2.85
340 341 5.836898 TCTCAGTCAAGAACTAAGGTTACCA 59.163 40.000 3.51 0.00 36.07 3.25
341 342 6.325545 TCTCAGTCAAGAACTAAGGTTACCAA 59.674 38.462 3.51 0.00 36.07 3.67
342 343 7.016268 TCTCAGTCAAGAACTAAGGTTACCAAT 59.984 37.037 3.51 0.00 36.07 3.16
343 344 7.159372 TCAGTCAAGAACTAAGGTTACCAATC 58.841 38.462 3.51 0.00 36.07 2.67
344 345 6.371825 CAGTCAAGAACTAAGGTTACCAATCC 59.628 42.308 3.51 0.00 36.07 3.01
345 346 6.043938 AGTCAAGAACTAAGGTTACCAATCCA 59.956 38.462 3.51 0.00 36.07 3.41
346 347 6.371825 GTCAAGAACTAAGGTTACCAATCCAG 59.628 42.308 3.51 0.00 35.58 3.86
347 348 6.043938 TCAAGAACTAAGGTTACCAATCCAGT 59.956 38.462 3.51 0.00 35.58 4.00
348 349 6.449830 AGAACTAAGGTTACCAATCCAGTT 57.550 37.500 3.51 5.12 35.58 3.16
349 350 6.238648 AGAACTAAGGTTACCAATCCAGTTG 58.761 40.000 3.51 0.00 35.58 3.16
351 352 6.746043 GAACTAAGGTTACCAATCCAGTTGGA 60.746 42.308 13.34 2.85 46.58 3.53
352 353 8.490110 GAACTAAGGTTACCAATCCAGTTGGAG 61.490 44.444 13.34 1.69 46.58 3.86
362 363 3.855255 TCCAGTTGGAGAATCACACAA 57.145 42.857 0.00 0.00 39.78 3.33
363 364 4.163441 TCCAGTTGGAGAATCACACAAA 57.837 40.909 0.00 0.00 39.78 2.83
364 365 4.136796 TCCAGTTGGAGAATCACACAAAG 58.863 43.478 0.00 0.00 39.78 2.77
365 366 3.304928 CCAGTTGGAGAATCACACAAAGC 60.305 47.826 0.00 0.00 36.25 3.51
366 367 2.887152 AGTTGGAGAATCACACAAAGCC 59.113 45.455 0.00 0.00 36.25 4.35
367 368 2.887152 GTTGGAGAATCACACAAAGCCT 59.113 45.455 0.00 0.00 36.25 4.58
368 369 2.783135 TGGAGAATCACACAAAGCCTC 58.217 47.619 0.00 0.00 36.25 4.70
369 370 2.106338 TGGAGAATCACACAAAGCCTCA 59.894 45.455 0.00 0.00 36.25 3.86
370 371 3.245016 TGGAGAATCACACAAAGCCTCAT 60.245 43.478 0.00 0.00 36.25 2.90
371 372 3.128242 GGAGAATCACACAAAGCCTCATG 59.872 47.826 0.00 0.00 36.25 3.07
372 373 4.005650 GAGAATCACACAAAGCCTCATGA 58.994 43.478 0.00 0.00 33.17 3.07
373 374 4.401022 AGAATCACACAAAGCCTCATGAA 58.599 39.130 0.00 0.00 0.00 2.57
374 375 4.217118 AGAATCACACAAAGCCTCATGAAC 59.783 41.667 0.00 0.00 0.00 3.18
375 376 2.929641 TCACACAAAGCCTCATGAACA 58.070 42.857 0.00 0.00 0.00 3.18
376 377 3.286353 TCACACAAAGCCTCATGAACAA 58.714 40.909 0.00 0.00 0.00 2.83
377 378 3.066621 TCACACAAAGCCTCATGAACAAC 59.933 43.478 0.00 0.00 0.00 3.32
378 379 3.023119 ACACAAAGCCTCATGAACAACA 58.977 40.909 0.00 0.00 0.00 3.33
379 380 3.181487 ACACAAAGCCTCATGAACAACAC 60.181 43.478 0.00 0.00 0.00 3.32
380 381 3.067180 CACAAAGCCTCATGAACAACACT 59.933 43.478 0.00 0.00 0.00 3.55
381 382 3.701040 ACAAAGCCTCATGAACAACACTT 59.299 39.130 0.00 0.00 0.00 3.16
382 383 3.996150 AAGCCTCATGAACAACACTTG 57.004 42.857 0.00 0.00 0.00 3.16
383 384 1.610522 AGCCTCATGAACAACACTTGC 59.389 47.619 0.00 0.00 0.00 4.01
384 385 1.337703 GCCTCATGAACAACACTTGCA 59.662 47.619 0.00 0.00 0.00 4.08
385 386 2.859806 GCCTCATGAACAACACTTGCAC 60.860 50.000 0.00 0.00 0.00 4.57
386 387 2.358582 CCTCATGAACAACACTTGCACA 59.641 45.455 0.00 0.00 0.00 4.57
387 388 3.365832 CTCATGAACAACACTTGCACAC 58.634 45.455 0.00 0.00 0.00 3.82
388 389 2.751806 TCATGAACAACACTTGCACACA 59.248 40.909 0.00 0.00 0.00 3.72
389 390 2.627863 TGAACAACACTTGCACACAC 57.372 45.000 0.00 0.00 0.00 3.82
390 391 1.882623 TGAACAACACTTGCACACACA 59.117 42.857 0.00 0.00 0.00 3.72
391 392 2.294512 TGAACAACACTTGCACACACAA 59.705 40.909 0.00 0.00 0.00 3.33
392 393 3.243535 TGAACAACACTTGCACACACAAA 60.244 39.130 0.00 0.00 0.00 2.83
393 394 3.377346 ACAACACTTGCACACACAAAA 57.623 38.095 0.00 0.00 0.00 2.44
394 395 3.316283 ACAACACTTGCACACACAAAAG 58.684 40.909 0.00 0.00 0.00 2.27
395 396 1.994916 ACACTTGCACACACAAAAGC 58.005 45.000 0.00 0.00 0.00 3.51
396 397 1.271934 ACACTTGCACACACAAAAGCA 59.728 42.857 0.00 0.00 34.79 3.91
397 398 2.288702 ACACTTGCACACACAAAAGCAA 60.289 40.909 0.00 0.00 43.90 3.91
398 399 2.735663 CACTTGCACACACAAAAGCAAA 59.264 40.909 0.00 0.00 45.18 3.68
399 400 3.371591 CACTTGCACACACAAAAGCAAAT 59.628 39.130 0.00 0.00 45.18 2.32
400 401 4.565962 CACTTGCACACACAAAAGCAAATA 59.434 37.500 0.00 0.00 45.18 1.40
401 402 4.566360 ACTTGCACACACAAAAGCAAATAC 59.434 37.500 0.00 0.00 45.18 1.89
402 403 4.383850 TGCACACACAAAAGCAAATACT 57.616 36.364 0.00 0.00 33.48 2.12
403 404 4.753233 TGCACACACAAAAGCAAATACTT 58.247 34.783 0.00 0.00 33.48 2.24
404 405 4.565962 TGCACACACAAAAGCAAATACTTG 59.434 37.500 0.00 0.00 33.48 3.16
414 415 1.696988 CAAATACTTGCACCCAACGC 58.303 50.000 0.00 0.00 0.00 4.84
415 416 1.000827 CAAATACTTGCACCCAACGCA 60.001 47.619 0.00 0.00 37.68 5.24
416 417 1.323412 AATACTTGCACCCAACGCAA 58.677 45.000 0.00 0.00 46.67 4.85
419 420 3.288484 TTGCACCCAACGCAAACA 58.712 50.000 0.00 0.00 45.91 2.83
420 421 1.591703 TTGCACCCAACGCAAACAA 59.408 47.368 0.00 0.00 45.91 2.83
421 422 0.459237 TTGCACCCAACGCAAACAAG 60.459 50.000 0.00 0.00 45.91 3.16
422 423 1.315981 TGCACCCAACGCAAACAAGA 61.316 50.000 0.00 0.00 36.17 3.02
423 424 0.594796 GCACCCAACGCAAACAAGAG 60.595 55.000 0.00 0.00 0.00 2.85
424 425 0.030638 CACCCAACGCAAACAAGAGG 59.969 55.000 0.00 0.00 0.00 3.69
425 426 1.106944 ACCCAACGCAAACAAGAGGG 61.107 55.000 0.00 0.00 40.66 4.30
426 427 1.106944 CCCAACGCAAACAAGAGGGT 61.107 55.000 0.00 0.00 0.00 4.34
427 428 0.744281 CCAACGCAAACAAGAGGGTT 59.256 50.000 0.00 0.00 40.88 4.11
428 429 1.838913 CAACGCAAACAAGAGGGTTG 58.161 50.000 7.73 7.73 46.96 3.77
429 430 1.134175 CAACGCAAACAAGAGGGTTGT 59.866 47.619 12.38 0.00 46.91 3.32
430 431 1.470051 ACGCAAACAAGAGGGTTGTT 58.530 45.000 0.00 0.00 43.72 2.83
431 432 2.645802 ACGCAAACAAGAGGGTTGTTA 58.354 42.857 3.67 0.00 41.30 2.41
432 433 3.018149 ACGCAAACAAGAGGGTTGTTAA 58.982 40.909 3.67 0.00 41.30 2.01
433 434 3.634910 ACGCAAACAAGAGGGTTGTTAAT 59.365 39.130 3.67 0.00 41.30 1.40
434 435 4.226761 CGCAAACAAGAGGGTTGTTAATC 58.773 43.478 3.67 0.00 41.30 1.75
435 436 4.261405 CGCAAACAAGAGGGTTGTTAATCA 60.261 41.667 3.67 0.00 41.30 2.57
436 437 5.596845 GCAAACAAGAGGGTTGTTAATCAA 58.403 37.500 3.67 0.00 41.30 2.57
448 449 4.752661 TGTTAATCAACTTGGCGGTTAC 57.247 40.909 0.00 0.00 35.56 2.50
449 450 4.391155 TGTTAATCAACTTGGCGGTTACT 58.609 39.130 0.00 0.00 35.56 2.24
450 451 4.822896 TGTTAATCAACTTGGCGGTTACTT 59.177 37.500 0.00 0.00 35.56 2.24
451 452 3.915437 AATCAACTTGGCGGTTACTTG 57.085 42.857 0.00 0.00 0.00 3.16
452 453 0.948678 TCAACTTGGCGGTTACTTGC 59.051 50.000 0.00 0.00 0.00 4.01
453 454 0.665835 CAACTTGGCGGTTACTTGCA 59.334 50.000 3.06 0.00 0.00 4.08
454 455 1.066303 CAACTTGGCGGTTACTTGCAA 59.934 47.619 0.00 0.00 0.00 4.08
455 456 0.951558 ACTTGGCGGTTACTTGCAAG 59.048 50.000 24.84 24.84 0.00 4.01
456 457 0.240945 CTTGGCGGTTACTTGCAAGG 59.759 55.000 29.18 12.81 0.00 3.61
457 458 0.179015 TTGGCGGTTACTTGCAAGGA 60.179 50.000 29.18 20.21 0.00 3.36
458 459 0.037590 TGGCGGTTACTTGCAAGGAT 59.962 50.000 29.18 12.81 0.00 3.24
459 460 1.173913 GGCGGTTACTTGCAAGGATT 58.826 50.000 29.18 12.07 0.00 3.01
460 461 2.290387 TGGCGGTTACTTGCAAGGATTA 60.290 45.455 29.18 11.03 0.00 1.75
461 462 2.750712 GGCGGTTACTTGCAAGGATTAA 59.249 45.455 29.18 16.17 0.00 1.40
462 463 3.191791 GGCGGTTACTTGCAAGGATTAAA 59.808 43.478 29.18 12.66 0.00 1.52
463 464 4.142249 GGCGGTTACTTGCAAGGATTAAAT 60.142 41.667 29.18 9.87 0.00 1.40
464 465 5.034797 GCGGTTACTTGCAAGGATTAAATC 58.965 41.667 29.18 14.11 0.00 2.17
465 466 5.163652 GCGGTTACTTGCAAGGATTAAATCT 60.164 40.000 29.18 8.41 0.00 2.40
466 467 6.487103 CGGTTACTTGCAAGGATTAAATCTC 58.513 40.000 29.18 7.92 0.00 2.75
467 468 6.487103 GGTTACTTGCAAGGATTAAATCTCG 58.513 40.000 29.18 1.64 0.00 4.04
468 469 6.093633 GGTTACTTGCAAGGATTAAATCTCGT 59.906 38.462 29.18 7.79 0.00 4.18
469 470 7.279313 GGTTACTTGCAAGGATTAAATCTCGTA 59.721 37.037 29.18 6.81 0.00 3.43
470 471 6.910536 ACTTGCAAGGATTAAATCTCGTAG 57.089 37.500 29.18 0.00 0.00 3.51
471 472 6.407202 ACTTGCAAGGATTAAATCTCGTAGT 58.593 36.000 29.18 0.42 0.00 2.73
472 473 6.313905 ACTTGCAAGGATTAAATCTCGTAGTG 59.686 38.462 29.18 0.00 0.00 2.74
473 474 5.116180 TGCAAGGATTAAATCTCGTAGTGG 58.884 41.667 0.00 0.00 0.00 4.00
474 475 5.116882 GCAAGGATTAAATCTCGTAGTGGT 58.883 41.667 0.00 0.00 0.00 4.16
475 476 5.585047 GCAAGGATTAAATCTCGTAGTGGTT 59.415 40.000 0.00 0.00 0.00 3.67
476 477 6.238130 GCAAGGATTAAATCTCGTAGTGGTTC 60.238 42.308 0.00 0.00 0.00 3.62
477 478 6.540438 AGGATTAAATCTCGTAGTGGTTCA 57.460 37.500 0.00 0.00 0.00 3.18
478 479 6.338937 AGGATTAAATCTCGTAGTGGTTCAC 58.661 40.000 0.00 0.00 34.10 3.18
479 480 6.070995 AGGATTAAATCTCGTAGTGGTTCACA 60.071 38.462 0.78 0.00 36.74 3.58
480 481 6.592607 GGATTAAATCTCGTAGTGGTTCACAA 59.407 38.462 0.78 0.00 36.74 3.33
481 482 7.201530 GGATTAAATCTCGTAGTGGTTCACAAG 60.202 40.741 0.78 0.00 36.74 3.16
482 483 4.602340 AATCTCGTAGTGGTTCACAAGT 57.398 40.909 0.78 0.00 36.74 3.16
483 484 5.717078 AATCTCGTAGTGGTTCACAAGTA 57.283 39.130 0.78 0.00 36.74 2.24
484 485 4.761235 TCTCGTAGTGGTTCACAAGTAG 57.239 45.455 0.78 0.00 36.74 2.57
556 557 1.570857 AAGGCCATTCCGACATCCCA 61.571 55.000 5.01 0.00 40.77 4.37
563 564 1.550130 TTCCGACATCCCACTCACCC 61.550 60.000 0.00 0.00 0.00 4.61
837 855 3.467374 CCCTTCTAGGCAGCTAAAGAG 57.533 52.381 0.00 0.00 32.73 2.85
847 865 1.396301 CAGCTAAAGAGGAAGCTTGCG 59.604 52.381 12.66 0.00 46.82 4.85
912 930 2.560119 AATTTGTTGCGCCGGCTGA 61.560 52.632 26.68 7.65 40.82 4.26
913 931 2.476534 AATTTGTTGCGCCGGCTGAG 62.477 55.000 26.68 10.55 40.82 3.35
1181 1210 2.154462 CGATGCACCAAAAGGAAGAGT 58.846 47.619 0.00 0.00 0.00 3.24
1332 1362 5.913137 ACAAAACAAGAGTGGAATTGACA 57.087 34.783 0.00 0.00 0.00 3.58
1363 1393 2.524887 TCTTCGGTCCCGGTGGTT 60.525 61.111 5.80 0.00 40.25 3.67
1451 1483 6.279513 AGTGGCACTAATGATAGAGATAGC 57.720 41.667 20.61 0.00 33.15 2.97
1452 1484 6.015918 AGTGGCACTAATGATAGAGATAGCT 58.984 40.000 20.61 0.00 33.15 3.32
1459 1491 9.853555 CACTAATGATAGAGATAGCTTAAGTGG 57.146 37.037 4.02 0.00 33.15 4.00
1489 1521 7.004086 TCTTTATGTTCCTTCCAAGTTCATGT 58.996 34.615 0.00 0.00 0.00 3.21
1726 1775 3.581770 TGGATGATGATGATGAGGAGGAC 59.418 47.826 0.00 0.00 0.00 3.85
1806 1855 3.555586 CCAAAAAGACCAAATGGAGGCAG 60.556 47.826 6.42 0.00 38.94 4.85
1939 1991 8.389779 ACATGTGTGAATACATAGACAAACAA 57.610 30.769 0.00 0.00 39.17 2.83
1957 2009 4.891992 ACAAAGTGTCACTAGTATGCCT 57.108 40.909 5.77 0.00 0.00 4.75
1973 2025 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
1976 2028 3.626670 GCCTCTACTTGACTAGCTCGTTA 59.373 47.826 0.00 0.00 0.00 3.18
1990 2042 7.553334 ACTAGCTCGTTAATCAAAGATGGTTA 58.447 34.615 0.00 0.00 30.84 2.85
1991 2043 8.204836 ACTAGCTCGTTAATCAAAGATGGTTAT 58.795 33.333 0.00 0.00 32.32 1.89
2010 2062 7.222000 GGTTATGTTTCCTAACCATGAACAA 57.778 36.000 7.24 0.00 44.95 2.83
2011 2063 7.662897 GGTTATGTTTCCTAACCATGAACAAA 58.337 34.615 7.24 0.00 44.95 2.83
2048 2100 5.623956 TTAACGGGATCACATCATTAGGT 57.376 39.130 0.00 0.00 0.00 3.08
2065 2117 7.797038 CATTAGGTGAATGATCTGATTGACA 57.203 36.000 0.00 0.00 46.94 3.58
2066 2118 8.392372 CATTAGGTGAATGATCTGATTGACAT 57.608 34.615 0.00 0.00 46.94 3.06
2077 2129 3.266513 TCTGATTGACATGACCCATTCCA 59.733 43.478 0.00 0.00 0.00 3.53
2090 2142 2.887152 CCCATTCCATTAGCTTAGCACC 59.113 50.000 7.07 0.00 0.00 5.01
2091 2143 2.887152 CCATTCCATTAGCTTAGCACCC 59.113 50.000 7.07 0.00 0.00 4.61
2096 2148 2.224281 CCATTAGCTTAGCACCCGATCA 60.224 50.000 7.07 0.00 0.00 2.92
2171 2223 3.689161 TGAGATTATGCAACTCCCGTTTG 59.311 43.478 0.00 0.00 0.00 2.93
2245 2297 2.614134 AAGGAGCTCTACAGGTGTCT 57.386 50.000 14.64 0.00 0.00 3.41
2247 2299 1.107945 GGAGCTCTACAGGTGTCTCC 58.892 60.000 14.64 1.08 34.13 3.71
2248 2300 1.617263 GGAGCTCTACAGGTGTCTCCA 60.617 57.143 14.64 0.00 39.75 3.86
2262 2314 3.502211 GTGTCTCCAAAGGTACATGTTGG 59.498 47.826 2.30 5.28 42.70 3.77
2293 2345 7.254319 GCGTATTTCGAGATTAGGATTTGTCAA 60.254 37.037 0.00 0.00 42.86 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.153147 GGATTCCTTCTCCGCCACC 60.153 63.158 0.00 0.00 0.00 4.61
5 6 1.069358 CACTAGGATTCCTTCTCCGCC 59.931 57.143 11.25 0.00 37.88 6.13
6 7 1.539280 GCACTAGGATTCCTTCTCCGC 60.539 57.143 11.25 3.76 37.88 5.54
7 8 1.069358 GGCACTAGGATTCCTTCTCCG 59.931 57.143 11.25 0.00 37.88 4.63
8 9 1.418264 GGGCACTAGGATTCCTTCTCC 59.582 57.143 11.25 7.38 34.61 3.71
9 10 1.418264 GGGGCACTAGGATTCCTTCTC 59.582 57.143 11.25 0.00 34.61 2.87
10 11 1.010170 AGGGGCACTAGGATTCCTTCT 59.990 52.381 11.25 0.00 34.61 2.85
11 12 1.512735 AGGGGCACTAGGATTCCTTC 58.487 55.000 11.25 0.00 34.61 3.46
12 13 2.409570 GTAGGGGCACTAGGATTCCTT 58.590 52.381 11.25 0.00 34.61 3.36
13 14 1.414685 GGTAGGGGCACTAGGATTCCT 60.415 57.143 10.72 10.72 37.71 3.36
14 15 1.057471 GGTAGGGGCACTAGGATTCC 58.943 60.000 0.00 0.00 30.77 3.01
15 16 1.057471 GGGTAGGGGCACTAGGATTC 58.943 60.000 0.00 0.00 30.77 2.52
16 17 0.401541 GGGGTAGGGGCACTAGGATT 60.402 60.000 0.00 0.00 30.77 3.01
17 18 1.239235 GGGGTAGGGGCACTAGGAT 59.761 63.158 0.00 0.00 30.77 3.24
18 19 2.700803 GGGGTAGGGGCACTAGGA 59.299 66.667 0.00 0.00 30.77 2.94
19 20 2.842936 CGGGGTAGGGGCACTAGG 60.843 72.222 0.00 0.00 30.77 3.02
20 21 2.842936 CCGGGGTAGGGGCACTAG 60.843 72.222 0.00 0.00 30.77 2.57
26 27 1.228800 CTACTAGCCGGGGTAGGGG 60.229 68.421 30.67 20.57 37.87 4.79
27 28 0.408700 ATCTACTAGCCGGGGTAGGG 59.591 60.000 30.67 23.24 37.87 3.53
28 29 2.356947 CCTATCTACTAGCCGGGGTAGG 60.357 59.091 30.67 17.60 37.87 3.18
29 30 2.308275 ACCTATCTACTAGCCGGGGTAG 59.692 54.545 27.21 27.21 39.25 3.18
30 31 2.352371 ACCTATCTACTAGCCGGGGTA 58.648 52.381 2.18 5.73 0.00 3.69
31 32 1.156216 ACCTATCTACTAGCCGGGGT 58.844 55.000 2.18 3.37 0.00 4.95
32 33 2.308275 ACTACCTATCTACTAGCCGGGG 59.692 54.545 2.18 0.00 0.00 5.73
33 34 3.263937 AGACTACCTATCTACTAGCCGGG 59.736 52.174 2.18 0.00 0.00 5.73
34 35 4.556592 AGACTACCTATCTACTAGCCGG 57.443 50.000 0.00 0.00 0.00 6.13
35 36 5.996513 TGAAAGACTACCTATCTACTAGCCG 59.003 44.000 0.00 0.00 0.00 5.52
36 37 7.820578 TTGAAAGACTACCTATCTACTAGCC 57.179 40.000 0.00 0.00 0.00 3.93
37 38 9.902196 GAATTGAAAGACTACCTATCTACTAGC 57.098 37.037 0.00 0.00 0.00 3.42
59 60 5.363580 AGTGTTTTGGTCCATGACAAGAATT 59.636 36.000 8.86 0.00 33.68 2.17
60 61 4.895297 AGTGTTTTGGTCCATGACAAGAAT 59.105 37.500 8.86 0.00 33.68 2.40
61 62 4.277476 AGTGTTTTGGTCCATGACAAGAA 58.723 39.130 8.86 0.00 33.68 2.52
62 63 3.897239 AGTGTTTTGGTCCATGACAAGA 58.103 40.909 8.86 0.00 33.68 3.02
63 64 4.023193 GGTAGTGTTTTGGTCCATGACAAG 60.023 45.833 8.86 0.00 33.68 3.16
64 65 3.886505 GGTAGTGTTTTGGTCCATGACAA 59.113 43.478 8.86 0.00 33.68 3.18
65 66 3.137544 AGGTAGTGTTTTGGTCCATGACA 59.862 43.478 0.00 0.00 33.68 3.58
66 67 3.751518 AGGTAGTGTTTTGGTCCATGAC 58.248 45.455 0.00 0.00 0.00 3.06
67 68 5.487488 AGATAGGTAGTGTTTTGGTCCATGA 59.513 40.000 0.00 0.00 0.00 3.07
68 69 5.745227 AGATAGGTAGTGTTTTGGTCCATG 58.255 41.667 0.00 0.00 0.00 3.66
69 70 7.691993 ATAGATAGGTAGTGTTTTGGTCCAT 57.308 36.000 0.00 0.00 0.00 3.41
70 71 7.504926 AATAGATAGGTAGTGTTTTGGTCCA 57.495 36.000 0.00 0.00 0.00 4.02
71 72 7.656542 GCTAATAGATAGGTAGTGTTTTGGTCC 59.343 40.741 0.00 0.00 31.83 4.46
72 73 7.656542 GGCTAATAGATAGGTAGTGTTTTGGTC 59.343 40.741 0.00 0.00 31.83 4.02
73 74 7.126726 TGGCTAATAGATAGGTAGTGTTTTGGT 59.873 37.037 0.00 0.00 31.83 3.67
74 75 7.506114 TGGCTAATAGATAGGTAGTGTTTTGG 58.494 38.462 0.00 0.00 31.83 3.28
75 76 8.421784 TCTGGCTAATAGATAGGTAGTGTTTTG 58.578 37.037 0.00 0.00 31.83 2.44
76 77 8.548880 TCTGGCTAATAGATAGGTAGTGTTTT 57.451 34.615 0.00 0.00 31.83 2.43
77 78 7.256012 GCTCTGGCTAATAGATAGGTAGTGTTT 60.256 40.741 0.00 0.00 35.22 2.83
78 79 6.209788 GCTCTGGCTAATAGATAGGTAGTGTT 59.790 42.308 0.00 0.00 35.22 3.32
79 80 5.712917 GCTCTGGCTAATAGATAGGTAGTGT 59.287 44.000 0.00 0.00 35.22 3.55
80 81 5.126384 GGCTCTGGCTAATAGATAGGTAGTG 59.874 48.000 0.00 0.00 38.73 2.74
81 82 5.265989 GGCTCTGGCTAATAGATAGGTAGT 58.734 45.833 0.00 0.00 38.73 2.73
82 83 4.336993 CGGCTCTGGCTAATAGATAGGTAG 59.663 50.000 0.00 0.00 38.73 3.18
83 84 4.018688 TCGGCTCTGGCTAATAGATAGGTA 60.019 45.833 0.00 0.00 38.73 3.08
84 85 3.093057 CGGCTCTGGCTAATAGATAGGT 58.907 50.000 0.00 0.00 38.73 3.08
85 86 3.357203 TCGGCTCTGGCTAATAGATAGG 58.643 50.000 0.00 0.00 38.73 2.57
86 87 3.380004 CCTCGGCTCTGGCTAATAGATAG 59.620 52.174 0.00 0.00 38.73 2.08
87 88 3.357203 CCTCGGCTCTGGCTAATAGATA 58.643 50.000 0.00 0.00 38.73 1.98
88 89 2.175202 CCTCGGCTCTGGCTAATAGAT 58.825 52.381 0.00 0.00 38.73 1.98
89 90 1.621992 CCTCGGCTCTGGCTAATAGA 58.378 55.000 0.00 0.00 38.73 1.98
90 91 0.037790 GCCTCGGCTCTGGCTAATAG 60.038 60.000 0.00 0.00 45.26 1.73
91 92 1.806461 CGCCTCGGCTCTGGCTAATA 61.806 60.000 6.35 0.00 46.42 0.98
92 93 2.825264 GCCTCGGCTCTGGCTAAT 59.175 61.111 0.00 0.00 45.26 1.73
93 94 3.838271 CGCCTCGGCTCTGGCTAA 61.838 66.667 6.35 0.00 46.42 3.09
97 98 3.997064 CTTGACGCCTCGGCTCTGG 62.997 68.421 6.35 0.00 35.04 3.86
98 99 2.290122 ATCTTGACGCCTCGGCTCTG 62.290 60.000 6.35 0.00 35.04 3.35
99 100 1.608717 AATCTTGACGCCTCGGCTCT 61.609 55.000 6.35 0.00 35.04 4.09
100 101 0.741221 AAATCTTGACGCCTCGGCTC 60.741 55.000 6.35 3.75 35.04 4.70
101 102 0.741221 GAAATCTTGACGCCTCGGCT 60.741 55.000 6.35 0.00 35.04 5.52
102 103 1.706287 GGAAATCTTGACGCCTCGGC 61.706 60.000 0.00 0.00 34.27 5.54
103 104 1.090052 GGGAAATCTTGACGCCTCGG 61.090 60.000 0.00 0.00 0.00 4.63
104 105 0.108138 AGGGAAATCTTGACGCCTCG 60.108 55.000 0.00 0.00 0.00 4.63
105 106 2.115343 AAGGGAAATCTTGACGCCTC 57.885 50.000 0.00 0.00 0.00 4.70
106 107 2.437413 GAAAGGGAAATCTTGACGCCT 58.563 47.619 0.00 0.00 0.00 5.52
107 108 1.472878 GGAAAGGGAAATCTTGACGCC 59.527 52.381 0.00 0.00 0.00 5.68
108 109 1.130561 CGGAAAGGGAAATCTTGACGC 59.869 52.381 0.00 0.00 0.00 5.19
109 110 1.130561 GCGGAAAGGGAAATCTTGACG 59.869 52.381 0.00 0.00 33.13 4.35
110 111 1.472878 GGCGGAAAGGGAAATCTTGAC 59.527 52.381 0.00 0.00 0.00 3.18
111 112 1.074727 TGGCGGAAAGGGAAATCTTGA 59.925 47.619 0.00 0.00 0.00 3.02
112 113 1.544724 TGGCGGAAAGGGAAATCTTG 58.455 50.000 0.00 0.00 0.00 3.02
113 114 2.497273 CAATGGCGGAAAGGGAAATCTT 59.503 45.455 0.00 0.00 0.00 2.40
114 115 2.102578 CAATGGCGGAAAGGGAAATCT 58.897 47.619 0.00 0.00 0.00 2.40
115 116 1.824852 ACAATGGCGGAAAGGGAAATC 59.175 47.619 0.00 0.00 0.00 2.17
116 117 1.824852 GACAATGGCGGAAAGGGAAAT 59.175 47.619 0.00 0.00 0.00 2.17
117 118 1.253100 GACAATGGCGGAAAGGGAAA 58.747 50.000 0.00 0.00 0.00 3.13
118 119 0.610785 GGACAATGGCGGAAAGGGAA 60.611 55.000 0.00 0.00 0.00 3.97
119 120 1.001393 GGACAATGGCGGAAAGGGA 60.001 57.895 0.00 0.00 0.00 4.20
120 121 2.406616 CGGACAATGGCGGAAAGGG 61.407 63.158 0.00 0.00 0.00 3.95
121 122 0.958382 TTCGGACAATGGCGGAAAGG 60.958 55.000 6.62 0.00 0.00 3.11
122 123 0.447801 CTTCGGACAATGGCGGAAAG 59.552 55.000 10.31 1.86 0.00 2.62
123 124 1.582610 GCTTCGGACAATGGCGGAAA 61.583 55.000 10.31 0.00 0.00 3.13
124 125 2.038269 GCTTCGGACAATGGCGGAA 61.038 57.895 8.80 8.80 0.00 4.30
125 126 2.435938 GCTTCGGACAATGGCGGA 60.436 61.111 0.00 0.00 0.00 5.54
126 127 3.864686 CGCTTCGGACAATGGCGG 61.865 66.667 0.00 0.00 41.77 6.13
127 128 2.094126 GATCGCTTCGGACAATGGCG 62.094 60.000 0.00 0.00 45.93 5.69
128 129 1.643832 GATCGCTTCGGACAATGGC 59.356 57.895 0.00 0.00 0.00 4.40
129 130 0.179073 AGGATCGCTTCGGACAATGG 60.179 55.000 0.00 0.00 0.00 3.16
130 131 1.212616 GAGGATCGCTTCGGACAATG 58.787 55.000 0.00 0.00 0.00 2.82
131 132 0.105039 GGAGGATCGCTTCGGACAAT 59.895 55.000 0.00 0.00 34.37 2.71
132 133 0.970937 AGGAGGATCGCTTCGGACAA 60.971 55.000 0.00 0.00 34.37 3.18
133 134 1.379977 AGGAGGATCGCTTCGGACA 60.380 57.895 0.00 0.00 34.37 4.02
134 135 1.360911 GAGGAGGATCGCTTCGGAC 59.639 63.158 0.00 0.00 34.37 4.79
135 136 0.683179 TTGAGGAGGATCGCTTCGGA 60.683 55.000 0.00 0.00 34.37 4.55
136 137 0.249238 CTTGAGGAGGATCGCTTCGG 60.249 60.000 0.00 0.00 34.37 4.30
137 138 0.457851 ACTTGAGGAGGATCGCTTCG 59.542 55.000 0.00 0.00 34.37 3.79
138 139 2.682155 AACTTGAGGAGGATCGCTTC 57.318 50.000 0.00 0.00 34.37 3.86
139 140 2.675317 CGAAACTTGAGGAGGATCGCTT 60.675 50.000 0.00 0.00 34.37 4.68
140 141 1.134965 CGAAACTTGAGGAGGATCGCT 60.135 52.381 0.00 0.00 34.37 4.93
141 142 1.281899 CGAAACTTGAGGAGGATCGC 58.718 55.000 0.00 0.00 34.37 4.58
142 143 1.927895 CCGAAACTTGAGGAGGATCG 58.072 55.000 0.00 0.00 37.34 3.69
143 144 1.066143 TGCCGAAACTTGAGGAGGATC 60.066 52.381 0.00 0.00 0.00 3.36
144 145 0.984230 TGCCGAAACTTGAGGAGGAT 59.016 50.000 0.00 0.00 0.00 3.24
145 146 0.034896 GTGCCGAAACTTGAGGAGGA 59.965 55.000 0.00 0.00 0.00 3.71
146 147 0.035458 AGTGCCGAAACTTGAGGAGG 59.965 55.000 0.00 0.00 0.00 4.30
147 148 1.884235 AAGTGCCGAAACTTGAGGAG 58.116 50.000 2.37 0.00 38.95 3.69
148 149 3.695830 ATAAGTGCCGAAACTTGAGGA 57.304 42.857 11.57 0.00 40.58 3.71
149 150 4.003648 AGAATAAGTGCCGAAACTTGAGG 58.996 43.478 11.57 0.00 40.58 3.86
150 151 4.093556 GGAGAATAAGTGCCGAAACTTGAG 59.906 45.833 11.57 0.00 40.58 3.02
151 152 4.000988 GGAGAATAAGTGCCGAAACTTGA 58.999 43.478 11.57 0.00 40.58 3.02
152 153 3.181520 CGGAGAATAAGTGCCGAAACTTG 60.182 47.826 11.57 0.00 46.29 3.16
153 154 3.000727 CGGAGAATAAGTGCCGAAACTT 58.999 45.455 0.00 7.67 46.29 2.66
154 155 2.618053 CGGAGAATAAGTGCCGAAACT 58.382 47.619 0.00 0.00 46.29 2.66
159 160 2.295253 AACTCGGAGAATAAGTGCCG 57.705 50.000 12.86 0.00 44.83 5.69
160 161 4.098196 AGACTAACTCGGAGAATAAGTGCC 59.902 45.833 12.86 0.00 34.09 5.01
161 162 5.251601 AGACTAACTCGGAGAATAAGTGC 57.748 43.478 12.86 4.37 34.09 4.40
162 163 6.267070 GGAAGACTAACTCGGAGAATAAGTG 58.733 44.000 12.86 0.00 34.09 3.16
163 164 5.066246 CGGAAGACTAACTCGGAGAATAAGT 59.934 44.000 12.86 8.73 34.09 2.24
164 165 5.505985 CCGGAAGACTAACTCGGAGAATAAG 60.506 48.000 12.86 5.69 37.95 1.73
165 166 4.337555 CCGGAAGACTAACTCGGAGAATAA 59.662 45.833 12.86 0.00 37.95 1.40
166 167 3.881688 CCGGAAGACTAACTCGGAGAATA 59.118 47.826 12.86 3.77 37.95 1.75
167 168 2.688958 CCGGAAGACTAACTCGGAGAAT 59.311 50.000 12.86 2.70 37.95 2.40
168 169 2.089980 CCGGAAGACTAACTCGGAGAA 58.910 52.381 12.86 0.00 37.95 2.87
169 170 1.681166 CCCGGAAGACTAACTCGGAGA 60.681 57.143 12.86 0.00 37.95 3.71
170 171 0.739561 CCCGGAAGACTAACTCGGAG 59.260 60.000 0.73 2.83 37.95 4.63
171 172 1.318158 GCCCGGAAGACTAACTCGGA 61.318 60.000 0.73 0.00 37.95 4.55
172 173 1.141234 GCCCGGAAGACTAACTCGG 59.859 63.158 0.73 0.00 36.27 4.63
173 174 0.460311 ATGCCCGGAAGACTAACTCG 59.540 55.000 0.73 0.00 0.00 4.18
174 175 1.480954 TGATGCCCGGAAGACTAACTC 59.519 52.381 0.73 0.00 0.00 3.01
175 176 1.568504 TGATGCCCGGAAGACTAACT 58.431 50.000 0.73 0.00 0.00 2.24
176 177 2.396590 TTGATGCCCGGAAGACTAAC 57.603 50.000 0.73 0.00 0.00 2.34
177 178 2.158813 GGATTGATGCCCGGAAGACTAA 60.159 50.000 0.73 0.00 0.00 2.24
178 179 1.416401 GGATTGATGCCCGGAAGACTA 59.584 52.381 0.73 0.00 0.00 2.59
179 180 0.181350 GGATTGATGCCCGGAAGACT 59.819 55.000 0.73 0.00 0.00 3.24
180 181 0.181350 AGGATTGATGCCCGGAAGAC 59.819 55.000 0.73 0.00 0.00 3.01
181 182 0.469917 GAGGATTGATGCCCGGAAGA 59.530 55.000 0.73 0.00 0.00 2.87
182 183 0.536006 GGAGGATTGATGCCCGGAAG 60.536 60.000 0.73 0.00 0.00 3.46
183 184 0.988145 AGGAGGATTGATGCCCGGAA 60.988 55.000 0.73 0.00 0.00 4.30
184 185 1.384502 AGGAGGATTGATGCCCGGA 60.385 57.895 0.73 0.00 0.00 5.14
185 186 1.072159 GAGGAGGATTGATGCCCGG 59.928 63.158 0.00 0.00 0.00 5.73
186 187 0.181114 TTGAGGAGGATTGATGCCCG 59.819 55.000 0.00 0.00 0.00 6.13
187 188 1.213926 ACTTGAGGAGGATTGATGCCC 59.786 52.381 0.00 0.00 0.00 5.36
188 189 2.725221 ACTTGAGGAGGATTGATGCC 57.275 50.000 0.00 0.00 0.00 4.40
189 190 3.760684 ACAAACTTGAGGAGGATTGATGC 59.239 43.478 0.00 0.00 33.23 3.91
190 191 5.123502 CAGACAAACTTGAGGAGGATTGATG 59.876 44.000 0.00 0.00 33.23 3.07
191 192 5.222007 ACAGACAAACTTGAGGAGGATTGAT 60.222 40.000 0.00 0.00 33.23 2.57
192 193 4.103153 ACAGACAAACTTGAGGAGGATTGA 59.897 41.667 0.00 0.00 33.23 2.57
193 194 4.392940 ACAGACAAACTTGAGGAGGATTG 58.607 43.478 0.00 0.00 34.40 2.67
194 195 4.713792 ACAGACAAACTTGAGGAGGATT 57.286 40.909 0.00 0.00 0.00 3.01
195 196 4.713792 AACAGACAAACTTGAGGAGGAT 57.286 40.909 0.00 0.00 0.00 3.24
196 197 4.654262 ACTAACAGACAAACTTGAGGAGGA 59.346 41.667 0.00 0.00 0.00 3.71
197 198 4.962155 ACTAACAGACAAACTTGAGGAGG 58.038 43.478 0.00 0.00 0.00 4.30
198 199 7.378966 TCATACTAACAGACAAACTTGAGGAG 58.621 38.462 0.00 0.00 0.00 3.69
199 200 7.297936 TCATACTAACAGACAAACTTGAGGA 57.702 36.000 0.00 0.00 0.00 3.71
200 201 7.962964 TTCATACTAACAGACAAACTTGAGG 57.037 36.000 0.00 0.00 0.00 3.86
213 214 9.998106 GGGAGCTCTTTATAATTCATACTAACA 57.002 33.333 14.64 0.00 0.00 2.41
214 215 9.141400 CGGGAGCTCTTTATAATTCATACTAAC 57.859 37.037 14.64 0.00 0.00 2.34
215 216 8.867097 ACGGGAGCTCTTTATAATTCATACTAA 58.133 33.333 14.64 0.00 0.00 2.24
216 217 8.304596 CACGGGAGCTCTTTATAATTCATACTA 58.695 37.037 14.64 0.00 0.00 1.82
217 218 7.155328 CACGGGAGCTCTTTATAATTCATACT 58.845 38.462 14.64 0.00 0.00 2.12
218 219 6.929606 ACACGGGAGCTCTTTATAATTCATAC 59.070 38.462 14.64 0.00 0.00 2.39
219 220 7.062749 ACACGGGAGCTCTTTATAATTCATA 57.937 36.000 14.64 0.00 0.00 2.15
220 221 5.930135 ACACGGGAGCTCTTTATAATTCAT 58.070 37.500 14.64 0.00 0.00 2.57
221 222 5.353394 ACACGGGAGCTCTTTATAATTCA 57.647 39.130 14.64 0.00 0.00 2.57
222 223 6.746120 TCTACACGGGAGCTCTTTATAATTC 58.254 40.000 14.64 0.00 0.00 2.17
223 224 6.726490 TCTACACGGGAGCTCTTTATAATT 57.274 37.500 14.64 0.00 0.00 1.40
224 225 6.919775 ATCTACACGGGAGCTCTTTATAAT 57.080 37.500 14.64 0.00 0.00 1.28
225 226 6.239232 GGAATCTACACGGGAGCTCTTTATAA 60.239 42.308 14.64 0.00 0.00 0.98
226 227 5.243283 GGAATCTACACGGGAGCTCTTTATA 59.757 44.000 14.64 0.00 0.00 0.98
227 228 4.039366 GGAATCTACACGGGAGCTCTTTAT 59.961 45.833 14.64 0.00 0.00 1.40
228 229 3.383825 GGAATCTACACGGGAGCTCTTTA 59.616 47.826 14.64 0.00 0.00 1.85
229 230 2.168728 GGAATCTACACGGGAGCTCTTT 59.831 50.000 14.64 0.00 0.00 2.52
230 231 1.757699 GGAATCTACACGGGAGCTCTT 59.242 52.381 14.64 0.00 0.00 2.85
231 232 1.063567 AGGAATCTACACGGGAGCTCT 60.064 52.381 14.64 0.00 0.00 4.09
232 233 1.067821 CAGGAATCTACACGGGAGCTC 59.932 57.143 4.71 4.71 0.00 4.09
233 234 1.115467 CAGGAATCTACACGGGAGCT 58.885 55.000 0.00 0.00 0.00 4.09
234 235 0.530870 GCAGGAATCTACACGGGAGC 60.531 60.000 0.00 0.00 0.00 4.70
235 236 1.115467 AGCAGGAATCTACACGGGAG 58.885 55.000 0.00 0.00 0.00 4.30
236 237 2.307768 CTAGCAGGAATCTACACGGGA 58.692 52.381 0.00 0.00 0.00 5.14
237 238 1.269831 GCTAGCAGGAATCTACACGGG 60.270 57.143 10.63 0.00 0.00 5.28
238 239 1.683917 AGCTAGCAGGAATCTACACGG 59.316 52.381 18.83 0.00 0.00 4.94
239 240 2.621055 AGAGCTAGCAGGAATCTACACG 59.379 50.000 18.83 0.00 0.00 4.49
240 241 4.664150 AAGAGCTAGCAGGAATCTACAC 57.336 45.455 18.83 0.00 0.00 2.90
241 242 4.141846 CCAAAGAGCTAGCAGGAATCTACA 60.142 45.833 18.83 0.00 0.00 2.74
242 243 4.376146 CCAAAGAGCTAGCAGGAATCTAC 58.624 47.826 18.83 0.00 0.00 2.59
243 244 3.389329 CCCAAAGAGCTAGCAGGAATCTA 59.611 47.826 18.83 0.00 0.00 1.98
244 245 2.172293 CCCAAAGAGCTAGCAGGAATCT 59.828 50.000 18.83 7.60 0.00 2.40
245 246 2.171448 TCCCAAAGAGCTAGCAGGAATC 59.829 50.000 18.83 5.05 0.00 2.52
246 247 2.200081 TCCCAAAGAGCTAGCAGGAAT 58.800 47.619 18.83 0.00 0.00 3.01
247 248 1.656587 TCCCAAAGAGCTAGCAGGAA 58.343 50.000 18.83 0.00 0.00 3.36
248 249 1.885049 ATCCCAAAGAGCTAGCAGGA 58.115 50.000 18.83 12.56 0.00 3.86
249 250 2.725221 AATCCCAAAGAGCTAGCAGG 57.275 50.000 18.83 10.04 0.00 4.85
250 251 2.948315 GGAAATCCCAAAGAGCTAGCAG 59.052 50.000 18.83 0.84 34.14 4.24
251 252 3.004752 GGAAATCCCAAAGAGCTAGCA 57.995 47.619 18.83 0.00 34.14 3.49
264 265 2.437651 CCTCTCCTCTTCAGGGAAATCC 59.562 54.545 0.00 0.00 40.80 3.01
265 266 3.379452 TCCTCTCCTCTTCAGGGAAATC 58.621 50.000 0.00 0.00 40.80 2.17
266 267 3.498614 TCCTCTCCTCTTCAGGGAAAT 57.501 47.619 0.00 0.00 40.80 2.17
267 268 3.110705 CATCCTCTCCTCTTCAGGGAAA 58.889 50.000 0.00 0.00 40.80 3.13
268 269 2.316067 TCATCCTCTCCTCTTCAGGGAA 59.684 50.000 0.00 0.00 40.80 3.97
269 270 1.933051 TCATCCTCTCCTCTTCAGGGA 59.067 52.381 0.00 0.00 40.80 4.20
270 271 2.468301 TCATCCTCTCCTCTTCAGGG 57.532 55.000 0.00 0.00 40.80 4.45
271 272 2.037511 GCATCATCCTCTCCTCTTCAGG 59.962 54.545 0.00 0.00 42.01 3.86
272 273 2.699321 TGCATCATCCTCTCCTCTTCAG 59.301 50.000 0.00 0.00 0.00 3.02
273 274 2.433604 GTGCATCATCCTCTCCTCTTCA 59.566 50.000 0.00 0.00 0.00 3.02
274 275 2.699846 AGTGCATCATCCTCTCCTCTTC 59.300 50.000 0.00 0.00 0.00 2.87
275 276 2.761809 AGTGCATCATCCTCTCCTCTT 58.238 47.619 0.00 0.00 0.00 2.85
276 277 2.475339 AGTGCATCATCCTCTCCTCT 57.525 50.000 0.00 0.00 0.00 3.69
277 278 2.961741 TGTAGTGCATCATCCTCTCCTC 59.038 50.000 0.00 0.00 0.00 3.71
278 279 2.964464 CTGTAGTGCATCATCCTCTCCT 59.036 50.000 0.00 0.00 0.00 3.69
279 280 2.697751 ACTGTAGTGCATCATCCTCTCC 59.302 50.000 0.00 0.00 0.00 3.71
280 281 4.824537 TCTACTGTAGTGCATCATCCTCTC 59.175 45.833 14.11 0.00 0.00 3.20
281 282 4.797743 TCTACTGTAGTGCATCATCCTCT 58.202 43.478 14.11 0.00 0.00 3.69
282 283 4.824537 TCTCTACTGTAGTGCATCATCCTC 59.175 45.833 14.11 0.00 0.00 3.71
283 284 4.797743 TCTCTACTGTAGTGCATCATCCT 58.202 43.478 14.11 0.00 0.00 3.24
284 285 5.720371 ATCTCTACTGTAGTGCATCATCC 57.280 43.478 14.11 0.00 0.00 3.51
285 286 6.806249 GCTTATCTCTACTGTAGTGCATCATC 59.194 42.308 14.11 0.00 0.00 2.92
286 287 6.266330 TGCTTATCTCTACTGTAGTGCATCAT 59.734 38.462 14.11 4.83 0.00 2.45
287 288 5.594317 TGCTTATCTCTACTGTAGTGCATCA 59.406 40.000 14.11 3.63 0.00 3.07
288 289 6.078202 TGCTTATCTCTACTGTAGTGCATC 57.922 41.667 14.11 1.42 0.00 3.91
289 290 6.662865 ATGCTTATCTCTACTGTAGTGCAT 57.337 37.500 14.11 15.60 33.38 3.96
290 291 6.471233 AATGCTTATCTCTACTGTAGTGCA 57.529 37.500 14.11 14.39 0.00 4.57
291 292 7.206687 AGAAATGCTTATCTCTACTGTAGTGC 58.793 38.462 14.11 10.29 0.00 4.40
292 293 8.795786 GAGAAATGCTTATCTCTACTGTAGTG 57.204 38.462 14.11 11.94 39.18 2.74
302 303 7.264221 TCTTGACTGAGAGAAATGCTTATCTC 58.736 38.462 3.95 3.95 46.01 2.75
303 304 7.180322 TCTTGACTGAGAGAAATGCTTATCT 57.820 36.000 0.00 0.00 35.80 1.98
304 305 7.548780 AGTTCTTGACTGAGAGAAATGCTTATC 59.451 37.037 0.00 0.00 37.17 1.75
305 306 7.393216 AGTTCTTGACTGAGAGAAATGCTTAT 58.607 34.615 0.00 0.00 37.17 1.73
306 307 6.763355 AGTTCTTGACTGAGAGAAATGCTTA 58.237 36.000 0.00 0.00 37.17 3.09
307 308 5.619220 AGTTCTTGACTGAGAGAAATGCTT 58.381 37.500 0.00 0.00 37.17 3.91
308 309 5.226194 AGTTCTTGACTGAGAGAAATGCT 57.774 39.130 0.00 0.00 37.17 3.79
309 310 6.091986 CCTTAGTTCTTGACTGAGAGAAATGC 59.908 42.308 0.16 0.00 42.90 3.56
310 311 7.158021 ACCTTAGTTCTTGACTGAGAGAAATG 58.842 38.462 0.16 0.00 42.90 2.32
311 312 7.309770 ACCTTAGTTCTTGACTGAGAGAAAT 57.690 36.000 0.16 0.00 42.90 2.17
312 313 6.732896 ACCTTAGTTCTTGACTGAGAGAAA 57.267 37.500 0.16 0.00 42.90 2.52
313 314 6.732896 AACCTTAGTTCTTGACTGAGAGAA 57.267 37.500 0.16 0.00 42.90 2.87
314 315 6.208994 GGTAACCTTAGTTCTTGACTGAGAGA 59.791 42.308 0.16 0.00 42.90 3.10
315 316 6.015350 TGGTAACCTTAGTTCTTGACTGAGAG 60.015 42.308 0.16 0.00 42.90 3.20
316 317 5.836898 TGGTAACCTTAGTTCTTGACTGAGA 59.163 40.000 0.16 0.00 42.90 3.27
317 318 6.097915 TGGTAACCTTAGTTCTTGACTGAG 57.902 41.667 0.00 0.00 40.65 3.35
318 319 6.488769 TTGGTAACCTTAGTTCTTGACTGA 57.511 37.500 0.00 0.00 39.48 3.41
319 320 6.371825 GGATTGGTAACCTTAGTTCTTGACTG 59.628 42.308 0.00 0.00 39.48 3.51
320 321 6.043938 TGGATTGGTAACCTTAGTTCTTGACT 59.956 38.462 0.00 0.00 42.55 3.41
321 322 6.235664 TGGATTGGTAACCTTAGTTCTTGAC 58.764 40.000 0.00 0.00 37.42 3.18
322 323 6.043938 ACTGGATTGGTAACCTTAGTTCTTGA 59.956 38.462 0.00 0.00 37.42 3.02
323 324 6.238648 ACTGGATTGGTAACCTTAGTTCTTG 58.761 40.000 0.00 0.00 37.42 3.02
324 325 6.449830 ACTGGATTGGTAACCTTAGTTCTT 57.550 37.500 0.00 0.00 37.42 2.52
325 326 6.238648 CAACTGGATTGGTAACCTTAGTTCT 58.761 40.000 0.00 0.00 34.55 3.01
326 327 6.496338 CAACTGGATTGGTAACCTTAGTTC 57.504 41.667 0.00 0.00 34.55 3.01
339 340 4.074259 TGTGTGATTCTCCAACTGGATTG 58.926 43.478 0.00 0.00 44.46 2.67
340 341 4.371624 TGTGTGATTCTCCAACTGGATT 57.628 40.909 0.00 0.00 44.46 3.01
341 342 4.371624 TTGTGTGATTCTCCAACTGGAT 57.628 40.909 0.00 0.00 44.46 3.41
342 343 3.855255 TTGTGTGATTCTCCAACTGGA 57.145 42.857 0.00 0.00 43.08 3.86
343 344 3.304928 GCTTTGTGTGATTCTCCAACTGG 60.305 47.826 0.00 0.00 0.00 4.00
344 345 3.304928 GGCTTTGTGTGATTCTCCAACTG 60.305 47.826 0.00 0.00 0.00 3.16
345 346 2.887152 GGCTTTGTGTGATTCTCCAACT 59.113 45.455 0.00 0.00 0.00 3.16
346 347 2.887152 AGGCTTTGTGTGATTCTCCAAC 59.113 45.455 0.00 0.00 0.00 3.77
347 348 3.149196 GAGGCTTTGTGTGATTCTCCAA 58.851 45.455 0.00 0.00 0.00 3.53
348 349 2.106338 TGAGGCTTTGTGTGATTCTCCA 59.894 45.455 0.00 0.00 0.00 3.86
349 350 2.783135 TGAGGCTTTGTGTGATTCTCC 58.217 47.619 0.00 0.00 0.00 3.71
350 351 4.005650 TCATGAGGCTTTGTGTGATTCTC 58.994 43.478 0.00 0.00 0.00 2.87
351 352 4.025040 TCATGAGGCTTTGTGTGATTCT 57.975 40.909 0.00 0.00 0.00 2.40
352 353 4.022935 TGTTCATGAGGCTTTGTGTGATTC 60.023 41.667 0.00 0.00 0.00 2.52
353 354 3.890756 TGTTCATGAGGCTTTGTGTGATT 59.109 39.130 0.00 0.00 0.00 2.57
354 355 3.489355 TGTTCATGAGGCTTTGTGTGAT 58.511 40.909 0.00 0.00 0.00 3.06
355 356 2.929641 TGTTCATGAGGCTTTGTGTGA 58.070 42.857 0.00 0.00 0.00 3.58
356 357 3.181488 TGTTGTTCATGAGGCTTTGTGTG 60.181 43.478 0.00 0.00 0.00 3.82
357 358 3.023119 TGTTGTTCATGAGGCTTTGTGT 58.977 40.909 0.00 0.00 0.00 3.72
358 359 3.067180 AGTGTTGTTCATGAGGCTTTGTG 59.933 43.478 0.00 0.00 0.00 3.33
359 360 3.290710 AGTGTTGTTCATGAGGCTTTGT 58.709 40.909 0.00 0.00 0.00 2.83
360 361 3.996150 AGTGTTGTTCATGAGGCTTTG 57.004 42.857 0.00 0.00 0.00 2.77
361 362 3.491447 GCAAGTGTTGTTCATGAGGCTTT 60.491 43.478 0.00 0.00 0.00 3.51
362 363 2.035066 GCAAGTGTTGTTCATGAGGCTT 59.965 45.455 0.00 0.00 0.00 4.35
363 364 1.610522 GCAAGTGTTGTTCATGAGGCT 59.389 47.619 0.00 0.00 0.00 4.58
364 365 1.337703 TGCAAGTGTTGTTCATGAGGC 59.662 47.619 0.00 0.00 0.00 4.70
365 366 2.358582 TGTGCAAGTGTTGTTCATGAGG 59.641 45.455 0.00 0.00 0.00 3.86
366 367 3.181498 TGTGTGCAAGTGTTGTTCATGAG 60.181 43.478 0.00 0.00 0.00 2.90
367 368 2.751806 TGTGTGCAAGTGTTGTTCATGA 59.248 40.909 0.00 0.00 0.00 3.07
368 369 2.853594 GTGTGTGCAAGTGTTGTTCATG 59.146 45.455 0.00 0.00 0.00 3.07
369 370 2.491298 TGTGTGTGCAAGTGTTGTTCAT 59.509 40.909 0.00 0.00 0.00 2.57
370 371 1.882623 TGTGTGTGCAAGTGTTGTTCA 59.117 42.857 0.00 0.00 0.00 3.18
371 372 2.627863 TGTGTGTGCAAGTGTTGTTC 57.372 45.000 0.00 0.00 0.00 3.18
372 373 3.377346 TTTGTGTGTGCAAGTGTTGTT 57.623 38.095 0.00 0.00 0.00 2.83
373 374 3.316283 CTTTTGTGTGTGCAAGTGTTGT 58.684 40.909 0.00 0.00 0.00 3.32
374 375 2.092524 GCTTTTGTGTGTGCAAGTGTTG 59.907 45.455 0.00 0.00 0.00 3.33
375 376 2.288702 TGCTTTTGTGTGTGCAAGTGTT 60.289 40.909 0.00 0.00 32.12 3.32
376 377 1.271934 TGCTTTTGTGTGTGCAAGTGT 59.728 42.857 0.00 0.00 32.12 3.55
377 378 1.993542 TGCTTTTGTGTGTGCAAGTG 58.006 45.000 0.00 0.00 32.12 3.16
378 379 2.739885 TTGCTTTTGTGTGTGCAAGT 57.260 40.000 0.00 0.00 39.98 3.16
379 380 4.805192 AGTATTTGCTTTTGTGTGTGCAAG 59.195 37.500 0.00 0.00 44.52 4.01
380 381 4.753233 AGTATTTGCTTTTGTGTGTGCAA 58.247 34.783 0.00 0.00 42.60 4.08
381 382 4.383850 AGTATTTGCTTTTGTGTGTGCA 57.616 36.364 0.00 0.00 0.00 4.57
382 383 5.069485 CAAGTATTTGCTTTTGTGTGTGC 57.931 39.130 0.00 0.00 0.00 4.57
395 396 1.000827 TGCGTTGGGTGCAAGTATTTG 60.001 47.619 0.00 0.00 39.87 2.32
396 397 1.323412 TGCGTTGGGTGCAAGTATTT 58.677 45.000 0.00 0.00 39.87 1.40
397 398 1.323412 TTGCGTTGGGTGCAAGTATT 58.677 45.000 0.00 0.00 46.62 1.89
398 399 3.028916 TTGCGTTGGGTGCAAGTAT 57.971 47.368 0.00 0.00 46.62 2.12
399 400 4.561452 TTGCGTTGGGTGCAAGTA 57.439 50.000 0.00 0.00 46.62 2.24
403 404 1.140589 CTTGTTTGCGTTGGGTGCA 59.859 52.632 0.00 0.00 41.38 4.57
404 405 0.594796 CTCTTGTTTGCGTTGGGTGC 60.595 55.000 0.00 0.00 0.00 5.01
405 406 0.030638 CCTCTTGTTTGCGTTGGGTG 59.969 55.000 0.00 0.00 0.00 4.61
406 407 1.106944 CCCTCTTGTTTGCGTTGGGT 61.107 55.000 0.00 0.00 0.00 4.51
407 408 1.106944 ACCCTCTTGTTTGCGTTGGG 61.107 55.000 0.00 0.00 39.06 4.12
408 409 0.744281 AACCCTCTTGTTTGCGTTGG 59.256 50.000 0.00 0.00 0.00 3.77
409 410 1.134175 ACAACCCTCTTGTTTGCGTTG 59.866 47.619 0.00 0.00 37.27 4.10
410 411 1.470051 ACAACCCTCTTGTTTGCGTT 58.530 45.000 0.00 0.00 0.00 4.84
411 412 1.470051 AACAACCCTCTTGTTTGCGT 58.530 45.000 0.00 0.00 39.36 5.24
412 413 3.701532 TTAACAACCCTCTTGTTTGCG 57.298 42.857 3.91 0.00 42.10 4.85
413 414 5.195001 TGATTAACAACCCTCTTGTTTGC 57.805 39.130 3.91 0.00 42.10 3.68
426 427 4.822896 AGTAACCGCCAAGTTGATTAACAA 59.177 37.500 3.87 0.00 39.30 2.83
427 428 4.391155 AGTAACCGCCAAGTTGATTAACA 58.609 39.130 3.87 0.00 39.30 2.41
428 429 5.151389 CAAGTAACCGCCAAGTTGATTAAC 58.849 41.667 3.87 0.00 37.06 2.01
429 430 4.320641 GCAAGTAACCGCCAAGTTGATTAA 60.321 41.667 3.87 0.00 0.00 1.40
430 431 3.189702 GCAAGTAACCGCCAAGTTGATTA 59.810 43.478 3.87 0.00 0.00 1.75
431 432 2.030274 GCAAGTAACCGCCAAGTTGATT 60.030 45.455 3.87 0.00 0.00 2.57
432 433 1.539827 GCAAGTAACCGCCAAGTTGAT 59.460 47.619 3.87 0.00 0.00 2.57
433 434 0.948678 GCAAGTAACCGCCAAGTTGA 59.051 50.000 3.87 0.00 0.00 3.18
434 435 0.665835 TGCAAGTAACCGCCAAGTTG 59.334 50.000 0.00 0.00 0.00 3.16
435 436 1.336755 CTTGCAAGTAACCGCCAAGTT 59.663 47.619 18.65 0.00 0.00 2.66
436 437 0.951558 CTTGCAAGTAACCGCCAAGT 59.048 50.000 18.65 0.00 0.00 3.16
437 438 0.240945 CCTTGCAAGTAACCGCCAAG 59.759 55.000 24.35 1.81 0.00 3.61
438 439 0.179015 TCCTTGCAAGTAACCGCCAA 60.179 50.000 24.35 0.00 0.00 4.52
439 440 0.037590 ATCCTTGCAAGTAACCGCCA 59.962 50.000 24.35 0.00 0.00 5.69
440 441 1.173913 AATCCTTGCAAGTAACCGCC 58.826 50.000 24.35 0.00 0.00 6.13
441 442 4.428615 TTTAATCCTTGCAAGTAACCGC 57.571 40.909 24.35 0.00 0.00 5.68
442 443 6.436843 AGATTTAATCCTTGCAAGTAACCG 57.563 37.500 24.35 9.34 0.00 4.44
443 444 6.093633 ACGAGATTTAATCCTTGCAAGTAACC 59.906 38.462 24.35 10.84 0.00 2.85
444 445 7.073342 ACGAGATTTAATCCTTGCAAGTAAC 57.927 36.000 24.35 6.73 0.00 2.50
445 446 8.038944 ACTACGAGATTTAATCCTTGCAAGTAA 58.961 33.333 24.35 13.77 0.00 2.24
446 447 7.491372 CACTACGAGATTTAATCCTTGCAAGTA 59.509 37.037 24.35 10.26 0.00 2.24
447 448 6.313905 CACTACGAGATTTAATCCTTGCAAGT 59.686 38.462 24.35 9.39 0.00 3.16
448 449 6.238211 CCACTACGAGATTTAATCCTTGCAAG 60.238 42.308 19.93 19.93 0.00 4.01
449 450 5.584649 CCACTACGAGATTTAATCCTTGCAA 59.415 40.000 0.00 0.00 0.00 4.08
450 451 5.116180 CCACTACGAGATTTAATCCTTGCA 58.884 41.667 0.78 0.00 0.00 4.08
451 452 5.116882 ACCACTACGAGATTTAATCCTTGC 58.883 41.667 0.78 0.00 0.00 4.01
452 453 6.816640 TGAACCACTACGAGATTTAATCCTTG 59.183 38.462 0.78 0.00 0.00 3.61
453 454 6.817140 GTGAACCACTACGAGATTTAATCCTT 59.183 38.462 0.78 0.00 0.00 3.36
454 455 6.070995 TGTGAACCACTACGAGATTTAATCCT 60.071 38.462 0.78 0.00 35.11 3.24
455 456 6.103997 TGTGAACCACTACGAGATTTAATCC 58.896 40.000 0.78 0.00 35.11 3.01
456 457 7.331193 ACTTGTGAACCACTACGAGATTTAATC 59.669 37.037 0.00 0.00 35.11 1.75
457 458 7.159372 ACTTGTGAACCACTACGAGATTTAAT 58.841 34.615 0.00 0.00 35.11 1.40
458 459 6.518493 ACTTGTGAACCACTACGAGATTTAA 58.482 36.000 0.00 0.00 35.11 1.52
459 460 6.092955 ACTTGTGAACCACTACGAGATTTA 57.907 37.500 0.00 0.00 35.11 1.40
460 461 4.957296 ACTTGTGAACCACTACGAGATTT 58.043 39.130 0.00 0.00 35.11 2.17
461 462 4.602340 ACTTGTGAACCACTACGAGATT 57.398 40.909 0.00 0.00 35.11 2.40
462 463 4.380655 GCTACTTGTGAACCACTACGAGAT 60.381 45.833 0.00 0.00 35.11 2.75
463 464 3.057736 GCTACTTGTGAACCACTACGAGA 60.058 47.826 0.00 0.00 35.11 4.04
464 465 3.243336 GCTACTTGTGAACCACTACGAG 58.757 50.000 0.00 0.00 35.11 4.18
465 466 2.624364 TGCTACTTGTGAACCACTACGA 59.376 45.455 0.00 0.00 35.11 3.43
466 467 2.729882 GTGCTACTTGTGAACCACTACG 59.270 50.000 0.00 0.00 35.11 3.51
467 468 3.064931 GGTGCTACTTGTGAACCACTAC 58.935 50.000 0.00 0.00 35.11 2.73
468 469 2.038033 GGGTGCTACTTGTGAACCACTA 59.962 50.000 0.00 0.00 35.11 2.74
469 470 1.202770 GGGTGCTACTTGTGAACCACT 60.203 52.381 0.00 0.00 35.11 4.00
470 471 1.235724 GGGTGCTACTTGTGAACCAC 58.764 55.000 0.00 0.00 32.28 4.16
471 472 0.109723 GGGGTGCTACTTGTGAACCA 59.890 55.000 0.00 0.00 32.28 3.67
472 473 0.953960 CGGGGTGCTACTTGTGAACC 60.954 60.000 0.00 0.00 0.00 3.62
473 474 1.574702 GCGGGGTGCTACTTGTGAAC 61.575 60.000 0.00 0.00 41.73 3.18
474 475 1.302192 GCGGGGTGCTACTTGTGAA 60.302 57.895 0.00 0.00 41.73 3.18
475 476 2.345991 GCGGGGTGCTACTTGTGA 59.654 61.111 0.00 0.00 41.73 3.58
476 477 2.746277 GGCGGGGTGCTACTTGTG 60.746 66.667 0.00 0.00 45.43 3.33
477 478 2.465055 GAAGGCGGGGTGCTACTTGT 62.465 60.000 0.00 0.00 45.43 3.16
478 479 1.745489 GAAGGCGGGGTGCTACTTG 60.745 63.158 0.00 0.00 45.43 3.16
479 480 2.669240 GAAGGCGGGGTGCTACTT 59.331 61.111 0.00 0.00 45.43 2.24
480 481 3.771160 CGAAGGCGGGGTGCTACT 61.771 66.667 0.00 0.00 45.43 2.57
543 544 0.541863 GGTGAGTGGGATGTCGGAAT 59.458 55.000 0.00 0.00 0.00 3.01
545 546 1.987855 GGGTGAGTGGGATGTCGGA 60.988 63.158 0.00 0.00 0.00 4.55
556 557 2.363925 GCGTAGGGAGGGGTGAGT 60.364 66.667 0.00 0.00 0.00 3.41
563 564 4.208686 GTCGCAGGCGTAGGGAGG 62.209 72.222 13.83 0.00 40.74 4.30
609 625 2.125832 CGAAGCTTAACCCCGCGA 60.126 61.111 8.23 0.00 0.00 5.87
734 751 3.224324 GGAGACGGCGGCCTATGA 61.224 66.667 18.34 0.00 0.00 2.15
831 849 0.035439 CCCCGCAAGCTTCCTCTTTA 60.035 55.000 0.00 0.00 0.00 1.85
1181 1210 0.327924 CTCCATGGTGTAGTTGCCCA 59.672 55.000 12.58 0.00 0.00 5.36
1233 1262 0.930310 CGTTGGCATCCATAGACACG 59.070 55.000 0.00 0.00 31.53 4.49
1332 1362 1.883275 CCGAAGAGATCTATCCGTGCT 59.117 52.381 0.00 0.00 0.00 4.40
1411 1443 2.742053 CCACTTGGGTTTATCGTGTCAG 59.258 50.000 0.00 0.00 0.00 3.51
1451 1483 7.830739 AGGAACATAAAGAAATGCCACTTAAG 58.169 34.615 0.00 0.00 0.00 1.85
1452 1484 7.775053 AGGAACATAAAGAAATGCCACTTAA 57.225 32.000 0.00 0.00 0.00 1.85
1459 1491 6.691508 ACTTGGAAGGAACATAAAGAAATGC 58.308 36.000 0.00 0.00 0.00 3.56
1806 1855 4.505742 CCTCTAGGGCATATTTCCTTCACC 60.506 50.000 0.00 0.00 34.75 4.02
1902 1954 9.454859 TGTATTCACACATGTATTATGTTTCCA 57.545 29.630 0.00 0.00 0.00 3.53
1939 1991 5.511363 AGTAGAGGCATACTAGTGACACTT 58.489 41.667 14.50 0.00 34.21 3.16
1957 2009 6.997239 TGATTAACGAGCTAGTCAAGTAGA 57.003 37.500 0.00 0.00 0.00 2.59
1990 2042 6.777580 ACTCTTTGTTCATGGTTAGGAAACAT 59.222 34.615 0.00 0.00 37.34 2.71
1991 2043 6.126409 ACTCTTTGTTCATGGTTAGGAAACA 58.874 36.000 0.00 0.00 37.34 2.83
2010 2062 7.989416 TCCCGTTAATCAAATAACAACTCTT 57.011 32.000 0.00 0.00 35.89 2.85
2011 2063 7.827236 TGATCCCGTTAATCAAATAACAACTCT 59.173 33.333 0.00 0.00 35.89 3.24
2019 2071 8.690203 AATGATGTGATCCCGTTAATCAAATA 57.310 30.769 0.00 0.00 32.39 1.40
2048 2100 5.128205 GGGTCATGTCAATCAGATCATTCA 58.872 41.667 0.00 0.00 0.00 2.57
2056 2108 3.623703 TGGAATGGGTCATGTCAATCAG 58.376 45.455 0.00 0.00 0.00 2.90
2065 2117 4.141181 TGCTAAGCTAATGGAATGGGTCAT 60.141 41.667 0.00 0.00 0.00 3.06
2066 2118 3.201930 TGCTAAGCTAATGGAATGGGTCA 59.798 43.478 0.00 0.00 0.00 4.02
2077 2129 4.357918 AATGATCGGGTGCTAAGCTAAT 57.642 40.909 0.00 0.00 0.00 1.73
2090 2142 7.017645 GCAATAGCAACATACTAAATGATCGG 58.982 38.462 0.00 0.00 41.58 4.18
2091 2143 7.800767 AGCAATAGCAACATACTAAATGATCG 58.199 34.615 0.00 0.00 45.49 3.69
2171 2223 0.818040 ACACAAAGTGTTCCTCCGGC 60.818 55.000 0.00 0.00 45.08 6.13
2212 2264 4.971924 AGAGCTCCTTTATAATCACCCAGT 59.028 41.667 10.93 0.00 0.00 4.00
2217 2269 6.926272 CACCTGTAGAGCTCCTTTATAATCAC 59.074 42.308 10.93 0.00 0.00 3.06
2245 2297 3.226777 CAACCCAACATGTACCTTTGGA 58.773 45.455 13.97 0.00 42.17 3.53
2247 2299 2.288763 GCCAACCCAACATGTACCTTTG 60.289 50.000 0.00 1.04 0.00 2.77
2248 2300 1.967779 GCCAACCCAACATGTACCTTT 59.032 47.619 0.00 0.00 0.00 3.11
2262 2314 3.493503 CCTAATCTCGAAATACGCCAACC 59.506 47.826 0.00 0.00 42.26 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.