Multiple sequence alignment - TraesCS2A01G568500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G568500 chr2A 100.000 2279 0 0 1 2279 766841107 766843385 0.000000e+00 4209.0
1 TraesCS2A01G568500 chr2A 94.088 1776 95 6 1 1769 3768475 3766703 0.000000e+00 2689.0
2 TraesCS2A01G568500 chr2A 86.207 87 12 0 2190 2276 9903824 9903910 6.700000e-16 95.3
3 TraesCS2A01G568500 chr3D 97.627 1770 36 3 1 1769 104033816 104035580 0.000000e+00 3031.0
4 TraesCS2A01G568500 chr1A 97.682 1769 24 1 1 1769 556821263 556819512 0.000000e+00 3024.0
5 TraesCS2A01G568500 chr1A 97.569 1769 26 1 1 1769 556832825 556834576 0.000000e+00 3013.0
6 TraesCS2A01G568500 chr1A 97.333 1762 27 3 1 1762 553064071 553065812 0.000000e+00 2976.0
7 TraesCS2A01G568500 chr1A 96.898 1773 30 5 1 1772 555945437 555943689 0.000000e+00 2946.0
8 TraesCS2A01G568500 chr1A 93.893 1490 82 3 1 1483 8024281 8025768 0.000000e+00 2239.0
9 TraesCS2A01G568500 chr7A 97.569 1769 23 3 1 1769 589766131 589764383 0.000000e+00 3011.0
10 TraesCS2A01G568500 chr7A 95.312 128 6 0 2149 2276 643602862 643602989 1.070000e-48 204.0
11 TraesCS2A01G568500 chr4A 93.525 1776 105 4 1 1769 16991517 16993289 0.000000e+00 2634.0
12 TraesCS2A01G568500 chr5D 92.624 1776 111 5 1 1769 26675621 26677383 0.000000e+00 2536.0
13 TraesCS2A01G568500 chr6B 93.158 1637 102 4 140 1769 479297683 479299316 0.000000e+00 2394.0
14 TraesCS2A01G568500 chr6A 92.115 1116 78 4 661 1769 561235519 561236631 0.000000e+00 1565.0
15 TraesCS2A01G568500 chr6A 87.800 541 56 4 1236 1769 40741963 40741426 1.920000e-175 625.0
16 TraesCS2A01G568500 chr6A 87.800 541 57 3 1236 1769 58609187 58609725 1.920000e-175 625.0
17 TraesCS2A01G568500 chr6A 93.355 301 20 0 1853 2153 3636625 3636325 1.610000e-121 446.0
18 TraesCS2A01G568500 chr2B 90.678 708 57 4 1069 1769 175424419 175423714 0.000000e+00 933.0
19 TraesCS2A01G568500 chr2B 94.531 128 7 0 2149 2276 49470767 49470894 4.970000e-47 198.0
20 TraesCS2A01G568500 chr2B 86.207 87 12 0 2190 2276 780116167 780116253 6.700000e-16 95.3
21 TraesCS2A01G568500 chr2B 82.178 101 16 2 2181 2279 270224926 270224826 4.030000e-13 86.1
22 TraesCS2A01G568500 chr2B 83.333 90 15 0 2190 2279 270226087 270225998 1.450000e-12 84.2
23 TraesCS2A01G568500 chr1B 88.269 520 51 4 1257 1769 373111590 373111074 4.160000e-172 614.0
24 TraesCS2A01G568500 chr7D 85.357 280 32 2 1870 2149 550683375 550683645 4.790000e-72 281.0
25 TraesCS2A01G568500 chr2D 94.531 128 7 0 2149 2276 623419104 623419231 4.970000e-47 198.0
26 TraesCS2A01G568500 chr5A 93.130 131 9 0 2149 2279 465312882 465313012 2.310000e-45 193.0
27 TraesCS2A01G568500 chr5A 95.181 83 4 0 2197 2279 465311445 465311527 5.110000e-27 132.0
28 TraesCS2A01G568500 chr1D 93.750 96 5 1 1758 1853 335359733 335359827 2.360000e-30 143.0
29 TraesCS2A01G568500 chr3A 88.235 85 9 1 1770 1854 742954930 742955013 1.440000e-17 100.0
30 TraesCS2A01G568500 chr3B 85.882 85 8 3 1770 1854 820122748 820122828 1.120000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G568500 chr2A 766841107 766843385 2278 False 4209 4209 100.000 1 2279 1 chr2A.!!$F2 2278
1 TraesCS2A01G568500 chr2A 3766703 3768475 1772 True 2689 2689 94.088 1 1769 1 chr2A.!!$R1 1768
2 TraesCS2A01G568500 chr3D 104033816 104035580 1764 False 3031 3031 97.627 1 1769 1 chr3D.!!$F1 1768
3 TraesCS2A01G568500 chr1A 556819512 556821263 1751 True 3024 3024 97.682 1 1769 1 chr1A.!!$R2 1768
4 TraesCS2A01G568500 chr1A 556832825 556834576 1751 False 3013 3013 97.569 1 1769 1 chr1A.!!$F3 1768
5 TraesCS2A01G568500 chr1A 553064071 553065812 1741 False 2976 2976 97.333 1 1762 1 chr1A.!!$F2 1761
6 TraesCS2A01G568500 chr1A 555943689 555945437 1748 True 2946 2946 96.898 1 1772 1 chr1A.!!$R1 1771
7 TraesCS2A01G568500 chr1A 8024281 8025768 1487 False 2239 2239 93.893 1 1483 1 chr1A.!!$F1 1482
8 TraesCS2A01G568500 chr7A 589764383 589766131 1748 True 3011 3011 97.569 1 1769 1 chr7A.!!$R1 1768
9 TraesCS2A01G568500 chr4A 16991517 16993289 1772 False 2634 2634 93.525 1 1769 1 chr4A.!!$F1 1768
10 TraesCS2A01G568500 chr5D 26675621 26677383 1762 False 2536 2536 92.624 1 1769 1 chr5D.!!$F1 1768
11 TraesCS2A01G568500 chr6B 479297683 479299316 1633 False 2394 2394 93.158 140 1769 1 chr6B.!!$F1 1629
12 TraesCS2A01G568500 chr6A 561235519 561236631 1112 False 1565 1565 92.115 661 1769 1 chr6A.!!$F2 1108
13 TraesCS2A01G568500 chr6A 40741426 40741963 537 True 625 625 87.800 1236 1769 1 chr6A.!!$R2 533
14 TraesCS2A01G568500 chr6A 58609187 58609725 538 False 625 625 87.800 1236 1769 1 chr6A.!!$F1 533
15 TraesCS2A01G568500 chr2B 175423714 175424419 705 True 933 933 90.678 1069 1769 1 chr2B.!!$R1 700
16 TraesCS2A01G568500 chr1B 373111074 373111590 516 True 614 614 88.269 1257 1769 1 chr1B.!!$R1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 612 3.599343 TGCATCTTGTTTGACTATCGCT 58.401 40.909 0.0 0.0 0.0 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 2061 0.104855 ATGGGATCGATGTGGTCACG 59.895 55.0 0.54 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
430 433 4.460263 TGATGCACTTGGTAGTTTTGAGT 58.540 39.130 0.00 0.00 30.26 3.41
431 434 4.887071 TGATGCACTTGGTAGTTTTGAGTT 59.113 37.500 0.00 0.00 30.26 3.01
579 588 8.792830 TTTTTGATAAGTACAGAGATGAAGGG 57.207 34.615 0.00 0.00 0.00 3.95
603 612 3.599343 TGCATCTTGTTTGACTATCGCT 58.401 40.909 0.00 0.00 0.00 4.93
773 782 6.690194 AGTTGATATTGCAAATGTCTCTCC 57.310 37.500 1.71 0.00 0.00 3.71
1354 1370 1.279271 AGAAATGAGTCCGGGTGAAGG 59.721 52.381 0.00 0.00 0.00 3.46
1460 1478 8.947115 GGTAACACAAAAGATCTAAGTAGCAAT 58.053 33.333 0.00 0.00 0.00 3.56
1776 1814 4.066139 GCCAGCCCTGACCCCAAT 62.066 66.667 0.00 0.00 0.00 3.16
1777 1815 2.043652 CCAGCCCTGACCCCAATG 60.044 66.667 0.00 0.00 0.00 2.82
1778 1816 2.765969 CAGCCCTGACCCCAATGT 59.234 61.111 0.00 0.00 0.00 2.71
1779 1817 1.679977 CAGCCCTGACCCCAATGTG 60.680 63.158 0.00 0.00 0.00 3.21
1780 1818 2.162906 AGCCCTGACCCCAATGTGT 61.163 57.895 0.00 0.00 0.00 3.72
1781 1819 1.978617 GCCCTGACCCCAATGTGTG 60.979 63.158 0.00 0.00 0.00 3.82
1782 1820 1.460255 CCCTGACCCCAATGTGTGT 59.540 57.895 0.00 0.00 0.00 3.72
1783 1821 0.695924 CCCTGACCCCAATGTGTGTA 59.304 55.000 0.00 0.00 0.00 2.90
1784 1822 1.613255 CCCTGACCCCAATGTGTGTAC 60.613 57.143 0.00 0.00 0.00 2.90
1785 1823 1.613255 CCTGACCCCAATGTGTGTACC 60.613 57.143 0.00 0.00 0.00 3.34
1786 1824 1.073125 CTGACCCCAATGTGTGTACCA 59.927 52.381 0.00 0.00 0.00 3.25
1787 1825 1.707989 TGACCCCAATGTGTGTACCAT 59.292 47.619 0.00 0.00 0.00 3.55
1788 1826 2.091541 GACCCCAATGTGTGTACCATG 58.908 52.381 0.00 0.00 0.00 3.66
1789 1827 1.707989 ACCCCAATGTGTGTACCATGA 59.292 47.619 0.00 0.00 0.00 3.07
1790 1828 2.091541 CCCCAATGTGTGTACCATGAC 58.908 52.381 0.00 0.00 0.00 3.06
1791 1829 2.554124 CCCCAATGTGTGTACCATGACA 60.554 50.000 0.00 0.00 0.00 3.58
1792 1830 3.355378 CCCAATGTGTGTACCATGACAT 58.645 45.455 0.00 0.00 0.00 3.06
1793 1831 3.763360 CCCAATGTGTGTACCATGACATT 59.237 43.478 0.00 0.00 39.13 2.71
1794 1832 4.220382 CCCAATGTGTGTACCATGACATTT 59.780 41.667 5.67 0.00 37.01 2.32
1795 1833 5.162794 CCAATGTGTGTACCATGACATTTG 58.837 41.667 5.67 5.26 37.01 2.32
1796 1834 5.278907 CCAATGTGTGTACCATGACATTTGT 60.279 40.000 5.67 0.00 37.01 2.83
1797 1835 6.072230 CCAATGTGTGTACCATGACATTTGTA 60.072 38.462 5.67 0.00 37.01 2.41
1798 1836 7.362834 CCAATGTGTGTACCATGACATTTGTAT 60.363 37.037 5.67 0.00 37.01 2.29
1799 1837 7.701539 ATGTGTGTACCATGACATTTGTATT 57.298 32.000 0.00 0.00 0.00 1.89
1800 1838 7.517614 TGTGTGTACCATGACATTTGTATTT 57.482 32.000 0.00 0.00 0.00 1.40
1801 1839 7.589395 TGTGTGTACCATGACATTTGTATTTC 58.411 34.615 0.00 0.00 0.00 2.17
1802 1840 7.446931 TGTGTGTACCATGACATTTGTATTTCT 59.553 33.333 0.00 0.00 0.00 2.52
1803 1841 8.296713 GTGTGTACCATGACATTTGTATTTCTT 58.703 33.333 0.00 0.00 0.00 2.52
1804 1842 8.855110 TGTGTACCATGACATTTGTATTTCTTT 58.145 29.630 0.00 0.00 0.00 2.52
1805 1843 9.691362 GTGTACCATGACATTTGTATTTCTTTT 57.309 29.630 0.00 0.00 0.00 2.27
1810 1848 9.573133 CCATGACATTTGTATTTCTTTTACTCC 57.427 33.333 0.00 0.00 0.00 3.85
1832 1870 8.103935 ACTCCTTCTTAATATATTAAGGCAGCC 58.896 37.037 31.22 1.84 45.73 4.85
1833 1871 7.402862 TCCTTCTTAATATATTAAGGCAGCCC 58.597 38.462 31.22 0.00 45.73 5.19
1834 1872 7.018149 TCCTTCTTAATATATTAAGGCAGCCCA 59.982 37.037 31.22 16.29 45.73 5.36
1835 1873 7.669722 CCTTCTTAATATATTAAGGCAGCCCAA 59.330 37.037 31.22 20.50 45.73 4.12
1836 1874 7.996098 TCTTAATATATTAAGGCAGCCCAAC 57.004 36.000 31.22 0.00 45.73 3.77
1837 1875 7.755618 TCTTAATATATTAAGGCAGCCCAACT 58.244 34.615 31.22 0.00 45.73 3.16
1838 1876 7.665559 TCTTAATATATTAAGGCAGCCCAACTG 59.334 37.037 31.22 12.76 45.73 3.16
1845 1883 3.365265 CAGCCCAACTGCCGGTTC 61.365 66.667 1.90 0.00 40.19 3.62
1846 1884 4.660938 AGCCCAACTGCCGGTTCC 62.661 66.667 1.90 0.00 35.74 3.62
1847 1885 4.660938 GCCCAACTGCCGGTTCCT 62.661 66.667 1.90 0.00 35.74 3.36
1848 1886 2.359975 CCCAACTGCCGGTTCCTC 60.360 66.667 1.90 0.00 35.74 3.71
1849 1887 2.429930 CCAACTGCCGGTTCCTCA 59.570 61.111 1.90 0.00 35.74 3.86
1850 1888 1.228124 CCAACTGCCGGTTCCTCAA 60.228 57.895 1.90 0.00 35.74 3.02
1851 1889 0.821711 CCAACTGCCGGTTCCTCAAA 60.822 55.000 1.90 0.00 35.74 2.69
1852 1890 1.028905 CAACTGCCGGTTCCTCAAAA 58.971 50.000 1.90 0.00 35.74 2.44
1853 1891 1.407258 CAACTGCCGGTTCCTCAAAAA 59.593 47.619 1.90 0.00 35.74 1.94
1854 1892 1.029681 ACTGCCGGTTCCTCAAAAAC 58.970 50.000 1.90 0.00 0.00 2.43
1855 1893 1.318576 CTGCCGGTTCCTCAAAAACT 58.681 50.000 1.90 0.00 0.00 2.66
1856 1894 1.681264 CTGCCGGTTCCTCAAAAACTT 59.319 47.619 1.90 0.00 0.00 2.66
1857 1895 1.679153 TGCCGGTTCCTCAAAAACTTC 59.321 47.619 1.90 0.00 0.00 3.01
1858 1896 1.000607 GCCGGTTCCTCAAAAACTTCC 60.001 52.381 1.90 0.00 0.00 3.46
1859 1897 2.583143 CCGGTTCCTCAAAAACTTCCT 58.417 47.619 0.00 0.00 0.00 3.36
1860 1898 2.552743 CCGGTTCCTCAAAAACTTCCTC 59.447 50.000 0.00 0.00 0.00 3.71
1861 1899 2.223377 CGGTTCCTCAAAAACTTCCTCG 59.777 50.000 0.00 0.00 0.00 4.63
1862 1900 2.031069 GGTTCCTCAAAAACTTCCTCGC 60.031 50.000 0.00 0.00 0.00 5.03
1863 1901 1.508632 TCCTCAAAAACTTCCTCGCG 58.491 50.000 0.00 0.00 0.00 5.87
1864 1902 1.069513 TCCTCAAAAACTTCCTCGCGA 59.930 47.619 9.26 9.26 0.00 5.87
1865 1903 1.461127 CCTCAAAAACTTCCTCGCGAG 59.539 52.381 29.06 29.06 0.00 5.03
1866 1904 0.865769 TCAAAAACTTCCTCGCGAGC 59.134 50.000 30.49 0.00 0.00 5.03
1867 1905 0.868406 CAAAAACTTCCTCGCGAGCT 59.132 50.000 30.49 9.21 0.00 4.09
1868 1906 1.136224 CAAAAACTTCCTCGCGAGCTC 60.136 52.381 30.49 2.73 0.00 4.09
1869 1907 1.009389 AAAACTTCCTCGCGAGCTCG 61.009 55.000 31.37 31.37 43.27 5.03
1886 1924 3.747976 GCCCGCAACCACCATGAC 61.748 66.667 0.00 0.00 0.00 3.06
1887 1925 3.061848 CCCGCAACCACCATGACC 61.062 66.667 0.00 0.00 0.00 4.02
1888 1926 2.034066 CCGCAACCACCATGACCT 59.966 61.111 0.00 0.00 0.00 3.85
1889 1927 2.040544 CCGCAACCACCATGACCTC 61.041 63.158 0.00 0.00 0.00 3.85
1890 1928 2.390599 CGCAACCACCATGACCTCG 61.391 63.158 0.00 0.00 0.00 4.63
1891 1929 1.003839 GCAACCACCATGACCTCGA 60.004 57.895 0.00 0.00 0.00 4.04
1892 1930 1.298859 GCAACCACCATGACCTCGAC 61.299 60.000 0.00 0.00 0.00 4.20
1893 1931 0.321671 CAACCACCATGACCTCGACT 59.678 55.000 0.00 0.00 0.00 4.18
1894 1932 0.321671 AACCACCATGACCTCGACTG 59.678 55.000 0.00 0.00 0.00 3.51
1895 1933 1.448540 CCACCATGACCTCGACTGC 60.449 63.158 0.00 0.00 0.00 4.40
1896 1934 1.593787 CACCATGACCTCGACTGCT 59.406 57.895 0.00 0.00 0.00 4.24
1897 1935 0.459237 CACCATGACCTCGACTGCTC 60.459 60.000 0.00 0.00 0.00 4.26
1898 1936 0.613292 ACCATGACCTCGACTGCTCT 60.613 55.000 0.00 0.00 0.00 4.09
1899 1937 1.341089 ACCATGACCTCGACTGCTCTA 60.341 52.381 0.00 0.00 0.00 2.43
1900 1938 1.336440 CCATGACCTCGACTGCTCTAG 59.664 57.143 0.00 0.00 0.00 2.43
1901 1939 1.336440 CATGACCTCGACTGCTCTAGG 59.664 57.143 0.00 0.00 35.77 3.02
1902 1940 1.032657 TGACCTCGACTGCTCTAGGC 61.033 60.000 0.00 0.00 33.37 3.93
1903 1941 1.730451 GACCTCGACTGCTCTAGGCC 61.730 65.000 0.00 0.00 40.92 5.19
1904 1942 1.454847 CCTCGACTGCTCTAGGCCT 60.455 63.158 11.78 11.78 40.92 5.19
1905 1943 1.452145 CCTCGACTGCTCTAGGCCTC 61.452 65.000 9.68 0.00 40.92 4.70
1906 1944 1.781025 CTCGACTGCTCTAGGCCTCG 61.781 65.000 9.68 1.83 39.78 4.63
1907 1945 2.115911 CGACTGCTCTAGGCCTCGT 61.116 63.158 9.68 0.00 40.92 4.18
1908 1946 0.814410 CGACTGCTCTAGGCCTCGTA 60.814 60.000 9.68 0.00 40.92 3.43
1909 1947 0.664224 GACTGCTCTAGGCCTCGTAC 59.336 60.000 9.68 0.00 40.92 3.67
1910 1948 1.096386 ACTGCTCTAGGCCTCGTACG 61.096 60.000 9.68 9.53 40.92 3.67
1911 1949 2.332159 GCTCTAGGCCTCGTACGC 59.668 66.667 9.68 4.28 34.27 4.42
1912 1950 2.632541 CTCTAGGCCTCGTACGCG 59.367 66.667 9.68 3.53 39.92 6.01
1913 1951 1.886313 CTCTAGGCCTCGTACGCGA 60.886 63.158 15.93 0.00 45.79 5.87
1914 1952 2.103581 CTCTAGGCCTCGTACGCGAC 62.104 65.000 15.93 5.04 42.81 5.19
1915 1953 2.436469 TAGGCCTCGTACGCGACA 60.436 61.111 15.93 0.00 42.81 4.35
1916 1954 2.643764 CTAGGCCTCGTACGCGACAC 62.644 65.000 15.93 9.54 42.81 3.67
1945 1983 3.151022 CCGAGCCTCCCCTCACTC 61.151 72.222 0.00 0.00 0.00 3.51
1946 1984 3.151022 CGAGCCTCCCCTCACTCC 61.151 72.222 0.00 0.00 0.00 3.85
1947 1985 3.151022 GAGCCTCCCCTCACTCCG 61.151 72.222 0.00 0.00 0.00 4.63
1955 1993 4.803426 CCTCACTCCGCCGCTCAC 62.803 72.222 0.00 0.00 0.00 3.51
1956 1994 4.803426 CTCACTCCGCCGCTCACC 62.803 72.222 0.00 0.00 0.00 4.02
1958 1996 4.379243 CACTCCGCCGCTCACCTT 62.379 66.667 0.00 0.00 0.00 3.50
1959 1997 3.626924 ACTCCGCCGCTCACCTTT 61.627 61.111 0.00 0.00 0.00 3.11
1960 1998 2.280552 ACTCCGCCGCTCACCTTTA 61.281 57.895 0.00 0.00 0.00 1.85
1961 1999 1.810030 CTCCGCCGCTCACCTTTAC 60.810 63.158 0.00 0.00 0.00 2.01
1962 2000 3.186047 CCGCCGCTCACCTTTACG 61.186 66.667 0.00 0.00 0.00 3.18
1963 2001 2.431942 CGCCGCTCACCTTTACGT 60.432 61.111 0.00 0.00 0.00 3.57
1964 2002 2.726691 CGCCGCTCACCTTTACGTG 61.727 63.158 0.00 0.00 34.93 4.49
1965 2003 2.388232 GCCGCTCACCTTTACGTGG 61.388 63.158 0.00 0.00 34.36 4.94
1966 2004 2.388232 CCGCTCACCTTTACGTGGC 61.388 63.158 0.00 0.00 34.36 5.01
1967 2005 2.388232 CGCTCACCTTTACGTGGCC 61.388 63.158 0.00 0.00 34.36 5.36
1968 2006 1.003718 GCTCACCTTTACGTGGCCT 60.004 57.895 3.32 0.00 34.36 5.19
1969 2007 1.019805 GCTCACCTTTACGTGGCCTC 61.020 60.000 3.32 0.00 34.36 4.70
1970 2008 0.391263 CTCACCTTTACGTGGCCTCC 60.391 60.000 3.32 0.00 34.36 4.30
1971 2009 0.834687 TCACCTTTACGTGGCCTCCT 60.835 55.000 3.32 0.00 34.36 3.69
1972 2010 0.391263 CACCTTTACGTGGCCTCCTC 60.391 60.000 3.32 0.00 0.00 3.71
1973 2011 1.221021 CCTTTACGTGGCCTCCTCC 59.779 63.158 3.32 0.00 0.00 4.30
1974 2012 1.265454 CCTTTACGTGGCCTCCTCCT 61.265 60.000 3.32 0.00 0.00 3.69
1975 2013 0.175989 CTTTACGTGGCCTCCTCCTC 59.824 60.000 3.32 0.00 0.00 3.71
1976 2014 1.262640 TTTACGTGGCCTCCTCCTCC 61.263 60.000 3.32 0.00 0.00 4.30
1984 2022 3.003173 CTCCTCCTCCGGCCACAA 61.003 66.667 2.24 0.00 0.00 3.33
1985 2023 3.316573 CTCCTCCTCCGGCCACAAC 62.317 68.421 2.24 0.00 0.00 3.32
1986 2024 3.322466 CCTCCTCCGGCCACAACT 61.322 66.667 2.24 0.00 0.00 3.16
1987 2025 2.266055 CTCCTCCGGCCACAACTC 59.734 66.667 2.24 0.00 0.00 3.01
1988 2026 2.203788 TCCTCCGGCCACAACTCT 60.204 61.111 2.24 0.00 0.00 3.24
1989 2027 2.232298 CTCCTCCGGCCACAACTCTC 62.232 65.000 2.24 0.00 0.00 3.20
1990 2028 2.266055 CTCCGGCCACAACTCTCC 59.734 66.667 2.24 0.00 0.00 3.71
1991 2029 3.649277 CTCCGGCCACAACTCTCCG 62.649 68.421 2.24 0.00 41.41 4.63
1993 2031 4.003788 CGGCCACAACTCTCCGGT 62.004 66.667 2.24 0.00 38.35 5.28
1994 2032 2.642254 CGGCCACAACTCTCCGGTA 61.642 63.158 2.24 0.00 38.35 4.02
1995 2033 1.218316 GGCCACAACTCTCCGGTAG 59.782 63.158 0.00 2.82 0.00 3.18
1996 2034 1.448013 GCCACAACTCTCCGGTAGC 60.448 63.158 0.00 0.00 0.00 3.58
1997 2035 1.889530 GCCACAACTCTCCGGTAGCT 61.890 60.000 0.00 0.00 0.00 3.32
1998 2036 0.173708 CCACAACTCTCCGGTAGCTC 59.826 60.000 0.00 0.00 0.00 4.09
1999 2037 0.179161 CACAACTCTCCGGTAGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
2000 2038 1.226717 CAACTCTCCGGTAGCTCGC 60.227 63.158 0.00 0.00 0.00 5.03
2001 2039 1.378778 AACTCTCCGGTAGCTCGCT 60.379 57.895 0.00 0.00 0.00 4.93
2002 2040 1.658686 AACTCTCCGGTAGCTCGCTG 61.659 60.000 0.00 0.00 0.00 5.18
2003 2041 3.477224 CTCTCCGGTAGCTCGCTGC 62.477 68.421 0.00 0.00 43.29 5.25
2004 2042 4.577246 CTCCGGTAGCTCGCTGCC 62.577 72.222 15.00 15.00 43.94 4.85
2008 2046 2.590007 GGTAGCTCGCTGCCATGG 60.590 66.667 19.23 7.63 46.15 3.66
2009 2047 2.501128 GTAGCTCGCTGCCATGGA 59.499 61.111 18.40 0.00 44.23 3.41
2010 2048 1.884926 GTAGCTCGCTGCCATGGAC 60.885 63.158 18.40 7.64 44.23 4.02
2011 2049 3.430565 TAGCTCGCTGCCATGGACG 62.431 63.158 18.40 15.77 44.23 4.79
2012 2050 4.819761 GCTCGCTGCCATGGACGA 62.820 66.667 18.40 19.19 35.15 4.20
2013 2051 2.584418 CTCGCTGCCATGGACGAG 60.584 66.667 27.08 27.08 45.02 4.18
2014 2052 4.819761 TCGCTGCCATGGACGAGC 62.820 66.667 18.40 17.46 0.00 5.03
2033 2071 4.082523 CCCGAGCCGTGACCACAT 62.083 66.667 0.85 0.00 0.00 3.21
2034 2072 2.509336 CCGAGCCGTGACCACATC 60.509 66.667 0.85 0.00 0.00 3.06
2035 2073 2.880879 CGAGCCGTGACCACATCG 60.881 66.667 0.85 3.55 0.00 3.84
2036 2074 2.571757 GAGCCGTGACCACATCGA 59.428 61.111 0.85 0.00 0.00 3.59
2037 2075 1.141881 GAGCCGTGACCACATCGAT 59.858 57.895 0.00 0.00 0.00 3.59
2038 2076 0.872021 GAGCCGTGACCACATCGATC 60.872 60.000 0.00 0.00 0.00 3.69
2039 2077 1.883084 GCCGTGACCACATCGATCC 60.883 63.158 0.00 0.00 0.00 3.36
2040 2078 1.227263 CCGTGACCACATCGATCCC 60.227 63.158 0.00 0.00 0.00 3.85
2041 2079 1.515487 CGTGACCACATCGATCCCA 59.485 57.895 0.00 0.00 0.00 4.37
2042 2080 0.104855 CGTGACCACATCGATCCCAT 59.895 55.000 0.00 0.00 0.00 4.00
2043 2081 1.586422 GTGACCACATCGATCCCATG 58.414 55.000 0.00 0.00 0.00 3.66
2044 2082 1.138859 GTGACCACATCGATCCCATGA 59.861 52.381 0.00 0.00 0.00 3.07
2045 2083 1.138859 TGACCACATCGATCCCATGAC 59.861 52.381 0.00 0.00 0.00 3.06
2046 2084 0.469917 ACCACATCGATCCCATGACC 59.530 55.000 0.00 0.00 0.00 4.02
2047 2085 0.250467 CCACATCGATCCCATGACCC 60.250 60.000 0.00 0.00 0.00 4.46
2048 2086 0.250467 CACATCGATCCCATGACCCC 60.250 60.000 0.00 0.00 0.00 4.95
2049 2087 1.004560 CATCGATCCCATGACCCCG 60.005 63.158 0.00 0.00 0.00 5.73
2050 2088 2.883828 ATCGATCCCATGACCCCGC 61.884 63.158 0.00 0.00 0.00 6.13
2051 2089 4.626081 CGATCCCATGACCCCGCC 62.626 72.222 0.00 0.00 0.00 6.13
2052 2090 3.171388 GATCCCATGACCCCGCCT 61.171 66.667 0.00 0.00 0.00 5.52
2053 2091 3.171388 ATCCCATGACCCCGCCTC 61.171 66.667 0.00 0.00 0.00 4.70
2056 2094 4.181010 CCATGACCCCGCCTCCTG 62.181 72.222 0.00 0.00 0.00 3.86
2057 2095 3.083349 CATGACCCCGCCTCCTGA 61.083 66.667 0.00 0.00 0.00 3.86
2058 2096 2.765807 ATGACCCCGCCTCCTGAG 60.766 66.667 0.00 0.00 0.00 3.35
2064 2102 4.247380 CCGCCTCCTGAGCCCATC 62.247 72.222 0.00 0.00 0.00 3.51
2065 2103 3.160047 CGCCTCCTGAGCCCATCT 61.160 66.667 0.00 0.00 0.00 2.90
2066 2104 2.509916 GCCTCCTGAGCCCATCTG 59.490 66.667 0.00 0.00 0.00 2.90
2067 2105 3.117452 GCCTCCTGAGCCCATCTGG 62.117 68.421 0.00 0.00 45.96 3.86
2068 2106 1.692042 CCTCCTGAGCCCATCTGGT 60.692 63.158 0.00 0.00 45.09 4.00
2069 2107 1.694133 CCTCCTGAGCCCATCTGGTC 61.694 65.000 0.00 0.00 45.09 4.02
2070 2108 2.025767 CTCCTGAGCCCATCTGGTCG 62.026 65.000 0.00 0.00 45.09 4.79
2071 2109 2.202987 CTGAGCCCATCTGGTCGC 60.203 66.667 0.00 0.00 35.53 5.19
2072 2110 4.147449 TGAGCCCATCTGGTCGCG 62.147 66.667 0.00 0.00 35.53 5.87
2076 2114 4.899239 CCCATCTGGTCGCGCCTC 62.899 72.222 18.14 4.48 38.35 4.70
2077 2115 4.899239 CCATCTGGTCGCGCCTCC 62.899 72.222 18.14 12.96 38.35 4.30
2078 2116 3.842923 CATCTGGTCGCGCCTCCT 61.843 66.667 18.14 2.84 38.35 3.69
2079 2117 3.842923 ATCTGGTCGCGCCTCCTG 61.843 66.667 18.14 15.12 38.35 3.86
2081 2119 4.504916 CTGGTCGCGCCTCCTGAG 62.505 72.222 18.14 5.56 38.35 3.35
2088 2126 4.869440 CGCCTCCTGAGCAGCTCG 62.869 72.222 17.81 11.89 32.35 5.03
2089 2127 3.456365 GCCTCCTGAGCAGCTCGA 61.456 66.667 17.81 8.73 32.35 4.04
2090 2128 2.806929 CCTCCTGAGCAGCTCGAG 59.193 66.667 17.81 17.11 32.35 4.04
2091 2129 2.104729 CTCCTGAGCAGCTCGAGC 59.895 66.667 30.01 30.01 42.49 5.03
2092 2130 3.429080 CTCCTGAGCAGCTCGAGCC 62.429 68.421 32.94 19.13 43.38 4.70
2093 2131 4.527583 CCTGAGCAGCTCGAGCCC 62.528 72.222 32.94 23.61 43.38 5.19
2094 2132 4.527583 CTGAGCAGCTCGAGCCCC 62.528 72.222 32.94 23.24 43.38 5.80
2096 2134 4.527583 GAGCAGCTCGAGCCCCAG 62.528 72.222 32.94 20.84 43.38 4.45
2115 2153 4.840005 GCTGTACGCAGGGGCTCC 62.840 72.222 0.00 0.00 42.78 4.70
2116 2154 4.162690 CTGTACGCAGGGGCTCCC 62.163 72.222 0.00 0.00 45.90 4.30
2128 2166 4.816984 GCTCCCTCTCGTCCCCGA 62.817 72.222 0.00 0.00 41.73 5.14
2152 2190 4.648626 TGCCTGTGAGCAGTGCCC 62.649 66.667 12.58 0.00 41.02 5.36
2153 2191 4.648626 GCCTGTGAGCAGTGCCCA 62.649 66.667 12.58 2.33 41.02 5.36
2154 2192 2.670934 CCTGTGAGCAGTGCCCAC 60.671 66.667 21.73 21.73 41.02 4.61
2155 2193 2.429058 CTGTGAGCAGTGCCCACT 59.571 61.111 27.22 2.52 43.61 4.00
2156 2194 1.673477 CTGTGAGCAGTGCCCACTA 59.327 57.895 27.22 14.50 40.20 2.74
2157 2195 0.251354 CTGTGAGCAGTGCCCACTAT 59.749 55.000 27.22 1.31 40.20 2.12
2158 2196 0.250234 TGTGAGCAGTGCCCACTATC 59.750 55.000 27.22 11.53 40.20 2.08
2159 2197 0.462759 GTGAGCAGTGCCCACTATCC 60.463 60.000 21.31 0.00 40.20 2.59
2160 2198 0.909133 TGAGCAGTGCCCACTATCCA 60.909 55.000 12.58 0.00 40.20 3.41
2161 2199 0.462759 GAGCAGTGCCCACTATCCAC 60.463 60.000 12.58 0.00 40.20 4.02
2162 2200 1.815421 GCAGTGCCCACTATCCACG 60.815 63.158 2.85 0.00 40.20 4.94
2163 2201 1.815421 CAGTGCCCACTATCCACGC 60.815 63.158 0.00 0.00 40.20 5.34
2164 2202 2.267642 GTGCCCACTATCCACGCA 59.732 61.111 0.00 0.00 0.00 5.24
2165 2203 2.106683 GTGCCCACTATCCACGCAC 61.107 63.158 0.00 0.00 42.57 5.34
2166 2204 2.890474 GCCCACTATCCACGCACG 60.890 66.667 0.00 0.00 0.00 5.34
2167 2205 2.890474 CCCACTATCCACGCACGC 60.890 66.667 0.00 0.00 0.00 5.34
2168 2206 2.125713 CCACTATCCACGCACGCA 60.126 61.111 0.00 0.00 0.00 5.24
2169 2207 2.452813 CCACTATCCACGCACGCAC 61.453 63.158 0.00 0.00 0.00 5.34
2170 2208 2.506217 ACTATCCACGCACGCACG 60.506 61.111 0.00 0.00 39.50 5.34
2171 2209 3.913573 CTATCCACGCACGCACGC 61.914 66.667 0.00 0.00 36.19 5.34
2172 2210 4.726351 TATCCACGCACGCACGCA 62.726 61.111 0.00 0.00 36.19 5.24
2176 2214 3.697444 CACGCACGCACGCACTAA 61.697 61.111 0.00 0.00 36.19 2.24
2177 2215 3.698463 ACGCACGCACGCACTAAC 61.698 61.111 0.00 0.00 36.19 2.34
2178 2216 3.403057 CGCACGCACGCACTAACT 61.403 61.111 0.00 0.00 0.00 2.24
2179 2217 2.170985 GCACGCACGCACTAACTG 59.829 61.111 0.00 0.00 0.00 3.16
2180 2218 2.307309 GCACGCACGCACTAACTGA 61.307 57.895 0.00 0.00 0.00 3.41
2181 2219 1.626654 GCACGCACGCACTAACTGAT 61.627 55.000 0.00 0.00 0.00 2.90
2182 2220 0.366871 CACGCACGCACTAACTGATC 59.633 55.000 0.00 0.00 0.00 2.92
2183 2221 1.071019 ACGCACGCACTAACTGATCG 61.071 55.000 0.00 0.00 0.00 3.69
2184 2222 0.796870 CGCACGCACTAACTGATCGA 60.797 55.000 0.00 0.00 0.00 3.59
2185 2223 0.640768 GCACGCACTAACTGATCGAC 59.359 55.000 0.00 0.00 0.00 4.20
2186 2224 1.269166 CACGCACTAACTGATCGACC 58.731 55.000 0.00 0.00 0.00 4.79
2187 2225 1.135373 CACGCACTAACTGATCGACCT 60.135 52.381 0.00 0.00 0.00 3.85
2188 2226 2.096980 CACGCACTAACTGATCGACCTA 59.903 50.000 0.00 0.00 0.00 3.08
2189 2227 2.355132 ACGCACTAACTGATCGACCTAG 59.645 50.000 0.00 0.00 0.00 3.02
2190 2228 2.733517 GCACTAACTGATCGACCTAGC 58.266 52.381 0.00 0.00 0.00 3.42
2191 2229 2.099263 GCACTAACTGATCGACCTAGCA 59.901 50.000 0.00 0.00 0.00 3.49
2192 2230 3.243569 GCACTAACTGATCGACCTAGCAT 60.244 47.826 0.00 0.00 0.00 3.79
2193 2231 4.294232 CACTAACTGATCGACCTAGCATG 58.706 47.826 0.00 0.00 0.00 4.06
2194 2232 2.231215 AACTGATCGACCTAGCATGC 57.769 50.000 10.51 10.51 0.00 4.06
2195 2233 1.114627 ACTGATCGACCTAGCATGCA 58.885 50.000 21.98 5.01 0.00 3.96
2196 2234 1.202463 ACTGATCGACCTAGCATGCAC 60.202 52.381 21.98 4.73 0.00 4.57
2197 2235 1.068281 CTGATCGACCTAGCATGCACT 59.932 52.381 21.98 1.90 0.00 4.40
2198 2236 2.294512 CTGATCGACCTAGCATGCACTA 59.705 50.000 21.98 3.21 0.00 2.74
2199 2237 2.693074 TGATCGACCTAGCATGCACTAA 59.307 45.455 21.98 0.93 0.00 2.24
2200 2238 2.579207 TCGACCTAGCATGCACTAAC 57.421 50.000 21.98 7.27 0.00 2.34
2201 2239 1.136305 TCGACCTAGCATGCACTAACC 59.864 52.381 21.98 3.26 0.00 2.85
2202 2240 1.134818 CGACCTAGCATGCACTAACCA 60.135 52.381 21.98 0.00 0.00 3.67
2203 2241 2.280628 GACCTAGCATGCACTAACCAC 58.719 52.381 21.98 0.00 0.00 4.16
2204 2242 1.909302 ACCTAGCATGCACTAACCACT 59.091 47.619 21.98 0.00 0.00 4.00
2205 2243 3.104512 ACCTAGCATGCACTAACCACTA 58.895 45.455 21.98 0.00 0.00 2.74
2206 2244 3.517901 ACCTAGCATGCACTAACCACTAA 59.482 43.478 21.98 0.00 0.00 2.24
2207 2245 4.122776 CCTAGCATGCACTAACCACTAAG 58.877 47.826 21.98 0.00 0.00 2.18
2208 2246 2.359900 AGCATGCACTAACCACTAAGC 58.640 47.619 21.98 0.00 0.00 3.09
2209 2247 1.401905 GCATGCACTAACCACTAAGCC 59.598 52.381 14.21 0.00 0.00 4.35
2210 2248 2.710377 CATGCACTAACCACTAAGCCA 58.290 47.619 0.00 0.00 0.00 4.75
2211 2249 2.178912 TGCACTAACCACTAAGCCAC 57.821 50.000 0.00 0.00 0.00 5.01
2212 2250 1.418264 TGCACTAACCACTAAGCCACA 59.582 47.619 0.00 0.00 0.00 4.17
2213 2251 2.039746 TGCACTAACCACTAAGCCACAT 59.960 45.455 0.00 0.00 0.00 3.21
2214 2252 2.420022 GCACTAACCACTAAGCCACATG 59.580 50.000 0.00 0.00 0.00 3.21
2215 2253 2.420022 CACTAACCACTAAGCCACATGC 59.580 50.000 0.00 0.00 41.71 4.06
2216 2254 2.039746 ACTAACCACTAAGCCACATGCA 59.960 45.455 0.00 0.00 44.83 3.96
2217 2255 1.247567 AACCACTAAGCCACATGCAC 58.752 50.000 0.00 0.00 44.83 4.57
2218 2256 0.955428 ACCACTAAGCCACATGCACG 60.955 55.000 0.00 0.00 44.83 5.34
2219 2257 1.135315 CACTAAGCCACATGCACGC 59.865 57.895 0.00 0.00 44.83 5.34
2220 2258 1.302431 ACTAAGCCACATGCACGCA 60.302 52.632 0.00 0.00 44.83 5.24
2221 2259 0.888736 ACTAAGCCACATGCACGCAA 60.889 50.000 0.00 0.00 44.83 4.85
2222 2260 0.454957 CTAAGCCACATGCACGCAAC 60.455 55.000 0.00 0.00 44.83 4.17
2223 2261 2.181372 TAAGCCACATGCACGCAACG 62.181 55.000 0.00 0.00 44.83 4.10
2236 2274 4.988598 CAACGCCGCACCTCCACT 62.989 66.667 0.00 0.00 0.00 4.00
2237 2275 4.681978 AACGCCGCACCTCCACTC 62.682 66.667 0.00 0.00 0.00 3.51
2239 2277 4.379243 CGCCGCACCTCCACTCTT 62.379 66.667 0.00 0.00 0.00 2.85
2240 2278 2.743928 GCCGCACCTCCACTCTTG 60.744 66.667 0.00 0.00 0.00 3.02
2241 2279 2.743928 CCGCACCTCCACTCTTGC 60.744 66.667 0.00 0.00 0.00 4.01
2242 2280 2.345244 CGCACCTCCACTCTTGCT 59.655 61.111 0.00 0.00 32.56 3.91
2243 2281 1.591703 CGCACCTCCACTCTTGCTA 59.408 57.895 0.00 0.00 32.56 3.49
2244 2282 0.459237 CGCACCTCCACTCTTGCTAG 60.459 60.000 0.00 0.00 32.56 3.42
2245 2283 0.742635 GCACCTCCACTCTTGCTAGC 60.743 60.000 8.10 8.10 32.00 3.42
2246 2284 0.107945 CACCTCCACTCTTGCTAGCC 60.108 60.000 13.29 0.00 0.00 3.93
2247 2285 1.268283 ACCTCCACTCTTGCTAGCCC 61.268 60.000 13.29 0.00 0.00 5.19
2248 2286 1.142748 CTCCACTCTTGCTAGCCCG 59.857 63.158 13.29 2.89 0.00 6.13
2249 2287 2.512515 CCACTCTTGCTAGCCCGC 60.513 66.667 13.29 0.00 0.00 6.13
2250 2288 2.512515 CACTCTTGCTAGCCCGCC 60.513 66.667 13.29 0.00 0.00 6.13
2251 2289 3.787001 ACTCTTGCTAGCCCGCCC 61.787 66.667 13.29 0.00 0.00 6.13
2252 2290 3.785859 CTCTTGCTAGCCCGCCCA 61.786 66.667 13.29 0.00 0.00 5.36
2253 2291 3.326578 TCTTGCTAGCCCGCCCAA 61.327 61.111 13.29 0.00 0.00 4.12
2254 2292 2.124151 CTTGCTAGCCCGCCCAAT 60.124 61.111 13.29 0.00 0.00 3.16
2255 2293 2.124320 TTGCTAGCCCGCCCAATC 60.124 61.111 13.29 0.00 0.00 2.67
2256 2294 2.891941 CTTGCTAGCCCGCCCAATCA 62.892 60.000 13.29 0.00 0.00 2.57
2257 2295 2.592861 GCTAGCCCGCCCAATCAG 60.593 66.667 2.29 0.00 0.00 2.90
2258 2296 2.592861 CTAGCCCGCCCAATCAGC 60.593 66.667 0.00 0.00 0.00 4.26
2259 2297 3.405093 CTAGCCCGCCCAATCAGCA 62.405 63.158 0.00 0.00 0.00 4.41
2260 2298 3.697439 TAGCCCGCCCAATCAGCAC 62.697 63.158 0.00 0.00 0.00 4.40
2265 2303 3.142838 GCCCAATCAGCACGCCAT 61.143 61.111 0.00 0.00 0.00 4.40
2266 2304 2.802792 CCCAATCAGCACGCCATG 59.197 61.111 0.00 0.00 0.00 3.66
2267 2305 2.777972 CCCAATCAGCACGCCATGG 61.778 63.158 7.63 7.63 0.00 3.66
2268 2306 2.103538 CAATCAGCACGCCATGGC 59.896 61.111 27.67 27.67 37.85 4.40
2269 2307 3.142838 AATCAGCACGCCATGGCC 61.143 61.111 30.79 17.04 37.98 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 173 7.903995 ATAAATTCGTTGCACAATTCCAAAT 57.096 28.000 0.00 0.00 0.00 2.32
257 260 6.594159 CCGAGTATTAGACAAACCTTTCACAT 59.406 38.462 0.00 0.00 0.00 3.21
430 433 5.703130 GCCAAATAACCATGCCAAGTAAAAA 59.297 36.000 0.00 0.00 0.00 1.94
431 434 5.221722 TGCCAAATAACCATGCCAAGTAAAA 60.222 36.000 0.00 0.00 0.00 1.52
579 588 4.554973 GCGATAGTCAAACAAGATGCAAAC 59.445 41.667 0.00 0.00 39.35 2.93
603 612 5.192927 CCCATATCAACTGCAAGACCTTTA 58.807 41.667 0.00 0.00 37.43 1.85
750 759 5.295292 CGGAGAGACATTTGCAATATCAACT 59.705 40.000 0.00 2.78 0.00 3.16
773 782 9.374960 CTTTGAGTTCTTTGAATCTAGTTTTCG 57.625 33.333 0.00 0.00 0.00 3.46
1360 1376 2.655090 TTGGCCATGTTCTTCACTCA 57.345 45.000 6.09 0.00 0.00 3.41
1546 1564 9.820229 GTAATGAAATGATGTAGTTCGACAAAA 57.180 29.630 0.00 0.00 36.20 2.44
1697 1734 2.696187 GGCCCTTGTGTTTACTCCAAAA 59.304 45.455 0.00 0.00 0.00 2.44
1762 1800 2.162906 ACACATTGGGGTCAGGGCT 61.163 57.895 0.00 0.00 0.00 5.19
1769 1807 7.754719 AATGTCATGGTACACACATTGGGGT 62.755 44.000 7.24 0.00 46.85 4.95
1784 1822 9.573133 GGAGTAAAAGAAATACAAATGTCATGG 57.427 33.333 0.00 0.00 0.00 3.66
1812 1850 7.665559 CAGTTGGGCTGCCTTAATATATTAAGA 59.334 37.037 32.91 19.98 43.09 2.10
1813 1851 7.820648 CAGTTGGGCTGCCTTAATATATTAAG 58.179 38.462 27.77 27.77 41.03 1.85
1814 1852 7.759489 CAGTTGGGCTGCCTTAATATATTAA 57.241 36.000 19.68 15.47 38.52 1.40
1829 1867 4.660938 GGAACCGGCAGTTGGGCT 62.661 66.667 0.00 0.00 39.40 5.19
1830 1868 4.660938 AGGAACCGGCAGTTGGGC 62.661 66.667 0.00 0.00 39.40 5.36
1831 1869 2.359975 GAGGAACCGGCAGTTGGG 60.360 66.667 0.00 0.00 39.40 4.12
1832 1870 0.821711 TTTGAGGAACCGGCAGTTGG 60.822 55.000 0.00 0.00 39.40 3.77
1833 1871 1.028905 TTTTGAGGAACCGGCAGTTG 58.971 50.000 0.00 0.00 39.40 3.16
1834 1872 1.407618 GTTTTTGAGGAACCGGCAGTT 59.592 47.619 0.00 0.00 43.07 3.16
1835 1873 1.029681 GTTTTTGAGGAACCGGCAGT 58.970 50.000 0.00 0.00 0.00 4.40
1836 1874 1.318576 AGTTTTTGAGGAACCGGCAG 58.681 50.000 0.00 0.00 0.00 4.85
1837 1875 1.679153 GAAGTTTTTGAGGAACCGGCA 59.321 47.619 0.00 0.00 0.00 5.69
1838 1876 1.000607 GGAAGTTTTTGAGGAACCGGC 60.001 52.381 0.00 0.00 0.00 6.13
1839 1877 2.552743 GAGGAAGTTTTTGAGGAACCGG 59.447 50.000 0.00 0.00 0.00 5.28
1840 1878 2.223377 CGAGGAAGTTTTTGAGGAACCG 59.777 50.000 0.00 0.00 0.00 4.44
1841 1879 2.031069 GCGAGGAAGTTTTTGAGGAACC 60.031 50.000 0.00 0.00 0.00 3.62
1842 1880 2.349532 CGCGAGGAAGTTTTTGAGGAAC 60.350 50.000 0.00 0.00 0.00 3.62
1843 1881 1.871039 CGCGAGGAAGTTTTTGAGGAA 59.129 47.619 0.00 0.00 0.00 3.36
1844 1882 1.069513 TCGCGAGGAAGTTTTTGAGGA 59.930 47.619 3.71 0.00 0.00 3.71
1845 1883 1.461127 CTCGCGAGGAAGTTTTTGAGG 59.539 52.381 28.40 0.00 0.00 3.86
1846 1884 1.136224 GCTCGCGAGGAAGTTTTTGAG 60.136 52.381 35.10 8.51 0.00 3.02
1847 1885 0.865769 GCTCGCGAGGAAGTTTTTGA 59.134 50.000 35.10 0.00 0.00 2.69
1848 1886 0.868406 AGCTCGCGAGGAAGTTTTTG 59.132 50.000 35.10 9.27 0.00 2.44
1849 1887 1.149148 GAGCTCGCGAGGAAGTTTTT 58.851 50.000 35.10 0.27 0.00 1.94
1850 1888 1.009389 CGAGCTCGCGAGGAAGTTTT 61.009 55.000 35.10 2.70 0.00 2.43
1851 1889 1.444553 CGAGCTCGCGAGGAAGTTT 60.445 57.895 35.10 5.19 0.00 2.66
1852 1890 2.179517 CGAGCTCGCGAGGAAGTT 59.820 61.111 35.10 10.36 0.00 2.66
1869 1907 3.747976 GTCATGGTGGTTGCGGGC 61.748 66.667 0.00 0.00 0.00 6.13
1870 1908 3.061848 GGTCATGGTGGTTGCGGG 61.062 66.667 0.00 0.00 0.00 6.13
1871 1909 2.034066 AGGTCATGGTGGTTGCGG 59.966 61.111 0.00 0.00 0.00 5.69
1872 1910 2.390599 CGAGGTCATGGTGGTTGCG 61.391 63.158 0.00 0.00 0.00 4.85
1873 1911 1.003839 TCGAGGTCATGGTGGTTGC 60.004 57.895 0.00 0.00 0.00 4.17
1874 1912 0.321671 AGTCGAGGTCATGGTGGTTG 59.678 55.000 0.00 0.00 0.00 3.77
1875 1913 0.321671 CAGTCGAGGTCATGGTGGTT 59.678 55.000 0.00 0.00 0.00 3.67
1876 1914 1.975327 CAGTCGAGGTCATGGTGGT 59.025 57.895 0.00 0.00 0.00 4.16
1877 1915 1.448540 GCAGTCGAGGTCATGGTGG 60.449 63.158 0.00 0.00 0.00 4.61
1878 1916 0.459237 GAGCAGTCGAGGTCATGGTG 60.459 60.000 0.00 0.00 36.11 4.17
1879 1917 0.613292 AGAGCAGTCGAGGTCATGGT 60.613 55.000 6.63 0.00 38.44 3.55
1880 1918 1.336440 CTAGAGCAGTCGAGGTCATGG 59.664 57.143 6.63 0.00 38.44 3.66
1881 1919 1.336440 CCTAGAGCAGTCGAGGTCATG 59.664 57.143 6.63 0.00 40.00 3.07
1882 1920 1.686355 CCTAGAGCAGTCGAGGTCAT 58.314 55.000 6.63 0.00 40.00 3.06
1883 1921 1.032657 GCCTAGAGCAGTCGAGGTCA 61.033 60.000 6.63 0.00 45.20 4.02
1884 1922 1.730451 GGCCTAGAGCAGTCGAGGTC 61.730 65.000 0.00 0.00 45.20 3.85
1885 1923 1.755008 GGCCTAGAGCAGTCGAGGT 60.755 63.158 0.00 0.00 45.20 3.85
1886 1924 1.452145 GAGGCCTAGAGCAGTCGAGG 61.452 65.000 4.42 0.00 45.97 4.63
1887 1925 1.781025 CGAGGCCTAGAGCAGTCGAG 61.781 65.000 4.42 0.00 46.90 4.04
1888 1926 1.820056 CGAGGCCTAGAGCAGTCGA 60.820 63.158 4.42 0.00 46.90 4.20
1889 1927 2.718731 CGAGGCCTAGAGCAGTCG 59.281 66.667 4.42 0.00 46.50 4.18
1890 1928 0.664224 GTACGAGGCCTAGAGCAGTC 59.336 60.000 20.86 0.00 46.50 3.51
1891 1929 1.096386 CGTACGAGGCCTAGAGCAGT 61.096 60.000 20.86 9.02 46.50 4.40
1892 1930 1.649815 CGTACGAGGCCTAGAGCAG 59.350 63.158 20.86 4.12 46.50 4.24
1893 1931 2.478890 GCGTACGAGGCCTAGAGCA 61.479 63.158 21.65 1.14 46.50 4.26
1894 1932 2.332159 GCGTACGAGGCCTAGAGC 59.668 66.667 21.65 16.72 42.60 4.09
1895 1933 1.886313 TCGCGTACGAGGCCTAGAG 60.886 63.158 21.65 10.33 45.12 2.43
1896 1934 2.187685 TCGCGTACGAGGCCTAGA 59.812 61.111 21.65 0.00 45.12 2.43
1928 1966 3.151022 GAGTGAGGGGAGGCTCGG 61.151 72.222 8.69 0.00 0.00 4.63
1929 1967 3.151022 GGAGTGAGGGGAGGCTCG 61.151 72.222 8.69 0.00 0.00 5.03
1930 1968 3.151022 CGGAGTGAGGGGAGGCTC 61.151 72.222 5.78 5.78 0.00 4.70
1938 1976 4.803426 GTGAGCGGCGGAGTGAGG 62.803 72.222 9.78 0.00 0.00 3.86
1939 1977 4.803426 GGTGAGCGGCGGAGTGAG 62.803 72.222 9.78 0.00 0.00 3.51
1941 1979 2.501223 TAAAGGTGAGCGGCGGAGTG 62.501 60.000 9.78 0.00 0.00 3.51
1942 1980 2.280552 TAAAGGTGAGCGGCGGAGT 61.281 57.895 9.78 0.00 0.00 3.85
1943 1981 1.810030 GTAAAGGTGAGCGGCGGAG 60.810 63.158 9.78 0.00 0.00 4.63
1944 1982 2.263540 GTAAAGGTGAGCGGCGGA 59.736 61.111 9.78 0.00 0.00 5.54
1945 1983 3.186047 CGTAAAGGTGAGCGGCGG 61.186 66.667 9.78 0.00 0.00 6.13
1946 1984 2.431942 ACGTAAAGGTGAGCGGCG 60.432 61.111 0.51 0.51 0.00 6.46
1947 1985 2.388232 CCACGTAAAGGTGAGCGGC 61.388 63.158 4.44 0.00 40.38 6.53
1948 1986 2.388232 GCCACGTAAAGGTGAGCGG 61.388 63.158 4.44 0.00 40.38 5.52
1949 1987 2.388232 GGCCACGTAAAGGTGAGCG 61.388 63.158 0.00 0.00 40.38 5.03
1950 1988 1.003718 AGGCCACGTAAAGGTGAGC 60.004 57.895 5.01 6.16 40.38 4.26
1951 1989 0.391263 GGAGGCCACGTAAAGGTGAG 60.391 60.000 5.01 0.00 40.38 3.51
1952 1990 0.834687 AGGAGGCCACGTAAAGGTGA 60.835 55.000 5.01 0.00 40.38 4.02
1953 1991 0.391263 GAGGAGGCCACGTAAAGGTG 60.391 60.000 5.01 0.00 37.66 4.00
1954 1992 1.551019 GGAGGAGGCCACGTAAAGGT 61.551 60.000 5.01 0.00 0.00 3.50
1955 1993 1.221021 GGAGGAGGCCACGTAAAGG 59.779 63.158 5.01 0.00 0.00 3.11
1956 1994 0.175989 GAGGAGGAGGCCACGTAAAG 59.824 60.000 5.01 0.00 0.00 1.85
1957 1995 1.262640 GGAGGAGGAGGCCACGTAAA 61.263 60.000 5.01 0.00 0.00 2.01
1958 1996 1.684734 GGAGGAGGAGGCCACGTAA 60.685 63.158 5.01 0.00 0.00 3.18
1959 1997 2.043248 GGAGGAGGAGGCCACGTA 60.043 66.667 5.01 0.00 0.00 3.57
1973 2011 2.266055 GGAGAGTTGTGGCCGGAG 59.734 66.667 5.05 0.00 0.00 4.63
1974 2012 3.691342 CGGAGAGTTGTGGCCGGA 61.691 66.667 5.05 0.00 40.08 5.14
1976 2014 2.558554 CTACCGGAGAGTTGTGGCCG 62.559 65.000 9.46 0.00 43.20 6.13
1977 2015 1.218316 CTACCGGAGAGTTGTGGCC 59.782 63.158 9.46 0.00 0.00 5.36
1978 2016 1.448013 GCTACCGGAGAGTTGTGGC 60.448 63.158 9.46 0.00 0.00 5.01
1979 2017 0.173708 GAGCTACCGGAGAGTTGTGG 59.826 60.000 9.46 0.00 0.00 4.17
1980 2018 0.179161 CGAGCTACCGGAGAGTTGTG 60.179 60.000 9.46 0.00 0.00 3.33
1981 2019 1.935327 GCGAGCTACCGGAGAGTTGT 61.935 60.000 9.46 0.00 0.00 3.32
1982 2020 1.226717 GCGAGCTACCGGAGAGTTG 60.227 63.158 9.46 0.51 0.00 3.16
1983 2021 1.378778 AGCGAGCTACCGGAGAGTT 60.379 57.895 9.46 2.13 0.00 3.01
1984 2022 2.115911 CAGCGAGCTACCGGAGAGT 61.116 63.158 9.46 0.00 0.00 3.24
1985 2023 2.718731 CAGCGAGCTACCGGAGAG 59.281 66.667 9.46 6.04 0.00 3.20
1986 2024 3.518998 GCAGCGAGCTACCGGAGA 61.519 66.667 9.46 0.00 41.15 3.71
1987 2025 4.577246 GGCAGCGAGCTACCGGAG 62.577 72.222 9.46 1.84 44.79 4.63
1989 2027 4.227134 ATGGCAGCGAGCTACCGG 62.227 66.667 9.55 0.00 44.79 5.28
1990 2028 2.963854 CATGGCAGCGAGCTACCG 60.964 66.667 9.55 0.00 44.79 4.02
1991 2029 2.590007 CCATGGCAGCGAGCTACC 60.590 66.667 7.39 7.39 44.79 3.18
1992 2030 1.884926 GTCCATGGCAGCGAGCTAC 60.885 63.158 6.96 0.00 44.79 3.58
1993 2031 2.501128 GTCCATGGCAGCGAGCTA 59.499 61.111 6.96 0.00 44.79 3.32
1994 2032 4.827087 CGTCCATGGCAGCGAGCT 62.827 66.667 6.96 0.00 44.79 4.09
1995 2033 4.819761 TCGTCCATGGCAGCGAGC 62.820 66.667 17.60 0.00 44.65 5.03
1996 2034 2.584418 CTCGTCCATGGCAGCGAG 60.584 66.667 26.44 26.44 43.42 5.03
1997 2035 4.819761 GCTCGTCCATGGCAGCGA 62.820 66.667 19.42 19.42 0.00 4.93
2016 2054 4.082523 ATGTGGTCACGGCTCGGG 62.083 66.667 0.00 0.00 0.00 5.14
2017 2055 2.509336 GATGTGGTCACGGCTCGG 60.509 66.667 0.00 0.00 0.00 4.63
2018 2056 2.613739 ATCGATGTGGTCACGGCTCG 62.614 60.000 0.00 11.57 34.14 5.03
2019 2057 0.872021 GATCGATGTGGTCACGGCTC 60.872 60.000 0.54 0.00 0.00 4.70
2020 2058 1.141881 GATCGATGTGGTCACGGCT 59.858 57.895 0.54 0.00 0.00 5.52
2021 2059 1.883084 GGATCGATGTGGTCACGGC 60.883 63.158 0.54 0.00 0.00 5.68
2022 2060 1.227263 GGGATCGATGTGGTCACGG 60.227 63.158 0.54 0.00 0.00 4.94
2023 2061 0.104855 ATGGGATCGATGTGGTCACG 59.895 55.000 0.54 0.00 0.00 4.35
2024 2062 1.138859 TCATGGGATCGATGTGGTCAC 59.861 52.381 0.54 0.00 0.00 3.67
2025 2063 1.138859 GTCATGGGATCGATGTGGTCA 59.861 52.381 0.54 0.00 0.00 4.02
2026 2064 1.541233 GGTCATGGGATCGATGTGGTC 60.541 57.143 0.54 0.00 0.00 4.02
2027 2065 0.469917 GGTCATGGGATCGATGTGGT 59.530 55.000 0.54 0.00 0.00 4.16
2028 2066 0.250467 GGGTCATGGGATCGATGTGG 60.250 60.000 0.54 0.00 0.00 4.17
2029 2067 0.250467 GGGGTCATGGGATCGATGTG 60.250 60.000 0.54 0.00 0.00 3.21
2030 2068 1.758440 CGGGGTCATGGGATCGATGT 61.758 60.000 0.54 0.00 0.00 3.06
2031 2069 1.004560 CGGGGTCATGGGATCGATG 60.005 63.158 0.54 0.00 0.00 3.84
2032 2070 2.883828 GCGGGGTCATGGGATCGAT 61.884 63.158 0.00 0.00 0.00 3.59
2033 2071 3.546543 GCGGGGTCATGGGATCGA 61.547 66.667 0.00 0.00 0.00 3.59
2034 2072 4.626081 GGCGGGGTCATGGGATCG 62.626 72.222 0.00 0.00 0.00 3.69
2035 2073 3.171388 AGGCGGGGTCATGGGATC 61.171 66.667 0.00 0.00 0.00 3.36
2036 2074 3.171388 GAGGCGGGGTCATGGGAT 61.171 66.667 0.00 0.00 0.00 3.85
2039 2077 4.181010 CAGGAGGCGGGGTCATGG 62.181 72.222 0.00 0.00 0.00 3.66
2040 2078 3.083349 TCAGGAGGCGGGGTCATG 61.083 66.667 0.00 0.00 0.00 3.07
2041 2079 2.765807 CTCAGGAGGCGGGGTCAT 60.766 66.667 0.00 0.00 0.00 3.06
2050 2088 1.692042 ACCAGATGGGCTCAGGAGG 60.692 63.158 3.48 0.00 42.05 4.30
2051 2089 1.828768 GACCAGATGGGCTCAGGAG 59.171 63.158 3.48 0.00 41.12 3.69
2052 2090 2.060383 CGACCAGATGGGCTCAGGA 61.060 63.158 2.62 0.00 42.58 3.86
2053 2091 2.503061 CGACCAGATGGGCTCAGG 59.497 66.667 2.62 0.00 42.58 3.86
2054 2092 2.202987 GCGACCAGATGGGCTCAG 60.203 66.667 2.62 0.00 42.58 3.35
2055 2093 4.147449 CGCGACCAGATGGGCTCA 62.147 66.667 0.00 0.00 42.58 4.26
2059 2097 4.899239 GAGGCGCGACCAGATGGG 62.899 72.222 9.25 0.00 43.14 4.00
2060 2098 4.899239 GGAGGCGCGACCAGATGG 62.899 72.222 9.25 0.00 43.14 3.51
2061 2099 3.842923 AGGAGGCGCGACCAGATG 61.843 66.667 9.25 0.00 43.14 2.90
2062 2100 3.842923 CAGGAGGCGCGACCAGAT 61.843 66.667 9.25 0.00 43.14 2.90
2064 2102 4.504916 CTCAGGAGGCGCGACCAG 62.505 72.222 9.25 14.02 43.14 4.00
2071 2109 4.869440 CGAGCTGCTCAGGAGGCG 62.869 72.222 27.46 10.12 0.00 5.52
2072 2110 3.429080 CTCGAGCTGCTCAGGAGGC 62.429 68.421 27.46 1.34 0.00 4.70
2073 2111 2.806929 CTCGAGCTGCTCAGGAGG 59.193 66.667 27.46 12.16 0.00 4.30
2074 2112 2.104729 GCTCGAGCTGCTCAGGAG 59.895 66.667 29.88 24.66 38.21 3.69
2075 2113 3.456365 GGCTCGAGCTGCTCAGGA 61.456 66.667 34.46 16.84 41.70 3.86
2076 2114 4.527583 GGGCTCGAGCTGCTCAGG 62.528 72.222 34.46 19.41 41.70 3.86
2077 2115 4.527583 GGGGCTCGAGCTGCTCAG 62.528 72.222 34.46 22.41 41.70 3.35
2079 2117 4.527583 CTGGGGCTCGAGCTGCTC 62.528 72.222 34.46 20.74 41.70 4.26
2098 2136 4.840005 GGAGCCCCTGCGTACAGC 62.840 72.222 0.00 0.00 43.02 4.40
2099 2137 4.162690 GGGAGCCCCTGCGTACAG 62.163 72.222 3.16 0.00 44.33 2.74
2141 2179 0.909133 TGGATAGTGGGCACTGCTCA 60.909 55.000 0.00 0.00 42.52 4.26
2142 2180 0.462759 GTGGATAGTGGGCACTGCTC 60.463 60.000 0.00 0.00 42.52 4.26
2143 2181 1.604378 GTGGATAGTGGGCACTGCT 59.396 57.895 0.00 0.00 42.52 4.24
2144 2182 1.815421 CGTGGATAGTGGGCACTGC 60.815 63.158 0.00 0.00 42.52 4.40
2145 2183 1.815421 GCGTGGATAGTGGGCACTG 60.815 63.158 0.00 0.00 42.52 3.66
2146 2184 2.290287 TGCGTGGATAGTGGGCACT 61.290 57.895 0.00 0.00 45.02 4.40
2147 2185 2.106683 GTGCGTGGATAGTGGGCAC 61.107 63.158 0.00 0.00 45.82 5.01
2148 2186 2.267642 GTGCGTGGATAGTGGGCA 59.732 61.111 0.00 0.00 0.00 5.36
2149 2187 2.890474 CGTGCGTGGATAGTGGGC 60.890 66.667 0.00 0.00 0.00 5.36
2150 2188 2.890474 GCGTGCGTGGATAGTGGG 60.890 66.667 0.00 0.00 0.00 4.61
2151 2189 2.125713 TGCGTGCGTGGATAGTGG 60.126 61.111 0.00 0.00 0.00 4.00
2152 2190 2.788176 CGTGCGTGCGTGGATAGTG 61.788 63.158 0.00 0.00 0.00 2.74
2153 2191 2.506217 CGTGCGTGCGTGGATAGT 60.506 61.111 0.00 0.00 0.00 2.12
2154 2192 3.913573 GCGTGCGTGCGTGGATAG 61.914 66.667 3.11 0.00 0.00 2.08
2155 2193 4.726351 TGCGTGCGTGCGTGGATA 62.726 61.111 3.11 0.00 37.81 2.59
2159 2197 3.697444 TTAGTGCGTGCGTGCGTG 61.697 61.111 3.11 0.00 37.81 5.34
2160 2198 3.698463 GTTAGTGCGTGCGTGCGT 61.698 61.111 3.11 0.00 37.81 5.24
2161 2199 3.403057 AGTTAGTGCGTGCGTGCG 61.403 61.111 0.00 0.00 37.81 5.34
2162 2200 1.626654 ATCAGTTAGTGCGTGCGTGC 61.627 55.000 0.00 0.00 0.00 5.34
2163 2201 0.366871 GATCAGTTAGTGCGTGCGTG 59.633 55.000 0.00 0.00 0.00 5.34
2164 2202 1.071019 CGATCAGTTAGTGCGTGCGT 61.071 55.000 0.00 0.00 0.00 5.24
2165 2203 0.796870 TCGATCAGTTAGTGCGTGCG 60.797 55.000 0.00 0.00 0.00 5.34
2166 2204 0.640768 GTCGATCAGTTAGTGCGTGC 59.359 55.000 0.00 0.00 0.00 5.34
2167 2205 1.135373 AGGTCGATCAGTTAGTGCGTG 60.135 52.381 0.00 0.00 0.00 5.34
2168 2206 1.174783 AGGTCGATCAGTTAGTGCGT 58.825 50.000 0.00 0.00 0.00 5.24
2169 2207 2.855187 GCTAGGTCGATCAGTTAGTGCG 60.855 54.545 0.00 0.00 0.00 5.34
2170 2208 2.099263 TGCTAGGTCGATCAGTTAGTGC 59.901 50.000 0.00 0.00 0.00 4.40
2171 2209 4.294232 CATGCTAGGTCGATCAGTTAGTG 58.706 47.826 0.00 0.00 0.00 2.74
2172 2210 3.243569 GCATGCTAGGTCGATCAGTTAGT 60.244 47.826 11.37 0.00 0.00 2.24
2173 2211 3.243535 TGCATGCTAGGTCGATCAGTTAG 60.244 47.826 20.33 0.00 0.00 2.34
2174 2212 2.693074 TGCATGCTAGGTCGATCAGTTA 59.307 45.455 20.33 0.00 0.00 2.24
2175 2213 1.482182 TGCATGCTAGGTCGATCAGTT 59.518 47.619 20.33 0.00 0.00 3.16
2176 2214 1.114627 TGCATGCTAGGTCGATCAGT 58.885 50.000 20.33 0.00 0.00 3.41
2177 2215 1.068281 AGTGCATGCTAGGTCGATCAG 59.932 52.381 20.33 0.00 0.00 2.90
2178 2216 1.114627 AGTGCATGCTAGGTCGATCA 58.885 50.000 20.33 0.00 0.00 2.92
2179 2217 3.053455 GTTAGTGCATGCTAGGTCGATC 58.947 50.000 20.33 0.00 0.00 3.69
2180 2218 2.224066 GGTTAGTGCATGCTAGGTCGAT 60.224 50.000 20.33 0.00 0.00 3.59
2181 2219 1.136305 GGTTAGTGCATGCTAGGTCGA 59.864 52.381 20.33 0.00 0.00 4.20
2182 2220 1.134818 TGGTTAGTGCATGCTAGGTCG 60.135 52.381 20.33 0.00 0.00 4.79
2183 2221 2.093447 AGTGGTTAGTGCATGCTAGGTC 60.093 50.000 20.33 6.72 0.00 3.85
2184 2222 1.909302 AGTGGTTAGTGCATGCTAGGT 59.091 47.619 20.33 3.09 0.00 3.08
2185 2223 2.698855 AGTGGTTAGTGCATGCTAGG 57.301 50.000 20.33 0.00 0.00 3.02
2186 2224 3.557595 GCTTAGTGGTTAGTGCATGCTAG 59.442 47.826 20.33 0.00 0.00 3.42
2187 2225 3.531538 GCTTAGTGGTTAGTGCATGCTA 58.468 45.455 20.33 0.10 0.00 3.49
2188 2226 2.359900 GCTTAGTGGTTAGTGCATGCT 58.640 47.619 20.33 1.26 0.00 3.79
2189 2227 1.401905 GGCTTAGTGGTTAGTGCATGC 59.598 52.381 11.82 11.82 0.00 4.06
2190 2228 2.420022 GTGGCTTAGTGGTTAGTGCATG 59.580 50.000 0.00 0.00 0.00 4.06
2191 2229 2.039746 TGTGGCTTAGTGGTTAGTGCAT 59.960 45.455 0.00 0.00 0.00 3.96
2192 2230 1.418264 TGTGGCTTAGTGGTTAGTGCA 59.582 47.619 0.00 0.00 0.00 4.57
2193 2231 2.178912 TGTGGCTTAGTGGTTAGTGC 57.821 50.000 0.00 0.00 0.00 4.40
2194 2232 2.420022 GCATGTGGCTTAGTGGTTAGTG 59.580 50.000 0.00 0.00 40.25 2.74
2195 2233 2.039746 TGCATGTGGCTTAGTGGTTAGT 59.960 45.455 0.00 0.00 45.15 2.24
2196 2234 2.420022 GTGCATGTGGCTTAGTGGTTAG 59.580 50.000 0.00 0.00 45.15 2.34
2197 2235 2.432444 GTGCATGTGGCTTAGTGGTTA 58.568 47.619 0.00 0.00 45.15 2.85
2198 2236 1.247567 GTGCATGTGGCTTAGTGGTT 58.752 50.000 0.00 0.00 45.15 3.67
2199 2237 0.955428 CGTGCATGTGGCTTAGTGGT 60.955 55.000 0.00 0.00 45.15 4.16
2200 2238 1.796151 CGTGCATGTGGCTTAGTGG 59.204 57.895 0.00 0.00 45.15 4.00
2201 2239 1.135315 GCGTGCATGTGGCTTAGTG 59.865 57.895 7.93 0.00 45.15 2.74
2202 2240 0.888736 TTGCGTGCATGTGGCTTAGT 60.889 50.000 7.93 0.00 45.15 2.24
2203 2241 0.454957 GTTGCGTGCATGTGGCTTAG 60.455 55.000 7.93 0.00 45.15 2.18
2204 2242 1.578926 GTTGCGTGCATGTGGCTTA 59.421 52.632 7.93 0.00 45.15 3.09
2205 2243 2.336088 GTTGCGTGCATGTGGCTT 59.664 55.556 7.93 0.00 45.15 4.35
2206 2244 4.029186 CGTTGCGTGCATGTGGCT 62.029 61.111 7.93 0.00 45.15 4.75
2219 2257 4.988598 AGTGGAGGTGCGGCGTTG 62.989 66.667 9.37 0.00 0.00 4.10
2220 2258 4.681978 GAGTGGAGGTGCGGCGTT 62.682 66.667 9.37 0.00 0.00 4.84
2222 2260 4.379243 AAGAGTGGAGGTGCGGCG 62.379 66.667 0.51 0.51 0.00 6.46
2223 2261 2.743928 CAAGAGTGGAGGTGCGGC 60.744 66.667 0.00 0.00 0.00 6.53
2224 2262 1.888436 TAGCAAGAGTGGAGGTGCGG 61.888 60.000 0.00 0.00 41.90 5.69
2225 2263 0.459237 CTAGCAAGAGTGGAGGTGCG 60.459 60.000 0.00 0.00 41.90 5.34
2226 2264 0.742635 GCTAGCAAGAGTGGAGGTGC 60.743 60.000 10.63 0.00 37.26 5.01
2227 2265 0.107945 GGCTAGCAAGAGTGGAGGTG 60.108 60.000 18.24 0.00 0.00 4.00
2228 2266 1.268283 GGGCTAGCAAGAGTGGAGGT 61.268 60.000 18.24 0.00 0.00 3.85
2229 2267 1.524482 GGGCTAGCAAGAGTGGAGG 59.476 63.158 18.24 0.00 0.00 4.30
2230 2268 1.142748 CGGGCTAGCAAGAGTGGAG 59.857 63.158 18.24 0.00 0.00 3.86
2231 2269 3.019003 GCGGGCTAGCAAGAGTGGA 62.019 63.158 18.24 0.00 37.05 4.02
2232 2270 2.512515 GCGGGCTAGCAAGAGTGG 60.513 66.667 18.24 0.00 37.05 4.00
2233 2271 2.512515 GGCGGGCTAGCAAGAGTG 60.513 66.667 18.24 0.00 39.27 3.51
2234 2272 3.787001 GGGCGGGCTAGCAAGAGT 61.787 66.667 18.24 0.00 39.27 3.24
2235 2273 2.615227 ATTGGGCGGGCTAGCAAGAG 62.615 60.000 18.24 5.35 39.27 2.85
2236 2274 2.608970 GATTGGGCGGGCTAGCAAGA 62.609 60.000 18.24 0.00 39.27 3.02
2237 2275 2.124151 ATTGGGCGGGCTAGCAAG 60.124 61.111 18.24 10.68 39.27 4.01
2238 2276 2.124320 GATTGGGCGGGCTAGCAA 60.124 61.111 18.24 0.64 39.27 3.91
2239 2277 3.405093 CTGATTGGGCGGGCTAGCA 62.405 63.158 18.24 0.00 39.27 3.49
2240 2278 2.592861 CTGATTGGGCGGGCTAGC 60.593 66.667 6.04 6.04 0.00 3.42
2241 2279 2.592861 GCTGATTGGGCGGGCTAG 60.593 66.667 0.26 0.00 0.00 3.42
2242 2280 3.407083 TGCTGATTGGGCGGGCTA 61.407 61.111 0.26 0.00 0.00 3.93
2248 2286 3.142838 ATGGCGTGCTGATTGGGC 61.143 61.111 0.00 0.00 0.00 5.36
2249 2287 2.777972 CCATGGCGTGCTGATTGGG 61.778 63.158 0.00 0.00 0.00 4.12
2250 2288 2.802792 CCATGGCGTGCTGATTGG 59.197 61.111 0.00 0.00 0.00 3.16
2251 2289 2.103538 GCCATGGCGTGCTGATTG 59.896 61.111 23.48 0.00 0.00 2.67
2252 2290 3.142838 GGCCATGGCGTGCTGATT 61.143 61.111 29.90 0.00 43.06 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.