Multiple sequence alignment - TraesCS2A01G567800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G567800 chr2A 100.000 3824 0 0 3368 7191 766467318 766463495 0.000000e+00 7062.0
1 TraesCS2A01G567800 chr2A 100.000 2859 0 0 1 2859 766470685 766467827 0.000000e+00 5280.0
2 TraesCS2A01G567800 chr2A 90.625 224 9 2 3368 3585 766467222 766467005 3.280000e-73 287.0
3 TraesCS2A01G567800 chr2A 90.625 224 9 2 3464 3681 766467318 766467101 3.280000e-73 287.0
4 TraesCS2A01G567800 chr2A 84.236 203 32 0 2504 2706 766468029 766467827 1.580000e-46 198.0
5 TraesCS2A01G567800 chr2A 84.236 203 32 0 2657 2859 766468182 766467980 1.580000e-46 198.0
6 TraesCS2A01G567800 chr2A 92.188 128 10 0 3368 3495 766467132 766467005 1.590000e-41 182.0
7 TraesCS2A01G567800 chr2A 92.188 128 10 0 3554 3681 766467318 766467191 1.590000e-41 182.0
8 TraesCS2A01G567800 chr2D 92.819 2799 124 17 71 2826 641236807 641234043 0.000000e+00 3984.0
9 TraesCS2A01G567800 chr2D 95.448 1999 65 9 3368 5348 641233588 641231598 0.000000e+00 3164.0
10 TraesCS2A01G567800 chr2D 85.452 1849 114 67 5371 7170 641231537 641229795 0.000000e+00 1781.0
11 TraesCS2A01G567800 chr2D 92.241 232 12 1 3456 3681 641233596 641233365 2.500000e-84 324.0
12 TraesCS2A01G567800 chr2D 91.667 228 12 2 3368 3588 641233492 641233265 7.010000e-80 309.0
13 TraesCS2A01G567800 chr2D 92.481 133 10 0 3549 3681 641233593 641233461 2.650000e-44 191.0
14 TraesCS2A01G567800 chr2D 92.188 128 10 0 3368 3495 641233396 641233269 1.590000e-41 182.0
15 TraesCS2A01G567800 chr2D 81.461 178 33 0 2496 2673 641234220 641234043 5.810000e-31 147.0
16 TraesCS2A01G567800 chr2D 97.674 43 1 0 1 43 641236858 641236816 2.780000e-09 75.0
17 TraesCS2A01G567800 chr2B 92.086 2704 139 24 196 2849 800119092 800121770 0.000000e+00 3738.0
18 TraesCS2A01G567800 chr2B 91.863 1696 74 18 3940 5625 800122635 800124276 0.000000e+00 2309.0
19 TraesCS2A01G567800 chr2B 88.281 896 63 22 5705 6572 800124286 800125167 0.000000e+00 1035.0
20 TraesCS2A01G567800 chr2B 94.757 515 20 2 3381 3888 800122127 800122641 0.000000e+00 795.0
21 TraesCS2A01G567800 chr2B 87.536 345 35 7 1 340 800118291 800118632 6.760000e-105 392.0
22 TraesCS2A01G567800 chr2B 92.105 228 11 2 3368 3588 800122210 800122437 1.510000e-81 315.0
23 TraesCS2A01G567800 chr2B 90.995 211 13 1 3477 3681 800122127 800122337 5.490000e-71 279.0
24 TraesCS2A01G567800 chr2B 93.284 134 9 0 207 340 800118954 800119087 1.580000e-46 198.0
25 TraesCS2A01G567800 chr2B 93.750 128 8 0 3368 3495 800122306 800122433 7.360000e-45 193.0
26 TraesCS2A01G567800 chr2B 91.176 136 11 1 196 331 800118637 800118771 4.430000e-42 183.0
27 TraesCS2A01G567800 chr2B 94.783 115 6 0 3567 3681 800122127 800122241 5.730000e-41 180.0
28 TraesCS2A01G567800 chr2B 83.077 195 33 0 2657 2851 800121428 800121622 2.060000e-40 178.0
29 TraesCS2A01G567800 chr7D 86.973 261 26 5 4956 5215 596062748 596063001 3.280000e-73 287.0
30 TraesCS2A01G567800 chr7D 87.097 124 13 3 5216 5337 596063040 596063162 3.500000e-28 137.0
31 TraesCS2A01G567800 chr3B 100.000 30 0 0 7162 7191 221076617 221076588 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G567800 chr2A 766463495 766470685 7190 True 1709.500000 7062 91.762250 1 7191 8 chr2A.!!$R1 7190
1 TraesCS2A01G567800 chr2D 641229795 641236858 7063 True 1128.555556 3984 91.270111 1 7170 9 chr2D.!!$R1 7169
2 TraesCS2A01G567800 chr2B 800118291 800125167 6876 False 816.250000 3738 91.141083 1 6572 12 chr2B.!!$F1 6571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 1420 0.176680 TCAAATCTCCTCGCTCTGCC 59.823 55.0 0.00 0.0 0.00 4.85 F
778 1421 0.177604 CAAATCTCCTCGCTCTGCCT 59.822 55.0 0.00 0.0 0.00 4.75 F
1725 2393 0.248661 CCATGTCACGCTCCTACTCG 60.249 60.0 0.00 0.0 0.00 4.18 F
2727 3419 0.465097 ATGAAATGGAGGCTCCGCAG 60.465 55.0 27.58 0.0 40.17 5.18 F
4125 4829 0.694771 AGCAGGTGGAGAATGAGCAA 59.305 50.0 0.00 0.0 0.00 3.91 F
5201 5912 0.038744 CCAGCCTGGGTTGTCTCAAT 59.961 55.0 1.63 0.0 32.67 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2613 3305 0.394565 GTTCACTCTGTGGAGCCACT 59.605 55.0 19.47 0.0 46.30 4.00 R
2615 3307 0.764369 AGGTTCACTCTGTGGAGCCA 60.764 55.0 4.76 0.0 40.07 4.75 R
2751 3443 0.890683 CCTCCATTTCACCTGCAACC 59.109 55.0 0.00 0.0 0.00 3.77 R
4128 4832 0.529337 CTGCAGCACGATCAGGTAGG 60.529 60.0 0.00 0.0 0.00 3.18 R
5718 6476 0.037605 CACGTACAGGAACCCAGGAC 60.038 60.0 0.00 0.0 0.00 3.85 R
6542 7380 0.094730 GAGCGCAACACGGAACATAC 59.905 55.0 11.47 0.0 43.93 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.040947 TGCCAACATGATCAACACCCTA 59.959 45.455 0.00 0.00 0.00 3.53
87 88 1.071699 AGTACCAACACAGTTCCGCAT 59.928 47.619 0.00 0.00 0.00 4.73
104 105 0.179100 CATCACGACGAGGATGCCTT 60.179 55.000 16.81 0.00 35.03 4.35
150 151 3.317993 GGCGTTACCCAAGCATTTATCAT 59.682 43.478 0.00 0.00 0.00 2.45
151 152 4.290155 GCGTTACCCAAGCATTTATCATG 58.710 43.478 0.00 0.00 0.00 3.07
178 179 0.981183 ATTCCTACCGGCAACAGTCA 59.019 50.000 0.00 0.00 0.00 3.41
191 192 2.872245 CAACAGTCACGTCAAGACCAAT 59.128 45.455 1.21 0.00 36.68 3.16
194 195 4.699637 ACAGTCACGTCAAGACCAATTTA 58.300 39.130 1.21 0.00 36.68 1.40
198 200 7.442969 ACAGTCACGTCAAGACCAATTTATAAA 59.557 33.333 0.00 0.00 36.68 1.40
261 415 7.223971 CGAAATATTTGGATGGACGAACTAGAA 59.776 37.037 5.17 0.00 0.00 2.10
272 881 2.094675 CGAACTAGAACCCTAACCGGA 58.905 52.381 9.46 0.00 33.16 5.14
321 930 3.801997 CAGGGGCGCTGGATCCTT 61.802 66.667 22.71 0.00 0.00 3.36
349 958 5.600696 CCAAAGTTAGGCAGTTGAAAATGT 58.399 37.500 0.00 0.00 0.00 2.71
427 1036 8.842358 ATGTTTCTTATCGGTTTTCAAGTAGA 57.158 30.769 0.00 0.00 0.00 2.59
469 1080 5.224135 TGATATCGAAAATATTCCGCGACA 58.776 37.500 8.23 0.00 33.52 4.35
470 1081 5.692654 TGATATCGAAAATATTCCGCGACAA 59.307 36.000 8.23 0.00 33.52 3.18
490 1102 6.813649 CGACAACAAATATCCGGATCTATGAT 59.186 38.462 23.08 10.01 0.00 2.45
491 1103 7.331934 CGACAACAAATATCCGGATCTATGATT 59.668 37.037 23.08 12.00 0.00 2.57
525 1137 2.037902 TCAAACCTAACACGAGGCATCA 59.962 45.455 0.00 0.00 40.65 3.07
526 1138 2.094762 AACCTAACACGAGGCATCAC 57.905 50.000 0.00 0.00 40.65 3.06
551 1166 4.271049 CCTCACATCGCCATTGTTAACTAG 59.729 45.833 7.22 0.00 0.00 2.57
558 1173 5.057819 TCGCCATTGTTAACTAGAAACACA 58.942 37.500 7.22 7.19 36.61 3.72
637 1257 6.982141 TCTATTATTACCAGTTTACCACGCAG 59.018 38.462 0.00 0.00 0.00 5.18
774 1417 1.408702 GCTCTCAAATCTCCTCGCTCT 59.591 52.381 0.00 0.00 0.00 4.09
775 1418 2.799207 GCTCTCAAATCTCCTCGCTCTG 60.799 54.545 0.00 0.00 0.00 3.35
776 1419 1.135915 TCTCAAATCTCCTCGCTCTGC 59.864 52.381 0.00 0.00 0.00 4.26
777 1420 0.176680 TCAAATCTCCTCGCTCTGCC 59.823 55.000 0.00 0.00 0.00 4.85
778 1421 0.177604 CAAATCTCCTCGCTCTGCCT 59.822 55.000 0.00 0.00 0.00 4.75
779 1422 0.463620 AAATCTCCTCGCTCTGCCTC 59.536 55.000 0.00 0.00 0.00 4.70
1385 2038 4.671590 TCTCCACGCCAGGGACGA 62.672 66.667 8.69 0.00 0.00 4.20
1386 2039 4.436998 CTCCACGCCAGGGACGAC 62.437 72.222 8.69 0.00 0.00 4.34
1500 2168 2.044252 CGGAGGAACGGAGGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
1725 2393 0.248661 CCATGTCACGCTCCTACTCG 60.249 60.000 0.00 0.00 0.00 4.18
2042 2728 5.679734 GATGATGTCGATAAACTGCCAAT 57.320 39.130 0.00 0.00 0.00 3.16
2087 2773 2.125106 GGTGATGGTGGAGGCGAC 60.125 66.667 0.00 0.00 0.00 5.19
2184 2870 4.586841 GCAGAGTATGAGTATGAGGAGGTT 59.413 45.833 0.00 0.00 0.00 3.50
2304 2996 1.203994 GTTGCTGGCTTGAATGATGCT 59.796 47.619 0.00 0.00 0.00 3.79
2305 2997 0.815095 TGCTGGCTTGAATGATGCTG 59.185 50.000 0.00 0.00 0.00 4.41
2306 2998 1.100510 GCTGGCTTGAATGATGCTGA 58.899 50.000 0.00 0.00 0.00 4.26
2307 2999 1.681793 GCTGGCTTGAATGATGCTGAT 59.318 47.619 0.00 0.00 0.00 2.90
2308 3000 2.543861 GCTGGCTTGAATGATGCTGATG 60.544 50.000 0.00 0.00 0.00 3.07
2309 3001 1.407618 TGGCTTGAATGATGCTGATGC 59.592 47.619 0.00 0.00 40.20 3.91
2375 3067 1.629861 TGTTCATCCATCACAGCCTGA 59.370 47.619 0.00 0.00 0.00 3.86
2387 3079 2.190578 GCCTGATGAGGAACCGGG 59.809 66.667 6.32 0.00 42.93 5.73
2423 3115 3.125573 CAGCGACGTCGAGGAGGA 61.126 66.667 39.74 0.00 43.02 3.71
2543 3235 4.672409 CAAAGTCAACCTGAAACTGAACC 58.328 43.478 0.00 0.00 0.00 3.62
2567 3259 4.597507 TCAAGTTAGAGGTGAAATGGAGGT 59.402 41.667 0.00 0.00 0.00 3.85
2572 3264 2.307098 AGAGGTGAAATGGAGGTTCTGG 59.693 50.000 0.00 0.00 0.00 3.86
2588 3280 4.451900 GTTCTGGAGAGTGAACTTGGAAA 58.548 43.478 0.00 0.00 39.36 3.13
2602 3294 7.009540 GTGAACTTGGAAATGAACTTCAAGTTG 59.990 37.037 19.87 0.00 38.80 3.16
2603 3295 5.351458 ACTTGGAAATGAACTTCAAGTTGC 58.649 37.500 7.75 0.22 38.80 4.17
2606 3298 3.737774 GGAAATGAACTTCAAGTTGCAGC 59.262 43.478 7.75 0.00 38.80 5.25
2613 3305 5.299028 TGAACTTCAAGTTGCAGCTGAAATA 59.701 36.000 20.43 0.00 38.80 1.40
2615 3307 4.823989 ACTTCAAGTTGCAGCTGAAATAGT 59.176 37.500 20.43 10.14 0.00 2.12
2621 3313 1.020437 GCAGCTGAAATAGTGGCTCC 58.980 55.000 20.43 0.00 32.30 4.70
2622 3314 1.679944 GCAGCTGAAATAGTGGCTCCA 60.680 52.381 20.43 0.00 32.30 3.86
2654 3346 5.010282 ACCTGAAACTGAACTTCAAGTTGT 58.990 37.500 7.75 0.00 38.80 3.32
2727 3419 0.465097 ATGAAATGGAGGCTCCGCAG 60.465 55.000 27.58 0.00 40.17 5.18
2745 3437 2.219674 GCAGAGTGAACGTGAAACTGAG 59.780 50.000 11.99 3.24 31.75 3.35
2826 3518 1.288439 CGATGAGATGGAGGCTCCG 59.712 63.158 27.58 9.92 40.17 4.63
2835 3527 1.302511 GGAGGCTCCGCAAAGTGAA 60.303 57.895 19.53 0.00 0.00 3.18
2840 3532 0.944386 GCTCCGCAAAGTGAACTTGA 59.056 50.000 0.00 0.00 36.12 3.02
2844 3536 2.750166 TCCGCAAAGTGAACTTGAAACA 59.250 40.909 0.00 0.00 36.12 2.83
2849 3541 5.402398 GCAAAGTGAACTTGAAACAGAACT 58.598 37.500 0.00 0.00 36.12 3.01
2850 3542 5.863935 GCAAAGTGAACTTGAAACAGAACTT 59.136 36.000 0.00 0.00 36.12 2.66
2851 3543 6.033937 GCAAAGTGAACTTGAAACAGAACTTC 59.966 38.462 0.00 0.00 36.12 3.01
2852 3544 6.817765 AAGTGAACTTGAAACAGAACTTCA 57.182 33.333 0.00 0.00 34.38 3.02
2853 3545 6.817765 AGTGAACTTGAAACAGAACTTCAA 57.182 33.333 0.00 0.00 39.79 2.69
3401 4093 5.551760 ACTCCACAAATAGAAATTGAGCG 57.448 39.130 0.00 0.00 0.00 5.03
3460 4152 4.776349 TCTGCAAAGTGAACCTGAAACTA 58.224 39.130 0.00 0.00 0.00 2.24
3558 4262 3.509575 TGCAAAGTGAACCTGAACTTGTT 59.490 39.130 0.00 0.00 36.75 2.83
3618 4322 2.887152 ACTTCAAGTGGCAGGTGAAATC 59.113 45.455 12.39 0.00 31.21 2.17
3683 4387 7.495606 GGAAACTCCACAAATTGAAATTGAAGT 59.504 33.333 0.00 0.00 36.28 3.01
3817 4521 4.033009 TGATCCTCCTGAAGAACATGCTA 58.967 43.478 0.00 0.00 0.00 3.49
3866 4570 1.872313 GATGAGCCAGCAAGCATACTC 59.128 52.381 0.55 0.00 34.23 2.59
3875 4579 3.069872 CAGCAAGCATACTCTGATCCTCT 59.930 47.826 0.00 0.00 0.00 3.69
3886 4590 9.513906 CATACTCTGATCCTCTAGATACTCAAA 57.486 37.037 0.00 0.00 34.42 2.69
4062 4766 2.768492 GCTGGAGGGCGAGCAAATG 61.768 63.158 0.00 0.00 44.27 2.32
4063 4767 2.751436 TGGAGGGCGAGCAAATGC 60.751 61.111 0.00 0.00 42.49 3.56
4125 4829 0.694771 AGCAGGTGGAGAATGAGCAA 59.305 50.000 0.00 0.00 0.00 3.91
4128 4832 2.098770 GCAGGTGGAGAATGAGCAATTC 59.901 50.000 4.42 4.42 44.44 2.17
4466 5170 4.455877 ACCCAAGTAAGCTTTCTTTCATCG 59.544 41.667 14.94 4.70 33.85 3.84
4511 5216 2.024369 GGGGGAGAGGGCAATCTTTTAA 60.024 50.000 0.00 0.00 0.00 1.52
4600 5305 2.048222 TCAAGACGAGCAAGCCGG 60.048 61.111 0.00 0.00 0.00 6.13
4729 5434 9.890352 GAGATGGCTGTTTTGAAAGAATATATC 57.110 33.333 0.00 0.00 0.00 1.63
4744 5449 7.992754 AGAATATATCTGTGCCCTCATTTTC 57.007 36.000 0.00 0.00 36.88 2.29
4766 5471 3.685058 GTTCATTATTCTTCGTGCAGCC 58.315 45.455 0.00 0.00 0.00 4.85
4782 5491 3.131223 TGCAGCCAGTAAACTAGCTAGAG 59.869 47.826 27.45 4.64 38.86 2.43
4787 5496 4.538738 CCAGTAAACTAGCTAGAGAGGGT 58.461 47.826 27.45 1.08 0.00 4.34
4807 5516 6.892485 AGGGTAACTGTTACTGTACAACTTT 58.108 36.000 25.04 3.01 36.39 2.66
4822 5531 9.379791 CTGTACAACTTTCTTTAATACTAGGGG 57.620 37.037 0.00 0.00 0.00 4.79
4911 5620 5.653507 TGTTCATGCTCTTATTGGCATTTC 58.346 37.500 0.00 0.00 45.41 2.17
4920 5629 5.116180 TCTTATTGGCATTTCTCAGTACCG 58.884 41.667 0.00 0.00 0.00 4.02
4924 5633 1.676014 GGCATTTCTCAGTACCGCACT 60.676 52.381 0.00 0.00 38.32 4.40
4954 5664 5.407407 TGTTCTTCTCTAACTGTGATCCC 57.593 43.478 0.00 0.00 0.00 3.85
5201 5912 0.038744 CCAGCCTGGGTTGTCTCAAT 59.961 55.000 1.63 0.00 32.67 2.57
5252 5969 7.365840 AGCTTGTGTAGATTAGTTAACTTGC 57.634 36.000 14.49 3.81 0.00 4.01
5270 5987 2.283101 GGGTGCACATTCCTGGCA 60.283 61.111 20.43 0.00 34.70 4.92
5343 6060 0.107268 ACGCATGATAGCTGGCATGA 59.893 50.000 25.66 0.00 43.43 3.07
5361 6116 4.093850 GCATGAATGGAGGCATTTGTTTTC 59.906 41.667 0.00 0.00 0.00 2.29
5363 6118 5.138125 TGAATGGAGGCATTTGTTTTCTC 57.862 39.130 0.00 0.00 0.00 2.87
5367 6122 3.634448 TGGAGGCATTTGTTTTCTCGAAA 59.366 39.130 0.00 0.00 0.00 3.46
5368 6123 3.981416 GGAGGCATTTGTTTTCTCGAAAC 59.019 43.478 0.00 0.00 46.28 2.78
5422 6177 2.034124 GCCCACATGGATTACAGCAAT 58.966 47.619 0.00 0.00 37.39 3.56
5465 6220 5.611374 ACATTTAGTGATATAAGCGCAGGT 58.389 37.500 11.47 0.00 44.60 4.00
5486 6241 4.514401 GTCATTTCTTTAGGTGGACCGAT 58.486 43.478 0.00 0.00 42.08 4.18
5585 6341 1.070577 CAGAGCACGTTTTCAGTTCCG 60.071 52.381 0.00 0.00 0.00 4.30
5590 6346 2.030701 GCACGTTTTCAGTTCCGTACAA 59.969 45.455 0.00 0.00 31.42 2.41
5594 6350 4.812626 ACGTTTTCAGTTCCGTACAAAGAT 59.187 37.500 0.00 0.00 0.00 2.40
5596 6352 6.647895 ACGTTTTCAGTTCCGTACAAAGATAT 59.352 34.615 0.00 0.00 0.00 1.63
5625 6381 7.623089 GCTCTTTTTCTGCTTAGTCTGTATGTG 60.623 40.741 0.00 0.00 0.00 3.21
5641 6397 4.682401 TGTATGTGTTATAATACGGCTGCG 59.318 41.667 7.72 0.00 32.90 5.18
5669 6425 9.259832 CATATCCCCCATTCGATGATCTATATA 57.740 37.037 0.00 0.00 0.00 0.86
5698 6456 1.136828 ACCTGGTGACTAGTTTGCCA 58.863 50.000 0.00 5.39 0.00 4.92
5718 6476 1.714794 ATCGTCAGTCTTGGCTTTCG 58.285 50.000 0.00 0.00 0.00 3.46
5739 6497 0.320421 CCTGGGTTCCTGTACGTGTG 60.320 60.000 0.00 0.00 0.00 3.82
5748 6506 3.047877 GTACGTGTGCCTGTGCCC 61.048 66.667 0.00 0.00 36.33 5.36
5877 6635 0.806868 CAGGGTGCTGCAACTATGTG 59.193 55.000 18.32 6.57 0.00 3.21
5904 6662 4.007659 CCTATTTTCAGGCCGTGTTTACT 58.992 43.478 0.00 0.00 0.00 2.24
5924 6682 8.795341 GTTTACTGCTTACTGAAACAACTTTTC 58.205 33.333 0.00 0.00 31.73 2.29
5927 6685 7.029563 ACTGCTTACTGAAACAACTTTTCTTG 58.970 34.615 0.00 0.00 0.00 3.02
6015 6786 6.956299 AACATATGCTTGTTCATTTCTTGC 57.044 33.333 1.58 0.00 34.83 4.01
6037 6810 5.163764 TGCCTATGCTTTATTCAACTGAACG 60.164 40.000 0.00 0.00 36.12 3.95
6039 6812 4.701956 ATGCTTTATTCAACTGAACGGG 57.298 40.909 0.00 0.00 36.80 5.28
6040 6813 2.227865 TGCTTTATTCAACTGAACGGGC 59.772 45.455 0.00 0.00 36.80 6.13
6041 6814 2.488153 GCTTTATTCAACTGAACGGGCT 59.512 45.455 0.00 0.00 36.80 5.19
6042 6815 3.670627 GCTTTATTCAACTGAACGGGCTG 60.671 47.826 0.00 0.00 36.80 4.85
6043 6816 1.448985 TATTCAACTGAACGGGCTGC 58.551 50.000 0.00 0.00 36.80 5.25
6044 6817 1.577328 ATTCAACTGAACGGGCTGCG 61.577 55.000 0.00 0.00 36.80 5.18
6045 6818 3.726517 CAACTGAACGGGCTGCGG 61.727 66.667 0.00 0.00 0.00 5.69
6054 6827 4.115199 GGGCTGCGGGGAGTGAAT 62.115 66.667 0.00 0.00 0.00 2.57
6055 6828 2.044946 GGCTGCGGGGAGTGAATT 60.045 61.111 0.00 0.00 0.00 2.17
6064 6837 3.800604 GCGGGGAGTGAATTCTACAGATC 60.801 52.174 7.05 0.00 0.00 2.75
6070 6871 5.752955 GGAGTGAATTCTACAGATCTGCTTC 59.247 44.000 22.83 16.22 0.00 3.86
6103 6904 0.038166 TTCAGGCCATGTCTTCCACC 59.962 55.000 5.01 0.00 0.00 4.61
6105 6906 0.038744 CAGGCCATGTCTTCCACCTT 59.961 55.000 5.01 0.00 0.00 3.50
6111 6912 5.103515 AGGCCATGTCTTCCACCTTAATAAT 60.104 40.000 5.01 0.00 0.00 1.28
6112 6913 5.010012 GGCCATGTCTTCCACCTTAATAATG 59.990 44.000 0.00 0.00 0.00 1.90
6118 6919 8.934023 TGTCTTCCACCTTAATAATGTTTTCT 57.066 30.769 0.00 0.00 0.00 2.52
6151 6952 4.320608 TTTTTGGCCAGAAGTGATCAAC 57.679 40.909 5.11 0.00 0.00 3.18
6170 6971 2.927856 TGTGGGACCTGCCGTCAT 60.928 61.111 3.70 0.00 43.95 3.06
6172 6973 3.399181 TGGGACCTGCCGTCATCC 61.399 66.667 3.70 0.00 43.95 3.51
6184 6985 1.144936 GTCATCCGAGCTGGGGAAG 59.855 63.158 15.52 7.09 37.07 3.46
6223 7024 2.360801 GCCATGGTGTGTTGTAACTTGT 59.639 45.455 14.67 0.00 0.00 3.16
6235 7057 3.399330 TGTAACTTGTGCTCCAGCTTAC 58.601 45.455 0.00 1.09 42.66 2.34
6236 7058 2.938956 AACTTGTGCTCCAGCTTACT 57.061 45.000 0.00 0.00 42.66 2.24
6237 7059 2.175878 ACTTGTGCTCCAGCTTACTG 57.824 50.000 0.00 0.00 44.05 2.74
6238 7060 1.417890 ACTTGTGCTCCAGCTTACTGT 59.582 47.619 0.00 0.00 42.81 3.55
6263 7085 5.790593 TGTCTGTCTGTTGTTAGTTATCCC 58.209 41.667 0.00 0.00 0.00 3.85
6342 7169 5.775701 ACTATGTGGTCTTATGCTAGGTAGG 59.224 44.000 0.00 0.00 0.00 3.18
6343 7170 2.698797 TGTGGTCTTATGCTAGGTAGGC 59.301 50.000 0.00 0.00 0.00 3.93
6345 7172 4.150359 GTGGTCTTATGCTAGGTAGGCTA 58.850 47.826 0.00 0.00 0.00 3.93
6350 7182 5.182380 GTCTTATGCTAGGTAGGCTAGTCTG 59.818 48.000 7.24 0.00 0.00 3.51
6361 7193 5.221283 GGTAGGCTAGTCTGGTTGTTAGATC 60.221 48.000 7.24 0.00 0.00 2.75
6362 7194 3.707102 AGGCTAGTCTGGTTGTTAGATCC 59.293 47.826 0.00 0.00 0.00 3.36
6363 7195 3.181464 GGCTAGTCTGGTTGTTAGATCCC 60.181 52.174 0.00 0.00 0.00 3.85
6364 7196 3.707102 GCTAGTCTGGTTGTTAGATCCCT 59.293 47.826 0.00 0.00 0.00 4.20
6365 7197 4.894114 GCTAGTCTGGTTGTTAGATCCCTA 59.106 45.833 0.00 0.00 0.00 3.53
6366 7198 5.010213 GCTAGTCTGGTTGTTAGATCCCTAG 59.990 48.000 0.00 0.00 0.00 3.02
6367 7199 4.949121 AGTCTGGTTGTTAGATCCCTAGT 58.051 43.478 0.00 0.00 0.00 2.57
6368 7200 5.342866 AGTCTGGTTGTTAGATCCCTAGTT 58.657 41.667 0.00 0.00 0.00 2.24
6400 7235 2.949447 AGTCACATTTCCTTGCTGGTT 58.051 42.857 0.00 0.00 37.07 3.67
6401 7236 2.624838 AGTCACATTTCCTTGCTGGTTG 59.375 45.455 0.00 0.00 37.07 3.77
6413 7248 1.202806 TGCTGGTTGAGGAAGAAGTGG 60.203 52.381 0.00 0.00 0.00 4.00
6558 7396 1.418367 CGGTATGTTCCGTGTTGCG 59.582 57.895 0.00 0.00 44.77 4.85
6579 7417 0.250234 TCCTCCTGATTCACCTTGCG 59.750 55.000 0.00 0.00 0.00 4.85
6586 7424 0.169009 GATTCACCTTGCGAAGTGCC 59.831 55.000 0.00 0.00 45.60 5.01
6651 7489 1.941975 ACAGTTTTGGCTGCAAAATGC 59.058 42.857 2.51 0.16 45.29 3.56
6662 7500 2.358939 GCAAAATGCAGGGAGTCTTG 57.641 50.000 0.00 0.00 44.26 3.02
6663 7501 1.067354 GCAAAATGCAGGGAGTCTTGG 60.067 52.381 0.00 0.00 44.26 3.61
6664 7502 2.242043 CAAAATGCAGGGAGTCTTGGT 58.758 47.619 0.00 0.00 0.00 3.67
6666 7504 2.206576 AATGCAGGGAGTCTTGGTTC 57.793 50.000 0.00 0.00 0.00 3.62
6667 7505 1.067295 ATGCAGGGAGTCTTGGTTCA 58.933 50.000 0.00 0.00 0.00 3.18
6668 7506 1.067295 TGCAGGGAGTCTTGGTTCAT 58.933 50.000 0.00 0.00 0.00 2.57
6669 7507 1.003580 TGCAGGGAGTCTTGGTTCATC 59.996 52.381 0.00 0.00 0.00 2.92
6670 7508 1.280421 GCAGGGAGTCTTGGTTCATCT 59.720 52.381 0.00 0.00 0.00 2.90
6671 7509 2.501723 GCAGGGAGTCTTGGTTCATCTA 59.498 50.000 0.00 0.00 0.00 1.98
6673 7511 4.508662 CAGGGAGTCTTGGTTCATCTAAC 58.491 47.826 0.00 0.00 37.36 2.34
6700 7538 1.211457 GATCCTCCTGATGCACCTTGT 59.789 52.381 0.00 0.00 32.41 3.16
6704 7542 2.507484 CTCCTGATGCACCTTGTGAAA 58.493 47.619 0.00 0.00 35.23 2.69
6705 7543 2.486982 CTCCTGATGCACCTTGTGAAAG 59.513 50.000 0.00 0.00 35.23 2.62
6706 7544 2.106338 TCCTGATGCACCTTGTGAAAGA 59.894 45.455 0.00 0.00 35.23 2.52
6707 7545 2.886523 CCTGATGCACCTTGTGAAAGAA 59.113 45.455 0.00 0.00 35.23 2.52
6715 7553 2.985406 CTTGTGAAAGAAGGCTCTGC 57.015 50.000 0.00 0.00 32.80 4.26
6716 7554 2.224606 CTTGTGAAAGAAGGCTCTGCA 58.775 47.619 0.00 0.00 32.80 4.41
6717 7555 2.346766 TGTGAAAGAAGGCTCTGCAA 57.653 45.000 0.00 0.00 30.03 4.08
6718 7556 2.653726 TGTGAAAGAAGGCTCTGCAAA 58.346 42.857 0.00 0.00 30.03 3.68
6719 7557 3.225104 TGTGAAAGAAGGCTCTGCAAAT 58.775 40.909 0.00 0.00 30.03 2.32
6720 7558 4.397420 TGTGAAAGAAGGCTCTGCAAATA 58.603 39.130 0.00 0.00 30.03 1.40
6721 7559 4.456911 TGTGAAAGAAGGCTCTGCAAATAG 59.543 41.667 0.00 0.00 30.03 1.73
6722 7560 4.012374 TGAAAGAAGGCTCTGCAAATAGG 58.988 43.478 0.00 0.00 30.03 2.57
6723 7561 2.725221 AGAAGGCTCTGCAAATAGGG 57.275 50.000 0.00 0.00 0.00 3.53
6724 7562 1.028130 GAAGGCTCTGCAAATAGGGC 58.972 55.000 0.00 0.00 43.56 5.19
6726 7564 4.664062 GCTCTGCAAATAGGGCCA 57.336 55.556 6.18 0.00 38.25 5.36
6727 7565 3.122369 GCTCTGCAAATAGGGCCAT 57.878 52.632 6.18 0.00 38.25 4.40
6728 7566 0.957362 GCTCTGCAAATAGGGCCATC 59.043 55.000 6.18 0.00 38.25 3.51
6729 7567 1.478288 GCTCTGCAAATAGGGCCATCT 60.478 52.381 6.18 0.00 38.25 2.90
6767 7605 1.065564 GCTCCTCCTGATTCAGCTTGT 60.066 52.381 8.23 0.00 0.00 3.16
6768 7606 2.630158 CTCCTCCTGATTCAGCTTGTG 58.370 52.381 8.23 0.00 0.00 3.33
6780 7618 2.159254 TCAGCTTGTGAAGTGCCAAAAC 60.159 45.455 0.00 0.00 29.64 2.43
6860 7698 3.897239 TGGCCAAACAGAAGAGAAGAAA 58.103 40.909 0.61 0.00 0.00 2.52
6861 7699 4.473444 TGGCCAAACAGAAGAGAAGAAAT 58.527 39.130 0.61 0.00 0.00 2.17
6866 7707 5.278660 CCAAACAGAAGAGAAGAAATGTGGG 60.279 44.000 0.00 0.00 0.00 4.61
6876 7717 6.950041 AGAGAAGAAATGTGGGAATGAATGAA 59.050 34.615 0.00 0.00 0.00 2.57
6877 7718 7.618512 AGAGAAGAAATGTGGGAATGAATGAAT 59.381 33.333 0.00 0.00 0.00 2.57
6878 7719 7.553334 AGAAGAAATGTGGGAATGAATGAATG 58.447 34.615 0.00 0.00 0.00 2.67
6879 7720 7.398047 AGAAGAAATGTGGGAATGAATGAATGA 59.602 33.333 0.00 0.00 0.00 2.57
6880 7721 7.484993 AGAAATGTGGGAATGAATGAATGAA 57.515 32.000 0.00 0.00 0.00 2.57
6881 7722 8.086143 AGAAATGTGGGAATGAATGAATGAAT 57.914 30.769 0.00 0.00 0.00 2.57
6893 7734 7.797038 TGAATGAATGAATATGAGTGAGTGG 57.203 36.000 0.00 0.00 0.00 4.00
6901 7742 7.864108 TGAATATGAGTGAGTGGTAATTTGG 57.136 36.000 0.00 0.00 0.00 3.28
6932 7773 1.160137 CAGCACCAGCCTAACAAGAC 58.840 55.000 0.00 0.00 43.56 3.01
6952 7793 3.453424 ACAACATTTGTCGGGCTTTTTC 58.547 40.909 0.00 0.00 40.56 2.29
6954 7795 2.316108 ACATTTGTCGGGCTTTTTCCT 58.684 42.857 0.00 0.00 0.00 3.36
6956 7797 2.880963 TTTGTCGGGCTTTTTCCTTG 57.119 45.000 0.00 0.00 0.00 3.61
6957 7798 0.387565 TTGTCGGGCTTTTTCCTTGC 59.612 50.000 0.00 0.00 0.00 4.01
6958 7799 0.467290 TGTCGGGCTTTTTCCTTGCT 60.467 50.000 0.00 0.00 0.00 3.91
6960 7801 0.673437 TCGGGCTTTTTCCTTGCTTG 59.327 50.000 0.00 0.00 0.00 4.01
6961 7802 0.319813 CGGGCTTTTTCCTTGCTTGG 60.320 55.000 0.00 0.00 0.00 3.61
6962 7803 0.758734 GGGCTTTTTCCTTGCTTGGT 59.241 50.000 0.00 0.00 0.00 3.67
6963 7804 1.541015 GGGCTTTTTCCTTGCTTGGTG 60.541 52.381 0.00 0.00 0.00 4.17
6987 7828 2.026822 TCCCTGATTTGAGAGGAACAGC 60.027 50.000 0.00 0.00 0.00 4.40
7010 7851 4.609995 GCTGCTGCAATGCCATTT 57.390 50.000 11.11 0.00 39.41 2.32
7087 7931 2.832129 CAGGGTAAGAAGGTCTGCTGTA 59.168 50.000 0.00 0.00 0.00 2.74
7088 7932 3.452627 CAGGGTAAGAAGGTCTGCTGTAT 59.547 47.826 0.00 0.00 0.00 2.29
7089 7933 3.452627 AGGGTAAGAAGGTCTGCTGTATG 59.547 47.826 0.00 0.00 0.00 2.39
7090 7934 3.197983 GGGTAAGAAGGTCTGCTGTATGT 59.802 47.826 0.00 0.00 0.00 2.29
7091 7935 4.404715 GGGTAAGAAGGTCTGCTGTATGTA 59.595 45.833 0.00 0.00 0.00 2.29
7092 7936 5.070580 GGGTAAGAAGGTCTGCTGTATGTAT 59.929 44.000 0.00 0.00 0.00 2.29
7093 7937 6.267014 GGGTAAGAAGGTCTGCTGTATGTATA 59.733 42.308 0.00 0.00 0.00 1.47
7094 7938 7.371936 GGTAAGAAGGTCTGCTGTATGTATAG 58.628 42.308 0.00 0.00 0.00 1.31
7110 7954 9.590828 TGTATGTATAGGTATAGCAACCAACTA 57.409 33.333 4.48 0.00 42.40 2.24
7113 7957 8.543293 TGTATAGGTATAGCAACCAACTAACT 57.457 34.615 4.48 0.00 42.40 2.24
7114 7958 9.645128 TGTATAGGTATAGCAACCAACTAACTA 57.355 33.333 4.48 0.00 42.40 2.24
7115 7959 9.905171 GTATAGGTATAGCAACCAACTAACTAC 57.095 37.037 4.48 0.00 42.40 2.73
7163 8007 5.931724 GGACCAAAACCAAACCAAATCATAG 59.068 40.000 0.00 0.00 0.00 2.23
7164 8008 6.463755 GGACCAAAACCAAACCAAATCATAGT 60.464 38.462 0.00 0.00 0.00 2.12
7165 8009 6.521162 ACCAAAACCAAACCAAATCATAGTC 58.479 36.000 0.00 0.00 0.00 2.59
7166 8010 5.931724 CCAAAACCAAACCAAATCATAGTCC 59.068 40.000 0.00 0.00 0.00 3.85
7167 8011 6.239572 CCAAAACCAAACCAAATCATAGTCCT 60.240 38.462 0.00 0.00 0.00 3.85
7168 8012 6.994421 AAACCAAACCAAATCATAGTCCTT 57.006 33.333 0.00 0.00 0.00 3.36
7169 8013 6.590234 AACCAAACCAAATCATAGTCCTTC 57.410 37.500 0.00 0.00 0.00 3.46
7170 8014 5.016831 ACCAAACCAAATCATAGTCCTTCC 58.983 41.667 0.00 0.00 0.00 3.46
7171 8015 4.096382 CCAAACCAAATCATAGTCCTTCCG 59.904 45.833 0.00 0.00 0.00 4.30
7172 8016 4.569719 AACCAAATCATAGTCCTTCCGT 57.430 40.909 0.00 0.00 0.00 4.69
7173 8017 4.569719 ACCAAATCATAGTCCTTCCGTT 57.430 40.909 0.00 0.00 0.00 4.44
7174 8018 4.514401 ACCAAATCATAGTCCTTCCGTTC 58.486 43.478 0.00 0.00 0.00 3.95
7175 8019 3.877508 CCAAATCATAGTCCTTCCGTTCC 59.122 47.826 0.00 0.00 0.00 3.62
7176 8020 3.454371 AATCATAGTCCTTCCGTTCCG 57.546 47.619 0.00 0.00 0.00 4.30
7177 8021 2.133281 TCATAGTCCTTCCGTTCCGA 57.867 50.000 0.00 0.00 0.00 4.55
7178 8022 2.449464 TCATAGTCCTTCCGTTCCGAA 58.551 47.619 0.00 0.00 0.00 4.30
7179 8023 3.028850 TCATAGTCCTTCCGTTCCGAAT 58.971 45.455 0.00 0.00 0.00 3.34
7180 8024 3.449737 TCATAGTCCTTCCGTTCCGAATT 59.550 43.478 0.00 0.00 0.00 2.17
7181 8025 4.646040 TCATAGTCCTTCCGTTCCGAATTA 59.354 41.667 0.00 0.00 0.00 1.40
7182 8026 3.242549 AGTCCTTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
7183 8027 2.830321 AGTCCTTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
7184 8028 3.260128 AGTCCTTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
7185 8029 3.370061 GTCCTTCCGTTCCGAATTACTTG 59.630 47.826 0.00 0.00 0.00 3.16
7186 8030 3.007182 TCCTTCCGTTCCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
7187 8031 3.370061 CCTTCCGTTCCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
7188 8032 2.598589 TCCGTTCCGAATTACTTGTCG 58.401 47.619 0.00 0.00 37.01 4.35
7189 8033 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
7190 8034 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.187567 GCATGACCTGGCCTTGGTTT 61.188 55.000 19.39 9.76 38.03 3.27
59 60 3.192466 ACTGTGTTGGTACTTTCGTGTC 58.808 45.455 0.00 0.00 0.00 3.67
60 61 3.255969 ACTGTGTTGGTACTTTCGTGT 57.744 42.857 0.00 0.00 0.00 4.49
87 88 1.511305 GAAGGCATCCTCGTCGTGA 59.489 57.895 0.00 0.00 30.89 4.35
98 99 0.749454 GGGATTGCTGTCGAAGGCAT 60.749 55.000 13.12 5.35 46.42 4.40
99 100 1.377202 GGGATTGCTGTCGAAGGCA 60.377 57.895 9.11 9.11 43.93 4.75
104 105 1.613317 ATCCGTGGGATTGCTGTCGA 61.613 55.000 0.00 0.00 39.79 4.20
150 151 0.250124 CCGGTAGGAATTATGGCGCA 60.250 55.000 10.83 0.00 41.02 6.09
151 152 1.574702 GCCGGTAGGAATTATGGCGC 61.575 60.000 1.90 0.00 41.02 6.53
198 200 6.316319 ACGTATCGCCGTTTTCAATTTTTAT 58.684 32.000 0.00 0.00 37.96 1.40
243 397 2.235402 GGGTTCTAGTTCGTCCATCCAA 59.765 50.000 0.00 0.00 0.00 3.53
313 922 1.387737 CTTTGGCCCCAAGGATCCA 59.612 57.895 15.82 0.00 37.24 3.41
368 977 3.070878 GGGGAAAAGATGCTTGGAAAACA 59.929 43.478 0.00 0.00 0.00 2.83
376 985 4.051661 TGATGAAGGGGAAAAGATGCTT 57.948 40.909 0.00 0.00 0.00 3.91
441 1052 7.955324 TCGCGGAATATTTTCGATATCATTTTC 59.045 33.333 6.13 0.47 32.28 2.29
449 1060 4.804665 TGTTGTCGCGGAATATTTTCGATA 59.195 37.500 6.13 7.84 32.28 2.92
463 1074 1.282817 TCCGGATATTTGTTGTCGCG 58.717 50.000 0.00 0.00 0.00 5.87
465 1076 6.156519 TCATAGATCCGGATATTTGTTGTCG 58.843 40.000 23.22 3.44 0.00 4.35
469 1080 7.826252 CCTCAATCATAGATCCGGATATTTGTT 59.174 37.037 23.22 15.46 0.00 2.83
470 1081 7.334090 CCTCAATCATAGATCCGGATATTTGT 58.666 38.462 23.22 11.98 0.00 2.83
490 1102 0.693049 GTTTGAGCCTCTCCCCTCAA 59.307 55.000 0.00 0.00 43.98 3.02
491 1103 1.201429 GGTTTGAGCCTCTCCCCTCA 61.201 60.000 0.00 0.00 36.38 3.86
525 1137 0.615331 ACAATGGCGATGTGAGGAGT 59.385 50.000 0.00 0.00 0.00 3.85
526 1138 1.742761 AACAATGGCGATGTGAGGAG 58.257 50.000 0.00 0.00 0.00 3.69
558 1173 8.846211 CATGGGTTAATTAGTTTAATCATCGGT 58.154 33.333 0.00 0.00 33.29 4.69
594 1209 2.651455 AGACCGATAATCACCGTCAGA 58.349 47.619 0.00 0.00 0.00 3.27
595 1210 4.768130 ATAGACCGATAATCACCGTCAG 57.232 45.455 0.00 0.00 0.00 3.51
673 1316 1.358759 CACACACCCGCTGGTTTTC 59.641 57.895 0.00 0.00 44.75 2.29
1059 1712 4.323843 CGGCGGTATCGTCCTCCG 62.324 72.222 0.00 9.87 46.74 4.63
1386 2039 4.387343 ATGGGGTGCTGCTTGGGG 62.387 66.667 0.00 0.00 0.00 4.96
1387 2040 2.757099 GATGGGGTGCTGCTTGGG 60.757 66.667 0.00 0.00 0.00 4.12
1388 2041 2.757099 GGATGGGGTGCTGCTTGG 60.757 66.667 0.00 0.00 0.00 3.61
1389 2042 2.757099 GGGATGGGGTGCTGCTTG 60.757 66.667 0.00 0.00 0.00 4.01
1390 2043 4.066139 GGGGATGGGGTGCTGCTT 62.066 66.667 0.00 0.00 0.00 3.91
1392 2045 4.828296 CTGGGGATGGGGTGCTGC 62.828 72.222 0.00 0.00 0.00 5.25
1393 2046 4.828296 GCTGGGGATGGGGTGCTG 62.828 72.222 0.00 0.00 0.00 4.41
1764 2432 4.626081 CGGTCATCGATGGGGGCC 62.626 72.222 24.61 18.70 42.43 5.80
1857 2534 2.437897 CTGGGCCTGGTTCTGCTT 59.562 61.111 4.53 0.00 0.00 3.91
2042 2728 1.839994 AGCGAGGAATCTTTGGATCCA 59.160 47.619 11.44 11.44 0.00 3.41
2098 2784 1.986575 GCAGCTTCATCTTCACGGCC 61.987 60.000 0.00 0.00 0.00 6.13
2184 2870 4.164604 TCACCATGATCATCTGATTCCACA 59.835 41.667 4.86 0.00 34.37 4.17
2304 2996 1.828979 TTTCAGCAGCATCAGCATCA 58.171 45.000 0.00 0.00 45.49 3.07
2305 2997 4.563337 TTATTTCAGCAGCATCAGCATC 57.437 40.909 0.00 0.00 45.49 3.91
2306 2998 4.994907 TTTATTTCAGCAGCATCAGCAT 57.005 36.364 0.00 0.00 45.49 3.79
2307 2999 4.678622 CATTTATTTCAGCAGCATCAGCA 58.321 39.130 0.00 0.00 45.49 4.41
2308 3000 3.489785 GCATTTATTTCAGCAGCATCAGC 59.510 43.478 0.00 0.00 42.56 4.26
2309 3001 4.049186 GGCATTTATTTCAGCAGCATCAG 58.951 43.478 0.00 0.00 0.00 2.90
2368 3060 1.153289 CCGGTTCCTCATCAGGCTG 60.153 63.158 8.58 8.58 40.12 4.85
2375 3067 2.933287 TGTGCCCCGGTTCCTCAT 60.933 61.111 0.00 0.00 0.00 2.90
2543 3235 5.181748 CCTCCATTTCACCTCTAACTTGAG 58.818 45.833 0.00 0.00 0.00 3.02
2567 3259 4.771114 TTTCCAAGTTCACTCTCCAGAA 57.229 40.909 0.00 0.00 0.00 3.02
2572 3264 6.260936 TGAAGTTCATTTCCAAGTTCACTCTC 59.739 38.462 0.08 0.00 37.97 3.20
2588 3280 3.216800 TCAGCTGCAACTTGAAGTTCAT 58.783 40.909 9.47 0.00 36.03 2.57
2602 3294 1.020437 GGAGCCACTATTTCAGCTGC 58.980 55.000 9.47 0.00 35.23 5.25
2603 3295 2.012673 GTGGAGCCACTATTTCAGCTG 58.987 52.381 7.63 7.63 43.12 4.24
2606 3298 3.055530 ACTCTGTGGAGCCACTATTTCAG 60.056 47.826 19.47 8.40 46.30 3.02
2613 3305 0.394565 GTTCACTCTGTGGAGCCACT 59.605 55.000 19.47 0.00 46.30 4.00
2615 3307 0.764369 AGGTTCACTCTGTGGAGCCA 60.764 55.000 4.76 0.00 40.07 4.75
2621 3313 3.797039 TCAGTTTCAGGTTCACTCTGTG 58.203 45.455 0.00 0.00 34.15 3.66
2622 3314 4.080863 AGTTCAGTTTCAGGTTCACTCTGT 60.081 41.667 0.00 0.00 34.15 3.41
2654 3346 2.361104 GAGCCGCCATTTCACCCA 60.361 61.111 0.00 0.00 0.00 4.51
2673 3365 5.491982 AGTTCAGTTTCAAGTTCACTCTGT 58.508 37.500 0.00 0.00 0.00 3.41
2727 3419 2.474816 AGCTCAGTTTCACGTTCACTC 58.525 47.619 0.00 0.00 0.00 3.51
2745 3437 1.032014 TTTCACCTGCAACCTGAAGC 58.968 50.000 0.00 0.00 0.00 3.86
2751 3443 0.890683 CCTCCATTTCACCTGCAACC 59.109 55.000 0.00 0.00 0.00 3.77
2826 3518 5.402398 AGTTCTGTTTCAAGTTCACTTTGC 58.598 37.500 0.00 0.00 33.11 3.68
3380 4072 5.327091 CACGCTCAATTTCTATTTGTGGAG 58.673 41.667 0.00 0.00 0.00 3.86
3401 4093 2.033424 GCCACTTGAAGTTCAGTTCCAC 59.967 50.000 5.56 0.00 0.00 4.02
3460 4152 3.203716 GTGGAGTTTCCTCGACAAGTTT 58.796 45.455 0.75 0.00 43.62 2.66
3558 4262 3.874383 TCCATTTGTGGAGTTTCCTCA 57.126 42.857 0.00 0.00 39.64 3.86
3683 4387 4.546674 TCTAGTAGGATCACCATCAGCAA 58.453 43.478 0.00 0.00 38.94 3.91
3817 4521 5.690464 ACTAAATCAGGCAGAGAATCACT 57.310 39.130 0.00 0.00 37.82 3.41
3866 4570 9.695526 CTTGAATTTGAGTATCTAGAGGATCAG 57.304 37.037 0.00 0.00 33.77 2.90
3886 4590 6.741992 TTCATCTGCACGTTTATCTTGAAT 57.258 33.333 0.00 0.00 0.00 2.57
4014 4718 0.812811 CCTGTCCATGCTCATCGGTG 60.813 60.000 0.00 0.00 0.00 4.94
4015 4719 1.524002 CCTGTCCATGCTCATCGGT 59.476 57.895 0.00 0.00 0.00 4.69
4062 4766 7.041848 AGCATTGTTTCCTCATTGTTTAAAAGC 60.042 33.333 0.00 0.00 0.00 3.51
4063 4767 8.369218 AGCATTGTTTCCTCATTGTTTAAAAG 57.631 30.769 0.00 0.00 0.00 2.27
4125 4829 1.202580 GCAGCACGATCAGGTAGGAAT 60.203 52.381 0.00 0.00 0.00 3.01
4128 4832 0.529337 CTGCAGCACGATCAGGTAGG 60.529 60.000 0.00 0.00 0.00 3.18
4317 5021 3.760580 AGTGTAGCTTGTCTCTTTGCT 57.239 42.857 0.00 0.00 39.30 3.91
4466 5170 4.676924 CCTGAGATTTGCGACAAAAAGAAC 59.323 41.667 8.65 2.29 0.00 3.01
4511 5216 8.862325 TTCTGTATAGTGGACATGTTCAAATT 57.138 30.769 8.85 0.22 0.00 1.82
4600 5305 3.006247 GTCTGATGGTCAGGAAAGCTTC 58.994 50.000 0.00 0.00 44.39 3.86
4729 5434 1.879380 TGAACGAAAATGAGGGCACAG 59.121 47.619 0.00 0.00 0.00 3.66
4744 5449 3.345714 GCTGCACGAAGAATAATGAACG 58.654 45.455 0.00 0.00 0.00 3.95
4766 5471 6.829811 AGTTACCCTCTCTAGCTAGTTTACTG 59.170 42.308 20.10 8.60 0.00 2.74
4782 5491 6.094193 AGTTGTACAGTAACAGTTACCCTC 57.906 41.667 18.27 8.60 36.81 4.30
4807 5516 3.453353 AGCGCAACCCCTAGTATTAAAGA 59.547 43.478 11.47 0.00 0.00 2.52
4822 5531 0.874390 TCATTGGTGAGAAGCGCAAC 59.126 50.000 11.47 2.34 0.00 4.17
4924 5633 6.420903 CACAGTTAGAGAAGAACAATGACGAA 59.579 38.462 0.00 0.00 0.00 3.85
4954 5664 1.822990 AGGACAGAAATGCAATGCTGG 59.177 47.619 14.46 0.00 34.83 4.85
5017 5727 4.517453 CCTGGTGAAATGAGAAACCGTTTA 59.483 41.667 0.00 0.00 35.33 2.01
5022 5732 3.154827 TCCCTGGTGAAATGAGAAACC 57.845 47.619 0.00 0.00 0.00 3.27
5252 5969 3.443045 GCCAGGAATGTGCACCCG 61.443 66.667 15.69 5.12 0.00 5.28
5299 6016 3.037549 TGGCTTGGTCCAAAAGTTCAAT 58.962 40.909 5.64 0.00 32.18 2.57
5343 6060 3.826157 TCGAGAAAACAAATGCCTCCATT 59.174 39.130 0.00 0.00 43.32 3.16
5376 6131 0.712380 ATGCCTCCAGGACCCATTTT 59.288 50.000 0.00 0.00 37.39 1.82
5422 6177 2.061848 TCCAATCCTGGGTTCAAGACA 58.938 47.619 0.00 0.00 43.71 3.41
5465 6220 4.837093 ATCGGTCCACCTAAAGAAATGA 57.163 40.909 0.00 0.00 0.00 2.57
5530 6286 5.315645 ACATGGTATTCATATTCCCATCCCA 59.684 40.000 0.00 0.00 33.70 4.37
5531 6287 5.831103 ACATGGTATTCATATTCCCATCCC 58.169 41.667 0.00 0.00 33.70 3.85
5585 6341 8.854312 GCAGAAAAAGAGCAAATATCTTTGTAC 58.146 33.333 5.57 0.00 44.25 2.90
5590 6346 9.018582 ACTAAGCAGAAAAAGAGCAAATATCTT 57.981 29.630 0.00 0.00 38.65 2.40
5594 6350 7.445402 ACAGACTAAGCAGAAAAAGAGCAAATA 59.555 33.333 0.00 0.00 0.00 1.40
5596 6352 5.590259 ACAGACTAAGCAGAAAAAGAGCAAA 59.410 36.000 0.00 0.00 0.00 3.68
5641 6397 1.281867 TCATCGAATGGGGGATATGGC 59.718 52.381 0.00 0.00 0.00 4.40
5698 6456 2.069273 CGAAAGCCAAGACTGACGATT 58.931 47.619 0.00 0.00 0.00 3.34
5718 6476 0.037605 CACGTACAGGAACCCAGGAC 60.038 60.000 0.00 0.00 0.00 3.85
5739 6497 0.250727 TTCAGTAAGTGGGCACAGGC 60.251 55.000 0.00 0.00 40.13 4.85
5748 6506 7.772332 AACTGTAGAGTTGTTTCAGTAAGTG 57.228 36.000 4.15 0.00 41.12 3.16
5877 6635 3.134458 CACGGCCTGAAAATAGGAGATC 58.866 50.000 0.00 0.00 40.42 2.75
5904 6662 6.071616 ACCAAGAAAAGTTGTTTCAGTAAGCA 60.072 34.615 2.00 0.00 0.00 3.91
5943 6701 2.129607 GTTGACAAACTAGTCGCCGAA 58.870 47.619 0.00 0.00 41.41 4.30
5969 6727 1.338200 GGCACAGGTACACAGGAAGAG 60.338 57.143 0.00 0.00 0.00 2.85
5977 6735 4.732784 CATATGTTTTGGCACAGGTACAC 58.267 43.478 0.00 0.00 42.39 2.90
6015 6786 5.220854 CCCGTTCAGTTGAATAAAGCATAGG 60.221 44.000 0.00 0.00 36.33 2.57
6037 6810 3.645268 AATTCACTCCCCGCAGCCC 62.645 63.158 0.00 0.00 0.00 5.19
6039 6812 0.178068 TAGAATTCACTCCCCGCAGC 59.822 55.000 8.44 0.00 0.00 5.25
6040 6813 1.207089 TGTAGAATTCACTCCCCGCAG 59.793 52.381 8.44 0.00 0.00 5.18
6041 6814 1.207089 CTGTAGAATTCACTCCCCGCA 59.793 52.381 8.44 0.00 0.00 5.69
6042 6815 1.480954 TCTGTAGAATTCACTCCCCGC 59.519 52.381 8.44 0.00 0.00 6.13
6043 6816 3.639094 AGATCTGTAGAATTCACTCCCCG 59.361 47.826 8.44 0.00 0.00 5.73
6044 6817 4.742138 GCAGATCTGTAGAATTCACTCCCC 60.742 50.000 23.38 0.00 0.00 4.81
6045 6818 4.100808 AGCAGATCTGTAGAATTCACTCCC 59.899 45.833 23.38 2.13 0.00 4.30
6046 6819 5.275067 AGCAGATCTGTAGAATTCACTCC 57.725 43.478 23.38 2.56 0.00 3.85
6047 6820 5.458452 CGAAGCAGATCTGTAGAATTCACTC 59.542 44.000 23.38 2.76 0.00 3.51
6048 6821 5.347342 CGAAGCAGATCTGTAGAATTCACT 58.653 41.667 23.38 6.26 0.00 3.41
6049 6822 5.633996 CGAAGCAGATCTGTAGAATTCAC 57.366 43.478 23.38 3.99 0.00 3.18
6070 6871 2.032178 GGCCTGAAAATAACTAGCAGCG 59.968 50.000 0.00 0.00 0.00 5.18
6170 6971 2.683933 GGACTTCCCCAGCTCGGA 60.684 66.667 0.00 0.00 36.56 4.55
6172 6973 1.333636 ATCAGGACTTCCCCAGCTCG 61.334 60.000 0.00 0.00 36.42 5.03
6184 6985 0.249826 GCTGGCTAGCTCATCAGGAC 60.250 60.000 15.78 0.00 46.57 3.85
6208 7009 2.680841 TGGAGCACAAGTTACAACACAC 59.319 45.455 0.00 0.00 0.00 3.82
6223 7024 1.273606 GACAGACAGTAAGCTGGAGCA 59.726 52.381 0.65 0.00 46.62 4.26
6235 7057 4.938080 ACTAACAACAGACAGACAGACAG 58.062 43.478 0.00 0.00 0.00 3.51
6236 7058 5.339008 AACTAACAACAGACAGACAGACA 57.661 39.130 0.00 0.00 0.00 3.41
6237 7059 6.586844 GGATAACTAACAACAGACAGACAGAC 59.413 42.308 0.00 0.00 0.00 3.51
6238 7060 6.295123 GGGATAACTAACAACAGACAGACAGA 60.295 42.308 0.00 0.00 0.00 3.41
6312 7139 6.150396 AGCATAAGACCACATAGTACAGAC 57.850 41.667 0.00 0.00 0.00 3.51
6342 7169 3.707102 AGGGATCTAACAACCAGACTAGC 59.293 47.826 0.00 0.00 0.00 3.42
6343 7170 6.130569 ACTAGGGATCTAACAACCAGACTAG 58.869 44.000 0.00 0.00 0.00 2.57
6345 7172 4.949121 ACTAGGGATCTAACAACCAGACT 58.051 43.478 0.00 0.00 0.00 3.24
6350 7182 5.678955 ACTCAACTAGGGATCTAACAACC 57.321 43.478 0.00 0.00 0.00 3.77
6361 7193 5.467063 GTGACTTCTTTCAACTCAACTAGGG 59.533 44.000 0.00 0.00 0.00 3.53
6362 7194 6.049149 TGTGACTTCTTTCAACTCAACTAGG 58.951 40.000 0.00 0.00 0.00 3.02
6363 7195 7.721286 ATGTGACTTCTTTCAACTCAACTAG 57.279 36.000 0.00 0.00 0.00 2.57
6364 7196 8.506168 AAATGTGACTTCTTTCAACTCAACTA 57.494 30.769 0.00 0.00 0.00 2.24
6365 7197 7.396540 AAATGTGACTTCTTTCAACTCAACT 57.603 32.000 0.00 0.00 0.00 3.16
6366 7198 6.693113 GGAAATGTGACTTCTTTCAACTCAAC 59.307 38.462 7.68 0.00 31.91 3.18
6367 7199 6.603201 AGGAAATGTGACTTCTTTCAACTCAA 59.397 34.615 7.68 0.00 31.91 3.02
6368 7200 6.122277 AGGAAATGTGACTTCTTTCAACTCA 58.878 36.000 7.68 0.00 31.91 3.41
6400 7235 0.397941 CACCAGCCACTTCTTCCTCA 59.602 55.000 0.00 0.00 0.00 3.86
6401 7236 0.322008 CCACCAGCCACTTCTTCCTC 60.322 60.000 0.00 0.00 0.00 3.71
6413 7248 3.325753 AGAGGAGGCACCACCAGC 61.326 66.667 3.18 0.00 43.14 4.85
6425 7260 1.078159 TGCTTACCCTGTACCAGAGGA 59.922 52.381 0.00 0.00 32.44 3.71
6426 7261 1.568504 TGCTTACCCTGTACCAGAGG 58.431 55.000 0.00 0.00 32.44 3.69
6447 7282 0.250513 GCTAAGCTACAGGGCAGTGT 59.749 55.000 0.00 0.00 34.17 3.55
6452 7287 1.740025 CAACAAGCTAAGCTACAGGGC 59.260 52.381 0.00 0.00 38.25 5.19
6542 7380 0.094730 GAGCGCAACACGGAACATAC 59.905 55.000 11.47 0.00 43.93 2.39
6558 7396 2.016096 GCAAGGTGAATCAGGAGGAGC 61.016 57.143 0.00 0.00 0.00 4.70
6579 7417 1.664649 GCCCTTTTTGCGGCACTTC 60.665 57.895 0.05 0.00 45.01 3.01
6586 7424 3.267597 CTCCGGTGCCCTTTTTGCG 62.268 63.158 0.00 0.00 0.00 4.85
6589 7427 2.600470 GCCTCCGGTGCCCTTTTT 60.600 61.111 0.00 0.00 0.00 1.94
6605 7443 4.756458 AGCTGCTGGCAGACGAGC 62.756 66.667 24.40 20.30 46.30 5.03
6606 7444 2.508887 GAGCTGCTGGCAGACGAG 60.509 66.667 24.40 11.28 46.30 4.18
6607 7445 2.993840 AGAGCTGCTGGCAGACGA 60.994 61.111 24.40 0.00 46.30 4.20
6608 7446 2.814341 CAGAGCTGCTGGCAGACG 60.814 66.667 24.40 8.96 46.30 4.18
6618 7456 2.740981 CAAAACTGTAGGAGCAGAGCTG 59.259 50.000 0.00 0.00 39.88 4.24
6619 7457 2.289945 CCAAAACTGTAGGAGCAGAGCT 60.290 50.000 0.00 0.00 43.88 4.09
6651 7489 4.508662 GTTAGATGAACCAAGACTCCCTG 58.491 47.826 0.00 0.00 31.20 4.45
6661 7499 6.462487 GAGGATCATAACGGTTAGATGAACCA 60.462 42.308 23.62 2.20 46.94 3.67
6662 7500 5.927115 GAGGATCATAACGGTTAGATGAACC 59.073 44.000 18.21 18.21 44.71 3.62
6663 7501 5.927115 GGAGGATCATAACGGTTAGATGAAC 59.073 44.000 9.65 7.57 36.25 3.18
6664 7502 5.839063 AGGAGGATCATAACGGTTAGATGAA 59.161 40.000 9.65 0.00 36.25 2.57
6666 7504 5.243954 TCAGGAGGATCATAACGGTTAGATG 59.756 44.000 6.74 2.31 36.25 2.90
6667 7505 5.394738 TCAGGAGGATCATAACGGTTAGAT 58.605 41.667 6.74 9.03 36.25 1.98
6668 7506 4.800023 TCAGGAGGATCATAACGGTTAGA 58.200 43.478 6.74 4.94 36.25 2.10
6669 7507 5.473931 CATCAGGAGGATCATAACGGTTAG 58.526 45.833 6.74 0.00 36.25 2.34
6670 7508 4.262463 GCATCAGGAGGATCATAACGGTTA 60.262 45.833 2.62 2.62 36.25 2.85
6671 7509 3.495100 GCATCAGGAGGATCATAACGGTT 60.495 47.826 0.00 0.00 36.25 4.44
6673 7511 2.037641 TGCATCAGGAGGATCATAACGG 59.962 50.000 0.00 0.00 36.25 4.44
6674 7512 3.062763 GTGCATCAGGAGGATCATAACG 58.937 50.000 0.00 0.00 36.25 3.18
6675 7513 3.072184 AGGTGCATCAGGAGGATCATAAC 59.928 47.826 0.00 0.00 36.25 1.89
6676 7514 3.321039 AGGTGCATCAGGAGGATCATAA 58.679 45.455 0.00 0.00 36.25 1.90
6677 7515 2.981921 AGGTGCATCAGGAGGATCATA 58.018 47.619 0.00 0.00 36.25 2.15
6678 7516 1.817087 AGGTGCATCAGGAGGATCAT 58.183 50.000 0.00 0.00 36.25 2.45
6679 7517 1.211212 CAAGGTGCATCAGGAGGATCA 59.789 52.381 0.00 0.00 36.25 2.92
6680 7518 1.211457 ACAAGGTGCATCAGGAGGATC 59.789 52.381 0.00 0.00 32.57 3.36
6681 7519 1.064906 CACAAGGTGCATCAGGAGGAT 60.065 52.381 0.00 0.00 36.39 3.24
6682 7520 0.325933 CACAAGGTGCATCAGGAGGA 59.674 55.000 0.00 0.00 0.00 3.71
6700 7538 4.012374 CCTATTTGCAGAGCCTTCTTTCA 58.988 43.478 0.00 0.00 0.00 2.69
6704 7542 1.409381 GCCCTATTTGCAGAGCCTTCT 60.409 52.381 0.00 0.00 0.00 2.85
6705 7543 1.028130 GCCCTATTTGCAGAGCCTTC 58.972 55.000 0.00 0.00 0.00 3.46
6706 7544 0.396278 GGCCCTATTTGCAGAGCCTT 60.396 55.000 0.00 0.00 37.42 4.35
6707 7545 1.228510 GGCCCTATTTGCAGAGCCT 59.771 57.895 0.00 0.00 37.42 4.58
6709 7547 0.957362 GATGGCCCTATTTGCAGAGC 59.043 55.000 0.00 0.00 0.00 4.09
6711 7549 1.565759 ACAGATGGCCCTATTTGCAGA 59.434 47.619 0.00 0.00 0.00 4.26
6712 7550 1.679680 CACAGATGGCCCTATTTGCAG 59.320 52.381 0.00 0.00 0.00 4.41
6715 7553 2.947652 CTCACACAGATGGCCCTATTTG 59.052 50.000 0.00 0.00 0.00 2.32
6716 7554 2.846206 TCTCACACAGATGGCCCTATTT 59.154 45.455 0.00 0.00 0.00 1.40
6717 7555 2.437281 CTCTCACACAGATGGCCCTATT 59.563 50.000 0.00 0.00 0.00 1.73
6718 7556 2.045524 CTCTCACACAGATGGCCCTAT 58.954 52.381 0.00 0.00 0.00 2.57
6719 7557 1.489481 CTCTCACACAGATGGCCCTA 58.511 55.000 0.00 0.00 0.00 3.53
6720 7558 1.270414 CCTCTCACACAGATGGCCCT 61.270 60.000 0.00 0.00 0.00 5.19
6721 7559 1.222936 CCTCTCACACAGATGGCCC 59.777 63.158 0.00 0.00 0.00 5.80
6722 7560 0.326264 AACCTCTCACACAGATGGCC 59.674 55.000 0.00 0.00 0.00 5.36
6723 7561 1.002430 TGAACCTCTCACACAGATGGC 59.998 52.381 0.00 0.00 0.00 4.40
6724 7562 3.055602 TCATGAACCTCTCACACAGATGG 60.056 47.826 0.00 0.00 36.69 3.51
6725 7563 4.182339 CTCATGAACCTCTCACACAGATG 58.818 47.826 0.00 0.00 36.69 2.90
6726 7564 3.369261 GCTCATGAACCTCTCACACAGAT 60.369 47.826 0.00 0.00 36.69 2.90
6727 7565 2.028658 GCTCATGAACCTCTCACACAGA 60.029 50.000 0.00 0.00 36.69 3.41
6728 7566 2.028294 AGCTCATGAACCTCTCACACAG 60.028 50.000 0.00 0.00 36.69 3.66
6729 7567 1.973515 AGCTCATGAACCTCTCACACA 59.026 47.619 0.00 0.00 36.69 3.72
6767 7605 1.065401 CGCTTCTGTTTTGGCACTTCA 59.935 47.619 0.00 0.00 0.00 3.02
6768 7606 1.065551 ACGCTTCTGTTTTGGCACTTC 59.934 47.619 0.00 0.00 0.00 3.01
6780 7618 1.739562 GGTCTCCAGCACGCTTCTG 60.740 63.158 0.00 0.00 0.00 3.02
6817 7655 1.213733 TATCTCGGCTCGACGACTCG 61.214 60.000 0.00 0.81 41.65 4.18
6818 7656 0.509499 CTATCTCGGCTCGACGACTC 59.491 60.000 0.00 0.00 38.06 3.36
6819 7657 0.104487 TCTATCTCGGCTCGACGACT 59.896 55.000 0.00 0.00 38.06 4.18
6820 7658 1.136197 CATCTATCTCGGCTCGACGAC 60.136 57.143 0.00 0.00 38.06 4.34
6821 7659 1.149148 CATCTATCTCGGCTCGACGA 58.851 55.000 0.00 0.00 41.13 4.20
6822 7660 0.167033 CCATCTATCTCGGCTCGACG 59.833 60.000 0.00 0.00 0.00 5.12
6823 7661 0.109504 GCCATCTATCTCGGCTCGAC 60.110 60.000 0.00 0.00 42.78 4.20
6824 7662 1.244697 GGCCATCTATCTCGGCTCGA 61.245 60.000 0.00 0.00 45.50 4.04
6825 7663 1.214062 GGCCATCTATCTCGGCTCG 59.786 63.158 0.00 0.00 45.50 5.03
6826 7664 0.681733 TTGGCCATCTATCTCGGCTC 59.318 55.000 6.09 0.00 45.50 4.70
6827 7665 1.131638 TTTGGCCATCTATCTCGGCT 58.868 50.000 6.09 0.00 45.50 5.52
6860 7698 8.715190 TCATATTCATTCATTCATTCCCACAT 57.285 30.769 0.00 0.00 0.00 3.21
6861 7699 7.781219 ACTCATATTCATTCATTCATTCCCACA 59.219 33.333 0.00 0.00 0.00 4.17
6866 7707 9.880064 CACTCACTCATATTCATTCATTCATTC 57.120 33.333 0.00 0.00 0.00 2.67
6876 7717 8.055181 ACCAAATTACCACTCACTCATATTCAT 58.945 33.333 0.00 0.00 0.00 2.57
6877 7718 7.402054 ACCAAATTACCACTCACTCATATTCA 58.598 34.615 0.00 0.00 0.00 2.57
6878 7719 7.865706 ACCAAATTACCACTCACTCATATTC 57.134 36.000 0.00 0.00 0.00 1.75
6879 7720 7.122650 CCAACCAAATTACCACTCACTCATATT 59.877 37.037 0.00 0.00 0.00 1.28
6880 7721 6.603201 CCAACCAAATTACCACTCACTCATAT 59.397 38.462 0.00 0.00 0.00 1.78
6881 7722 5.943416 CCAACCAAATTACCACTCACTCATA 59.057 40.000 0.00 0.00 0.00 2.15
6893 7734 4.616953 CTGGAACACACCAACCAAATTAC 58.383 43.478 0.00 0.00 39.59 1.89
6932 7773 2.799978 GGAAAAAGCCCGACAAATGTTG 59.200 45.455 0.00 0.00 0.00 3.33
6947 7788 2.167487 GGACACACCAAGCAAGGAAAAA 59.833 45.455 1.01 0.00 38.79 1.94
6952 7793 1.151450 AGGGACACACCAAGCAAGG 59.849 57.895 0.00 0.00 41.20 3.61
6954 7795 0.478072 ATCAGGGACACACCAAGCAA 59.522 50.000 0.00 0.00 41.20 3.91
6956 7797 1.270550 CAAATCAGGGACACACCAAGC 59.729 52.381 0.00 0.00 41.20 4.01
6957 7798 2.816087 CTCAAATCAGGGACACACCAAG 59.184 50.000 0.00 0.00 41.20 3.61
6958 7799 2.441375 TCTCAAATCAGGGACACACCAA 59.559 45.455 0.00 0.00 41.20 3.67
6960 7801 2.616510 CCTCTCAAATCAGGGACACACC 60.617 54.545 0.00 0.00 38.08 4.16
6961 7802 2.303022 TCCTCTCAAATCAGGGACACAC 59.697 50.000 0.00 0.00 0.00 3.82
6962 7803 2.619931 TCCTCTCAAATCAGGGACACA 58.380 47.619 0.00 0.00 0.00 3.72
6963 7804 3.244561 TGTTCCTCTCAAATCAGGGACAC 60.245 47.826 0.00 0.00 42.57 3.67
7031 7875 0.321346 TGCCTCGCATCACTTCAGAA 59.679 50.000 0.00 0.00 31.71 3.02
7038 7882 1.089920 AACATCTTGCCTCGCATCAC 58.910 50.000 0.00 0.00 38.76 3.06
7087 7931 9.155785 AGTTAGTTGGTTGCTATACCTATACAT 57.844 33.333 0.00 0.00 39.04 2.29
7088 7932 8.543293 AGTTAGTTGGTTGCTATACCTATACA 57.457 34.615 0.00 0.00 39.04 2.29
7089 7933 9.905171 GTAGTTAGTTGGTTGCTATACCTATAC 57.095 37.037 0.00 0.00 39.04 1.47
7090 7934 9.082313 GGTAGTTAGTTGGTTGCTATACCTATA 57.918 37.037 0.00 0.00 39.04 1.31
7091 7935 7.788385 AGGTAGTTAGTTGGTTGCTATACCTAT 59.212 37.037 0.00 0.00 34.85 2.57
7092 7936 7.069085 CAGGTAGTTAGTTGGTTGCTATACCTA 59.931 40.741 0.00 0.00 34.60 3.08
7093 7937 5.962641 AGGTAGTTAGTTGGTTGCTATACCT 59.037 40.000 0.00 0.00 39.04 3.08
7094 7938 6.047231 CAGGTAGTTAGTTGGTTGCTATACC 58.953 44.000 0.00 0.00 38.73 2.73
7110 7954 9.314321 CACGATTCAGTAATAATTCAGGTAGTT 57.686 33.333 0.00 0.00 0.00 2.24
7111 7955 8.475639 ACACGATTCAGTAATAATTCAGGTAGT 58.524 33.333 0.00 0.00 0.00 2.73
7112 7956 8.873215 ACACGATTCAGTAATAATTCAGGTAG 57.127 34.615 0.00 0.00 0.00 3.18
7113 7957 9.093970 CAACACGATTCAGTAATAATTCAGGTA 57.906 33.333 0.00 0.00 0.00 3.08
7114 7958 7.065803 CCAACACGATTCAGTAATAATTCAGGT 59.934 37.037 0.00 0.00 0.00 4.00
7115 7959 7.279981 TCCAACACGATTCAGTAATAATTCAGG 59.720 37.037 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.