Multiple sequence alignment - TraesCS2A01G567600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G567600 chr2A 100.000 8571 0 0 1 8571 766392807 766401377 0.000000e+00 15828.0
1 TraesCS2A01G567600 chr2A 92.333 1526 76 15 3897 5410 962023 963519 0.000000e+00 2132.0
2 TraesCS2A01G567600 chr2A 93.026 975 52 11 1689 2648 960907 961880 0.000000e+00 1410.0
3 TraesCS2A01G567600 chr2A 88.701 885 56 16 5650 6497 970736 971613 0.000000e+00 1040.0
4 TraesCS2A01G567600 chr2A 86.770 839 75 22 7250 8075 971619 972434 0.000000e+00 902.0
5 TraesCS2A01G567600 chr2A 89.842 443 42 3 1659 2100 1174169 1174609 4.490000e-157 566.0
6 TraesCS2A01G567600 chr2A 85.974 385 36 10 8191 8571 1186468 1186838 6.240000e-106 396.0
7 TraesCS2A01G567600 chr2A 85.271 387 41 4 8190 8571 766405831 766406206 1.350000e-102 385.0
8 TraesCS2A01G567600 chr2A 92.520 254 18 1 5405 5658 970394 970646 6.320000e-96 363.0
9 TraesCS2A01G567600 chr2A 82.946 387 42 9 8190 8570 766403945 766404313 2.310000e-85 327.0
10 TraesCS2A01G567600 chr2A 82.124 386 40 16 7851 8208 766405407 766405791 3.890000e-78 303.0
11 TraesCS2A01G567600 chr2A 94.681 94 4 1 8478 8571 1090039 1090131 2.490000e-30 145.0
12 TraesCS2A01G567600 chr2A 87.903 124 13 2 255 376 63604160 63604283 2.490000e-30 145.0
13 TraesCS2A01G567600 chr2A 90.741 108 10 0 260 367 108272613 108272506 2.490000e-30 145.0
14 TraesCS2A01G567600 chr2A 98.113 53 1 0 6702 6754 766399458 766399510 9.160000e-15 93.5
15 TraesCS2A01G567600 chr2A 98.113 53 1 0 6652 6704 766399508 766399560 9.160000e-15 93.5
16 TraesCS2A01G567600 chr2A 100.000 39 0 0 140 178 525703 525741 1.190000e-08 73.1
17 TraesCS2A01G567600 chr2B 93.556 5152 233 29 1598 6704 10178068 10172971 0.000000e+00 7583.0
18 TraesCS2A01G567600 chr2B 88.794 1401 108 26 6705 8075 10173020 10171639 0.000000e+00 1672.0
19 TraesCS2A01G567600 chr2B 86.224 196 23 3 8378 8571 10087163 10086970 8.720000e-50 209.0
20 TraesCS2A01G567600 chr2B 91.304 115 8 2 253 367 146718007 146718119 1.150000e-33 156.0
21 TraesCS2A01G567600 chr2B 97.619 42 1 0 2700 2741 10176952 10176993 1.190000e-08 73.1
22 TraesCS2A01G567600 chr2B 93.182 44 3 0 612 655 736725114 736725157 2.000000e-06 65.8
23 TraesCS2A01G567600 chr2D 98.379 4011 58 5 2699 6704 641105345 641109353 0.000000e+00 7040.0
24 TraesCS2A01G567600 chr2D 94.927 1163 31 13 1450 2602 641104196 641105340 0.000000e+00 1796.0
25 TraesCS2A01G567600 chr2D 98.128 908 14 2 6703 7607 641109302 641110209 0.000000e+00 1580.0
26 TraesCS2A01G567600 chr2D 93.579 950 29 7 7639 8571 641110209 641111143 0.000000e+00 1387.0
27 TraesCS2A01G567600 chr2D 90.720 625 54 4 1659 2281 1760900 1761522 0.000000e+00 830.0
28 TraesCS2A01G567600 chr2D 87.597 516 25 14 690 1187 641103516 641104010 5.810000e-156 562.0
29 TraesCS2A01G567600 chr2D 96.271 295 11 0 5992 6286 1761524 1761818 1.290000e-132 484.0
30 TraesCS2A01G567600 chr2D 85.567 388 39 5 8190 8571 641117218 641117594 2.900000e-104 390.0
31 TraesCS2A01G567600 chr2D 85.156 384 38 10 8191 8571 1782485 1782852 8.120000e-100 375.0
32 TraesCS2A01G567600 chr2D 84.794 388 41 7 8190 8571 1672163 1672538 2.920000e-99 374.0
33 TraesCS2A01G567600 chr2D 84.536 388 36 10 8190 8571 641113729 641114098 6.320000e-96 363.0
34 TraesCS2A01G567600 chr2D 83.508 382 38 13 7851 8208 641116798 641117178 4.960000e-87 333.0
35 TraesCS2A01G567600 chr2D 90.374 187 4 2 1223 1399 641104014 641104196 5.170000e-57 233.0
36 TraesCS2A01G567600 chr2D 89.944 179 5 6 438 607 641103280 641103454 1.450000e-52 219.0
37 TraesCS2A01G567600 chr2D 95.833 96 4 0 155 250 641103003 641103098 1.150000e-33 156.0
38 TraesCS2A01G567600 chr2D 89.189 111 12 0 260 370 43919052 43918942 1.160000e-28 139.0
39 TraesCS2A01G567600 chr2D 96.000 50 2 0 129 178 672616 672665 1.980000e-11 82.4
40 TraesCS2A01G567600 chr7D 83.044 1958 213 62 4063 5961 631704982 631703085 0.000000e+00 1666.0
41 TraesCS2A01G567600 chr7D 80.952 231 40 4 1588 1814 596031485 596031715 6.840000e-41 180.0
42 TraesCS2A01G567600 chr7D 81.053 95 14 3 2641 2735 444375822 444375732 1.190000e-08 73.1
43 TraesCS2A01G567600 chr7A 86.581 775 81 11 4063 4816 736665323 736666095 0.000000e+00 833.0
44 TraesCS2A01G567600 chr7A 82.330 515 62 20 5237 5725 736666095 736666606 3.700000e-113 420.0
45 TraesCS2A01G567600 chr7A 95.455 66 3 0 3 68 254256239 254256174 1.180000e-18 106.0
46 TraesCS2A01G567600 chr7A 87.143 70 7 1 2632 2701 56727796 56727729 2.570000e-10 78.7
47 TraesCS2A01G567600 chr7A 89.796 49 4 1 612 660 556890465 556890512 2.580000e-05 62.1
48 TraesCS2A01G567600 chr6A 93.750 112 6 1 260 370 599052642 599052531 5.320000e-37 167.0
49 TraesCS2A01G567600 chr6A 87.273 110 11 3 259 367 57667002 57667109 1.170000e-23 122.0
50 TraesCS2A01G567600 chr6A 84.466 103 8 7 2640 2741 35634924 35635019 2.550000e-15 95.3
51 TraesCS2A01G567600 chr1B 93.939 99 6 0 1 99 502217792 502217890 5.360000e-32 150.0
52 TraesCS2A01G567600 chr5A 93.878 98 6 0 3 100 534560882 534560785 1.930000e-31 148.0
53 TraesCS2A01G567600 chr5A 92.982 57 2 1 612 666 528976369 528976313 1.980000e-11 82.4
54 TraesCS2A01G567600 chr4B 92.000 100 8 0 1 100 373765123 373765024 3.230000e-29 141.0
55 TraesCS2A01G567600 chr3A 96.341 82 3 0 1 82 20173522 20173603 1.500000e-27 135.0
56 TraesCS2A01G567600 chr5D 89.423 104 11 0 267 370 329645803 329645700 1.940000e-26 132.0
57 TraesCS2A01G567600 chr5D 92.188 64 1 4 2640 2702 402771553 402771493 4.260000e-13 87.9
58 TraesCS2A01G567600 chr4A 87.719 114 13 1 255 368 274596177 274596289 1.940000e-26 132.0
59 TraesCS2A01G567600 chr4A 95.122 41 1 1 2701 2741 427133102 427133141 7.180000e-06 63.9
60 TraesCS2A01G567600 chr7B 86.486 111 15 0 257 367 610351610 610351720 1.170000e-23 122.0
61 TraesCS2A01G567600 chr7B 93.750 48 2 1 613 660 336468267 336468313 4.290000e-08 71.3
62 TraesCS2A01G567600 chr3D 84.348 115 10 4 2639 2747 435678629 435678517 1.180000e-18 106.0
63 TraesCS2A01G567600 chr3D 91.176 68 2 4 2631 2698 534687145 534687082 1.190000e-13 89.8
64 TraesCS2A01G567600 chr1D 95.000 60 1 2 2639 2698 141706128 141706071 9.160000e-15 93.5
65 TraesCS2A01G567600 chr1A 90.769 65 4 2 2634 2698 130844529 130844467 1.530000e-12 86.1
66 TraesCS2A01G567600 chr6D 97.872 47 1 0 2701 2747 354840240 354840286 1.980000e-11 82.4
67 TraesCS2A01G567600 chr3B 93.750 48 3 0 608 655 165784532 165784579 1.190000e-08 73.1
68 TraesCS2A01G567600 chr3B 84.615 65 9 1 605 668 568420102 568420166 7.180000e-06 63.9
69 TraesCS2A01G567600 chr6B 90.909 44 4 0 2701 2744 153878459 153878502 9.290000e-05 60.2
70 TraesCS2A01G567600 chr4D 100.000 29 0 0 612 640 473142480 473142508 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G567600 chr2A 766392807 766401377 8570 False 5338.333333 15828 98.742000 1 8571 3 chr2A.!!$F8 8570
1 TraesCS2A01G567600 chr2A 960907 963519 2612 False 1771.000000 2132 92.679500 1689 5410 2 chr2A.!!$F6 3721
2 TraesCS2A01G567600 chr2A 970394 972434 2040 False 768.333333 1040 89.330333 5405 8075 3 chr2A.!!$F7 2670
3 TraesCS2A01G567600 chr2A 766403945 766406206 2261 False 338.333333 385 83.447000 7851 8571 3 chr2A.!!$F9 720
4 TraesCS2A01G567600 chr2B 10171639 10178068 6429 True 4627.500000 7583 91.175000 1598 8075 2 chr2B.!!$R2 6477
5 TraesCS2A01G567600 chr2D 641103003 641117594 14591 False 1278.090909 7040 91.124727 155 8571 11 chr2D.!!$F5 8416
6 TraesCS2A01G567600 chr2D 1760900 1761818 918 False 657.000000 830 93.495500 1659 6286 2 chr2D.!!$F4 4627
7 TraesCS2A01G567600 chr7D 631703085 631704982 1897 True 1666.000000 1666 83.044000 4063 5961 1 chr7D.!!$R2 1898
8 TraesCS2A01G567600 chr7A 736665323 736666606 1283 False 626.500000 833 84.455500 4063 5725 2 chr7A.!!$F2 1662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.035820 ATTTCGCCCGCCTCTTGTTA 60.036 50.000 0.00 0.0 0.00 2.41 F
645 758 0.040499 TTGCCCCACTTTACATCCCC 59.960 55.000 0.00 0.0 0.00 4.81 F
647 760 0.261696 GCCCCACTTTACATCCCCAT 59.738 55.000 0.00 0.0 0.00 4.00 F
1585 1738 0.320073 TTCTCACTACCGCCAAACCG 60.320 55.000 0.00 0.0 0.00 4.44 F
1804 1972 0.517755 TCGCTGACACGTCTTCTCTC 59.482 55.000 0.00 0.0 0.00 3.20 F
1905 2074 1.368641 TTGACATATGTGCTCCGTGC 58.631 50.000 14.43 0.0 43.25 5.34 F
3294 3492 1.569493 CAAACACCTGACCTTCGCG 59.431 57.895 0.00 0.0 0.00 5.87 F
4126 4447 2.484594 GGAGCTCTGTAGAAATGGAGGC 60.485 54.545 14.64 0.0 0.00 4.70 F
4566 4902 2.679837 GCTGAAGATCGCATTTGGAAGA 59.320 45.455 0.00 0.0 0.00 2.87 F
6063 6558 1.414919 TGAAGGTAGACTTGCAACCGT 59.585 47.619 0.00 0.0 40.21 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1413 1558 0.028902 GTTGACAGCAACCGACCAAC 59.971 55.000 0.00 0.00 46.80 3.77 R
1574 1727 0.037160 AAGTATTCCGGTTTGGCGGT 59.963 50.000 0.00 0.00 37.80 5.68 R
1804 1972 0.393537 GCTTCTCCATGTCCACCTGG 60.394 60.000 0.00 0.00 33.59 4.45 R
3506 3704 1.293179 GGCTTTGGTGCCCAATGTC 59.707 57.895 16.09 12.38 46.82 3.06 R
3732 3932 3.365767 GGAGCTCACATTCAGCAGTTTTC 60.366 47.826 17.19 0.00 39.56 2.29 R
3782 3982 4.323417 TGATCAGTATGCCGAAACAAGTT 58.677 39.130 0.00 0.00 34.76 2.66 R
4566 4902 1.650825 CGGCAGCAGGTTTTTGTTTT 58.349 45.000 0.00 0.00 0.00 2.43 R
5161 5503 4.766373 ACATACATGACAATGGAACTTGCA 59.234 37.500 0.00 0.00 38.19 4.08 R
6368 6892 0.855598 TACTGGTACCCGGATAGCCT 59.144 55.000 10.07 0.00 33.36 4.58 R
7745 8297 1.007118 TGACAGATGACAGGGAGGCTA 59.993 52.381 0.00 0.00 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.888736 CATTGTGAGACCGGTGCCAA 60.889 55.000 14.63 9.64 0.00 4.52
22 23 0.179004 TTGTGAGACCGGTGCCAAAT 60.179 50.000 14.63 0.00 0.00 2.32
24 25 1.072489 TGTGAGACCGGTGCCAAATAA 59.928 47.619 14.63 0.00 0.00 1.40
25 26 2.290641 TGTGAGACCGGTGCCAAATAAT 60.291 45.455 14.63 0.00 0.00 1.28
26 27 2.097466 GTGAGACCGGTGCCAAATAATG 59.903 50.000 14.63 0.00 0.00 1.90
27 28 2.290641 TGAGACCGGTGCCAAATAATGT 60.291 45.455 14.63 0.00 0.00 2.71
29 30 3.161866 AGACCGGTGCCAAATAATGTTT 58.838 40.909 14.63 0.00 0.00 2.83
30 31 3.576550 AGACCGGTGCCAAATAATGTTTT 59.423 39.130 14.63 0.00 0.00 2.43
31 32 3.920446 ACCGGTGCCAAATAATGTTTTC 58.080 40.909 6.12 0.00 0.00 2.29
32 33 3.322254 ACCGGTGCCAAATAATGTTTTCA 59.678 39.130 6.12 0.00 0.00 2.69
34 35 3.925913 CGGTGCCAAATAATGTTTTCAGG 59.074 43.478 0.00 0.00 0.00 3.86
35 36 4.252878 GGTGCCAAATAATGTTTTCAGGG 58.747 43.478 0.00 0.00 0.00 4.45
36 37 3.684305 GTGCCAAATAATGTTTTCAGGGC 59.316 43.478 0.00 0.00 39.29 5.19
37 38 3.326006 TGCCAAATAATGTTTTCAGGGCA 59.674 39.130 0.00 0.00 45.75 5.36
39 40 4.571984 GCCAAATAATGTTTTCAGGGCATC 59.428 41.667 0.00 0.00 38.71 3.91
40 41 4.805192 CCAAATAATGTTTTCAGGGCATCG 59.195 41.667 0.00 0.00 0.00 3.84
41 42 3.715628 ATAATGTTTTCAGGGCATCGC 57.284 42.857 0.00 0.00 0.00 4.58
43 44 0.813184 ATGTTTTCAGGGCATCGCTG 59.187 50.000 4.73 4.73 44.21 5.18
60 61 2.283145 CTGCCCAGCCAGCTATATTT 57.717 50.000 0.00 0.00 0.00 1.40
62 63 3.754965 CTGCCCAGCCAGCTATATTTTA 58.245 45.455 0.00 0.00 0.00 1.52
63 64 4.144297 CTGCCCAGCCAGCTATATTTTAA 58.856 43.478 0.00 0.00 0.00 1.52
65 66 4.523943 TGCCCAGCCAGCTATATTTTAATG 59.476 41.667 0.00 0.00 0.00 1.90
67 68 5.324409 CCCAGCCAGCTATATTTTAATGGA 58.676 41.667 0.00 0.00 0.00 3.41
68 69 5.183904 CCCAGCCAGCTATATTTTAATGGAC 59.816 44.000 0.00 0.00 0.00 4.02
69 70 6.006449 CCAGCCAGCTATATTTTAATGGACT 58.994 40.000 0.00 0.00 0.00 3.85
70 71 6.072286 CCAGCCAGCTATATTTTAATGGACTG 60.072 42.308 0.00 0.00 34.55 3.51
72 73 5.183904 GCCAGCTATATTTTAATGGACTGGG 59.816 44.000 0.00 0.00 41.93 4.45
73 74 6.542821 CCAGCTATATTTTAATGGACTGGGA 58.457 40.000 0.00 0.00 38.77 4.37
75 76 7.671398 CCAGCTATATTTTAATGGACTGGGAAT 59.329 37.037 0.00 0.00 38.77 3.01
76 77 8.734386 CAGCTATATTTTAATGGACTGGGAATC 58.266 37.037 0.00 0.00 0.00 2.52
77 78 7.607991 AGCTATATTTTAATGGACTGGGAATCG 59.392 37.037 0.00 0.00 0.00 3.34
78 79 7.606456 GCTATATTTTAATGGACTGGGAATCGA 59.394 37.037 0.00 0.00 0.00 3.59
79 80 7.745620 ATATTTTAATGGACTGGGAATCGAC 57.254 36.000 0.00 0.00 0.00 4.20
80 81 4.837093 TTTAATGGACTGGGAATCGACT 57.163 40.909 0.00 0.00 0.00 4.18
81 82 5.943349 TTTAATGGACTGGGAATCGACTA 57.057 39.130 0.00 0.00 0.00 2.59
84 85 2.747177 TGGACTGGGAATCGACTACAT 58.253 47.619 0.00 0.00 0.00 2.29
86 87 3.889538 TGGACTGGGAATCGACTACATAG 59.110 47.826 0.00 0.00 0.00 2.23
87 88 3.890147 GGACTGGGAATCGACTACATAGT 59.110 47.826 0.00 0.00 39.71 2.12
88 89 4.261656 GGACTGGGAATCGACTACATAGTG 60.262 50.000 0.00 0.00 36.50 2.74
89 90 3.637229 ACTGGGAATCGACTACATAGTGG 59.363 47.826 0.00 0.00 36.50 4.00
92 93 4.341235 TGGGAATCGACTACATAGTGGAAG 59.659 45.833 7.70 0.00 42.81 3.46
93 94 4.262079 GGGAATCGACTACATAGTGGAAGG 60.262 50.000 7.70 0.00 42.81 3.46
95 96 2.029623 TCGACTACATAGTGGAAGGCC 58.970 52.381 0.00 0.00 37.96 5.19
96 97 2.032620 CGACTACATAGTGGAAGGCCT 58.967 52.381 0.00 0.00 36.50 5.19
97 98 2.431057 CGACTACATAGTGGAAGGCCTT 59.569 50.000 20.65 20.65 36.50 4.35
98 99 3.635373 CGACTACATAGTGGAAGGCCTTA 59.365 47.826 20.54 1.80 36.50 2.69
99 100 4.261656 CGACTACATAGTGGAAGGCCTTAG 60.262 50.000 20.54 11.33 36.50 2.18
100 101 3.388350 ACTACATAGTGGAAGGCCTTAGC 59.612 47.826 20.54 11.56 34.72 3.09
113 114 1.819632 CTTAGCCTGCCCGCGATTT 60.820 57.895 8.23 0.00 0.00 2.17
114 115 1.776034 CTTAGCCTGCCCGCGATTTC 61.776 60.000 8.23 0.00 0.00 2.17
125 126 2.511600 CGATTTCGCCCGCCTCTT 60.512 61.111 0.00 0.00 0.00 2.85
126 127 2.813179 CGATTTCGCCCGCCTCTTG 61.813 63.158 0.00 0.00 0.00 3.02
127 128 1.745489 GATTTCGCCCGCCTCTTGT 60.745 57.895 0.00 0.00 0.00 3.16
128 129 1.303317 ATTTCGCCCGCCTCTTGTT 60.303 52.632 0.00 0.00 0.00 2.83
129 130 0.035820 ATTTCGCCCGCCTCTTGTTA 60.036 50.000 0.00 0.00 0.00 2.41
131 132 2.791501 TTCGCCCGCCTCTTGTTACC 62.792 60.000 0.00 0.00 0.00 2.85
132 133 2.669240 GCCCGCCTCTTGTTACCT 59.331 61.111 0.00 0.00 0.00 3.08
133 134 1.449778 GCCCGCCTCTTGTTACCTC 60.450 63.158 0.00 0.00 0.00 3.85
134 135 1.980052 CCCGCCTCTTGTTACCTCA 59.020 57.895 0.00 0.00 0.00 3.86
136 137 1.065418 CCCGCCTCTTGTTACCTCATT 60.065 52.381 0.00 0.00 0.00 2.57
138 139 2.354704 CCGCCTCTTGTTACCTCATTGA 60.355 50.000 0.00 0.00 0.00 2.57
139 140 3.535561 CGCCTCTTGTTACCTCATTGAT 58.464 45.455 0.00 0.00 0.00 2.57
140 141 3.941483 CGCCTCTTGTTACCTCATTGATT 59.059 43.478 0.00 0.00 0.00 2.57
141 142 4.201851 CGCCTCTTGTTACCTCATTGATTG 60.202 45.833 0.00 0.00 0.00 2.67
142 143 4.439289 GCCTCTTGTTACCTCATTGATTGC 60.439 45.833 0.00 0.00 0.00 3.56
143 144 4.701651 CCTCTTGTTACCTCATTGATTGCA 59.298 41.667 0.00 0.00 0.00 4.08
144 145 5.163683 CCTCTTGTTACCTCATTGATTGCAG 60.164 44.000 0.00 0.00 0.00 4.41
145 146 4.701651 TCTTGTTACCTCATTGATTGCAGG 59.298 41.667 0.00 0.00 0.00 4.85
147 148 4.009675 TGTTACCTCATTGATTGCAGGAC 58.990 43.478 0.00 0.00 0.00 3.85
148 149 1.742761 ACCTCATTGATTGCAGGACG 58.257 50.000 0.00 0.00 0.00 4.79
149 150 1.019673 CCTCATTGATTGCAGGACGG 58.980 55.000 0.00 0.00 0.00 4.79
151 152 1.667724 CTCATTGATTGCAGGACGGAC 59.332 52.381 0.00 0.00 0.00 4.79
152 153 0.374758 CATTGATTGCAGGACGGACG 59.625 55.000 0.00 0.00 0.00 4.79
196 197 4.473559 TGGATCTCGGGTATTTCTTTCCTT 59.526 41.667 0.00 0.00 0.00 3.36
242 243 5.071384 CCCCCTCTGGTTAACGAGTATTATT 59.929 44.000 16.08 0.00 0.00 1.40
273 274 9.578576 TTACTACTAAACTACTCCTTCTGTTCA 57.421 33.333 0.00 0.00 0.00 3.18
274 275 7.884257 ACTACTAAACTACTCCTTCTGTTCAC 58.116 38.462 0.00 0.00 0.00 3.18
275 276 6.980416 ACTAAACTACTCCTTCTGTTCACT 57.020 37.500 0.00 0.00 0.00 3.41
276 277 7.362802 ACTAAACTACTCCTTCTGTTCACTT 57.637 36.000 0.00 0.00 0.00 3.16
283 284 9.930693 ACTACTCCTTCTGTTCACTTTTATAAG 57.069 33.333 0.00 0.00 37.40 1.73
285 286 8.834749 ACTCCTTCTGTTCACTTTTATAAGTC 57.165 34.615 0.00 0.00 42.67 3.01
287 288 7.974504 TCCTTCTGTTCACTTTTATAAGTCCT 58.025 34.615 0.00 0.00 42.67 3.85
288 289 8.437575 TCCTTCTGTTCACTTTTATAAGTCCTT 58.562 33.333 0.00 0.00 42.67 3.36
305 306 9.793259 ATAAGTCCTTAAAGACATTTCAGACAA 57.207 29.630 6.97 0.00 39.34 3.18
306 307 8.697507 AAGTCCTTAAAGACATTTCAGACAAT 57.302 30.769 6.97 0.00 39.34 2.71
307 308 9.793259 AAGTCCTTAAAGACATTTCAGACAATA 57.207 29.630 6.97 0.00 39.34 1.90
308 309 9.965902 AGTCCTTAAAGACATTTCAGACAATAT 57.034 29.630 6.97 0.00 39.34 1.28
361 362 9.855021 AAAATGACTTATAAAAATGAACGGAGG 57.145 29.630 0.00 0.00 0.00 4.30
363 364 6.713276 TGACTTATAAAAATGAACGGAGGGA 58.287 36.000 0.00 0.00 0.00 4.20
367 368 7.985752 ACTTATAAAAATGAACGGAGGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
376 377 3.438183 ACGGAGGGAGTAGTACAAATGT 58.562 45.455 2.52 0.00 0.00 2.71
377 378 4.603131 ACGGAGGGAGTAGTACAAATGTA 58.397 43.478 2.52 0.00 0.00 2.29
424 425 3.953006 CAAAGCCTGCTTCCTCTCT 57.047 52.632 4.63 0.00 34.84 3.10
425 426 1.736612 CAAAGCCTGCTTCCTCTCTC 58.263 55.000 4.63 0.00 34.84 3.20
426 427 0.617935 AAAGCCTGCTTCCTCTCTCC 59.382 55.000 4.63 0.00 34.84 3.71
427 428 0.546267 AAGCCTGCTTCCTCTCTCCA 60.546 55.000 0.00 0.00 0.00 3.86
428 429 0.977108 AGCCTGCTTCCTCTCTCCAG 60.977 60.000 0.00 0.00 0.00 3.86
429 430 1.521616 CCTGCTTCCTCTCTCCAGC 59.478 63.158 0.00 0.00 0.00 4.85
430 431 1.521616 CTGCTTCCTCTCTCCAGCC 59.478 63.158 0.00 0.00 0.00 4.85
431 432 1.229304 TGCTTCCTCTCTCCAGCCA 60.229 57.895 0.00 0.00 0.00 4.75
432 433 1.220477 GCTTCCTCTCTCCAGCCAC 59.780 63.158 0.00 0.00 0.00 5.01
435 436 0.616111 TTCCTCTCTCCAGCCACCTC 60.616 60.000 0.00 0.00 0.00 3.85
449 553 1.032114 CACCTCTCCAAAATCCGGCC 61.032 60.000 0.00 0.00 0.00 6.13
451 555 1.302949 CTCTCCAAAATCCGGCCCA 59.697 57.895 0.00 0.00 0.00 5.36
452 556 0.323360 CTCTCCAAAATCCGGCCCAA 60.323 55.000 0.00 0.00 0.00 4.12
491 595 2.359531 CTCCTGTTAACCCTAGCGAGAG 59.640 54.545 2.48 0.00 0.00 3.20
529 633 0.326264 CCCAATCGATCCCCATCCTC 59.674 60.000 0.00 0.00 0.00 3.71
530 634 1.356124 CCAATCGATCCCCATCCTCT 58.644 55.000 0.00 0.00 0.00 3.69
531 635 1.002888 CCAATCGATCCCCATCCTCTG 59.997 57.143 0.00 0.00 0.00 3.35
624 737 1.217882 CGCGCCGGAAAATTAGATCT 58.782 50.000 5.05 0.00 0.00 2.75
625 738 1.597663 CGCGCCGGAAAATTAGATCTT 59.402 47.619 5.05 0.00 0.00 2.40
626 739 2.031683 CGCGCCGGAAAATTAGATCTTT 59.968 45.455 5.05 0.00 0.00 2.52
628 741 3.791353 GCGCCGGAAAATTAGATCTTTTG 59.209 43.478 5.05 0.00 0.00 2.44
629 742 3.791353 CGCCGGAAAATTAGATCTTTTGC 59.209 43.478 5.05 0.00 32.53 3.68
630 743 4.112634 GCCGGAAAATTAGATCTTTTGCC 58.887 43.478 5.05 3.52 32.29 4.52
631 744 4.682787 CCGGAAAATTAGATCTTTTGCCC 58.317 43.478 10.27 6.47 32.29 5.36
632 745 4.441495 CCGGAAAATTAGATCTTTTGCCCC 60.441 45.833 10.27 4.59 32.29 5.80
633 746 4.159506 CGGAAAATTAGATCTTTTGCCCCA 59.840 41.667 10.27 0.00 32.29 4.96
636 749 6.295859 GGAAAATTAGATCTTTTGCCCCACTT 60.296 38.462 0.00 0.00 30.43 3.16
637 750 6.686484 AAATTAGATCTTTTGCCCCACTTT 57.314 33.333 0.00 0.00 0.00 2.66
641 754 4.677182 AGATCTTTTGCCCCACTTTACAT 58.323 39.130 0.00 0.00 0.00 2.29
642 755 4.706962 AGATCTTTTGCCCCACTTTACATC 59.293 41.667 0.00 0.00 0.00 3.06
644 757 1.931635 TTTGCCCCACTTTACATCCC 58.068 50.000 0.00 0.00 0.00 3.85
645 758 0.040499 TTGCCCCACTTTACATCCCC 59.960 55.000 0.00 0.00 0.00 4.81
646 759 1.143329 TGCCCCACTTTACATCCCCA 61.143 55.000 0.00 0.00 0.00 4.96
647 760 0.261696 GCCCCACTTTACATCCCCAT 59.738 55.000 0.00 0.00 0.00 4.00
648 761 1.342975 GCCCCACTTTACATCCCCATT 60.343 52.381 0.00 0.00 0.00 3.16
649 762 2.091555 GCCCCACTTTACATCCCCATTA 60.092 50.000 0.00 0.00 0.00 1.90
651 764 3.461831 CCCCACTTTACATCCCCATTAGA 59.538 47.826 0.00 0.00 0.00 2.10
653 766 5.312178 CCCCACTTTACATCCCCATTAGATA 59.688 44.000 0.00 0.00 0.00 1.98
655 768 7.294584 CCCACTTTACATCCCCATTAGATAAA 58.705 38.462 0.00 0.00 0.00 1.40
656 769 7.950124 CCCACTTTACATCCCCATTAGATAAAT 59.050 37.037 0.00 0.00 0.00 1.40
657 770 9.014297 CCACTTTACATCCCCATTAGATAAATC 57.986 37.037 0.00 0.00 0.00 2.17
661 774 6.803587 ACATCCCCATTAGATAAATCCCTT 57.196 37.500 0.00 0.00 0.00 3.95
662 775 6.794534 ACATCCCCATTAGATAAATCCCTTC 58.205 40.000 0.00 0.00 0.00 3.46
663 776 5.860648 TCCCCATTAGATAAATCCCTTCC 57.139 43.478 0.00 0.00 0.00 3.46
664 777 4.606255 TCCCCATTAGATAAATCCCTTCCC 59.394 45.833 0.00 0.00 0.00 3.97
665 778 4.608028 CCCCATTAGATAAATCCCTTCCCT 59.392 45.833 0.00 0.00 0.00 4.20
666 779 5.795870 CCCCATTAGATAAATCCCTTCCCTA 59.204 44.000 0.00 0.00 0.00 3.53
668 781 6.418946 CCATTAGATAAATCCCTTCCCTAGC 58.581 44.000 0.00 0.00 0.00 3.42
669 782 6.216456 CCATTAGATAAATCCCTTCCCTAGCT 59.784 42.308 0.00 0.00 0.00 3.32
671 784 8.826765 CATTAGATAAATCCCTTCCCTAGCTTA 58.173 37.037 0.00 0.00 0.00 3.09
673 786 3.866703 AAATCCCTTCCCTAGCTTAGC 57.133 47.619 0.00 0.00 0.00 3.09
674 787 2.805290 ATCCCTTCCCTAGCTTAGCT 57.195 50.000 12.67 12.67 43.41 3.32
678 791 1.475930 CCTTCCCTAGCTTAGCTTGCC 60.476 57.143 13.44 0.00 40.44 4.52
680 793 1.123928 TCCCTAGCTTAGCTTGCCTC 58.876 55.000 13.44 0.00 40.44 4.70
683 796 1.269517 CCTAGCTTAGCTTGCCTCTCG 60.270 57.143 13.44 0.00 40.44 4.04
684 797 0.747255 TAGCTTAGCTTGCCTCTCGG 59.253 55.000 13.44 0.00 40.44 4.63
738 851 1.440893 CCTCCATGACTCGAGCTGG 59.559 63.158 13.61 16.69 0.00 4.85
740 853 2.584418 CCATGACTCGAGCTGGCG 60.584 66.667 13.61 0.00 0.00 5.69
741 854 2.491621 CATGACTCGAGCTGGCGA 59.508 61.111 13.61 0.00 38.74 5.54
789 902 2.348888 ACCACATCTCCGACCCGTC 61.349 63.158 0.00 0.00 0.00 4.79
964 1080 3.170490 ATCCGCTTCTGATCCCCGC 62.170 63.158 0.00 0.00 0.00 6.13
981 1097 1.686115 CCGCTTGGATGGGGATTTCTT 60.686 52.381 0.00 0.00 41.89 2.52
982 1098 2.102578 CGCTTGGATGGGGATTTCTTT 58.897 47.619 0.00 0.00 0.00 2.52
1014 1130 9.920826 GTTTATTGTCAGATGTATGTATGTGTG 57.079 33.333 0.00 0.00 0.00 3.82
1016 1132 6.966435 TTGTCAGATGTATGTATGTGTGTG 57.034 37.500 0.00 0.00 0.00 3.82
1071 1196 2.474526 CGTCGCTTGTTGAATCATCACC 60.475 50.000 0.00 0.00 34.61 4.02
1072 1197 2.744202 GTCGCTTGTTGAATCATCACCT 59.256 45.455 0.00 0.00 34.61 4.00
1074 1199 4.033358 GTCGCTTGTTGAATCATCACCTAG 59.967 45.833 0.00 0.00 34.61 3.02
1095 1220 7.125811 ACCTAGATGGGTGCGTATATGAATTAT 59.874 37.037 0.00 0.00 41.11 1.28
1098 1223 8.948631 AGATGGGTGCGTATATGAATTATTAG 57.051 34.615 0.00 0.00 0.00 1.73
1099 1224 8.540388 AGATGGGTGCGTATATGAATTATTAGT 58.460 33.333 0.00 0.00 0.00 2.24
1123 1248 5.532025 AGTGAGATTAAGCGTAAACAAGC 57.468 39.130 0.00 0.00 0.00 4.01
1146 1271 5.045286 GCCATGTGGGATTATCCTCTAGAAT 60.045 44.000 11.40 0.00 40.01 2.40
1160 1295 7.900782 TCCTCTAGAATTTTTCTTACGGTTG 57.099 36.000 0.00 0.00 41.14 3.77
1161 1296 7.447594 TCCTCTAGAATTTTTCTTACGGTTGT 58.552 34.615 0.00 0.00 41.14 3.32
1162 1297 8.587608 TCCTCTAGAATTTTTCTTACGGTTGTA 58.412 33.333 0.00 0.00 41.14 2.41
1163 1298 8.654215 CCTCTAGAATTTTTCTTACGGTTGTAC 58.346 37.037 0.00 0.00 41.14 2.90
1177 1312 2.593257 GTTGTACTGTACCGACTGCTC 58.407 52.381 14.91 0.00 0.00 4.26
1204 1339 3.464111 AAAGTTCATATACGGGGGTCG 57.536 47.619 0.00 0.00 45.88 4.79
1206 1341 2.236766 AGTTCATATACGGGGGTCGAG 58.763 52.381 0.00 0.00 42.43 4.04
1208 1343 2.824341 GTTCATATACGGGGGTCGAGAT 59.176 50.000 0.00 0.00 42.43 2.75
1209 1344 3.165087 TCATATACGGGGGTCGAGATT 57.835 47.619 0.00 0.00 42.43 2.40
1210 1345 4.305539 TCATATACGGGGGTCGAGATTA 57.694 45.455 0.00 0.00 42.43 1.75
1211 1346 4.267536 TCATATACGGGGGTCGAGATTAG 58.732 47.826 0.00 0.00 42.43 1.73
1213 1348 1.683943 TACGGGGGTCGAGATTAGTG 58.316 55.000 0.00 0.00 42.43 2.74
1214 1349 1.067582 CGGGGGTCGAGATTAGTGC 59.932 63.158 0.00 0.00 42.43 4.40
1215 1350 1.446366 GGGGGTCGAGATTAGTGCC 59.554 63.158 0.00 0.00 0.00 5.01
1216 1351 1.049289 GGGGGTCGAGATTAGTGCCT 61.049 60.000 0.00 0.00 0.00 4.75
1217 1352 0.389757 GGGGTCGAGATTAGTGCCTC 59.610 60.000 0.00 0.00 0.00 4.70
1218 1353 1.404843 GGGTCGAGATTAGTGCCTCT 58.595 55.000 0.00 0.00 0.00 3.69
1219 1354 1.067821 GGGTCGAGATTAGTGCCTCTG 59.932 57.143 0.00 0.00 0.00 3.35
1220 1355 1.537135 GGTCGAGATTAGTGCCTCTGC 60.537 57.143 0.00 0.00 38.26 4.26
1221 1356 0.747255 TCGAGATTAGTGCCTCTGCC 59.253 55.000 0.00 0.00 36.33 4.85
1309 1454 6.148948 GCAGAGAGCACTACAGATTACTATG 58.851 44.000 0.00 0.00 44.79 2.23
1310 1455 6.238897 GCAGAGAGCACTACAGATTACTATGT 60.239 42.308 0.00 0.00 44.79 2.29
1312 1457 9.008965 CAGAGAGCACTACAGATTACTATGTAT 57.991 37.037 0.00 0.00 31.79 2.29
1360 1505 6.044512 CGCAAGTGTTACTTAATATCCCAC 57.955 41.667 0.00 0.00 36.03 4.61
1394 1539 2.203538 CAGCCCAGGTTGCCAACT 60.204 61.111 7.62 0.00 0.00 3.16
1399 1544 2.198426 CAGGTTGCCAACTGGGGT 59.802 61.111 7.62 0.00 37.04 4.95
1400 1545 1.903404 CAGGTTGCCAACTGGGGTC 60.903 63.158 7.62 0.00 37.04 4.46
1401 1546 2.983592 GGTTGCCAACTGGGGTCG 60.984 66.667 7.62 0.00 37.04 4.79
1402 1547 2.203294 GTTGCCAACTGGGGTCGT 60.203 61.111 0.00 0.00 37.04 4.34
1403 1548 2.112297 TTGCCAACTGGGGTCGTC 59.888 61.111 0.00 0.00 37.04 4.20
1404 1549 3.818121 TTGCCAACTGGGGTCGTCG 62.818 63.158 0.00 0.00 37.04 5.12
1406 1551 4.003788 CCAACTGGGGTCGTCGCT 62.004 66.667 0.00 0.00 0.00 4.93
1407 1552 2.432628 CAACTGGGGTCGTCGCTC 60.433 66.667 0.00 0.00 0.00 5.03
1408 1553 4.052229 AACTGGGGTCGTCGCTCG 62.052 66.667 0.00 0.00 41.41 5.03
1415 1560 4.395583 GTCGTCGCTCGGTCGGTT 62.396 66.667 0.00 0.00 40.32 4.44
1416 1561 4.394078 TCGTCGCTCGGTCGGTTG 62.394 66.667 0.00 0.00 40.32 3.77
1418 1563 4.353437 GTCGCTCGGTCGGTTGGT 62.353 66.667 0.00 0.00 0.00 3.67
1419 1564 4.047059 TCGCTCGGTCGGTTGGTC 62.047 66.667 0.00 0.00 0.00 4.02
1422 1567 3.677648 CTCGGTCGGTTGGTCGGT 61.678 66.667 0.00 0.00 0.00 4.69
1423 1568 3.216944 CTCGGTCGGTTGGTCGGTT 62.217 63.158 0.00 0.00 0.00 4.44
1424 1569 3.039588 CGGTCGGTTGGTCGGTTG 61.040 66.667 0.00 0.00 0.00 3.77
1425 1570 3.351416 GGTCGGTTGGTCGGTTGC 61.351 66.667 0.00 0.00 0.00 4.17
1426 1571 2.280592 GTCGGTTGGTCGGTTGCT 60.281 61.111 0.00 0.00 0.00 3.91
1427 1572 2.280524 TCGGTTGGTCGGTTGCTG 60.281 61.111 0.00 0.00 0.00 4.41
1428 1573 2.590575 CGGTTGGTCGGTTGCTGT 60.591 61.111 0.00 0.00 0.00 4.40
1429 1574 2.604174 CGGTTGGTCGGTTGCTGTC 61.604 63.158 0.00 0.00 0.00 3.51
1430 1575 1.525077 GGTTGGTCGGTTGCTGTCA 60.525 57.895 0.00 0.00 0.00 3.58
1431 1576 1.098712 GGTTGGTCGGTTGCTGTCAA 61.099 55.000 0.00 0.00 0.00 3.18
1446 1591 6.849588 TGCTGTCAACATGTATATGTGATC 57.150 37.500 5.81 0.97 46.54 2.92
1447 1592 5.759763 TGCTGTCAACATGTATATGTGATCC 59.240 40.000 5.81 0.00 46.54 3.36
1448 1593 5.994054 GCTGTCAACATGTATATGTGATCCT 59.006 40.000 5.81 0.00 46.54 3.24
1478 1623 3.503363 TGTGAAAGCATCTTGGTTAGCAG 59.497 43.478 0.00 0.00 37.04 4.24
1520 1665 6.374333 ACACTTACTTGACCGCATAATGAATT 59.626 34.615 0.00 0.00 0.00 2.17
1521 1666 6.907212 CACTTACTTGACCGCATAATGAATTC 59.093 38.462 0.00 0.00 0.00 2.17
1523 1668 5.235305 ACTTGACCGCATAATGAATTCAC 57.765 39.130 11.07 0.00 0.00 3.18
1524 1669 4.096382 ACTTGACCGCATAATGAATTCACC 59.904 41.667 11.07 0.00 0.00 4.02
1525 1670 3.884895 TGACCGCATAATGAATTCACCT 58.115 40.909 11.07 3.64 0.00 4.00
1526 1671 3.627123 TGACCGCATAATGAATTCACCTG 59.373 43.478 11.07 9.53 0.00 4.00
1527 1672 3.620488 ACCGCATAATGAATTCACCTGT 58.380 40.909 11.07 0.00 0.00 4.00
1528 1673 4.776349 ACCGCATAATGAATTCACCTGTA 58.224 39.130 11.07 1.57 0.00 2.74
1529 1674 5.189928 ACCGCATAATGAATTCACCTGTAA 58.810 37.500 11.07 0.00 0.00 2.41
1530 1675 5.296780 ACCGCATAATGAATTCACCTGTAAG 59.703 40.000 11.07 0.93 0.00 2.34
1551 1704 4.385825 AGCTCCGTTTCATGTACAAGAAA 58.614 39.130 19.43 19.43 0.00 2.52
1552 1705 4.452455 AGCTCCGTTTCATGTACAAGAAAG 59.548 41.667 22.77 16.72 34.69 2.62
1553 1706 4.451096 GCTCCGTTTCATGTACAAGAAAGA 59.549 41.667 22.77 16.93 34.69 2.52
1554 1707 5.122396 GCTCCGTTTCATGTACAAGAAAGAT 59.878 40.000 22.77 0.00 34.69 2.40
1555 1708 6.480524 TCCGTTTCATGTACAAGAAAGATG 57.519 37.500 22.77 16.07 34.69 2.90
1556 1709 5.995282 TCCGTTTCATGTACAAGAAAGATGT 59.005 36.000 22.77 0.00 34.69 3.06
1557 1710 6.485313 TCCGTTTCATGTACAAGAAAGATGTT 59.515 34.615 22.77 0.00 34.69 2.71
1558 1711 7.012894 TCCGTTTCATGTACAAGAAAGATGTTT 59.987 33.333 22.77 0.00 34.69 2.83
1559 1712 7.113404 CCGTTTCATGTACAAGAAAGATGTTTG 59.887 37.037 22.77 9.50 34.69 2.93
1560 1713 7.855409 CGTTTCATGTACAAGAAAGATGTTTGA 59.145 33.333 22.77 5.08 34.69 2.69
1561 1714 9.515020 GTTTCATGTACAAGAAAGATGTTTGAA 57.485 29.630 22.77 10.44 34.69 2.69
1585 1738 0.320073 TTCTCACTACCGCCAAACCG 60.320 55.000 0.00 0.00 0.00 4.44
1779 1944 2.972625 TCTTCACACCTATTTCAGCCG 58.027 47.619 0.00 0.00 0.00 5.52
1804 1972 0.517755 TCGCTGACACGTCTTCTCTC 59.482 55.000 0.00 0.00 0.00 3.20
1905 2074 1.368641 TTGACATATGTGCTCCGTGC 58.631 50.000 14.43 0.00 43.25 5.34
2669 2866 6.988725 TCCCTCCGTCCCATAATATAAGATA 58.011 40.000 0.00 0.00 0.00 1.98
2815 3012 7.999878 CAGATTTTGTTGTTTTTCATCATCACG 59.000 33.333 0.00 0.00 0.00 4.35
2935 3132 6.474819 TTTGTAACATATTGTGGAGTGTCG 57.525 37.500 0.00 0.00 0.00 4.35
2941 3138 2.732412 ATTGTGGAGTGTCGACTCTG 57.268 50.000 23.76 0.00 46.96 3.35
2950 3147 4.396790 GGAGTGTCGACTCTGTTCTTAGAT 59.603 45.833 23.76 0.00 46.96 1.98
3205 3402 5.457140 TCGTTGCTTATAAGTTTTTGCTGG 58.543 37.500 13.91 0.00 0.00 4.85
3294 3492 1.569493 CAAACACCTGACCTTCGCG 59.431 57.895 0.00 0.00 0.00 5.87
3506 3704 4.051922 GGTTATTGAGTGTCAGGCTATCG 58.948 47.826 0.00 0.00 0.00 2.92
3829 4029 6.540189 AGTGATGCAAACAGAAGTATATCACC 59.460 38.462 0.00 0.00 42.33 4.02
3913 4227 5.201243 GTTACCCCCTTGCATAAGATTTCT 58.799 41.667 0.00 0.00 35.92 2.52
4126 4447 2.484594 GGAGCTCTGTAGAAATGGAGGC 60.485 54.545 14.64 0.00 0.00 4.70
4566 4902 2.679837 GCTGAAGATCGCATTTGGAAGA 59.320 45.455 0.00 0.00 0.00 2.87
5484 5832 5.883673 GTGCAACTATTAAGGTGGGTAATGA 59.116 40.000 0.00 0.00 41.08 2.57
5502 5850 6.657541 GGTAATGACATTTTGACTGGTCCTTA 59.342 38.462 5.89 0.00 0.00 2.69
6063 6558 1.414919 TGAAGGTAGACTTGCAACCGT 59.585 47.619 0.00 0.00 40.21 4.83
6368 6892 2.202440 GCGAGAACGACTAGCGCA 60.202 61.111 11.47 0.00 46.19 6.09
6381 6905 3.612681 GCGCAGGCTATCCGGGTA 61.613 66.667 0.30 0.00 37.47 3.69
6675 7204 4.782019 TTTTTCTTGCCGCAAGTGATAT 57.218 36.364 28.03 0.00 41.66 1.63
6676 7205 5.888691 TTTTTCTTGCCGCAAGTGATATA 57.111 34.783 28.03 9.12 41.66 0.86
6677 7206 6.449635 TTTTTCTTGCCGCAAGTGATATAT 57.550 33.333 28.03 0.00 41.66 0.86
6678 7207 7.561021 TTTTTCTTGCCGCAAGTGATATATA 57.439 32.000 28.03 7.75 41.66 0.86
6679 7208 7.744087 TTTTCTTGCCGCAAGTGATATATAT 57.256 32.000 28.03 0.00 41.66 0.86
6680 7209 6.726258 TTCTTGCCGCAAGTGATATATATG 57.274 37.500 28.03 3.94 41.66 1.78
6681 7210 4.631377 TCTTGCCGCAAGTGATATATATGC 59.369 41.667 28.03 0.00 41.66 3.14
6682 7211 3.270027 TGCCGCAAGTGATATATATGCC 58.730 45.455 0.00 0.00 33.55 4.40
6683 7212 3.055167 TGCCGCAAGTGATATATATGCCT 60.055 43.478 0.00 0.00 33.55 4.75
6684 7213 3.941483 GCCGCAAGTGATATATATGCCTT 59.059 43.478 0.00 0.00 33.55 4.35
6685 7214 4.396166 GCCGCAAGTGATATATATGCCTTT 59.604 41.667 0.00 0.00 33.55 3.11
6686 7215 5.106157 GCCGCAAGTGATATATATGCCTTTT 60.106 40.000 0.00 0.00 33.55 2.27
6687 7216 6.546395 CCGCAAGTGATATATATGCCTTTTC 58.454 40.000 0.00 0.00 33.55 2.29
6688 7217 6.149308 CCGCAAGTGATATATATGCCTTTTCA 59.851 38.462 0.00 0.00 33.55 2.69
6689 7218 7.239271 CGCAAGTGATATATATGCCTTTTCAG 58.761 38.462 0.00 0.00 33.55 3.02
6690 7219 7.095060 CGCAAGTGATATATATGCCTTTTCAGT 60.095 37.037 0.00 0.00 33.55 3.41
6691 7220 8.571336 GCAAGTGATATATATGCCTTTTCAGTT 58.429 33.333 0.00 0.00 0.00 3.16
6692 7221 9.888878 CAAGTGATATATATGCCTTTTCAGTTG 57.111 33.333 0.00 6.68 36.97 3.16
6693 7222 8.627208 AGTGATATATATGCCTTTTCAGTTGG 57.373 34.615 0.00 0.00 0.00 3.77
6694 7223 7.667219 AGTGATATATATGCCTTTTCAGTTGGG 59.333 37.037 0.00 0.00 0.00 4.12
6695 7224 7.448469 GTGATATATATGCCTTTTCAGTTGGGT 59.552 37.037 0.00 0.00 0.00 4.51
6696 7225 8.664992 TGATATATATGCCTTTTCAGTTGGGTA 58.335 33.333 0.00 0.00 0.00 3.69
6697 7226 9.515226 GATATATATGCCTTTTCAGTTGGGTAA 57.485 33.333 0.00 0.00 0.00 2.85
6698 7227 9.875708 ATATATATGCCTTTTCAGTTGGGTAAA 57.124 29.630 0.00 0.00 0.00 2.01
6699 7228 8.782137 ATATATGCCTTTTCAGTTGGGTAAAT 57.218 30.769 0.00 0.00 0.00 1.40
6700 7229 4.599047 TGCCTTTTCAGTTGGGTAAATG 57.401 40.909 0.00 0.00 33.40 2.32
6701 7230 3.964031 TGCCTTTTCAGTTGGGTAAATGT 59.036 39.130 0.00 0.00 33.80 2.71
6702 7231 4.407296 TGCCTTTTCAGTTGGGTAAATGTT 59.593 37.500 0.00 0.00 33.80 2.71
6703 7232 5.104735 TGCCTTTTCAGTTGGGTAAATGTTT 60.105 36.000 0.00 0.00 33.80 2.83
6704 7233 5.820423 GCCTTTTCAGTTGGGTAAATGTTTT 59.180 36.000 0.00 0.00 33.80 2.43
6705 7234 6.317642 GCCTTTTCAGTTGGGTAAATGTTTTT 59.682 34.615 0.00 0.00 33.80 1.94
7159 7697 4.273257 GCCGGCGAGGAGAGCTAC 62.273 72.222 12.58 0.00 45.00 3.58
7160 7698 2.517402 CCGGCGAGGAGAGCTACT 60.517 66.667 9.30 0.00 45.00 2.57
7173 7711 0.035056 AGCTACTTGCCGCCTTCAAT 60.035 50.000 0.00 0.00 44.23 2.57
7553 8091 0.325933 CTGGGATGTTGTCAGGCTCA 59.674 55.000 0.00 0.00 0.00 4.26
7578 8120 2.344872 GGCGACGTAGGGTGGTTT 59.655 61.111 0.00 0.00 0.00 3.27
7617 8159 3.513912 TCGGGAATGTAGAAAGAAGCTGA 59.486 43.478 0.00 0.00 0.00 4.26
7642 8184 4.431131 CCCGTCTGGCTGGGCATT 62.431 66.667 0.00 0.00 38.90 3.56
7745 8297 5.433526 TGTAACTAGTGTTTGGTGAAAGCT 58.566 37.500 0.00 0.00 37.59 3.74
7788 8356 7.010923 GTCAAAGACTCTATCCTTATGTTGCAG 59.989 40.741 0.00 0.00 0.00 4.41
7972 8545 0.183492 TGAGGAAGCAGGTGCAGTTT 59.817 50.000 4.48 0.00 45.16 2.66
8032 8605 2.031157 GTGTCTTGGTTCCGGTGAAATG 60.031 50.000 0.00 0.00 30.79 2.32
8038 8611 1.135402 GGTTCCGGTGAAATGCATGTC 60.135 52.381 10.16 10.16 30.79 3.06
8061 8636 6.423302 GTCCAAGATGCTGTTCATGTATCTAG 59.577 42.308 0.00 0.00 36.20 2.43
8072 8673 3.648067 TCATGTATCTAGCAAGAAGGGGG 59.352 47.826 0.00 0.00 34.73 5.40
8097 8698 6.584563 GCTGTCAGTTTCTTTTTGTTGTTGTA 59.415 34.615 0.93 0.00 0.00 2.41
8131 8732 6.264067 GCTCAGTCCCATTTAAATTAGAGCAT 59.736 38.462 18.48 2.14 42.98 3.79
8150 8751 3.805823 CATGTTTACGTACAAGTGTGCC 58.194 45.455 0.00 0.00 0.00 5.01
8216 8817 5.982890 AATCTTGATTCACCGGAAACATT 57.017 34.783 9.46 0.00 35.97 2.71
8220 8821 2.824936 TGATTCACCGGAAACATTGCAT 59.175 40.909 9.46 0.00 36.43 3.96
8240 8841 7.155655 TGCATAGCATCAATTTAAACACAGA 57.844 32.000 0.00 0.00 31.71 3.41
8266 8867 1.876156 CTTTGGAGCGATAGATTGGCC 59.124 52.381 0.00 0.00 39.76 5.36
8294 8895 6.640518 ACACAATACCGATAATCAACACTCT 58.359 36.000 0.00 0.00 0.00 3.24
8295 8896 7.103641 ACACAATACCGATAATCAACACTCTT 58.896 34.615 0.00 0.00 0.00 2.85
8368 8969 2.879907 CATCCTTGCTGGGCGTTG 59.120 61.111 0.00 0.00 36.20 4.10
8383 8984 2.350484 GGCGTTGAGTAGTTGAAAAGCC 60.350 50.000 0.00 0.00 39.39 4.35
8445 9048 3.184986 GCAACATGTCAAATCAAACTGCC 59.815 43.478 0.00 0.00 0.00 4.85
8551 9154 8.415950 TTCAAATTAAACCTAATGAAGAGGCA 57.584 30.769 0.00 0.00 37.63 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.302511 GGCACCGGTCTCACAATGT 60.303 57.895 2.59 0.00 0.00 2.71
1 2 0.888736 TTGGCACCGGTCTCACAATG 60.889 55.000 2.59 0.00 0.00 2.82
2 3 0.179004 TTTGGCACCGGTCTCACAAT 60.179 50.000 2.59 0.00 0.00 2.71
3 4 0.179004 ATTTGGCACCGGTCTCACAA 60.179 50.000 2.59 4.78 0.00 3.33
5 6 1.816074 TTATTTGGCACCGGTCTCAC 58.184 50.000 2.59 0.00 0.00 3.51
6 7 2.290641 ACATTATTTGGCACCGGTCTCA 60.291 45.455 2.59 2.54 0.00 3.27
7 8 2.365582 ACATTATTTGGCACCGGTCTC 58.634 47.619 2.59 0.00 0.00 3.36
8 9 2.507407 ACATTATTTGGCACCGGTCT 57.493 45.000 2.59 0.00 0.00 3.85
9 10 3.586100 AAACATTATTTGGCACCGGTC 57.414 42.857 2.59 0.00 0.00 4.79
10 11 3.322254 TGAAAACATTATTTGGCACCGGT 59.678 39.130 0.00 0.00 0.00 5.28
11 12 3.919216 TGAAAACATTATTTGGCACCGG 58.081 40.909 0.00 0.00 0.00 5.28
12 13 3.925913 CCTGAAAACATTATTTGGCACCG 59.074 43.478 0.00 0.00 0.00 4.94
13 14 4.252878 CCCTGAAAACATTATTTGGCACC 58.747 43.478 0.00 0.00 0.00 5.01
14 15 3.684305 GCCCTGAAAACATTATTTGGCAC 59.316 43.478 0.00 0.00 32.20 5.01
15 16 3.326006 TGCCCTGAAAACATTATTTGGCA 59.674 39.130 0.00 0.00 36.86 4.92
16 17 3.936564 TGCCCTGAAAACATTATTTGGC 58.063 40.909 0.00 0.00 32.41 4.52
20 21 3.701040 AGCGATGCCCTGAAAACATTATT 59.299 39.130 0.00 0.00 0.00 1.40
22 23 2.423185 CAGCGATGCCCTGAAAACATTA 59.577 45.455 0.00 0.00 32.03 1.90
24 25 0.813184 CAGCGATGCCCTGAAAACAT 59.187 50.000 0.00 0.00 32.03 2.71
25 26 1.865788 GCAGCGATGCCCTGAAAACA 61.866 55.000 16.30 0.00 32.03 2.83
26 27 1.153958 GCAGCGATGCCCTGAAAAC 60.154 57.895 16.30 0.00 32.03 2.43
27 28 3.277133 GCAGCGATGCCCTGAAAA 58.723 55.556 16.30 0.00 32.03 2.29
41 42 2.283145 AAATATAGCTGGCTGGGCAG 57.717 50.000 17.96 17.96 0.00 4.85
43 44 4.082026 CCATTAAAATATAGCTGGCTGGGC 60.082 45.833 5.25 0.00 0.00 5.36
44 45 5.183904 GTCCATTAAAATATAGCTGGCTGGG 59.816 44.000 5.25 0.00 0.00 4.45
45 46 6.006449 AGTCCATTAAAATATAGCTGGCTGG 58.994 40.000 5.25 0.00 0.00 4.85
48 49 5.183904 CCCAGTCCATTAAAATATAGCTGGC 59.816 44.000 0.00 0.00 39.50 4.85
49 50 6.542821 TCCCAGTCCATTAAAATATAGCTGG 58.457 40.000 0.00 0.00 40.25 4.85
52 53 7.606456 TCGATTCCCAGTCCATTAAAATATAGC 59.394 37.037 0.00 0.00 0.00 2.97
53 54 8.936864 GTCGATTCCCAGTCCATTAAAATATAG 58.063 37.037 0.00 0.00 0.00 1.31
54 55 8.656806 AGTCGATTCCCAGTCCATTAAAATATA 58.343 33.333 0.00 0.00 0.00 0.86
56 57 6.895782 AGTCGATTCCCAGTCCATTAAAATA 58.104 36.000 0.00 0.00 0.00 1.40
58 59 5.174037 AGTCGATTCCCAGTCCATTAAAA 57.826 39.130 0.00 0.00 0.00 1.52
59 60 4.837093 AGTCGATTCCCAGTCCATTAAA 57.163 40.909 0.00 0.00 0.00 1.52
60 61 4.712829 TGTAGTCGATTCCCAGTCCATTAA 59.287 41.667 0.00 0.00 0.00 1.40
62 63 3.104512 TGTAGTCGATTCCCAGTCCATT 58.895 45.455 0.00 0.00 0.00 3.16
63 64 2.747177 TGTAGTCGATTCCCAGTCCAT 58.253 47.619 0.00 0.00 0.00 3.41
65 66 3.890147 ACTATGTAGTCGATTCCCAGTCC 59.110 47.826 0.00 0.00 0.00 3.85
67 68 3.637229 CCACTATGTAGTCGATTCCCAGT 59.363 47.826 0.00 0.00 33.46 4.00
68 69 3.889538 TCCACTATGTAGTCGATTCCCAG 59.110 47.826 0.00 0.00 33.46 4.45
69 70 3.905968 TCCACTATGTAGTCGATTCCCA 58.094 45.455 0.00 0.00 33.46 4.37
70 71 4.262079 CCTTCCACTATGTAGTCGATTCCC 60.262 50.000 0.00 0.00 33.46 3.97
72 73 4.299978 GCCTTCCACTATGTAGTCGATTC 58.700 47.826 0.00 0.00 33.46 2.52
73 74 3.069729 GGCCTTCCACTATGTAGTCGATT 59.930 47.826 0.00 0.00 33.46 3.34
75 76 2.029623 GGCCTTCCACTATGTAGTCGA 58.970 52.381 0.00 0.00 33.46 4.20
76 77 2.032620 AGGCCTTCCACTATGTAGTCG 58.967 52.381 0.00 0.00 33.46 4.18
77 78 4.501743 GCTAAGGCCTTCCACTATGTAGTC 60.502 50.000 24.49 3.30 33.46 2.59
78 79 3.388350 GCTAAGGCCTTCCACTATGTAGT 59.612 47.826 24.49 0.00 36.90 2.73
79 80 3.996480 GCTAAGGCCTTCCACTATGTAG 58.004 50.000 24.49 11.62 33.74 2.74
95 96 1.776034 GAAATCGCGGGCAGGCTAAG 61.776 60.000 6.13 0.00 0.00 2.18
96 97 1.817941 GAAATCGCGGGCAGGCTAA 60.818 57.895 6.13 0.00 0.00 3.09
97 98 2.203015 GAAATCGCGGGCAGGCTA 60.203 61.111 6.13 0.00 0.00 3.93
108 109 2.511600 AAGAGGCGGGCGAAATCG 60.512 61.111 0.00 0.00 43.27 3.34
110 111 0.035820 TAACAAGAGGCGGGCGAAAT 60.036 50.000 0.00 0.00 0.00 2.17
113 114 2.263540 GTAACAAGAGGCGGGCGA 59.736 61.111 0.00 0.00 0.00 5.54
114 115 2.818274 GGTAACAAGAGGCGGGCG 60.818 66.667 0.00 0.00 0.00 6.13
115 116 1.449778 GAGGTAACAAGAGGCGGGC 60.450 63.158 0.00 0.00 41.41 6.13
116 117 0.541863 ATGAGGTAACAAGAGGCGGG 59.458 55.000 0.00 0.00 41.41 6.13
117 118 2.009774 CAATGAGGTAACAAGAGGCGG 58.990 52.381 0.00 0.00 41.41 6.13
118 119 2.972625 TCAATGAGGTAACAAGAGGCG 58.027 47.619 0.00 0.00 41.41 5.52
119 120 4.439289 GCAATCAATGAGGTAACAAGAGGC 60.439 45.833 0.00 0.00 41.41 4.70
120 121 4.701651 TGCAATCAATGAGGTAACAAGAGG 59.298 41.667 0.00 0.00 41.41 3.69
122 123 4.701651 CCTGCAATCAATGAGGTAACAAGA 59.298 41.667 0.00 0.00 41.41 3.02
123 124 4.701651 TCCTGCAATCAATGAGGTAACAAG 59.298 41.667 0.00 0.00 41.41 3.16
124 125 4.458989 GTCCTGCAATCAATGAGGTAACAA 59.541 41.667 0.00 0.00 41.41 2.83
125 126 4.009675 GTCCTGCAATCAATGAGGTAACA 58.990 43.478 0.00 0.00 41.41 2.41
126 127 3.063997 CGTCCTGCAATCAATGAGGTAAC 59.936 47.826 0.00 0.00 31.83 2.50
127 128 3.270027 CGTCCTGCAATCAATGAGGTAA 58.730 45.455 0.00 0.00 31.83 2.85
128 129 2.419990 CCGTCCTGCAATCAATGAGGTA 60.420 50.000 0.00 0.00 31.83 3.08
129 130 1.679944 CCGTCCTGCAATCAATGAGGT 60.680 52.381 0.00 0.00 31.83 3.85
131 132 1.667724 GTCCGTCCTGCAATCAATGAG 59.332 52.381 0.00 0.00 0.00 2.90
132 133 1.737838 GTCCGTCCTGCAATCAATGA 58.262 50.000 0.00 0.00 0.00 2.57
133 134 0.374758 CGTCCGTCCTGCAATCAATG 59.625 55.000 0.00 0.00 0.00 2.82
134 135 0.249120 TCGTCCGTCCTGCAATCAAT 59.751 50.000 0.00 0.00 0.00 2.57
136 137 1.215382 CTCGTCCGTCCTGCAATCA 59.785 57.895 0.00 0.00 0.00 2.57
138 139 2.125512 GCTCGTCCGTCCTGCAAT 60.126 61.111 0.00 0.00 0.00 3.56
139 140 4.373116 GGCTCGTCCGTCCTGCAA 62.373 66.667 0.00 0.00 0.00 4.08
141 142 4.803426 CTGGCTCGTCCGTCCTGC 62.803 72.222 0.00 0.00 37.80 4.85
142 143 4.803426 GCTGGCTCGTCCGTCCTG 62.803 72.222 0.00 0.00 37.80 3.86
145 146 3.701604 AATCGCTGGCTCGTCCGTC 62.702 63.158 0.33 0.00 37.80 4.79
147 148 3.257561 CAATCGCTGGCTCGTCCG 61.258 66.667 0.33 0.00 37.80 4.79
148 149 2.650813 ATCCAATCGCTGGCTCGTCC 62.651 60.000 0.00 0.00 45.98 4.79
149 150 0.811616 AATCCAATCGCTGGCTCGTC 60.812 55.000 0.00 0.00 45.98 4.20
151 152 1.645455 CAATCCAATCGCTGGCTCG 59.355 57.895 0.00 0.00 45.98 5.03
152 153 0.464373 TCCAATCCAATCGCTGGCTC 60.464 55.000 0.00 0.00 45.98 4.70
196 197 3.313012 ACAAAGAATCATCGACCGACA 57.687 42.857 0.00 0.00 0.00 4.35
250 251 8.113173 AGTGAACAGAAGGAGTAGTTTAGTAG 57.887 38.462 0.00 0.00 0.00 2.57
253 254 8.664211 AAAAGTGAACAGAAGGAGTAGTTTAG 57.336 34.615 0.00 0.00 0.00 1.85
257 258 9.930693 CTTATAAAAGTGAACAGAAGGAGTAGT 57.069 33.333 0.00 0.00 0.00 2.73
258 259 9.930693 ACTTATAAAAGTGAACAGAAGGAGTAG 57.069 33.333 0.00 0.00 44.40 2.57
259 260 9.924650 GACTTATAAAAGTGAACAGAAGGAGTA 57.075 33.333 0.00 0.00 46.09 2.59
260 261 7.878644 GGACTTATAAAAGTGAACAGAAGGAGT 59.121 37.037 0.00 0.00 46.09 3.85
261 262 8.097662 AGGACTTATAAAAGTGAACAGAAGGAG 58.902 37.037 0.00 0.00 46.09 3.69
263 264 8.622948 AAGGACTTATAAAAGTGAACAGAAGG 57.377 34.615 0.00 0.00 46.09 3.46
281 282 8.697507 ATTGTCTGAAATGTCTTTAAGGACTT 57.302 30.769 17.50 9.43 37.16 3.01
282 283 9.965902 ATATTGTCTGAAATGTCTTTAAGGACT 57.034 29.630 17.50 0.00 37.16 3.85
336 337 8.466798 CCCTCCGTTCATTTTTATAAGTCATTT 58.533 33.333 0.00 0.00 0.00 2.32
337 338 7.832187 TCCCTCCGTTCATTTTTATAAGTCATT 59.168 33.333 0.00 0.00 0.00 2.57
338 339 7.343357 TCCCTCCGTTCATTTTTATAAGTCAT 58.657 34.615 0.00 0.00 0.00 3.06
339 340 6.713276 TCCCTCCGTTCATTTTTATAAGTCA 58.287 36.000 0.00 0.00 0.00 3.41
340 341 6.822170 ACTCCCTCCGTTCATTTTTATAAGTC 59.178 38.462 0.00 0.00 0.00 3.01
341 342 6.718294 ACTCCCTCCGTTCATTTTTATAAGT 58.282 36.000 0.00 0.00 0.00 2.24
342 343 7.985752 ACTACTCCCTCCGTTCATTTTTATAAG 59.014 37.037 0.00 0.00 0.00 1.73
343 344 7.854337 ACTACTCCCTCCGTTCATTTTTATAA 58.146 34.615 0.00 0.00 0.00 0.98
344 345 7.427989 ACTACTCCCTCCGTTCATTTTTATA 57.572 36.000 0.00 0.00 0.00 0.98
345 346 6.309389 ACTACTCCCTCCGTTCATTTTTAT 57.691 37.500 0.00 0.00 0.00 1.40
346 347 5.750352 ACTACTCCCTCCGTTCATTTTTA 57.250 39.130 0.00 0.00 0.00 1.52
347 348 4.635699 ACTACTCCCTCCGTTCATTTTT 57.364 40.909 0.00 0.00 0.00 1.94
348 349 4.529377 TGTACTACTCCCTCCGTTCATTTT 59.471 41.667 0.00 0.00 0.00 1.82
349 350 4.091549 TGTACTACTCCCTCCGTTCATTT 58.908 43.478 0.00 0.00 0.00 2.32
350 351 3.705051 TGTACTACTCCCTCCGTTCATT 58.295 45.455 0.00 0.00 0.00 2.57
351 352 3.377253 TGTACTACTCCCTCCGTTCAT 57.623 47.619 0.00 0.00 0.00 2.57
352 353 2.885135 TGTACTACTCCCTCCGTTCA 57.115 50.000 0.00 0.00 0.00 3.18
353 354 4.081807 ACATTTGTACTACTCCCTCCGTTC 60.082 45.833 0.00 0.00 0.00 3.95
354 355 3.836562 ACATTTGTACTACTCCCTCCGTT 59.163 43.478 0.00 0.00 0.00 4.44
356 357 4.497006 CGTACATTTGTACTACTCCCTCCG 60.497 50.000 16.46 0.00 46.43 4.63
359 360 4.381292 GCACGTACATTTGTACTACTCCCT 60.381 45.833 16.46 0.00 46.43 4.20
361 362 4.487948 TGCACGTACATTTGTACTACTCC 58.512 43.478 16.46 4.10 46.43 3.85
363 364 5.163893 GCAATGCACGTACATTTGTACTACT 60.164 40.000 11.35 0.00 46.43 2.57
367 368 3.816091 TGCAATGCACGTACATTTGTAC 58.184 40.909 11.35 10.21 38.19 2.90
376 377 2.972144 GCCCGTTGCAATGCACGTA 61.972 57.895 21.52 2.21 38.71 3.57
377 378 4.341502 GCCCGTTGCAATGCACGT 62.342 61.111 21.52 0.00 38.71 4.49
419 420 1.042559 GGAGAGGTGGCTGGAGAGAG 61.043 65.000 0.00 0.00 0.00 3.20
421 422 0.906756 TTGGAGAGGTGGCTGGAGAG 60.907 60.000 0.00 0.00 0.00 3.20
424 425 1.004745 GATTTTGGAGAGGTGGCTGGA 59.995 52.381 0.00 0.00 0.00 3.86
425 426 1.467920 GATTTTGGAGAGGTGGCTGG 58.532 55.000 0.00 0.00 0.00 4.85
426 427 1.467920 GGATTTTGGAGAGGTGGCTG 58.532 55.000 0.00 0.00 0.00 4.85
427 428 0.035056 CGGATTTTGGAGAGGTGGCT 60.035 55.000 0.00 0.00 0.00 4.75
428 429 1.032114 CCGGATTTTGGAGAGGTGGC 61.032 60.000 0.00 0.00 0.00 5.01
429 430 1.032114 GCCGGATTTTGGAGAGGTGG 61.032 60.000 5.05 0.00 0.00 4.61
430 431 1.032114 GGCCGGATTTTGGAGAGGTG 61.032 60.000 5.05 0.00 0.00 4.00
431 432 1.303282 GGCCGGATTTTGGAGAGGT 59.697 57.895 5.05 0.00 0.00 3.85
432 433 1.453928 GGGCCGGATTTTGGAGAGG 60.454 63.158 5.05 0.00 0.00 3.69
435 436 1.604147 GGTTGGGCCGGATTTTGGAG 61.604 60.000 5.05 0.00 0.00 3.86
491 595 1.324383 GAAGAGGACCTCCCGATCTC 58.676 60.000 18.32 2.22 40.87 2.75
529 633 4.247380 GGCGCTGAGGGGATCCAG 62.247 72.222 15.23 2.97 34.83 3.86
607 720 3.791353 GCAAAAGATCTAATTTTCCGGCG 59.209 43.478 0.00 0.00 0.00 6.46
608 721 4.112634 GGCAAAAGATCTAATTTTCCGGC 58.887 43.478 0.00 0.00 0.00 6.13
609 722 4.441495 GGGGCAAAAGATCTAATTTTCCGG 60.441 45.833 0.00 0.00 0.00 5.14
610 723 4.159506 TGGGGCAAAAGATCTAATTTTCCG 59.840 41.667 0.00 0.00 0.00 4.30
612 725 6.286240 AGTGGGGCAAAAGATCTAATTTTC 57.714 37.500 0.00 0.00 0.00 2.29
614 727 6.686484 AAAGTGGGGCAAAAGATCTAATTT 57.314 33.333 0.00 0.00 0.00 1.82
615 728 6.723977 TGTAAAGTGGGGCAAAAGATCTAATT 59.276 34.615 0.00 0.00 0.00 1.40
617 730 5.636123 TGTAAAGTGGGGCAAAAGATCTAA 58.364 37.500 0.00 0.00 0.00 2.10
618 731 5.249780 TGTAAAGTGGGGCAAAAGATCTA 57.750 39.130 0.00 0.00 0.00 1.98
619 732 4.112634 TGTAAAGTGGGGCAAAAGATCT 57.887 40.909 0.00 0.00 0.00 2.75
621 734 3.769300 GGATGTAAAGTGGGGCAAAAGAT 59.231 43.478 0.00 0.00 0.00 2.40
622 735 3.161866 GGATGTAAAGTGGGGCAAAAGA 58.838 45.455 0.00 0.00 0.00 2.52
624 737 2.252714 GGGATGTAAAGTGGGGCAAAA 58.747 47.619 0.00 0.00 0.00 2.44
625 738 1.551329 GGGGATGTAAAGTGGGGCAAA 60.551 52.381 0.00 0.00 0.00 3.68
626 739 0.040499 GGGGATGTAAAGTGGGGCAA 59.960 55.000 0.00 0.00 0.00 4.52
628 741 0.261696 ATGGGGATGTAAAGTGGGGC 59.738 55.000 0.00 0.00 0.00 5.80
629 742 2.846665 AATGGGGATGTAAAGTGGGG 57.153 50.000 0.00 0.00 0.00 4.96
630 743 4.788925 TCTAATGGGGATGTAAAGTGGG 57.211 45.455 0.00 0.00 0.00 4.61
631 744 8.940397 ATTTATCTAATGGGGATGTAAAGTGG 57.060 34.615 0.00 0.00 0.00 4.00
632 745 9.014297 GGATTTATCTAATGGGGATGTAAAGTG 57.986 37.037 0.00 0.00 0.00 3.16
633 746 8.170730 GGGATTTATCTAATGGGGATGTAAAGT 58.829 37.037 0.00 0.00 0.00 2.66
636 749 7.905144 AGGGATTTATCTAATGGGGATGTAA 57.095 36.000 0.00 0.00 0.00 2.41
637 750 7.036863 GGAAGGGATTTATCTAATGGGGATGTA 60.037 40.741 0.00 0.00 0.00 2.29
641 754 4.606255 GGGAAGGGATTTATCTAATGGGGA 59.394 45.833 0.00 0.00 0.00 4.81
642 755 4.608028 AGGGAAGGGATTTATCTAATGGGG 59.392 45.833 0.00 0.00 0.00 4.96
644 757 6.216456 AGCTAGGGAAGGGATTTATCTAATGG 59.784 42.308 0.00 0.00 0.00 3.16
645 758 7.264294 AGCTAGGGAAGGGATTTATCTAATG 57.736 40.000 0.00 0.00 0.00 1.90
646 759 7.896806 AAGCTAGGGAAGGGATTTATCTAAT 57.103 36.000 0.00 0.00 0.00 1.73
647 760 7.038231 GCTAAGCTAGGGAAGGGATTTATCTAA 60.038 40.741 0.00 0.00 0.00 2.10
648 761 6.440965 GCTAAGCTAGGGAAGGGATTTATCTA 59.559 42.308 0.00 0.00 0.00 1.98
649 762 5.249622 GCTAAGCTAGGGAAGGGATTTATCT 59.750 44.000 0.00 0.00 0.00 1.98
651 764 5.166407 AGCTAAGCTAGGGAAGGGATTTAT 58.834 41.667 0.00 0.00 36.99 1.40
653 766 3.398490 AGCTAAGCTAGGGAAGGGATTT 58.602 45.455 0.00 0.00 36.99 2.17
655 768 2.708325 CAAGCTAAGCTAGGGAAGGGAT 59.292 50.000 0.00 0.00 38.25 3.85
656 769 2.119495 CAAGCTAAGCTAGGGAAGGGA 58.881 52.381 0.00 0.00 38.25 4.20
657 770 1.475930 GCAAGCTAAGCTAGGGAAGGG 60.476 57.143 3.96 0.00 38.25 3.95
661 774 1.123928 GAGGCAAGCTAAGCTAGGGA 58.876 55.000 10.47 0.00 38.25 4.20
662 775 1.069978 GAGAGGCAAGCTAAGCTAGGG 59.930 57.143 10.47 0.00 38.25 3.53
663 776 1.269517 CGAGAGGCAAGCTAAGCTAGG 60.270 57.143 10.47 0.00 38.25 3.02
664 777 2.132740 CGAGAGGCAAGCTAAGCTAG 57.867 55.000 10.47 0.00 38.25 3.42
678 791 0.108138 AAAAGATGGTCGGCCGAGAG 60.108 55.000 31.97 0.00 37.67 3.20
680 793 0.447801 CAAAAAGATGGTCGGCCGAG 59.552 55.000 31.97 8.93 37.67 4.63
683 796 1.215382 GCCAAAAAGATGGTCGGCC 59.785 57.895 0.00 0.00 42.75 6.13
684 797 1.215382 GGCCAAAAAGATGGTCGGC 59.785 57.895 0.00 0.00 42.75 5.54
687 800 1.154035 CGCGGCCAAAAAGATGGTC 60.154 57.895 2.24 0.00 42.75 4.02
688 801 2.961768 CGCGGCCAAAAAGATGGT 59.038 55.556 2.24 0.00 42.75 3.55
789 902 0.179073 CGGAACAGGAGCATGGGTAG 60.179 60.000 0.00 0.00 0.00 3.18
832 945 1.807573 CGAAGAAGAGCCGCCTCAC 60.808 63.158 0.00 0.00 40.68 3.51
833 946 2.214181 GACGAAGAAGAGCCGCCTCA 62.214 60.000 0.00 0.00 40.68 3.86
834 947 1.517475 GACGAAGAAGAGCCGCCTC 60.517 63.158 0.00 0.00 38.42 4.70
835 948 1.979693 AGACGAAGAAGAGCCGCCT 60.980 57.895 0.00 0.00 0.00 5.52
964 1080 4.603131 TCAGAAAGAAATCCCCATCCAAG 58.397 43.478 0.00 0.00 0.00 3.61
981 1097 9.725019 ACATACATCTGACAATAAACTTCAGAA 57.275 29.630 4.72 0.00 46.70 3.02
1071 1196 8.948631 AATAATTCATATACGCACCCATCTAG 57.051 34.615 0.00 0.00 0.00 2.43
1074 1199 8.718102 ACTAATAATTCATATACGCACCCATC 57.282 34.615 0.00 0.00 0.00 3.51
1095 1220 9.695526 TTGTTTACGCTTAATCTCACTAACTAA 57.304 29.630 0.00 0.00 0.00 2.24
1098 1223 6.954297 GCTTGTTTACGCTTAATCTCACTAAC 59.046 38.462 0.00 0.00 0.00 2.34
1099 1224 6.091713 GGCTTGTTTACGCTTAATCTCACTAA 59.908 38.462 0.00 0.00 0.00 2.24
1123 1248 6.633325 ATTCTAGAGGATAATCCCACATGG 57.367 41.667 0.00 0.00 37.19 3.66
1146 1271 6.843069 GGTACAGTACAACCGTAAGAAAAA 57.157 37.500 12.89 0.00 43.02 1.94
1159 1294 1.538512 GTGAGCAGTCGGTACAGTACA 59.461 52.381 12.89 0.00 0.00 2.90
1160 1295 1.538512 TGTGAGCAGTCGGTACAGTAC 59.461 52.381 1.59 1.59 0.00 2.73
1161 1296 1.900245 TGTGAGCAGTCGGTACAGTA 58.100 50.000 0.00 0.00 0.00 2.74
1162 1297 1.037493 TTGTGAGCAGTCGGTACAGT 58.963 50.000 0.00 0.00 0.00 3.55
1163 1298 2.148916 TTTGTGAGCAGTCGGTACAG 57.851 50.000 0.00 0.00 0.00 2.74
1187 1322 2.233271 TCTCGACCCCCGTATATGAAC 58.767 52.381 0.00 0.00 39.75 3.18
1190 1325 4.015084 ACTAATCTCGACCCCCGTATATG 58.985 47.826 0.00 0.00 39.75 1.78
1193 1328 2.236766 CACTAATCTCGACCCCCGTAT 58.763 52.381 0.00 0.00 39.75 3.06
1194 1329 1.683943 CACTAATCTCGACCCCCGTA 58.316 55.000 0.00 0.00 39.75 4.02
1195 1330 1.673808 GCACTAATCTCGACCCCCGT 61.674 60.000 0.00 0.00 39.75 5.28
1196 1331 1.067582 GCACTAATCTCGACCCCCG 59.932 63.158 0.00 0.00 40.25 5.73
1197 1332 1.049289 AGGCACTAATCTCGACCCCC 61.049 60.000 0.00 0.00 36.02 5.40
1198 1333 0.389757 GAGGCACTAATCTCGACCCC 59.610 60.000 0.00 0.00 41.55 4.95
1199 1334 1.067821 CAGAGGCACTAATCTCGACCC 59.932 57.143 0.00 0.00 41.55 4.46
1200 1335 1.537135 GCAGAGGCACTAATCTCGACC 60.537 57.143 0.00 0.00 41.55 4.79
1201 1336 1.537135 GGCAGAGGCACTAATCTCGAC 60.537 57.143 0.00 0.00 41.55 4.20
1202 1337 0.747255 GGCAGAGGCACTAATCTCGA 59.253 55.000 0.00 0.00 41.55 4.04
1203 1338 0.749649 AGGCAGAGGCACTAATCTCG 59.250 55.000 0.00 0.00 41.55 4.04
1204 1339 2.093235 ACAAGGCAGAGGCACTAATCTC 60.093 50.000 0.00 0.00 41.55 2.75
1206 1341 2.409948 ACAAGGCAGAGGCACTAATC 57.590 50.000 0.00 0.00 41.55 1.75
1208 1343 2.027192 CCTAACAAGGCAGAGGCACTAA 60.027 50.000 0.00 0.00 41.55 2.24
1209 1344 1.555075 CCTAACAAGGCAGAGGCACTA 59.445 52.381 0.00 0.00 41.55 2.74
1211 1346 0.036875 ACCTAACAAGGCAGAGGCAC 59.963 55.000 0.00 0.00 43.71 5.01
1213 1348 1.454201 GAACCTAACAAGGCAGAGGC 58.546 55.000 0.00 0.00 40.13 4.70
1214 1349 1.275291 TCGAACCTAACAAGGCAGAGG 59.725 52.381 0.00 0.00 35.05 3.69
1215 1350 2.743636 TCGAACCTAACAAGGCAGAG 57.256 50.000 0.00 0.00 0.00 3.35
1216 1351 2.416836 CGATCGAACCTAACAAGGCAGA 60.417 50.000 10.26 0.00 0.00 4.26
1217 1352 1.927174 CGATCGAACCTAACAAGGCAG 59.073 52.381 10.26 0.00 0.00 4.85
1218 1353 1.546923 TCGATCGAACCTAACAAGGCA 59.453 47.619 16.99 0.00 0.00 4.75
1219 1354 2.288961 TCGATCGAACCTAACAAGGC 57.711 50.000 16.99 0.00 0.00 4.35
1220 1355 4.504461 CAGATTCGATCGAACCTAACAAGG 59.496 45.833 31.27 11.34 36.91 3.61
1221 1356 4.026475 GCAGATTCGATCGAACCTAACAAG 60.026 45.833 31.27 16.25 36.91 3.16
1333 1478 5.813672 GGATATTAAGTAACACTTGCGTGGA 59.186 40.000 1.84 0.00 45.50 4.02
1360 1505 2.624636 GCTGAATTTGCCCAGGAAATG 58.375 47.619 0.00 0.00 0.00 2.32
1398 1543 4.395583 AACCGACCGAGCGACGAC 62.396 66.667 0.00 0.00 45.77 4.34
1399 1544 4.394078 CAACCGACCGAGCGACGA 62.394 66.667 0.00 0.00 45.77 4.20
1401 1546 4.353437 ACCAACCGACCGAGCGAC 62.353 66.667 0.00 0.00 0.00 5.19
1402 1547 4.047059 GACCAACCGACCGAGCGA 62.047 66.667 0.00 0.00 0.00 4.93
1405 1550 3.216944 AACCGACCAACCGACCGAG 62.217 63.158 0.00 0.00 0.00 4.63
1406 1551 3.225798 AACCGACCAACCGACCGA 61.226 61.111 0.00 0.00 0.00 4.69
1407 1552 3.039588 CAACCGACCAACCGACCG 61.040 66.667 0.00 0.00 0.00 4.79
1408 1553 3.351416 GCAACCGACCAACCGACC 61.351 66.667 0.00 0.00 0.00 4.79
1409 1554 2.280592 AGCAACCGACCAACCGAC 60.281 61.111 0.00 0.00 0.00 4.79
1410 1555 2.280524 CAGCAACCGACCAACCGA 60.281 61.111 0.00 0.00 0.00 4.69
1411 1556 2.590575 ACAGCAACCGACCAACCG 60.591 61.111 0.00 0.00 0.00 4.44
1412 1557 1.098712 TTGACAGCAACCGACCAACC 61.099 55.000 0.00 0.00 0.00 3.77
1413 1558 0.028902 GTTGACAGCAACCGACCAAC 59.971 55.000 0.00 0.00 46.80 3.77
1414 1559 2.399856 GTTGACAGCAACCGACCAA 58.600 52.632 0.00 0.00 46.80 3.67
1415 1560 4.134623 GTTGACAGCAACCGACCA 57.865 55.556 0.00 0.00 46.80 4.02
1422 1567 6.260714 GGATCACATATACATGTTGACAGCAA 59.739 38.462 2.30 0.00 42.98 3.91
1423 1568 5.759763 GGATCACATATACATGTTGACAGCA 59.240 40.000 2.30 0.00 42.98 4.41
1424 1569 5.994054 AGGATCACATATACATGTTGACAGC 59.006 40.000 2.30 0.00 42.98 4.40
1425 1570 6.073385 GCAGGATCACATATACATGTTGACAG 60.073 42.308 2.30 0.00 42.98 3.51
1426 1571 5.759763 GCAGGATCACATATACATGTTGACA 59.240 40.000 2.30 0.00 42.98 3.58
1427 1572 5.759763 TGCAGGATCACATATACATGTTGAC 59.240 40.000 2.30 0.00 42.98 3.18
1428 1573 5.927819 TGCAGGATCACATATACATGTTGA 58.072 37.500 2.30 0.84 42.98 3.18
1429 1574 6.812879 ATGCAGGATCACATATACATGTTG 57.187 37.500 2.30 0.00 42.98 3.33
1430 1575 7.828508 AAATGCAGGATCACATATACATGTT 57.171 32.000 2.30 0.00 42.98 2.71
1431 1576 7.828508 AAAATGCAGGATCACATATACATGT 57.171 32.000 2.69 2.69 46.58 3.21
1432 1577 8.139350 ACAAAAATGCAGGATCACATATACATG 58.861 33.333 0.00 0.00 38.21 3.21
1433 1578 8.139350 CACAAAAATGCAGGATCACATATACAT 58.861 33.333 0.00 0.00 0.00 2.29
1434 1579 7.338957 TCACAAAAATGCAGGATCACATATACA 59.661 33.333 0.00 0.00 0.00 2.29
1435 1580 7.706159 TCACAAAAATGCAGGATCACATATAC 58.294 34.615 0.00 0.00 0.00 1.47
1436 1581 7.878547 TCACAAAAATGCAGGATCACATATA 57.121 32.000 0.00 0.00 0.00 0.86
1437 1582 6.778834 TCACAAAAATGCAGGATCACATAT 57.221 33.333 0.00 0.00 0.00 1.78
1438 1583 6.587206 TTCACAAAAATGCAGGATCACATA 57.413 33.333 0.00 0.00 0.00 2.29
1439 1584 5.471556 TTCACAAAAATGCAGGATCACAT 57.528 34.783 0.00 0.00 0.00 3.21
1440 1585 4.933505 TTCACAAAAATGCAGGATCACA 57.066 36.364 0.00 0.00 0.00 3.58
1441 1586 4.151157 GCTTTCACAAAAATGCAGGATCAC 59.849 41.667 0.00 0.00 31.55 3.06
1442 1587 4.202233 TGCTTTCACAAAAATGCAGGATCA 60.202 37.500 0.00 0.00 35.22 2.92
1443 1588 4.309099 TGCTTTCACAAAAATGCAGGATC 58.691 39.130 0.00 0.00 35.22 3.36
1444 1589 4.339872 TGCTTTCACAAAAATGCAGGAT 57.660 36.364 0.00 0.00 35.22 3.24
1445 1590 3.815856 TGCTTTCACAAAAATGCAGGA 57.184 38.095 0.00 0.00 35.22 3.86
1446 1591 4.312443 AGATGCTTTCACAAAAATGCAGG 58.688 39.130 0.00 0.00 41.02 4.85
1447 1592 5.333798 CCAAGATGCTTTCACAAAAATGCAG 60.334 40.000 0.00 0.00 41.02 4.41
1448 1593 4.512198 CCAAGATGCTTTCACAAAAATGCA 59.488 37.500 0.00 0.00 41.65 3.96
1520 1665 1.689813 TGAAACGGAGCTTACAGGTGA 59.310 47.619 0.00 0.00 0.00 4.02
1521 1666 2.163818 TGAAACGGAGCTTACAGGTG 57.836 50.000 0.00 0.00 0.00 4.00
1523 1668 2.699954 ACATGAAACGGAGCTTACAGG 58.300 47.619 0.00 0.00 0.00 4.00
1524 1669 4.242475 TGTACATGAAACGGAGCTTACAG 58.758 43.478 0.00 0.00 0.00 2.74
1525 1670 4.260139 TGTACATGAAACGGAGCTTACA 57.740 40.909 0.00 0.00 0.00 2.41
1526 1671 4.927425 TCTTGTACATGAAACGGAGCTTAC 59.073 41.667 8.89 0.00 0.00 2.34
1527 1672 5.142061 TCTTGTACATGAAACGGAGCTTA 57.858 39.130 8.89 0.00 0.00 3.09
1528 1673 4.002906 TCTTGTACATGAAACGGAGCTT 57.997 40.909 8.89 0.00 0.00 3.74
1529 1674 3.678056 TCTTGTACATGAAACGGAGCT 57.322 42.857 8.89 0.00 0.00 4.09
1530 1675 4.451096 TCTTTCTTGTACATGAAACGGAGC 59.549 41.667 25.10 0.00 33.01 4.70
1551 1704 8.883731 CGGTAGTGAGAAAATATTCAAACATCT 58.116 33.333 0.00 0.00 38.06 2.90
1552 1705 7.640240 GCGGTAGTGAGAAAATATTCAAACATC 59.360 37.037 0.00 0.00 38.06 3.06
1553 1706 7.415206 GGCGGTAGTGAGAAAATATTCAAACAT 60.415 37.037 0.00 0.00 38.06 2.71
1554 1707 6.128117 GGCGGTAGTGAGAAAATATTCAAACA 60.128 38.462 0.00 0.00 38.06 2.83
1555 1708 6.128117 TGGCGGTAGTGAGAAAATATTCAAAC 60.128 38.462 0.00 0.00 38.06 2.93
1556 1709 5.941058 TGGCGGTAGTGAGAAAATATTCAAA 59.059 36.000 0.00 0.00 38.06 2.69
1557 1710 5.492895 TGGCGGTAGTGAGAAAATATTCAA 58.507 37.500 0.00 0.00 38.06 2.69
1558 1711 5.092554 TGGCGGTAGTGAGAAAATATTCA 57.907 39.130 0.00 0.00 38.06 2.57
1559 1712 6.255950 GTTTGGCGGTAGTGAGAAAATATTC 58.744 40.000 0.00 0.00 35.70 1.75
1560 1713 5.124936 GGTTTGGCGGTAGTGAGAAAATATT 59.875 40.000 0.00 0.00 0.00 1.28
1561 1714 4.638865 GGTTTGGCGGTAGTGAGAAAATAT 59.361 41.667 0.00 0.00 0.00 1.28
1562 1715 4.004982 GGTTTGGCGGTAGTGAGAAAATA 58.995 43.478 0.00 0.00 0.00 1.40
1563 1716 2.817844 GGTTTGGCGGTAGTGAGAAAAT 59.182 45.455 0.00 0.00 0.00 1.82
1564 1717 2.223745 GGTTTGGCGGTAGTGAGAAAA 58.776 47.619 0.00 0.00 0.00 2.29
1565 1718 1.874739 CGGTTTGGCGGTAGTGAGAAA 60.875 52.381 0.00 0.00 0.00 2.52
1566 1719 0.320073 CGGTTTGGCGGTAGTGAGAA 60.320 55.000 0.00 0.00 0.00 2.87
1567 1720 1.290955 CGGTTTGGCGGTAGTGAGA 59.709 57.895 0.00 0.00 0.00 3.27
1568 1721 1.740296 CCGGTTTGGCGGTAGTGAG 60.740 63.158 0.00 0.00 0.00 3.51
1569 1722 1.756408 TTCCGGTTTGGCGGTAGTGA 61.756 55.000 0.00 0.00 37.80 3.41
1570 1723 0.675522 ATTCCGGTTTGGCGGTAGTG 60.676 55.000 0.00 0.00 37.80 2.74
1571 1724 0.903942 TATTCCGGTTTGGCGGTAGT 59.096 50.000 0.00 0.00 37.80 2.73
1572 1725 1.134610 AGTATTCCGGTTTGGCGGTAG 60.135 52.381 0.00 0.00 37.80 3.18
1573 1726 0.903942 AGTATTCCGGTTTGGCGGTA 59.096 50.000 0.00 0.00 37.80 4.02
1574 1727 0.037160 AAGTATTCCGGTTTGGCGGT 59.963 50.000 0.00 0.00 37.80 5.68
1575 1728 2.027003 TAAGTATTCCGGTTTGGCGG 57.973 50.000 0.00 0.00 37.80 6.13
1585 1738 9.063615 ACCCAACAATCGAAATATAAGTATTCC 57.936 33.333 0.00 0.00 30.28 3.01
1779 1944 2.665185 ACGTGTCAGCGAAAGGGC 60.665 61.111 0.00 0.00 35.59 5.19
1804 1972 0.393537 GCTTCTCCATGTCCACCTGG 60.394 60.000 0.00 0.00 33.59 4.45
2544 2741 5.593909 TCAAGCCATGGAACGAAATAATCAT 59.406 36.000 18.40 0.00 0.00 2.45
2684 2881 8.534333 TTTGACACTATCTTTGACACTATCAC 57.466 34.615 0.00 0.00 36.92 3.06
2685 2882 9.554395 TTTTTGACACTATCTTTGACACTATCA 57.446 29.630 0.00 0.00 34.65 2.15
2716 2913 3.112263 TCCCTCCGCCCCATAATATAAG 58.888 50.000 0.00 0.00 0.00 1.73
2752 2949 1.570803 AGCAATGCAAAATAGGGGCA 58.429 45.000 8.35 0.00 42.43 5.36
2815 3012 7.602753 ACAAGATTATTACAGAAAAGTTGGCC 58.397 34.615 0.00 0.00 0.00 5.36
2935 3132 9.823647 TTGATTGGAATATCTAAGAACAGAGTC 57.176 33.333 0.00 0.00 0.00 3.36
3205 3402 8.494016 ACAGGAATCAATAACTAAACAGTAGC 57.506 34.615 0.00 0.00 0.00 3.58
3294 3492 6.424207 CAGGGAGTACACAAAGAAAGAACTAC 59.576 42.308 0.00 0.00 0.00 2.73
3506 3704 1.293179 GGCTTTGGTGCCCAATGTC 59.707 57.895 16.09 12.38 46.82 3.06
3732 3932 3.365767 GGAGCTCACATTCAGCAGTTTTC 60.366 47.826 17.19 0.00 39.56 2.29
3782 3982 4.323417 TGATCAGTATGCCGAAACAAGTT 58.677 39.130 0.00 0.00 34.76 2.66
4566 4902 1.650825 CGGCAGCAGGTTTTTGTTTT 58.349 45.000 0.00 0.00 0.00 2.43
4919 5261 2.113986 AGGTCAGCTGCACCAACC 59.886 61.111 26.77 20.70 36.23 3.77
5161 5503 4.766373 ACATACATGACAATGGAACTTGCA 59.234 37.500 0.00 0.00 38.19 4.08
5276 5622 6.273071 TGTACAAACTATGGTGATCTCATCG 58.727 40.000 0.00 3.46 0.00 3.84
5484 5832 4.821805 CACACTAAGGACCAGTCAAAATGT 59.178 41.667 0.00 0.00 0.00 2.71
5502 5850 6.886459 AGAATATTGTTTCTATGTGGCACACT 59.114 34.615 24.65 14.42 46.15 3.55
5699 6165 7.391275 TGATGTTTGAGATCAATGAGTAAAGCA 59.609 33.333 0.00 0.00 35.55 3.91
6368 6892 0.855598 TACTGGTACCCGGATAGCCT 59.144 55.000 10.07 0.00 33.36 4.58
6462 6986 1.753078 CATCCTCGTCCCGGAGACA 60.753 63.158 19.10 8.59 46.69 3.41
6663 7192 6.149308 TGAAAAGGCATATATATCACTTGCGG 59.851 38.462 8.47 0.00 34.17 5.69
6664 7193 7.095060 ACTGAAAAGGCATATATATCACTTGCG 60.095 37.037 8.47 0.00 34.17 4.85
6665 7194 8.103948 ACTGAAAAGGCATATATATCACTTGC 57.896 34.615 8.47 3.70 0.00 4.01
6666 7195 9.888878 CAACTGAAAAGGCATATATATCACTTG 57.111 33.333 8.47 0.00 0.00 3.16
6667 7196 9.071276 CCAACTGAAAAGGCATATATATCACTT 57.929 33.333 0.00 0.00 0.00 3.16
6668 7197 7.667219 CCCAACTGAAAAGGCATATATATCACT 59.333 37.037 0.00 0.00 0.00 3.41
6669 7198 7.448469 ACCCAACTGAAAAGGCATATATATCAC 59.552 37.037 0.00 0.00 0.00 3.06
6670 7199 7.526041 ACCCAACTGAAAAGGCATATATATCA 58.474 34.615 0.00 0.00 0.00 2.15
6671 7200 9.515226 TTACCCAACTGAAAAGGCATATATATC 57.485 33.333 0.00 0.00 0.00 1.63
6672 7201 9.875708 TTTACCCAACTGAAAAGGCATATATAT 57.124 29.630 0.00 0.00 0.00 0.86
6673 7202 9.875708 ATTTACCCAACTGAAAAGGCATATATA 57.124 29.630 0.00 0.00 0.00 0.86
6674 7203 8.641541 CATTTACCCAACTGAAAAGGCATATAT 58.358 33.333 0.00 0.00 0.00 0.86
6675 7204 7.617723 ACATTTACCCAACTGAAAAGGCATATA 59.382 33.333 0.00 0.00 0.00 0.86
6676 7205 6.440328 ACATTTACCCAACTGAAAAGGCATAT 59.560 34.615 0.00 0.00 0.00 1.78
6677 7206 5.777732 ACATTTACCCAACTGAAAAGGCATA 59.222 36.000 0.00 0.00 0.00 3.14
6678 7207 4.592778 ACATTTACCCAACTGAAAAGGCAT 59.407 37.500 0.00 0.00 0.00 4.40
6679 7208 3.964031 ACATTTACCCAACTGAAAAGGCA 59.036 39.130 0.00 0.00 0.00 4.75
6680 7209 4.600692 ACATTTACCCAACTGAAAAGGC 57.399 40.909 0.00 0.00 0.00 4.35
6681 7210 7.857734 AAAAACATTTACCCAACTGAAAAGG 57.142 32.000 0.00 0.00 0.00 3.11
6704 7233 1.234821 ATCACTCGCGGCAAGAAAAA 58.765 45.000 6.13 0.00 0.00 1.94
6705 7234 2.087501 TATCACTCGCGGCAAGAAAA 57.912 45.000 6.13 0.00 0.00 2.29
6706 7235 2.309528 ATATCACTCGCGGCAAGAAA 57.690 45.000 6.13 0.00 0.00 2.52
6707 7236 3.660501 ATATATCACTCGCGGCAAGAA 57.339 42.857 6.13 0.00 0.00 2.52
6708 7237 4.672409 CATATATATCACTCGCGGCAAGA 58.328 43.478 6.13 0.00 0.00 3.02
6719 7248 7.448469 ACCCAACTGAAAAGGCATATATATCAC 59.552 37.037 0.00 0.00 0.00 3.06
7159 7697 1.213537 CACCATTGAAGGCGGCAAG 59.786 57.895 13.08 0.00 0.00 4.01
7160 7698 2.929903 GCACCATTGAAGGCGGCAA 61.930 57.895 13.08 0.00 33.76 4.52
7553 8091 3.437795 CTACGTCGCCACCGGAGT 61.438 66.667 9.46 0.00 31.54 3.85
7578 8120 1.384525 CGACACCACAAAAGGGAACA 58.615 50.000 0.00 0.00 0.00 3.18
7642 8184 4.150897 ACTTGCTGTTTGTACCTTCTCA 57.849 40.909 0.00 0.00 0.00 3.27
7745 8297 1.007118 TGACAGATGACAGGGAGGCTA 59.993 52.381 0.00 0.00 0.00 3.93
7788 8356 7.496263 CAGAATTAGTAAACCCTAAGAAGAGGC 59.504 40.741 0.00 0.00 35.00 4.70
7972 8545 7.888250 TCATGTATATGGGTTTTGCATGTAA 57.112 32.000 0.00 0.00 35.25 2.41
8032 8605 1.814394 TGAACAGCATCTTGGACATGC 59.186 47.619 0.00 0.00 46.05 4.06
8038 8611 5.178996 GCTAGATACATGAACAGCATCTTGG 59.821 44.000 0.00 0.00 34.15 3.61
8061 8636 1.676967 CTGACAGCCCCCTTCTTGC 60.677 63.158 0.00 0.00 0.00 4.01
8072 8673 5.405269 ACAACAACAAAAAGAAACTGACAGC 59.595 36.000 1.25 0.00 0.00 4.40
8131 8732 1.859703 CGGCACACTTGTACGTAAACA 59.140 47.619 0.00 0.00 0.00 2.83
8216 8817 7.155655 TCTGTGTTTAAATTGATGCTATGCA 57.844 32.000 0.00 0.00 44.86 3.96
8240 8841 6.681368 GCCAATCTATCGCTCCAAAGATTTTT 60.681 38.462 0.00 0.00 36.73 1.94
8266 8867 8.020819 AGTGTTGATTATCGGTATTGTGTTTTG 58.979 33.333 0.00 0.00 0.00 2.44
8294 8895 4.299586 TGGTGGTCATGCTCAAGATAAA 57.700 40.909 0.00 0.00 0.00 1.40
8295 8896 3.998913 TGGTGGTCATGCTCAAGATAA 57.001 42.857 0.00 0.00 0.00 1.75
8366 8967 4.067972 ACTCGGCTTTTCAACTACTCAA 57.932 40.909 0.00 0.00 0.00 3.02
8368 8969 4.388165 GGTAACTCGGCTTTTCAACTACTC 59.612 45.833 0.00 0.00 0.00 2.59
8383 8984 7.467557 TTTACTAATTATTGCCGGTAACTCG 57.532 36.000 7.28 0.00 0.00 4.18
8412 9015 4.850347 TGACATGTTGCATCAATTGTCA 57.150 36.364 21.84 21.84 41.90 3.58
8416 9019 7.442969 AGTTTGATTTGACATGTTGCATCAATT 59.557 29.630 19.87 12.88 32.22 2.32
8551 9154 0.621862 CTTTACCTGCCCCCTCTCCT 60.622 60.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.