Multiple sequence alignment - TraesCS2A01G567300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G567300 chr2A 100.000 6523 0 0 1 6523 766150862 766157384 0.000000e+00 12046.0
1 TraesCS2A01G567300 chr2A 85.763 583 37 22 1544 2109 100651705 100652258 5.670000e-160 575.0
2 TraesCS2A01G567300 chr2A 87.149 249 29 3 4325 4572 766154600 766154846 4.980000e-71 279.0
3 TraesCS2A01G567300 chr2A 87.149 249 29 3 3739 3985 766155186 766155433 4.980000e-71 279.0
4 TraesCS2A01G567300 chr2A 75.131 571 107 26 1090 1632 623564634 623564071 1.090000e-57 235.0
5 TraesCS2A01G567300 chr2A 80.095 211 27 10 4352 4548 766154292 766154501 6.820000e-30 143.0
6 TraesCS2A01G567300 chr2A 80.189 212 25 11 3431 3640 766155213 766155409 6.820000e-30 143.0
7 TraesCS2A01G567300 chr2A 88.298 94 11 0 4597 4690 766154927 766155020 5.350000e-21 113.0
8 TraesCS2A01G567300 chr2A 88.298 94 11 0 4066 4159 766155458 766155551 5.350000e-21 113.0
9 TraesCS2A01G567300 chr2A 83.077 65 9 2 3063 3126 333768462 333768399 2.540000e-04 58.4
10 TraesCS2A01G567300 chr2A 100.000 28 0 0 786 813 130243861 130243888 1.200000e-02 52.8
11 TraesCS2A01G567300 chr2D 89.193 2008 112 34 417 2380 640997152 640999098 0.000000e+00 2409.0
12 TraesCS2A01G567300 chr2D 91.444 1648 95 18 4066 5681 641000874 641002507 0.000000e+00 2220.0
13 TraesCS2A01G567300 chr2D 88.296 581 68 0 2765 3345 640999573 641000153 0.000000e+00 697.0
14 TraesCS2A01G567300 chr2D 92.505 467 30 3 3586 4048 641000423 641000888 0.000000e+00 664.0
15 TraesCS2A01G567300 chr2D 94.340 371 18 2 2384 2751 640999132 640999502 3.410000e-157 566.0
16 TraesCS2A01G567300 chr2D 86.601 306 23 6 5742 6032 641002536 641002838 8.160000e-84 322.0
17 TraesCS2A01G567300 chr2D 80.499 441 33 13 6053 6464 641003431 641003847 8.280000e-74 289.0
18 TraesCS2A01G567300 chr2D 82.749 342 31 19 3651 3985 641001069 641001389 4.980000e-71 279.0
19 TraesCS2A01G567300 chr2D 80.506 395 46 17 4325 4690 641000575 641000967 2.320000e-69 274.0
20 TraesCS2A01G567300 chr2D 87.500 232 21 2 3257 3480 641000140 641000371 1.800000e-65 261.0
21 TraesCS2A01G567300 chr2D 80.000 305 57 4 1330 1632 480778288 480777986 8.510000e-54 222.0
22 TraesCS2A01G567300 chr2D 90.426 94 9 0 4066 4159 641001414 641001507 2.470000e-24 124.0
23 TraesCS2A01G567300 chr2D 80.451 133 24 2 4193 4325 641000140 641000270 4.160000e-17 100.0
24 TraesCS2A01G567300 chr2B 90.086 1856 119 32 4064 5879 800258243 800256413 0.000000e+00 2348.0
25 TraesCS2A01G567300 chr2B 89.816 1689 87 35 1099 2744 800261201 800259555 0.000000e+00 2087.0
26 TraesCS2A01G567300 chr2B 87.781 802 63 15 3257 4048 800259003 800258227 0.000000e+00 905.0
27 TraesCS2A01G567300 chr2B 84.468 573 81 3 2773 3345 800259554 800258990 5.710000e-155 558.0
28 TraesCS2A01G567300 chr2B 89.499 419 37 5 1544 1955 564851882 564852300 2.080000e-144 523.0
29 TraesCS2A01G567300 chr2B 80.156 640 92 24 1 615 800265756 800265127 4.640000e-121 446.0
30 TraesCS2A01G567300 chr2B 81.644 365 38 17 4351 4690 800258508 800258148 6.440000e-70 276.0
31 TraesCS2A01G567300 chr2B 78.535 396 51 24 3253 3643 800258118 800257752 5.090000e-56 230.0
32 TraesCS2A01G567300 chr2B 95.139 144 2 1 935 1078 800261621 800261483 8.510000e-54 222.0
33 TraesCS2A01G567300 chr2B 74.427 567 115 24 1090 1632 563923978 563923418 3.960000e-52 217.0
34 TraesCS2A01G567300 chr2B 87.952 83 6 2 2279 2357 800258621 800258539 1.940000e-15 95.3
35 TraesCS2A01G567300 chr2B 74.797 246 40 18 2120 2358 800259586 800259356 2.500000e-14 91.6
36 TraesCS2A01G567300 chr2B 93.478 46 3 0 2 47 800262622 800262577 1.170000e-07 69.4
37 TraesCS2A01G567300 chr1A 92.000 575 35 6 5311 5884 534640565 534640001 0.000000e+00 797.0
38 TraesCS2A01G567300 chr1A 85.592 583 38 22 1544 2109 213262804 213263357 2.640000e-158 569.0
39 TraesCS2A01G567300 chr1A 87.835 485 39 10 1544 2011 577579288 577579769 9.560000e-153 551.0
40 TraesCS2A01G567300 chr1A 78.457 311 57 9 1324 1629 278142259 278142564 1.860000e-45 195.0
41 TraesCS2A01G567300 chr3B 88.866 485 35 13 1544 2012 167060559 167061040 4.390000e-161 579.0
42 TraesCS2A01G567300 chr5A 85.862 580 36 22 1550 2112 74862367 74861817 5.670000e-160 575.0
43 TraesCS2A01G567300 chr5A 85.690 580 37 20 1550 2112 243772715 243772165 2.640000e-158 569.0
44 TraesCS2A01G567300 chr1B 85.592 583 38 21 1544 2109 634027673 634028226 2.640000e-158 569.0
45 TraesCS2A01G567300 chr1B 77.814 311 59 9 1324 1629 310927448 310927753 4.020000e-42 183.0
46 TraesCS2A01G567300 chr7A 88.347 472 45 7 1544 2007 67547128 67547597 5.710000e-155 558.0
47 TraesCS2A01G567300 chr4B 84.563 583 36 20 1544 2109 479219983 479220528 4.480000e-146 529.0
48 TraesCS2A01G567300 chr4B 77.232 224 29 12 1987 2190 36163077 36162856 1.920000e-20 111.0
49 TraesCS2A01G567300 chr7B 84.391 583 37 22 1544 2109 463479600 463480145 2.080000e-144 523.0
50 TraesCS2A01G567300 chr7B 75.949 474 91 18 1169 1632 602938570 602939030 8.510000e-54 222.0
51 TraesCS2A01G567300 chr5B 87.225 227 23 5 5658 5884 272998556 272998336 3.020000e-63 254.0
52 TraesCS2A01G567300 chr5B 82.222 90 12 4 3038 3126 621565072 621565158 2.520000e-09 75.0
53 TraesCS2A01G567300 chrUn 86.383 235 21 3 1786 2011 477524570 477524338 5.050000e-61 246.0
54 TraesCS2A01G567300 chr1D 78.457 311 57 9 1324 1629 217143355 217143660 1.860000e-45 195.0
55 TraesCS2A01G567300 chr1D 100.000 28 0 0 786 813 153947432 153947459 1.200000e-02 52.8
56 TraesCS2A01G567300 chr6B 77.876 226 29 15 2036 2243 661925069 661925291 3.190000e-23 121.0
57 TraesCS2A01G567300 chr6B 100.000 28 0 0 786 813 58672459 58672432 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G567300 chr2A 766150862 766157384 6522 False 1873.714286 12046 87.311143 1 6523 7 chr2A.!!$F3 6522
1 TraesCS2A01G567300 chr2A 100651705 100652258 553 False 575.000000 575 85.763000 1544 2109 1 chr2A.!!$F1 565
2 TraesCS2A01G567300 chr2A 623564071 623564634 563 True 235.000000 235 75.131000 1090 1632 1 chr2A.!!$R2 542
3 TraesCS2A01G567300 chr2D 640997152 641003847 6695 False 683.750000 2409 87.042500 417 6464 12 chr2D.!!$F1 6047
4 TraesCS2A01G567300 chr2B 800256413 800265756 9343 True 666.209091 2348 85.804727 1 5879 11 chr2B.!!$R2 5878
5 TraesCS2A01G567300 chr2B 563923418 563923978 560 True 217.000000 217 74.427000 1090 1632 1 chr2B.!!$R1 542
6 TraesCS2A01G567300 chr1A 534640001 534640565 564 True 797.000000 797 92.000000 5311 5884 1 chr1A.!!$R1 573
7 TraesCS2A01G567300 chr1A 213262804 213263357 553 False 569.000000 569 85.592000 1544 2109 1 chr1A.!!$F1 565
8 TraesCS2A01G567300 chr5A 74861817 74862367 550 True 575.000000 575 85.862000 1550 2112 1 chr5A.!!$R1 562
9 TraesCS2A01G567300 chr5A 243772165 243772715 550 True 569.000000 569 85.690000 1550 2112 1 chr5A.!!$R2 562
10 TraesCS2A01G567300 chr1B 634027673 634028226 553 False 569.000000 569 85.592000 1544 2109 1 chr1B.!!$F2 565
11 TraesCS2A01G567300 chr4B 479219983 479220528 545 False 529.000000 529 84.563000 1544 2109 1 chr4B.!!$F1 565
12 TraesCS2A01G567300 chr7B 463479600 463480145 545 False 523.000000 523 84.391000 1544 2109 1 chr7B.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.028505 GCCACATATGAGCAAGCACG 59.971 55.0 10.38 0.0 0.00 5.34 F
933 4226 0.036875 CTCGGGCTTCCTTCCAAGTT 59.963 55.0 0.00 0.0 0.00 2.66 F
2385 6009 0.458889 GCAATCGCCATGCAATGTGT 60.459 50.0 0.00 0.0 44.81 3.72 F
2805 6543 0.821517 ACCTGATCCGATGTTGCGTA 59.178 50.0 0.00 0.0 0.00 4.42 F
4259 8086 0.312416 GAGTGATCGATGGAGGGTCG 59.688 60.0 0.54 0.0 40.30 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 5620 0.236711 CAGACTTGCGCCTTCAACAG 59.763 55.000 4.18 0.0 0.00 3.16 R
2872 6610 1.064946 CACTCGCTAGCTTCTCCGG 59.935 63.158 13.93 0.0 0.00 5.14 R
3535 7356 0.179062 AGCCATGAATCCGACAGAGC 60.179 55.000 0.00 0.0 0.00 4.09 R
4446 8297 0.749818 TCGGACAAAGCAACAGCCAA 60.750 50.000 0.00 0.0 0.00 4.52 R
6061 10561 0.106819 ATCAGGGTGATGCAAGGAGC 60.107 55.000 0.00 0.0 45.96 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.882623 CCAACAGAAAAGGAGAGCCAC 59.117 52.381 0.00 0.00 36.29 5.01
45 46 2.121948 AGGAGAGCCACATATGAGCAA 58.878 47.619 19.69 0.00 36.29 3.91
50 51 0.028505 GCCACATATGAGCAAGCACG 59.971 55.000 10.38 0.00 0.00 5.34
51 52 0.028505 CCACATATGAGCAAGCACGC 59.971 55.000 10.38 0.00 0.00 5.34
53 54 1.277739 CATATGAGCAAGCACGCCG 59.722 57.895 0.00 0.00 0.00 6.46
56 57 0.953471 TATGAGCAAGCACGCCGTTT 60.953 50.000 0.00 0.00 0.00 3.60
90 94 2.612721 GGGGTGTGCAATGTTCCAATTC 60.613 50.000 0.00 0.00 0.00 2.17
95 99 1.342496 TGCAATGTTCCAATTCCGCAA 59.658 42.857 0.00 0.00 0.00 4.85
126 130 5.875359 GTCGTCCAATTTGAATAGGAGAGTT 59.125 40.000 0.00 0.00 0.00 3.01
131 135 8.401709 GTCCAATTTGAATAGGAGAGTTGAATC 58.598 37.037 0.00 0.00 0.00 2.52
140 144 0.107945 AGAGTTGAATCTGAGCGGGC 60.108 55.000 0.00 0.00 0.00 6.13
141 145 1.078143 AGTTGAATCTGAGCGGGCC 60.078 57.895 0.00 0.00 0.00 5.80
154 158 1.592400 GCGGGCCCTTACTTGTTTCC 61.592 60.000 22.43 0.00 0.00 3.13
157 161 2.290450 CGGGCCCTTACTTGTTTCCTTA 60.290 50.000 22.43 0.00 0.00 2.69
160 164 4.589798 GGGCCCTTACTTGTTTCCTTAAAA 59.410 41.667 17.04 0.00 0.00 1.52
161 165 5.279306 GGGCCCTTACTTGTTTCCTTAAAAG 60.279 44.000 17.04 0.00 0.00 2.27
165 169 5.836898 CCTTACTTGTTTCCTTAAAAGGGGT 59.163 40.000 8.87 2.55 46.47 4.95
166 170 6.239204 CCTTACTTGTTTCCTTAAAAGGGGTG 60.239 42.308 8.87 0.00 46.47 4.61
167 171 4.874199 ACTTGTTTCCTTAAAAGGGGTGA 58.126 39.130 8.87 0.00 46.47 4.02
168 172 5.274015 ACTTGTTTCCTTAAAAGGGGTGAA 58.726 37.500 8.87 0.00 46.47 3.18
169 173 5.903010 ACTTGTTTCCTTAAAAGGGGTGAAT 59.097 36.000 8.87 0.00 46.47 2.57
170 174 7.070629 ACTTGTTTCCTTAAAAGGGGTGAATA 58.929 34.615 8.87 0.00 46.47 1.75
171 175 6.904463 TGTTTCCTTAAAAGGGGTGAATAC 57.096 37.500 8.87 0.00 46.47 1.89
172 176 6.616577 TGTTTCCTTAAAAGGGGTGAATACT 58.383 36.000 8.87 0.00 46.47 2.12
180 202 1.591863 GGGTGAATACTCCTCGCGC 60.592 63.158 0.00 0.00 0.00 6.86
181 203 1.141019 GGTGAATACTCCTCGCGCA 59.859 57.895 8.75 0.00 0.00 6.09
200 222 3.612479 CGCAGTCCAATTTCAAAAGGAGG 60.612 47.826 0.00 0.00 0.00 4.30
201 223 3.862264 GCAGTCCAATTTCAAAAGGAGGC 60.862 47.826 0.00 0.37 0.00 4.70
210 232 5.458041 TTTCAAAAGGAGGCTCAAATCTG 57.542 39.130 17.69 6.67 0.00 2.90
213 235 4.520492 TCAAAAGGAGGCTCAAATCTGAAC 59.480 41.667 17.69 0.00 0.00 3.18
215 237 1.902508 AGGAGGCTCAAATCTGAACGA 59.097 47.619 17.69 0.00 0.00 3.85
217 239 2.275318 GAGGCTCAAATCTGAACGAGG 58.725 52.381 10.25 0.00 0.00 4.63
221 243 2.704572 CTCAAATCTGAACGAGGCCTT 58.295 47.619 6.77 0.00 0.00 4.35
222 244 3.861840 CTCAAATCTGAACGAGGCCTTA 58.138 45.455 6.77 0.00 0.00 2.69
223 245 3.596214 TCAAATCTGAACGAGGCCTTAC 58.404 45.455 6.77 0.00 0.00 2.34
225 247 3.983044 AATCTGAACGAGGCCTTACTT 57.017 42.857 6.77 0.00 0.00 2.24
226 248 2.743636 TCTGAACGAGGCCTTACTTG 57.256 50.000 6.77 0.00 0.00 3.16
227 249 1.968493 TCTGAACGAGGCCTTACTTGT 59.032 47.619 6.77 0.00 36.66 3.16
243 265 2.084546 CTTGTTTCCTTAAGAGGGGCG 58.915 52.381 3.36 0.00 43.72 6.13
271 293 2.555199 TGTTCAAATTTTGCAACCCCG 58.445 42.857 0.00 0.00 0.00 5.73
273 295 0.465705 TCAAATTTTGCAACCCCGCA 59.534 45.000 0.00 0.00 41.03 5.69
300 322 2.011540 ATCGAAAAGGAGAGCCGAAC 57.988 50.000 0.00 0.00 39.96 3.95
324 517 2.271944 GTTGTCCCTTGGCTACAACT 57.728 50.000 19.77 0.00 45.98 3.16
332 525 2.030274 CCTTGGCTACAACTTTTTCCGG 60.030 50.000 0.00 0.00 32.14 5.14
336 529 1.196127 GCTACAACTTTTTCCGGTCGG 59.804 52.381 0.00 2.52 0.00 4.79
356 549 1.066587 GCGTGCTAGACCTAGGCAG 59.933 63.158 9.30 4.92 33.87 4.85
363 556 3.231818 GCTAGACCTAGGCAGTCCATTA 58.768 50.000 9.30 0.00 34.67 1.90
372 565 5.071788 CCTAGGCAGTCCATTAATGACCTAA 59.928 44.000 17.23 4.59 33.74 2.69
400 768 6.486993 GGTAACAAGAAAGAAACATGAGGAGT 59.513 38.462 0.00 0.00 0.00 3.85
401 769 7.660208 GGTAACAAGAAAGAAACATGAGGAGTA 59.340 37.037 0.00 0.00 0.00 2.59
417 3681 2.108970 GAGTATTCCTCCACCTTCGGT 58.891 52.381 0.00 0.00 35.62 4.69
441 3705 4.000988 AGTATGTTCGAATTTCGCAACCT 58.999 39.130 13.86 12.97 40.21 3.50
447 3711 1.070175 CGAATTTCGCAACCTCGTGTT 60.070 47.619 5.78 0.00 37.80 3.32
456 3720 2.519377 AACCTCGTGTTGTCGAATCA 57.481 45.000 0.00 0.00 39.34 2.57
464 3728 4.025229 TCGTGTTGTCGAATCAAAAAGGAG 60.025 41.667 0.00 0.00 36.89 3.69
466 3730 5.503357 CGTGTTGTCGAATCAAAAAGGAGAA 60.503 40.000 0.00 0.00 0.00 2.87
470 3734 3.744426 GTCGAATCAAAAAGGAGAACCGA 59.256 43.478 0.00 0.00 41.83 4.69
473 3737 5.088739 CGAATCAAAAAGGAGAACCGAATG 58.911 41.667 0.00 0.00 41.83 2.67
479 3743 0.976641 AGGAGAACCGAATGTGAGCA 59.023 50.000 0.00 0.00 41.83 4.26
495 3759 3.975992 GCAGTCGGTTTGCTACATG 57.024 52.632 0.00 0.00 38.51 3.21
500 3764 4.606961 CAGTCGGTTTGCTACATGTTTTT 58.393 39.130 2.30 0.00 0.00 1.94
520 3784 3.717294 GGTCGGGTGGGTGCTGAT 61.717 66.667 0.00 0.00 0.00 2.90
521 3785 2.125106 GTCGGGTGGGTGCTGATC 60.125 66.667 0.00 0.00 0.00 2.92
523 3787 3.716195 CGGGTGGGTGCTGATCCA 61.716 66.667 0.00 0.00 0.00 3.41
524 3788 2.273449 GGGTGGGTGCTGATCCAG 59.727 66.667 0.00 0.00 30.66 3.86
536 3802 2.917933 CTGATCCAGGCAATCCGTTAA 58.082 47.619 0.00 0.00 37.47 2.01
541 3807 6.068010 TGATCCAGGCAATCCGTTAATTAAT 58.932 36.000 0.31 0.00 37.47 1.40
547 3813 5.531287 AGGCAATCCGTTAATTAATGACCTC 59.469 40.000 17.33 4.29 37.47 3.85
585 3853 0.842030 ACAGAGGAGCATTCCCCACA 60.842 55.000 0.00 0.00 45.24 4.17
590 3858 0.107214 GGAGCATTCCCCACAATCGA 60.107 55.000 0.00 0.00 37.53 3.59
594 3862 1.290203 CATTCCCCACAATCGACGAG 58.710 55.000 3.01 0.00 0.00 4.18
597 3865 1.771565 TCCCCACAATCGACGAGTAT 58.228 50.000 3.01 0.00 0.00 2.12
599 3867 1.209128 CCCACAATCGACGAGTATGC 58.791 55.000 3.01 0.00 0.00 3.14
617 3885 1.582610 GCTCGAATTTCGCAACCCCA 61.583 55.000 13.86 0.00 40.21 4.96
618 3886 0.878416 CTCGAATTTCGCAACCCCAA 59.122 50.000 13.86 0.00 40.21 4.12
630 3901 2.798145 GCAACCCCAAGTTTGTCGAAAG 60.798 50.000 0.00 0.00 36.18 2.62
631 3902 2.685897 CAACCCCAAGTTTGTCGAAAGA 59.314 45.455 0.00 0.00 36.18 2.52
635 3906 1.266989 CCAAGTTTGTCGAAAGAGGGC 59.733 52.381 0.00 0.00 43.49 5.19
638 3909 1.964373 TTTGTCGAAAGAGGGCGCC 60.964 57.895 21.18 21.18 43.49 6.53
643 3914 2.464459 CGAAAGAGGGCGCCACATC 61.464 63.158 30.85 22.12 0.00 3.06
647 3918 0.678048 AAGAGGGCGCCACATCTTTC 60.678 55.000 30.85 12.90 0.00 2.62
652 3923 1.372087 GGCGCCACATCTTTCCTCTG 61.372 60.000 24.80 0.00 0.00 3.35
653 3924 0.674895 GCGCCACATCTTTCCTCTGT 60.675 55.000 0.00 0.00 0.00 3.41
654 3925 1.405526 GCGCCACATCTTTCCTCTGTA 60.406 52.381 0.00 0.00 0.00 2.74
664 3948 2.163818 TTCCTCTGTACAACAAGCCG 57.836 50.000 0.00 0.00 0.00 5.52
682 3966 3.067461 AGCCGATTCTCACTACACATCTC 59.933 47.826 0.00 0.00 0.00 2.75
684 3968 4.440802 GCCGATTCTCACTACACATCTCTT 60.441 45.833 0.00 0.00 0.00 2.85
688 3972 6.471841 CGATTCTCACTACACATCTCTTCTTG 59.528 42.308 0.00 0.00 0.00 3.02
689 3973 6.901081 TTCTCACTACACATCTCTTCTTGA 57.099 37.500 0.00 0.00 0.00 3.02
717 4003 3.387374 TGTTGCATCAAGTTGTTGGGATT 59.613 39.130 14.28 0.00 34.09 3.01
766 4059 5.476945 GGATATGTCCAATCCCCAACAATAC 59.523 44.000 3.16 0.00 44.42 1.89
848 4141 0.108138 ATTCTCTTGGTCTTCCGGCG 60.108 55.000 0.00 0.00 36.30 6.46
921 4214 4.888325 CCCCCATCTCCTCGGGCT 62.888 72.222 0.00 0.00 41.57 5.19
922 4215 2.770048 CCCCATCTCCTCGGGCTT 60.770 66.667 0.00 0.00 41.57 4.35
923 4216 2.812619 CCCCATCTCCTCGGGCTTC 61.813 68.421 0.00 0.00 41.57 3.86
924 4217 2.812619 CCCATCTCCTCGGGCTTCC 61.813 68.421 0.00 0.00 35.09 3.46
925 4218 1.764054 CCATCTCCTCGGGCTTCCT 60.764 63.158 0.00 0.00 0.00 3.36
926 4219 1.341156 CCATCTCCTCGGGCTTCCTT 61.341 60.000 0.00 0.00 0.00 3.36
927 4220 0.105778 CATCTCCTCGGGCTTCCTTC 59.894 60.000 0.00 0.00 0.00 3.46
928 4221 1.051556 ATCTCCTCGGGCTTCCTTCC 61.052 60.000 0.00 0.00 0.00 3.46
929 4222 1.990060 CTCCTCGGGCTTCCTTCCA 60.990 63.158 0.00 0.00 0.00 3.53
930 4223 1.537889 TCCTCGGGCTTCCTTCCAA 60.538 57.895 0.00 0.00 0.00 3.53
931 4224 1.078143 CCTCGGGCTTCCTTCCAAG 60.078 63.158 0.00 0.00 0.00 3.61
932 4225 1.679898 CTCGGGCTTCCTTCCAAGT 59.320 57.895 0.00 0.00 0.00 3.16
933 4226 0.036875 CTCGGGCTTCCTTCCAAGTT 59.963 55.000 0.00 0.00 0.00 2.66
1221 4793 3.782443 GCCGACCCCAAGACCGAT 61.782 66.667 0.00 0.00 0.00 4.18
1548 5138 1.228154 GGGGTGGAGCAAGTTCGTT 60.228 57.895 0.00 0.00 0.00 3.85
1957 5564 2.064762 GCATGCTCGAGGTACATCATC 58.935 52.381 15.58 0.00 0.00 2.92
1965 5572 3.259123 TCGAGGTACATCATCCATCCATG 59.741 47.826 8.44 0.00 0.00 3.66
1966 5573 3.259123 CGAGGTACATCATCCATCCATGA 59.741 47.826 8.44 0.00 37.20 3.07
1967 5574 4.081254 CGAGGTACATCATCCATCCATGAT 60.081 45.833 8.44 0.00 43.14 2.45
1970 5577 5.311385 AGGTACATCATCCATCCATGATTCA 59.689 40.000 0.00 0.00 40.86 2.57
1971 5578 6.011893 AGGTACATCATCCATCCATGATTCAT 60.012 38.462 0.00 0.00 40.86 2.57
1972 5579 6.318144 GGTACATCATCCATCCATGATTCATC 59.682 42.308 0.00 0.00 40.86 2.92
1973 5580 6.140968 ACATCATCCATCCATGATTCATCT 57.859 37.500 0.00 0.00 40.86 2.90
1974 5581 6.181190 ACATCATCCATCCATGATTCATCTC 58.819 40.000 0.00 0.00 40.86 2.75
1975 5582 6.012421 ACATCATCCATCCATGATTCATCTCT 60.012 38.462 0.00 0.00 40.86 3.10
1976 5583 5.805728 TCATCCATCCATGATTCATCTCTG 58.194 41.667 0.00 0.00 0.00 3.35
1979 5586 3.753797 CCATCCATGATTCATCTCTGCTG 59.246 47.826 0.00 0.00 0.00 4.41
1980 5587 2.847441 TCCATGATTCATCTCTGCTGC 58.153 47.619 0.00 0.00 0.00 5.25
1993 5600 2.799412 CTCTGCTGCGTTAATCCATCTC 59.201 50.000 0.00 0.00 0.00 2.75
1997 5604 3.181462 TGCTGCGTTAATCCATCTCATCT 60.181 43.478 0.00 0.00 0.00 2.90
2007 5620 6.551385 AATCCATCTCATCTTTGCGATAAC 57.449 37.500 0.00 0.00 0.00 1.89
2016 5629 5.122239 TCATCTTTGCGATAACTGTTGAAGG 59.878 40.000 2.69 0.00 0.00 3.46
2018 5631 1.075542 TGCGATAACTGTTGAAGGCG 58.924 50.000 2.69 1.27 0.00 5.52
2022 5635 2.474526 CGATAACTGTTGAAGGCGCAAG 60.475 50.000 10.83 0.00 43.44 4.01
2023 5636 1.961793 TAACTGTTGAAGGCGCAAGT 58.038 45.000 10.83 0.00 41.68 3.16
2035 5648 1.739466 GGCGCAAGTCTGATTGATTGA 59.261 47.619 10.83 0.00 40.30 2.57
2037 5650 3.547613 GGCGCAAGTCTGATTGATTGATC 60.548 47.826 10.83 0.00 40.30 2.92
2118 5731 4.635765 TGCTCTGCCATTCAATACAAGTAC 59.364 41.667 0.00 0.00 0.00 2.73
2129 5744 9.599866 CATTCAATACAAGTACAAGATAGTGGA 57.400 33.333 0.00 0.00 0.00 4.02
2217 5832 4.576053 TCCGCAAATCTGATTGATCGATTT 59.424 37.500 15.78 13.17 38.87 2.17
2228 5843 7.014615 TCTGATTGATCGATTTGAGTCCATCTA 59.985 37.037 0.00 0.00 0.00 1.98
2276 5899 1.991121 TAACTGTCGGTGTGAGTCCT 58.009 50.000 0.00 0.00 0.00 3.85
2277 5900 0.674534 AACTGTCGGTGTGAGTCCTC 59.325 55.000 0.00 0.00 0.00 3.71
2365 5989 3.077359 GGTTCTGAATGAGGGTTCACAG 58.923 50.000 0.00 0.00 35.83 3.66
2383 6007 4.819082 GCAATCGCCATGCAATGT 57.181 50.000 0.00 0.00 44.81 2.71
2384 6008 2.293765 GCAATCGCCATGCAATGTG 58.706 52.632 0.00 0.00 44.81 3.21
2385 6009 0.458889 GCAATCGCCATGCAATGTGT 60.459 50.000 0.00 0.00 44.81 3.72
2451 6107 8.190784 ACTATGTTTAGCCACTTGCATTTTATC 58.809 33.333 0.00 0.00 44.83 1.75
2461 6117 1.406180 TGCATTTTATCGCTGCATGCT 59.594 42.857 20.33 0.00 40.75 3.79
2467 6123 2.140065 TATCGCTGCATGCTGTAGAC 57.860 50.000 23.42 7.93 40.11 2.59
2567 6223 3.674997 TCAGGTCACTTGTCTATTTGCC 58.325 45.455 0.00 0.00 0.00 4.52
2601 6281 5.303078 ACTCTGCTTCTGGTGGTATATACTG 59.697 44.000 12.54 0.00 0.00 2.74
2602 6282 4.588951 TCTGCTTCTGGTGGTATATACTGG 59.411 45.833 12.54 0.22 0.00 4.00
2603 6283 4.552674 TGCTTCTGGTGGTATATACTGGA 58.447 43.478 12.54 2.32 0.00 3.86
2604 6284 4.966168 TGCTTCTGGTGGTATATACTGGAA 59.034 41.667 12.54 8.75 0.00 3.53
2605 6285 5.163343 TGCTTCTGGTGGTATATACTGGAAC 60.163 44.000 12.54 6.46 0.00 3.62
2606 6286 5.163343 GCTTCTGGTGGTATATACTGGAACA 60.163 44.000 12.54 5.49 0.00 3.18
2607 6287 6.631766 GCTTCTGGTGGTATATACTGGAACAA 60.632 42.308 12.54 0.48 38.70 2.83
2608 6288 7.446106 TTCTGGTGGTATATACTGGAACAAT 57.554 36.000 12.54 0.00 38.70 2.71
2609 6289 7.062749 TCTGGTGGTATATACTGGAACAATC 57.937 40.000 12.54 0.12 38.70 2.67
2610 6290 6.613679 TCTGGTGGTATATACTGGAACAATCA 59.386 38.462 12.54 3.95 38.70 2.57
2611 6291 6.826668 TGGTGGTATATACTGGAACAATCAG 58.173 40.000 12.54 0.00 38.70 2.90
2612 6292 6.613679 TGGTGGTATATACTGGAACAATCAGA 59.386 38.462 12.54 0.00 38.70 3.27
2613 6293 7.155328 GGTGGTATATACTGGAACAATCAGAG 58.845 42.308 12.54 0.00 38.70 3.35
2614 6294 7.015292 GGTGGTATATACTGGAACAATCAGAGA 59.985 40.741 12.54 0.00 38.70 3.10
2615 6295 8.589338 GTGGTATATACTGGAACAATCAGAGAT 58.411 37.037 12.54 0.00 38.70 2.75
2616 6296 8.588472 TGGTATATACTGGAACAATCAGAGATG 58.412 37.037 12.54 0.00 38.70 2.90
2617 6297 8.807118 GGTATATACTGGAACAATCAGAGATGA 58.193 37.037 12.54 0.00 38.70 2.92
2620 6300 5.495926 ACTGGAACAATCAGAGATGAACT 57.504 39.130 0.00 0.00 38.70 3.01
2621 6301 5.486526 ACTGGAACAATCAGAGATGAACTC 58.513 41.667 0.00 0.00 41.71 3.01
2622 6302 4.498241 TGGAACAATCAGAGATGAACTCG 58.502 43.478 0.00 0.00 43.11 4.18
2623 6303 4.220602 TGGAACAATCAGAGATGAACTCGA 59.779 41.667 0.00 0.00 43.11 4.04
2624 6304 5.105187 TGGAACAATCAGAGATGAACTCGAT 60.105 40.000 0.00 0.00 43.11 3.59
2634 6314 2.643933 TGAACTCGATCAGCAGTCAG 57.356 50.000 0.00 0.00 0.00 3.51
2639 6319 4.521130 ACTCGATCAGCAGTCAGTTTTA 57.479 40.909 0.00 0.00 0.00 1.52
2650 6330 7.231317 TCAGCAGTCAGTTTTAATTTGGAATCT 59.769 33.333 0.00 0.00 0.00 2.40
2707 6388 7.096065 GCATGTTACTTTTTGCCTTTACTGAAG 60.096 37.037 0.00 0.00 35.02 3.02
2721 6402 7.038659 CCTTTACTGAAGATACAAGAGAGTGG 58.961 42.308 0.00 0.00 37.57 4.00
2751 6432 4.361783 TCTTGGACATTCATACTCCCTCA 58.638 43.478 0.00 0.00 0.00 3.86
2754 6435 4.878968 TGGACATTCATACTCCCTCAGTA 58.121 43.478 0.00 0.00 42.09 2.74
2755 6436 5.277250 TGGACATTCATACTCCCTCAGTAA 58.723 41.667 0.00 0.00 41.17 2.24
2756 6437 5.724370 TGGACATTCATACTCCCTCAGTAAA 59.276 40.000 0.00 0.00 41.17 2.01
2757 6438 6.127054 TGGACATTCATACTCCCTCAGTAAAG 60.127 42.308 0.00 0.00 41.17 1.85
2758 6439 6.098409 GGACATTCATACTCCCTCAGTAAAGA 59.902 42.308 0.00 0.00 41.17 2.52
2805 6543 0.821517 ACCTGATCCGATGTTGCGTA 59.178 50.000 0.00 0.00 0.00 4.42
2819 6557 1.705256 TGCGTACACCGTTGAATCTC 58.295 50.000 0.00 0.00 39.32 2.75
2843 6581 7.823665 TCCAAATCTGATCAAAATTGAGTCTG 58.176 34.615 12.95 4.74 41.08 3.51
2854 6592 8.539770 TCAAAATTGAGTCTGTCTCTGTATTC 57.460 34.615 3.71 0.00 43.13 1.75
2872 6610 6.908825 TGTATTCCATTGTTCAGTTAACTGC 58.091 36.000 27.49 16.53 43.46 4.40
2878 6616 1.689813 TGTTCAGTTAACTGCCGGAGA 59.310 47.619 27.49 9.29 43.46 3.71
2886 6624 2.279120 CTGCCGGAGAAGCTAGCG 60.279 66.667 5.05 0.00 0.00 4.26
2969 6707 3.930229 GGTTCAAGTGTTTTGTTGGGTTC 59.070 43.478 0.00 0.00 0.00 3.62
3060 6798 3.643792 ACAAGTAGAAGAGACTGGCAAGT 59.356 43.478 0.00 0.00 40.21 3.16
3061 6799 3.951775 AGTAGAAGAGACTGGCAAGTG 57.048 47.619 0.00 0.00 36.52 3.16
3095 6833 5.772825 TCATAATTGCTGCTAATTCACCC 57.227 39.130 11.46 0.00 32.79 4.61
3096 6834 5.448654 TCATAATTGCTGCTAATTCACCCT 58.551 37.500 11.46 0.00 32.79 4.34
3099 6837 7.391554 TCATAATTGCTGCTAATTCACCCTATC 59.608 37.037 11.46 0.00 32.79 2.08
3129 6867 2.254546 TCCATCGTTGAACAAGTGCT 57.745 45.000 0.00 0.00 0.00 4.40
3147 6885 7.663905 ACAAGTGCTAATACTGAACCAAACATA 59.336 33.333 0.00 0.00 0.00 2.29
3149 6887 8.438676 AGTGCTAATACTGAACCAAACATATC 57.561 34.615 0.00 0.00 0.00 1.63
3150 6888 7.224753 AGTGCTAATACTGAACCAAACATATCG 59.775 37.037 0.00 0.00 0.00 2.92
3160 6898 6.261158 TGAACCAAACATATCGAACTTGTTGA 59.739 34.615 10.53 0.00 34.04 3.18
3162 6900 5.088739 CCAAACATATCGAACTTGTTGAGC 58.911 41.667 10.53 0.00 34.04 4.26
3166 6904 1.523758 ATCGAACTTGTTGAGCACCC 58.476 50.000 0.00 0.00 0.00 4.61
3187 6925 1.845791 TCCCATCCTGATTGCTGCTAA 59.154 47.619 0.00 0.00 0.00 3.09
3206 6944 6.182627 TGCTAATTCACCTGATCTGATGTTT 58.817 36.000 0.38 0.00 0.00 2.83
3207 6945 6.094464 TGCTAATTCACCTGATCTGATGTTTG 59.906 38.462 0.38 0.00 0.00 2.93
3215 6953 6.317893 CACCTGATCTGATGTTTGATTCATCA 59.682 38.462 0.38 8.06 45.93 3.07
3216 6954 7.013369 CACCTGATCTGATGTTTGATTCATCAT 59.987 37.037 8.66 5.07 46.55 2.45
3220 6958 9.131791 TGATCTGATGTTTGATTCATCATTGAT 57.868 29.630 8.66 8.86 46.55 2.57
3226 6964 5.105837 TGTTTGATTCATCATTGATTCCGCA 60.106 36.000 0.00 0.00 36.56 5.69
3234 6972 4.621068 TCATTGATTCCGCAAATCTGAC 57.379 40.909 9.49 0.00 43.61 3.51
3235 6973 4.009002 TCATTGATTCCGCAAATCTGACA 58.991 39.130 9.49 0.00 43.61 3.58
3238 6976 3.877559 TGATTCCGCAAATCTGACAGAT 58.122 40.909 12.37 12.37 43.61 2.90
3239 6977 4.264253 TGATTCCGCAAATCTGACAGATT 58.736 39.130 22.46 22.46 46.22 2.40
3245 6983 3.063180 CGCAAATCTGACAGATTGAGTCC 59.937 47.826 27.29 14.43 43.67 3.85
3249 6987 4.734398 ATCTGACAGATTGAGTCCAGTC 57.266 45.455 12.37 0.00 28.69 3.51
3275 7088 1.880027 CTGTTTGGTTCAGTACTGCCC 59.120 52.381 18.45 18.89 0.00 5.36
3276 7089 1.213182 TGTTTGGTTCAGTACTGCCCA 59.787 47.619 22.82 22.82 32.18 5.36
3280 7093 1.493022 TGGTTCAGTACTGCCCAGTTT 59.507 47.619 22.82 0.00 42.54 2.66
3316 7129 2.049959 CAGCTAGCGAGTGATTGATCG 58.950 52.381 9.55 0.00 41.79 3.69
3329 7142 2.879002 TTGATCGAGTCCATCTCTGC 57.121 50.000 0.00 0.00 40.75 4.26
3331 7144 1.680207 TGATCGAGTCCATCTCTGCAG 59.320 52.381 7.63 7.63 40.75 4.41
3348 7169 8.313944 TCTCTGCAGGTTTGGTTTAGTATATA 57.686 34.615 15.13 0.00 0.00 0.86
3356 7177 7.606456 AGGTTTGGTTTAGTATATATCGCCATG 59.394 37.037 0.00 0.00 0.00 3.66
3365 7186 5.939883 AGTATATATCGCCATGCATGTTTGT 59.060 36.000 24.58 10.84 0.00 2.83
3368 7189 3.865011 ATCGCCATGCATGTTTGTTTA 57.135 38.095 24.58 4.05 0.00 2.01
3371 7192 4.564041 TCGCCATGCATGTTTGTTTAAAT 58.436 34.783 24.58 0.00 0.00 1.40
3373 7194 5.080731 CGCCATGCATGTTTGTTTAAATTG 58.919 37.500 24.58 6.20 0.00 2.32
3395 7216 4.761739 TGTTTTGCTAGGTTCTGAATGAGG 59.238 41.667 0.00 0.00 0.00 3.86
3418 7239 3.395858 CGGCAAGCAATCTTTGACTAG 57.604 47.619 0.00 0.00 0.00 2.57
3426 7247 7.483059 GCAAGCAATCTTTGACTAGTAATTGAC 59.517 37.037 0.00 0.00 0.00 3.18
3486 7307 3.181490 TGCGTAGAGTTGATGCTATCGTT 60.181 43.478 0.00 0.00 0.00 3.85
3487 7308 3.422546 GCGTAGAGTTGATGCTATCGTTC 59.577 47.826 0.00 0.00 0.00 3.95
3489 7310 5.215903 CGTAGAGTTGATGCTATCGTTCAT 58.784 41.667 0.00 0.00 0.00 2.57
3491 7312 6.856426 CGTAGAGTTGATGCTATCGTTCATTA 59.144 38.462 0.00 0.00 0.00 1.90
3533 7354 1.406860 AATGTGGGTTTGGTGGTGGC 61.407 55.000 0.00 0.00 0.00 5.01
3535 7356 2.123511 TGGGTTTGGTGGTGGCTG 60.124 61.111 0.00 0.00 0.00 4.85
3547 7368 1.078848 GTGGCTGCTCTGTCGGATT 60.079 57.895 0.00 0.00 0.00 3.01
3556 7377 2.208431 CTCTGTCGGATTCATGGCTTC 58.792 52.381 0.00 0.00 0.00 3.86
3566 7387 4.036498 GGATTCATGGCTTCTGATCACTTG 59.964 45.833 0.00 0.00 0.00 3.16
3590 7411 1.745653 GTTTCCAATAGGACTGCTGGC 59.254 52.381 0.00 0.00 45.73 4.85
3603 7424 1.194121 TGCTGGCTCTGCTTCTGGTA 61.194 55.000 5.84 0.00 0.00 3.25
3617 7439 6.297582 TGCTTCTGGTAGTCTACTCTATACC 58.702 44.000 9.85 0.00 38.53 2.73
3628 7450 7.889469 AGTCTACTCTATACCGAAACAAACAA 58.111 34.615 0.00 0.00 0.00 2.83
3674 7496 4.619973 TCTGCATGTTTGTTTGATTGGTC 58.380 39.130 0.00 0.00 0.00 4.02
3706 7529 5.477984 AGTTATCTTCATGCATGTGTGGTTT 59.522 36.000 25.43 8.59 0.00 3.27
3728 7551 3.882888 TCAAGTGTTTTGCTAGGTTCTGG 59.117 43.478 0.00 0.00 0.00 3.86
3876 7699 2.594592 GGTGGCGGTTGCTCTGTT 60.595 61.111 0.00 0.00 42.25 3.16
3934 7757 2.417379 CCGACTCTGTTCTGGTGGTATG 60.417 54.545 0.00 0.00 0.00 2.39
3994 7817 8.650714 GTCAATTTTGATTTGGAGTTAGCAATC 58.349 33.333 0.00 0.00 39.73 2.67
4019 7842 4.624452 GCTTTTGGCTTGAATGATGTTCTC 59.376 41.667 0.00 0.00 38.06 2.87
4021 7844 3.726557 TGGCTTGAATGATGTTCTCCT 57.273 42.857 0.00 0.00 0.00 3.69
4031 7858 7.453393 TGAATGATGTTCTCCTTGTTACTTCT 58.547 34.615 0.00 0.00 0.00 2.85
4032 7859 8.593679 TGAATGATGTTCTCCTTGTTACTTCTA 58.406 33.333 0.00 0.00 0.00 2.10
4033 7860 9.606631 GAATGATGTTCTCCTTGTTACTTCTAT 57.393 33.333 0.00 0.00 0.00 1.98
4036 7863 9.256228 TGATGTTCTCCTTGTTACTTCTATACT 57.744 33.333 0.00 0.00 0.00 2.12
4037 7864 9.522804 GATGTTCTCCTTGTTACTTCTATACTG 57.477 37.037 0.00 0.00 0.00 2.74
4038 7865 8.418597 TGTTCTCCTTGTTACTTCTATACTGT 57.581 34.615 0.00 0.00 0.00 3.55
4039 7866 8.867097 TGTTCTCCTTGTTACTTCTATACTGTT 58.133 33.333 0.00 0.00 0.00 3.16
4072 7899 5.811399 TTTTTGCGGGAGATATACTGTTG 57.189 39.130 0.00 0.00 0.00 3.33
4218 8045 8.253810 TGTTTGGTTCAGTATTTTCATGTTCAA 58.746 29.630 0.00 0.00 0.00 2.69
4255 8082 1.198867 CTAGCGAGTGATCGATGGAGG 59.801 57.143 0.54 0.00 31.83 4.30
4259 8086 0.312416 GAGTGATCGATGGAGGGTCG 59.688 60.000 0.54 0.00 40.30 4.79
4286 8113 4.125703 TGCATGTTTTGGTTGATTGGTTC 58.874 39.130 0.00 0.00 0.00 3.62
4296 8123 4.759693 TGGTTGATTGGTTCAGTGTACATC 59.240 41.667 0.00 0.00 35.27 3.06
4311 8138 1.913778 ACATCACCATGCATGTGTGT 58.086 45.000 30.53 24.44 31.80 3.72
4329 8179 3.256879 TGTGTTTCAAGTGTTTTGCAGGA 59.743 39.130 0.00 0.00 0.00 3.86
4339 8189 4.405358 AGTGTTTTGCAGGAAATCTTGGAA 59.595 37.500 0.00 0.00 31.98 3.53
4409 8259 2.531206 GTAGAGTCGATGCTGTTGTCC 58.469 52.381 0.00 0.00 0.00 4.02
4458 8309 2.168106 TGTGATTTGTTGGCTGTTGCTT 59.832 40.909 0.00 0.00 39.59 3.91
4461 8312 2.758736 TTTGTTGGCTGTTGCTTTGT 57.241 40.000 0.00 0.00 39.59 2.83
4507 8358 1.298953 TTCCAATAGGGCTGGCTCTT 58.701 50.000 0.00 0.00 36.21 2.85
4564 8415 3.214328 ACTCGGTCAGCAGTCAATTTTT 58.786 40.909 0.00 0.00 0.00 1.94
4594 8445 5.966742 ATTCTGCTTGTTACTTCTTTCCC 57.033 39.130 0.00 0.00 0.00 3.97
4654 8505 4.513318 GCCATCAGCAGTAAGTCCTTTATC 59.487 45.833 0.00 0.00 42.97 1.75
4657 8508 5.957771 TCAGCAGTAAGTCCTTTATCCAT 57.042 39.130 0.00 0.00 0.00 3.41
4720 8571 3.077359 GTGCCATTAGCTCTTCACAGTT 58.923 45.455 0.00 0.00 44.23 3.16
4742 8593 8.517878 CAGTTATGAATGTCCAATTCAGAGTTT 58.482 33.333 6.86 0.00 40.80 2.66
4760 8611 8.730680 TCAGAGTTTTGTTATTTCTTATGGCTC 58.269 33.333 0.00 0.00 0.00 4.70
4761 8612 8.734386 CAGAGTTTTGTTATTTCTTATGGCTCT 58.266 33.333 0.00 0.00 0.00 4.09
4777 8647 4.759782 TGGCTCTATGTTAAGAGAAGTGC 58.240 43.478 5.09 0.00 44.93 4.40
4803 8676 5.603170 ATGTTGTCCATTCCATCAATTCC 57.397 39.130 0.00 0.00 0.00 3.01
4821 8694 8.728337 TCAATTCCTTGATTCTTCAGATAGTG 57.272 34.615 0.00 0.00 36.46 2.74
4823 8696 5.946942 TCCTTGATTCTTCAGATAGTGCT 57.053 39.130 0.00 0.00 32.27 4.40
4881 8754 8.097038 TGTATATCATTACTGGCTCCAAAGATC 58.903 37.037 0.00 0.00 0.00 2.75
4894 8767 5.526846 GCTCCAAAGATCCTTATCTGACTTG 59.473 44.000 0.00 0.00 41.81 3.16
4903 8776 5.804639 TCCTTATCTGACTTGCTGCTTAAA 58.195 37.500 0.00 0.00 0.00 1.52
4913 8786 7.786030 TGACTTGCTGCTTAAATCTATCTACT 58.214 34.615 0.00 0.00 0.00 2.57
4958 8831 2.816411 TCTGTGGTAGGGTCACTAAGG 58.184 52.381 0.00 0.00 36.21 2.69
5102 8975 2.045045 CTGGGGCCAGATTGCGAA 60.045 61.111 4.39 0.00 46.30 4.70
5129 9002 4.415150 ATGCTGCTGGGGTCACCG 62.415 66.667 0.00 0.00 44.64 4.94
5132 9005 2.124983 CTGCTGGGGTCACCGATG 60.125 66.667 0.00 0.00 44.64 3.84
5184 9057 1.551908 CCTCACTGAGCTGCCCTCTT 61.552 60.000 0.00 0.00 41.35 2.85
5433 9306 3.201290 GTCGATGGAACTGCTCATGAAT 58.799 45.455 0.00 0.00 0.00 2.57
5591 9470 0.040514 TGCTTTGTTTGCGACGATGG 60.041 50.000 0.00 0.00 0.00 3.51
5665 9548 3.451902 TGTAGTGATGATGATGCCTGTCA 59.548 43.478 0.00 0.00 0.00 3.58
5681 9564 1.493022 TGTCAGGCCAAGTGTAGGTTT 59.507 47.619 5.01 0.00 0.00 3.27
5684 9593 2.441750 TCAGGCCAAGTGTAGGTTTTCT 59.558 45.455 5.01 0.00 0.00 2.52
5685 9594 3.117663 TCAGGCCAAGTGTAGGTTTTCTT 60.118 43.478 5.01 0.00 0.00 2.52
5690 9599 5.047847 GCCAAGTGTAGGTTTTCTTTTTCC 58.952 41.667 0.00 0.00 0.00 3.13
5691 9600 5.394773 GCCAAGTGTAGGTTTTCTTTTTCCA 60.395 40.000 0.00 0.00 0.00 3.53
5693 9602 7.272244 CCAAGTGTAGGTTTTCTTTTTCCATT 58.728 34.615 0.00 0.00 0.00 3.16
5694 9603 8.417884 CCAAGTGTAGGTTTTCTTTTTCCATTA 58.582 33.333 0.00 0.00 0.00 1.90
5695 9604 9.244799 CAAGTGTAGGTTTTCTTTTTCCATTAC 57.755 33.333 0.00 0.00 0.00 1.89
5696 9605 7.948357 AGTGTAGGTTTTCTTTTTCCATTACC 58.052 34.615 0.00 0.00 0.00 2.85
5697 9606 7.562088 AGTGTAGGTTTTCTTTTTCCATTACCA 59.438 33.333 0.00 0.00 0.00 3.25
5698 9607 7.865889 GTGTAGGTTTTCTTTTTCCATTACCAG 59.134 37.037 0.00 0.00 0.00 4.00
5699 9608 5.853936 AGGTTTTCTTTTTCCATTACCAGC 58.146 37.500 0.00 0.00 0.00 4.85
5700 9609 4.994852 GGTTTTCTTTTTCCATTACCAGCC 59.005 41.667 0.00 0.00 0.00 4.85
5701 9610 5.454045 GGTTTTCTTTTTCCATTACCAGCCA 60.454 40.000 0.00 0.00 0.00 4.75
5702 9611 5.878406 TTTCTTTTTCCATTACCAGCCAA 57.122 34.783 0.00 0.00 0.00 4.52
5703 9612 6.432403 TTTCTTTTTCCATTACCAGCCAAT 57.568 33.333 0.00 0.00 0.00 3.16
5704 9613 6.432403 TTCTTTTTCCATTACCAGCCAATT 57.568 33.333 0.00 0.00 0.00 2.32
5705 9614 5.792741 TCTTTTTCCATTACCAGCCAATTG 58.207 37.500 0.00 0.00 0.00 2.32
5706 9615 5.306678 TCTTTTTCCATTACCAGCCAATTGT 59.693 36.000 4.43 0.00 0.00 2.71
5707 9616 4.799564 TTTCCATTACCAGCCAATTGTC 57.200 40.909 4.43 0.00 0.00 3.18
5708 9617 3.737559 TCCATTACCAGCCAATTGTCT 57.262 42.857 4.43 0.00 0.00 3.41
5709 9618 3.355378 TCCATTACCAGCCAATTGTCTG 58.645 45.455 9.53 9.53 0.00 3.51
5710 9619 3.091545 CCATTACCAGCCAATTGTCTGT 58.908 45.455 14.89 6.33 0.00 3.41
5711 9620 3.129287 CCATTACCAGCCAATTGTCTGTC 59.871 47.826 14.89 0.00 0.00 3.51
5712 9621 3.500448 TTACCAGCCAATTGTCTGTCA 57.500 42.857 14.89 0.00 0.00 3.58
5713 9622 1.901591 ACCAGCCAATTGTCTGTCAG 58.098 50.000 14.89 3.10 0.00 3.51
5714 9623 1.143684 ACCAGCCAATTGTCTGTCAGT 59.856 47.619 14.89 3.71 0.00 3.41
5715 9624 2.233271 CCAGCCAATTGTCTGTCAGTT 58.767 47.619 14.89 0.00 0.00 3.16
5716 9625 2.624838 CCAGCCAATTGTCTGTCAGTTT 59.375 45.455 14.89 0.00 0.00 2.66
5717 9626 3.304928 CCAGCCAATTGTCTGTCAGTTTC 60.305 47.826 14.89 0.00 0.00 2.78
5718 9627 3.316029 CAGCCAATTGTCTGTCAGTTTCA 59.684 43.478 8.33 0.00 0.00 2.69
5719 9628 3.316308 AGCCAATTGTCTGTCAGTTTCAC 59.684 43.478 4.43 0.00 0.00 3.18
5720 9629 3.316308 GCCAATTGTCTGTCAGTTTCACT 59.684 43.478 4.43 0.00 0.00 3.41
5721 9630 4.555511 GCCAATTGTCTGTCAGTTTCACTC 60.556 45.833 4.43 0.00 0.00 3.51
5722 9631 4.023707 CCAATTGTCTGTCAGTTTCACTCC 60.024 45.833 4.43 0.00 0.00 3.85
5723 9632 2.910688 TGTCTGTCAGTTTCACTCCC 57.089 50.000 0.00 0.00 0.00 4.30
5724 9633 2.115427 TGTCTGTCAGTTTCACTCCCA 58.885 47.619 0.00 0.00 0.00 4.37
5737 9646 3.743521 TCACTCCCATTCAGACAAACTG 58.256 45.455 0.00 0.00 46.97 3.16
5862 9775 6.552008 ACAGAAAATCTTTCCAGGTTCCATA 58.448 36.000 0.00 0.00 0.00 2.74
5871 9784 5.512942 TTCCAGGTTCCATATCTGTTTGA 57.487 39.130 0.00 0.00 0.00 2.69
5892 9815 2.961526 TTTCCTCTGATACAGTCCGC 57.038 50.000 0.00 0.00 32.61 5.54
5905 9828 4.361451 ACAGTCCGCATTCAATGATTTC 57.639 40.909 0.00 0.00 0.00 2.17
5912 9835 5.127519 TCCGCATTCAATGATTTCTCCATTT 59.872 36.000 0.00 0.00 32.40 2.32
5914 9837 6.237996 CCGCATTCAATGATTTCTCCATTTTG 60.238 38.462 0.00 0.00 32.40 2.44
5916 9839 7.253983 CGCATTCAATGATTTCTCCATTTTGAG 60.254 37.037 0.00 0.00 32.40 3.02
5918 9841 9.647797 CATTCAATGATTTCTCCATTTTGAGAA 57.352 29.630 0.00 0.00 46.77 2.87
5948 9871 5.767909 CAACGATTTCATTGCATTCTTTCG 58.232 37.500 0.00 0.00 0.00 3.46
5961 9884 5.298276 TGCATTCTTTCGTGTTTCCTTACTT 59.702 36.000 0.00 0.00 0.00 2.24
5963 9886 6.512741 GCATTCTTTCGTGTTTCCTTACTTGA 60.513 38.462 0.00 0.00 0.00 3.02
5967 9890 6.990349 TCTTTCGTGTTTCCTTACTTGATTCT 59.010 34.615 0.00 0.00 0.00 2.40
5969 9892 5.849510 TCGTGTTTCCTTACTTGATTCTCA 58.150 37.500 0.00 0.00 0.00 3.27
5975 9898 4.168101 TCCTTACTTGATTCTCACCTGGT 58.832 43.478 0.00 0.00 0.00 4.00
5981 9904 2.715046 TGATTCTCACCTGGTTGCATC 58.285 47.619 0.00 0.00 0.00 3.91
6023 9950 3.011818 ACATCATGCTTTCAGCGAATCA 58.988 40.909 0.00 0.00 46.26 2.57
6029 9956 3.076621 TGCTTTCAGCGAATCAGTCAAT 58.923 40.909 0.00 0.00 46.26 2.57
6032 9959 4.556523 GCTTTCAGCGAATCAGTCAATTTC 59.443 41.667 0.00 0.00 0.00 2.17
6035 9962 5.034554 TCAGCGAATCAGTCAATTTCAAC 57.965 39.130 0.00 0.00 0.00 3.18
6036 9963 3.842428 CAGCGAATCAGTCAATTTCAACG 59.158 43.478 0.00 0.00 0.00 4.10
6037 9964 3.498397 AGCGAATCAGTCAATTTCAACGT 59.502 39.130 0.00 0.00 0.00 3.99
6039 9966 4.074949 CGAATCAGTCAATTTCAACGTCG 58.925 43.478 0.00 0.00 0.00 5.12
6040 9967 4.376008 CGAATCAGTCAATTTCAACGTCGT 60.376 41.667 0.00 0.00 0.00 4.34
6041 9968 4.647291 ATCAGTCAATTTCAACGTCGTC 57.353 40.909 0.00 0.00 0.00 4.20
6042 9969 3.713288 TCAGTCAATTTCAACGTCGTCT 58.287 40.909 0.00 0.00 0.00 4.18
6043 9970 4.116961 TCAGTCAATTTCAACGTCGTCTT 58.883 39.130 0.00 0.00 0.00 3.01
6044 9971 4.026062 TCAGTCAATTTCAACGTCGTCTTG 60.026 41.667 0.00 0.00 0.00 3.02
6045 9972 4.026062 CAGTCAATTTCAACGTCGTCTTGA 60.026 41.667 0.00 0.00 0.00 3.02
6047 9974 4.025979 GTCAATTTCAACGTCGTCTTGACT 60.026 41.667 19.43 4.21 45.87 3.41
6050 9977 0.933047 TCAACGTCGTCTTGACTGCG 60.933 55.000 0.00 10.47 45.87 5.18
6051 9978 1.660575 AACGTCGTCTTGACTGCGG 60.661 57.895 0.00 0.00 45.87 5.69
6067 10567 3.394836 GGAGGCCGAGTGCTCCTT 61.395 66.667 0.00 0.00 40.92 3.36
6092 10592 1.470098 CACCCTGATGCTTCGGAAAAG 59.530 52.381 9.93 0.00 0.00 2.27
6093 10593 0.453390 CCCTGATGCTTCGGAAAAGC 59.547 55.000 9.93 2.87 43.29 3.51
6138 10638 0.108756 GTCTGGCCTTCGGACTACAC 60.109 60.000 3.32 0.00 45.85 2.90
6146 10646 4.415332 CGGACTACACGGCGCAGT 62.415 66.667 10.83 9.16 0.00 4.40
6148 10648 1.226603 GGACTACACGGCGCAGTAG 60.227 63.158 27.74 27.74 42.57 2.57
6149 10649 1.226603 GACTACACGGCGCAGTAGG 60.227 63.158 30.54 18.95 41.49 3.18
6150 10650 2.104331 CTACACGGCGCAGTAGGG 59.896 66.667 24.12 3.69 35.27 3.53
6151 10651 2.677524 TACACGGCGCAGTAGGGT 60.678 61.111 14.13 10.10 0.00 4.34
6152 10652 2.221906 CTACACGGCGCAGTAGGGTT 62.222 60.000 24.12 0.00 35.27 4.11
6182 10682 0.235665 CGCGCATCTTGTTGTGAGTT 59.764 50.000 8.75 0.00 0.00 3.01
6189 10689 4.384056 CATCTTGTTGTGAGTTGGACTCT 58.616 43.478 9.27 0.00 45.27 3.24
6204 10704 3.243367 TGGACTCTGTTTTTCGGCATTTG 60.243 43.478 0.00 0.00 0.00 2.32
6209 10709 3.118592 TCTGTTTTTCGGCATTTGGGTTT 60.119 39.130 0.00 0.00 0.00 3.27
6218 10718 2.425539 GCATTTGGGTTTTGATGGTGG 58.574 47.619 0.00 0.00 0.00 4.61
6226 10726 2.698274 GGTTTTGATGGTGGTTCCTTGT 59.302 45.455 0.00 0.00 37.07 3.16
6260 10760 8.160106 AGATGAACTTGTCTTATCCTCTGTTTT 58.840 33.333 0.00 0.00 0.00 2.43
6261 10761 8.697507 ATGAACTTGTCTTATCCTCTGTTTTT 57.302 30.769 0.00 0.00 0.00 1.94
6270 10770 0.951558 CCTCTGTTTTTGACCGGTGG 59.048 55.000 14.63 0.00 0.00 4.61
6288 10788 1.275291 TGGAACTCCGTGAAGTGGATC 59.725 52.381 0.00 0.00 39.43 3.36
6289 10789 1.630148 GAACTCCGTGAAGTGGATCG 58.370 55.000 0.00 0.00 34.32 3.69
6302 10802 2.690497 AGTGGATCGTCGTCTTCATCAT 59.310 45.455 0.00 0.00 0.00 2.45
6305 10805 3.119137 TGGATCGTCGTCTTCATCATTGT 60.119 43.478 0.00 0.00 0.00 2.71
6306 10806 3.243877 GGATCGTCGTCTTCATCATTGTG 59.756 47.826 0.00 0.00 0.00 3.33
6307 10807 1.992667 TCGTCGTCTTCATCATTGTGC 59.007 47.619 0.00 0.00 0.00 4.57
6308 10808 1.995484 CGTCGTCTTCATCATTGTGCT 59.005 47.619 0.00 0.00 0.00 4.40
6309 10809 2.222663 CGTCGTCTTCATCATTGTGCTG 60.223 50.000 0.00 0.00 0.00 4.41
6310 10810 1.733912 TCGTCTTCATCATTGTGCTGC 59.266 47.619 0.00 0.00 0.00 5.25
6369 10878 6.137104 AGATCCCATCTATCCAGGAATTTG 57.863 41.667 0.00 0.00 38.00 2.32
6373 10882 4.586001 CCCATCTATCCAGGAATTTGTTGG 59.414 45.833 0.00 0.00 0.00 3.77
6376 10885 5.708736 TCTATCCAGGAATTTGTTGGCTA 57.291 39.130 0.00 0.00 31.94 3.93
6378 10887 2.802719 TCCAGGAATTTGTTGGCTACC 58.197 47.619 0.00 0.00 31.94 3.18
6384 10912 4.043435 AGGAATTTGTTGGCTACCTTCTCT 59.957 41.667 0.00 0.00 0.00 3.10
6433 10961 0.036010 TGACCCTGCTAAAGCTCTGC 60.036 55.000 3.26 0.00 42.66 4.26
6435 10963 0.251634 ACCCTGCTAAAGCTCTGCTC 59.748 55.000 3.26 0.00 38.25 4.26
6450 10978 4.082523 CTCGGGCCGCCAAAGAGA 62.083 66.667 23.83 0.00 0.00 3.10
6453 10981 2.351276 GGGCCGCCAAAGAGAAGA 59.649 61.111 12.58 0.00 0.00 2.87
6457 10985 1.068264 GGCCGCCAAAGAGAAGAAAAG 60.068 52.381 3.91 0.00 0.00 2.27
6459 10987 1.068264 CCGCCAAAGAGAAGAAAAGGC 60.068 52.381 0.00 0.00 37.32 4.35
6460 10988 1.608590 CGCCAAAGAGAAGAAAAGGCA 59.391 47.619 0.00 0.00 40.58 4.75
6461 10989 2.351157 CGCCAAAGAGAAGAAAAGGCAG 60.351 50.000 0.00 0.00 40.58 4.85
6462 10990 2.608998 GCCAAAGAGAAGAAAAGGCAGC 60.609 50.000 0.00 0.00 40.29 5.25
6463 10991 2.889678 CCAAAGAGAAGAAAAGGCAGCT 59.110 45.455 0.00 0.00 0.00 4.24
6465 10993 4.202192 CCAAAGAGAAGAAAAGGCAGCTTT 60.202 41.667 0.00 0.00 0.00 3.51
6466 10994 4.581077 AAGAGAAGAAAAGGCAGCTTTG 57.419 40.909 0.00 0.00 0.00 2.77
6467 10995 2.295629 AGAGAAGAAAAGGCAGCTTTGC 59.704 45.455 0.00 0.00 0.00 3.68
6468 10996 2.295629 GAGAAGAAAAGGCAGCTTTGCT 59.704 45.455 0.00 0.00 40.77 3.91
6469 10997 2.295629 AGAAGAAAAGGCAGCTTTGCTC 59.704 45.455 0.00 0.00 36.40 4.26
6470 10998 0.964700 AGAAAAGGCAGCTTTGCTCC 59.035 50.000 0.00 0.00 36.40 4.70
6471 10999 0.675633 GAAAAGGCAGCTTTGCTCCA 59.324 50.000 0.00 0.00 36.40 3.86
6472 11000 1.069049 GAAAAGGCAGCTTTGCTCCAA 59.931 47.619 0.00 0.00 36.40 3.53
6473 11001 1.122227 AAAGGCAGCTTTGCTCCAAA 58.878 45.000 0.00 0.00 36.40 3.28
6503 11031 3.611766 AAAAGCAGCCTATGTAGTCGT 57.388 42.857 0.00 0.00 0.00 4.34
6504 11032 4.730949 AAAAGCAGCCTATGTAGTCGTA 57.269 40.909 0.00 0.00 0.00 3.43
6505 11033 3.992260 AAGCAGCCTATGTAGTCGTAG 57.008 47.619 0.00 0.00 34.09 3.51
6506 11034 3.210232 AGCAGCCTATGTAGTCGTAGA 57.790 47.619 0.00 0.00 35.76 2.59
6507 11035 3.142951 AGCAGCCTATGTAGTCGTAGAG 58.857 50.000 0.00 0.00 36.95 2.43
6508 11036 3.139850 GCAGCCTATGTAGTCGTAGAGA 58.860 50.000 0.00 0.00 36.95 3.10
6509 11037 3.187637 GCAGCCTATGTAGTCGTAGAGAG 59.812 52.174 0.00 0.00 36.95 3.20
6510 11038 3.749088 CAGCCTATGTAGTCGTAGAGAGG 59.251 52.174 0.00 0.00 36.95 3.69
6511 11039 3.075884 GCCTATGTAGTCGTAGAGAGGG 58.924 54.545 0.00 0.00 36.95 4.30
6512 11040 3.075884 CCTATGTAGTCGTAGAGAGGGC 58.924 54.545 0.00 0.00 36.95 5.19
6513 11041 2.730934 ATGTAGTCGTAGAGAGGGCA 57.269 50.000 0.00 0.00 36.95 5.36
6514 11042 2.730934 TGTAGTCGTAGAGAGGGCAT 57.269 50.000 0.00 0.00 36.95 4.40
6515 11043 2.298610 TGTAGTCGTAGAGAGGGCATG 58.701 52.381 0.00 0.00 36.95 4.06
6516 11044 1.001158 GTAGTCGTAGAGAGGGCATGC 60.001 57.143 9.90 9.90 36.95 4.06
6517 11045 1.299468 GTCGTAGAGAGGGCATGCG 60.299 63.158 12.44 0.00 36.95 4.73
6518 11046 1.753078 TCGTAGAGAGGGCATGCGT 60.753 57.895 12.44 0.26 0.00 5.24
6519 11047 1.589993 CGTAGAGAGGGCATGCGTG 60.590 63.158 12.44 0.09 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.071699 TCTCCTTTTCTGTTGGGACGG 59.928 52.381 0.00 0.00 0.00 4.79
21 22 3.563390 GCTCATATGTGGCTCTCCTTTTC 59.437 47.826 1.90 0.00 0.00 2.29
35 36 1.277739 CGGCGTGCTTGCTCATATG 59.722 57.895 0.00 0.00 34.52 1.78
56 57 1.067173 ACACCCCTCCCCCGTTAAAA 61.067 55.000 0.00 0.00 0.00 1.52
63 64 3.672503 ATTGCACACCCCTCCCCC 61.673 66.667 0.00 0.00 0.00 5.40
64 65 2.362889 CATTGCACACCCCTCCCC 60.363 66.667 0.00 0.00 0.00 4.81
68 69 0.105760 TTGGAACATTGCACACCCCT 60.106 50.000 0.00 0.00 39.30 4.79
69 70 0.975887 ATTGGAACATTGCACACCCC 59.024 50.000 0.00 0.00 39.30 4.95
95 99 3.540367 AAATTGGACGACGCGGGGT 62.540 57.895 12.47 7.70 0.00 4.95
126 130 0.980754 TAAGGGCCCGCTCAGATTCA 60.981 55.000 18.44 0.00 0.00 2.57
131 135 1.450312 CAAGTAAGGGCCCGCTCAG 60.450 63.158 18.44 8.82 0.00 3.35
154 158 5.116882 CGAGGAGTATTCACCCCTTTTAAG 58.883 45.833 0.00 0.00 0.00 1.85
157 161 2.355818 GCGAGGAGTATTCACCCCTTTT 60.356 50.000 0.00 0.00 0.00 2.27
160 164 1.392710 CGCGAGGAGTATTCACCCCT 61.393 60.000 0.00 0.00 0.00 4.79
161 165 1.067582 CGCGAGGAGTATTCACCCC 59.932 63.158 0.00 0.00 0.00 4.95
172 176 1.003839 AAATTGGACTGCGCGAGGA 60.004 52.632 12.10 0.00 0.00 3.71
177 199 2.061028 CCTTTTGAAATTGGACTGCGC 58.939 47.619 0.00 0.00 0.00 6.09
180 202 3.575687 AGCCTCCTTTTGAAATTGGACTG 59.424 43.478 0.00 0.00 0.00 3.51
181 203 3.829026 GAGCCTCCTTTTGAAATTGGACT 59.171 43.478 0.00 0.00 0.00 3.85
200 222 0.729690 GGCCTCGTTCAGATTTGAGC 59.270 55.000 0.00 0.00 34.15 4.26
201 223 2.393271 AGGCCTCGTTCAGATTTGAG 57.607 50.000 0.00 0.00 34.15 3.02
210 232 2.483106 GGAAACAAGTAAGGCCTCGTTC 59.517 50.000 5.23 2.17 0.00 3.95
213 235 2.474410 AGGAAACAAGTAAGGCCTCG 57.526 50.000 5.23 0.00 0.00 4.63
215 237 5.515008 CCTCTTAAGGAAACAAGTAAGGCCT 60.515 44.000 0.00 0.00 46.67 5.19
217 239 4.700692 CCCTCTTAAGGAAACAAGTAAGGC 59.299 45.833 1.85 0.00 46.67 4.35
221 243 3.307199 CGCCCCTCTTAAGGAAACAAGTA 60.307 47.826 1.85 0.00 46.67 2.24
222 244 2.552373 CGCCCCTCTTAAGGAAACAAGT 60.552 50.000 1.85 0.00 46.67 3.16
223 245 2.084546 CGCCCCTCTTAAGGAAACAAG 58.915 52.381 1.85 0.00 46.67 3.16
225 247 1.061546 ACGCCCCTCTTAAGGAAACA 58.938 50.000 1.85 0.00 46.67 2.83
226 248 1.271217 ACACGCCCCTCTTAAGGAAAC 60.271 52.381 1.85 0.00 46.67 2.78
227 249 1.061546 ACACGCCCCTCTTAAGGAAA 58.938 50.000 1.85 0.00 46.67 3.13
243 265 5.903764 TGCAAAATTTGAACATAGCACAC 57.096 34.783 10.26 0.00 0.00 3.82
271 293 3.863424 TCTCCTTTTCGATTGTACGATGC 59.137 43.478 0.00 0.00 41.82 3.91
273 295 4.113354 GCTCTCCTTTTCGATTGTACGAT 58.887 43.478 0.00 0.00 41.82 3.73
300 322 0.984230 TAGCCAAGGGACAACTCAGG 59.016 55.000 0.00 0.00 0.00 3.86
336 529 2.026301 CCTAGGTCTAGCACGCGC 59.974 66.667 5.73 0.00 38.99 6.86
345 538 4.101741 GTCATTAATGGACTGCCTAGGTCT 59.898 45.833 15.36 0.00 34.47 3.85
348 541 3.392616 AGGTCATTAATGGACTGCCTAGG 59.607 47.826 15.36 3.67 35.61 3.02
350 543 6.409234 CCTTTAGGTCATTAATGGACTGCCTA 60.409 42.308 15.36 14.49 35.61 3.93
372 565 6.265422 CCTCATGTTTCTTTCTTGTTACCCTT 59.735 38.462 0.00 0.00 0.00 3.95
412 3676 4.325204 CGAAATTCGAACATACTCACCGAA 59.675 41.667 10.18 0.00 43.74 4.30
417 3681 4.142988 GGTTGCGAAATTCGAACATACTCA 60.143 41.667 20.38 1.73 43.74 3.41
441 3705 3.872182 TCCTTTTTGATTCGACAACACGA 59.128 39.130 0.00 0.00 40.55 4.35
447 3711 3.496884 CGGTTCTCCTTTTTGATTCGACA 59.503 43.478 0.00 0.00 0.00 4.35
451 3715 5.858581 CACATTCGGTTCTCCTTTTTGATTC 59.141 40.000 0.00 0.00 0.00 2.52
456 3720 3.253432 GCTCACATTCGGTTCTCCTTTTT 59.747 43.478 0.00 0.00 0.00 1.94
464 3728 0.716108 CGACTGCTCACATTCGGTTC 59.284 55.000 0.00 0.00 43.14 3.62
466 3730 4.578913 CGACTGCTCACATTCGGT 57.421 55.556 0.00 0.00 43.14 4.69
470 3734 0.593128 GCAAACCGACTGCTCACATT 59.407 50.000 0.00 0.00 36.84 2.71
479 3743 4.911514 AAAAACATGTAGCAAACCGACT 57.088 36.364 0.00 0.00 0.00 4.18
510 3774 1.866483 ATTGCCTGGATCAGCACCCA 61.866 55.000 0.00 0.00 0.00 4.51
512 3776 1.105759 GGATTGCCTGGATCAGCACC 61.106 60.000 0.00 0.82 0.00 5.01
519 3783 6.016276 GTCATTAATTAACGGATTGCCTGGAT 60.016 38.462 0.00 0.00 0.00 3.41
520 3784 5.298276 GTCATTAATTAACGGATTGCCTGGA 59.702 40.000 0.00 0.00 0.00 3.86
521 3785 5.507315 GGTCATTAATTAACGGATTGCCTGG 60.507 44.000 0.00 0.00 0.00 4.45
523 3787 5.445964 AGGTCATTAATTAACGGATTGCCT 58.554 37.500 0.00 3.65 0.00 4.75
524 3788 5.298276 TGAGGTCATTAATTAACGGATTGCC 59.702 40.000 0.00 1.61 0.00 4.52
536 3802 6.582636 TCTTGCTACGATTGAGGTCATTAAT 58.417 36.000 0.00 0.00 0.00 1.40
541 3807 3.953712 TTCTTGCTACGATTGAGGTCA 57.046 42.857 0.00 0.00 0.00 4.02
547 3813 6.228273 TCTGTTTCTTTCTTGCTACGATTG 57.772 37.500 0.00 0.00 0.00 2.67
594 3862 2.538939 GGGTTGCGAAATTCGAGCATAC 60.539 50.000 20.38 8.14 43.74 2.39
597 3865 1.582610 GGGGTTGCGAAATTCGAGCA 61.583 55.000 20.38 5.48 43.74 4.26
599 3867 0.878416 TTGGGGTTGCGAAATTCGAG 59.122 50.000 20.38 0.00 43.74 4.04
602 3870 2.799978 CAAACTTGGGGTTGCGAAATTC 59.200 45.455 0.00 0.00 38.29 2.17
607 3875 1.440938 CGACAAACTTGGGGTTGCGA 61.441 55.000 0.00 0.00 38.29 5.10
617 3885 1.226746 CGCCCTCTTTCGACAAACTT 58.773 50.000 0.00 0.00 0.00 2.66
618 3886 1.228657 GCGCCCTCTTTCGACAAACT 61.229 55.000 0.00 0.00 0.00 2.66
630 3901 2.115291 GGAAAGATGTGGCGCCCTC 61.115 63.158 26.77 17.95 0.00 4.30
631 3902 2.044946 GGAAAGATGTGGCGCCCT 60.045 61.111 26.77 11.08 0.00 5.19
635 3906 2.271800 GTACAGAGGAAAGATGTGGCG 58.728 52.381 0.00 0.00 0.00 5.69
638 3909 5.334414 GCTTGTTGTACAGAGGAAAGATGTG 60.334 44.000 0.00 0.00 0.00 3.21
643 3914 2.480419 CGGCTTGTTGTACAGAGGAAAG 59.520 50.000 0.00 0.00 0.00 2.62
647 3918 2.386661 ATCGGCTTGTTGTACAGAGG 57.613 50.000 0.00 0.00 0.00 3.69
652 3923 3.326747 AGTGAGAATCGGCTTGTTGTAC 58.673 45.455 0.00 0.00 38.61 2.90
653 3924 3.678056 AGTGAGAATCGGCTTGTTGTA 57.322 42.857 0.00 0.00 38.61 2.41
654 3925 2.550830 AGTGAGAATCGGCTTGTTGT 57.449 45.000 0.00 0.00 38.61 3.32
664 3948 7.542890 TCAAGAAGAGATGTGTAGTGAGAATC 58.457 38.462 0.00 0.00 0.00 2.52
682 3966 4.923893 TGATGCAACAACAACTCAAGAAG 58.076 39.130 0.00 0.00 0.00 2.85
684 3968 4.398988 ACTTGATGCAACAACAACTCAAGA 59.601 37.500 22.63 0.00 41.16 3.02
688 3972 4.423732 ACAACTTGATGCAACAACAACTC 58.576 39.130 5.14 0.00 0.00 3.01
689 3973 4.454728 ACAACTTGATGCAACAACAACT 57.545 36.364 5.14 0.00 0.00 3.16
766 4059 1.081242 GCTTCGCACACCACATTGG 60.081 57.895 0.00 0.00 45.02 3.16
779 4072 0.461961 TTGGGTTTGGGTTTGCTTCG 59.538 50.000 0.00 0.00 0.00 3.79
920 4213 3.068165 GGTTGTTGGAACTTGGAAGGAAG 59.932 47.826 0.00 0.00 0.00 3.46
921 4214 3.028130 GGTTGTTGGAACTTGGAAGGAA 58.972 45.455 0.00 0.00 0.00 3.36
922 4215 2.024846 TGGTTGTTGGAACTTGGAAGGA 60.025 45.455 0.00 0.00 0.00 3.36
923 4216 2.383855 TGGTTGTTGGAACTTGGAAGG 58.616 47.619 0.00 0.00 0.00 3.46
924 4217 3.891366 AGATGGTTGTTGGAACTTGGAAG 59.109 43.478 0.00 0.00 0.00 3.46
925 4218 3.888930 GAGATGGTTGTTGGAACTTGGAA 59.111 43.478 0.00 0.00 0.00 3.53
926 4219 3.486383 GAGATGGTTGTTGGAACTTGGA 58.514 45.455 0.00 0.00 0.00 3.53
927 4220 2.558359 GGAGATGGTTGTTGGAACTTGG 59.442 50.000 0.00 0.00 0.00 3.61
928 4221 2.558359 GGGAGATGGTTGTTGGAACTTG 59.442 50.000 0.00 0.00 0.00 3.16
929 4222 2.447047 AGGGAGATGGTTGTTGGAACTT 59.553 45.455 0.00 0.00 0.00 2.66
930 4223 2.040412 GAGGGAGATGGTTGTTGGAACT 59.960 50.000 0.00 0.00 0.00 3.01
931 4224 2.224769 TGAGGGAGATGGTTGTTGGAAC 60.225 50.000 0.00 0.00 0.00 3.62
932 4225 2.061848 TGAGGGAGATGGTTGTTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
933 4226 1.741028 TGAGGGAGATGGTTGTTGGA 58.259 50.000 0.00 0.00 0.00 3.53
1038 4336 4.538283 AGCCAGACGTCGCGATCG 62.538 66.667 23.00 23.00 0.00 3.69
1086 4384 4.988716 ACCTGGGAGCCGACGACA 62.989 66.667 0.00 0.00 0.00 4.35
1088 4386 2.975265 TAGACCTGGGAGCCGACGA 61.975 63.158 0.00 0.00 0.00 4.20
1166 4738 3.322466 CGGTGCAGGGGAAGAGGT 61.322 66.667 0.00 0.00 0.00 3.85
1548 5138 1.736645 GACGAGCAGCTTGGCGTTA 60.737 57.895 14.59 0.00 37.07 3.18
1957 5564 3.753797 CAGCAGAGATGAATCATGGATGG 59.246 47.826 0.00 0.00 0.00 3.51
1965 5572 4.084118 GGATTAACGCAGCAGAGATGAATC 60.084 45.833 0.00 0.00 0.00 2.52
1966 5573 3.812053 GGATTAACGCAGCAGAGATGAAT 59.188 43.478 0.00 0.00 0.00 2.57
1967 5574 3.198068 GGATTAACGCAGCAGAGATGAA 58.802 45.455 0.00 0.00 0.00 2.57
1970 5577 2.988010 TGGATTAACGCAGCAGAGAT 57.012 45.000 0.00 0.00 0.00 2.75
1971 5578 2.432146 AGATGGATTAACGCAGCAGAGA 59.568 45.455 0.00 0.00 0.00 3.10
1972 5579 2.799412 GAGATGGATTAACGCAGCAGAG 59.201 50.000 0.00 0.00 0.00 3.35
1973 5580 2.168313 TGAGATGGATTAACGCAGCAGA 59.832 45.455 0.00 0.00 0.00 4.26
1974 5581 2.554142 TGAGATGGATTAACGCAGCAG 58.446 47.619 0.00 0.00 0.00 4.24
1975 5582 2.689553 TGAGATGGATTAACGCAGCA 57.310 45.000 0.00 0.00 0.00 4.41
1976 5583 3.397482 AGATGAGATGGATTAACGCAGC 58.603 45.455 0.00 0.00 0.00 5.25
1979 5586 4.531332 GCAAAGATGAGATGGATTAACGC 58.469 43.478 0.00 0.00 0.00 4.84
1980 5587 4.507756 TCGCAAAGATGAGATGGATTAACG 59.492 41.667 0.00 0.00 29.81 3.18
1993 5600 5.327091 CCTTCAACAGTTATCGCAAAGATG 58.673 41.667 0.00 0.00 40.40 2.90
1997 5604 2.095969 CGCCTTCAACAGTTATCGCAAA 60.096 45.455 0.00 0.00 0.00 3.68
2007 5620 0.236711 CAGACTTGCGCCTTCAACAG 59.763 55.000 4.18 0.00 0.00 3.16
2016 5629 3.615614 GATCAATCAATCAGACTTGCGC 58.384 45.455 0.00 0.00 0.00 6.09
2018 5631 5.612059 CGATCGATCAATCAATCAGACTTGC 60.612 44.000 24.40 0.00 0.00 4.01
2054 5667 4.211125 TGCCAATACTGAACCAAACAGAA 58.789 39.130 0.00 0.00 38.55 3.02
2118 5731 9.613428 TGTCCAATATTACTTTCCACTATCTTG 57.387 33.333 0.00 0.00 0.00 3.02
2217 5832 5.013079 ACTGAACCAAACATAGATGGACTCA 59.987 40.000 0.00 0.95 39.12 3.41
2228 5843 5.743636 AATGGCATTACTGAACCAAACAT 57.256 34.783 11.81 0.00 35.41 2.71
2276 5899 2.655090 TCAACCAAACATGCAGAGGA 57.345 45.000 0.00 0.00 0.00 3.71
2277 5900 3.581755 CAATCAACCAAACATGCAGAGG 58.418 45.455 0.00 0.00 0.00 3.69
2380 6004 2.568546 TGTCCCTCCCTCATACACAT 57.431 50.000 0.00 0.00 0.00 3.21
2381 6005 2.187958 CTTGTCCCTCCCTCATACACA 58.812 52.381 0.00 0.00 0.00 3.72
2382 6006 1.134371 GCTTGTCCCTCCCTCATACAC 60.134 57.143 0.00 0.00 0.00 2.90
2383 6007 1.204146 GCTTGTCCCTCCCTCATACA 58.796 55.000 0.00 0.00 0.00 2.29
2384 6008 1.204146 TGCTTGTCCCTCCCTCATAC 58.796 55.000 0.00 0.00 0.00 2.39
2385 6009 1.965414 TTGCTTGTCCCTCCCTCATA 58.035 50.000 0.00 0.00 0.00 2.15
2467 6123 7.298122 ACTATTAAACAATCGTTGACAGCAAG 58.702 34.615 5.01 0.00 34.86 4.01
2510 6166 1.493022 AGAGCAACCACTACCAAACCA 59.507 47.619 0.00 0.00 0.00 3.67
2601 6281 4.748892 TCGAGTTCATCTCTGATTGTTCC 58.251 43.478 0.00 0.00 40.75 3.62
2602 6282 6.038985 TGATCGAGTTCATCTCTGATTGTTC 58.961 40.000 0.00 0.00 40.75 3.18
2603 6283 5.970592 TGATCGAGTTCATCTCTGATTGTT 58.029 37.500 0.00 0.00 40.75 2.83
2604 6284 5.588958 TGATCGAGTTCATCTCTGATTGT 57.411 39.130 0.00 0.00 40.75 2.71
2605 6285 4.445052 GCTGATCGAGTTCATCTCTGATTG 59.555 45.833 0.00 0.00 40.75 2.67
2606 6286 4.099113 TGCTGATCGAGTTCATCTCTGATT 59.901 41.667 0.00 0.00 40.75 2.57
2607 6287 3.635836 TGCTGATCGAGTTCATCTCTGAT 59.364 43.478 0.00 0.00 40.75 2.90
2608 6288 3.019564 TGCTGATCGAGTTCATCTCTGA 58.980 45.455 0.00 0.00 40.75 3.27
2609 6289 3.181488 ACTGCTGATCGAGTTCATCTCTG 60.181 47.826 0.00 0.00 40.75 3.35
2610 6290 3.023119 ACTGCTGATCGAGTTCATCTCT 58.977 45.455 0.00 0.00 40.75 3.10
2611 6291 3.181492 TGACTGCTGATCGAGTTCATCTC 60.181 47.826 0.00 0.00 39.62 2.75
2612 6292 2.757314 TGACTGCTGATCGAGTTCATCT 59.243 45.455 0.00 0.00 0.00 2.90
2613 6293 3.114809 CTGACTGCTGATCGAGTTCATC 58.885 50.000 0.00 0.00 0.00 2.92
2614 6294 2.495270 ACTGACTGCTGATCGAGTTCAT 59.505 45.455 0.00 0.00 0.00 2.57
2615 6295 1.889170 ACTGACTGCTGATCGAGTTCA 59.111 47.619 0.00 0.00 0.00 3.18
2616 6296 2.645730 ACTGACTGCTGATCGAGTTC 57.354 50.000 0.00 0.00 0.00 3.01
2617 6297 3.393089 AAACTGACTGCTGATCGAGTT 57.607 42.857 0.00 0.00 0.00 3.01
2618 6298 3.393089 AAAACTGACTGCTGATCGAGT 57.607 42.857 0.00 0.00 0.00 4.18
2619 6299 6.414408 AATTAAAACTGACTGCTGATCGAG 57.586 37.500 0.00 0.00 0.00 4.04
2620 6300 6.348458 CCAAATTAAAACTGACTGCTGATCGA 60.348 38.462 0.00 0.00 0.00 3.59
2621 6301 5.796935 CCAAATTAAAACTGACTGCTGATCG 59.203 40.000 0.00 0.00 0.00 3.69
2622 6302 6.913170 TCCAAATTAAAACTGACTGCTGATC 58.087 36.000 0.00 0.00 0.00 2.92
2623 6303 6.899393 TCCAAATTAAAACTGACTGCTGAT 57.101 33.333 0.00 0.00 0.00 2.90
2624 6304 6.707440 TTCCAAATTAAAACTGACTGCTGA 57.293 33.333 0.00 0.00 0.00 4.26
2634 6314 8.992073 AGAACATTGCAGATTCCAAATTAAAAC 58.008 29.630 3.75 0.00 0.00 2.43
2639 6319 7.499895 ACAAAAGAACATTGCAGATTCCAAATT 59.500 29.630 3.75 0.00 0.00 1.82
2650 6330 8.980610 CATCATTTAAGACAAAAGAACATTGCA 58.019 29.630 0.00 0.00 0.00 4.08
2707 6388 2.977914 TGCTTGCCACTCTCTTGTATC 58.022 47.619 0.00 0.00 0.00 2.24
2763 6444 8.589338 AGGTGGATTAGTAGCAATCTTATACTG 58.411 37.037 0.00 0.00 35.61 2.74
2805 6543 3.753272 CAGATTTGGAGATTCAACGGTGT 59.247 43.478 0.00 0.00 0.00 4.16
2819 6557 7.600065 ACAGACTCAATTTTGATCAGATTTGG 58.400 34.615 16.42 11.52 36.46 3.28
2843 6581 8.443937 GTTAACTGAACAATGGAATACAGAGAC 58.556 37.037 0.00 0.00 38.02 3.36
2854 6592 2.095263 CCGGCAGTTAACTGAACAATGG 60.095 50.000 34.43 21.31 46.59 3.16
2872 6610 1.064946 CACTCGCTAGCTTCTCCGG 59.935 63.158 13.93 0.00 0.00 5.14
2878 6616 1.950216 TGATCGATCACTCGCTAGCTT 59.050 47.619 23.99 0.00 44.65 3.74
2886 6624 3.820467 AGATGGACTCTGATCGATCACTC 59.180 47.826 23.99 16.80 36.56 3.51
2914 6652 6.944557 TGGCGATATATACTGAATCAAACG 57.055 37.500 0.00 0.00 0.00 3.60
2969 6707 0.747283 GCTTGCCACTCCTCATCCAG 60.747 60.000 0.00 0.00 0.00 3.86
3016 6754 7.670605 TGTAGTCCTGTATAAGTGGCTAAAT 57.329 36.000 0.00 0.00 0.00 1.40
3028 6766 7.554835 CAGTCTCTTCTACTTGTAGTCCTGTAT 59.445 40.741 7.56 0.00 0.00 2.29
3033 6771 4.142337 GCCAGTCTCTTCTACTTGTAGTCC 60.142 50.000 7.56 0.00 0.00 3.85
3060 6798 6.460537 GCAGCAATTATGAATGTCCAAGATCA 60.461 38.462 0.00 0.00 0.00 2.92
3061 6799 5.919141 GCAGCAATTATGAATGTCCAAGATC 59.081 40.000 0.00 0.00 0.00 2.75
3067 6805 7.380602 GTGAATTAGCAGCAATTATGAATGTCC 59.619 37.037 0.00 0.00 0.00 4.02
3095 6833 4.313282 ACGATGGATGCAACATCAGATAG 58.687 43.478 25.21 15.41 43.75 2.08
3096 6834 4.341366 ACGATGGATGCAACATCAGATA 57.659 40.909 25.21 0.00 43.75 1.98
3099 6837 2.679336 TCAACGATGGATGCAACATCAG 59.321 45.455 25.21 20.70 43.75 2.90
3129 6867 9.661563 AAGTTCGATATGTTTGGTTCAGTATTA 57.338 29.630 0.00 0.00 0.00 0.98
3147 6885 1.072331 AGGGTGCTCAACAAGTTCGAT 59.928 47.619 0.00 0.00 0.00 3.59
3149 6887 0.868406 GAGGGTGCTCAACAAGTTCG 59.132 55.000 0.00 0.00 0.00 3.95
3150 6888 1.239347 GGAGGGTGCTCAACAAGTTC 58.761 55.000 0.00 0.00 0.00 3.01
3160 6898 0.625683 AATCAGGATGGGAGGGTGCT 60.626 55.000 0.00 0.00 36.16 4.40
3162 6900 0.466922 GCAATCAGGATGGGAGGGTG 60.467 60.000 0.00 0.00 36.16 4.61
3166 6904 0.183014 AGCAGCAATCAGGATGGGAG 59.817 55.000 0.00 0.00 36.16 4.30
3187 6925 6.888088 TGAATCAAACATCAGATCAGGTGAAT 59.112 34.615 5.24 0.00 0.00 2.57
3206 6944 5.579564 TTTGCGGAATCAATGATGAATCA 57.420 34.783 0.00 0.00 37.24 2.57
3207 6945 6.362551 CAGATTTGCGGAATCAATGATGAATC 59.637 38.462 13.19 1.60 45.42 2.52
3215 6953 4.264253 TCTGTCAGATTTGCGGAATCAAT 58.736 39.130 13.19 0.00 45.42 2.57
3216 6954 3.673902 TCTGTCAGATTTGCGGAATCAA 58.326 40.909 13.19 1.23 45.42 2.57
3220 6958 3.673902 TCAATCTGTCAGATTTGCGGAA 58.326 40.909 22.89 4.85 41.90 4.30
3226 6964 5.486526 GACTGGACTCAATCTGTCAGATTT 58.513 41.667 22.89 11.03 41.90 2.17
3234 6972 1.821753 AGACCGACTGGACTCAATCTG 59.178 52.381 0.00 0.00 35.16 2.90
3235 6973 2.223803 AGACCGACTGGACTCAATCT 57.776 50.000 0.00 0.00 35.16 2.40
3245 6983 2.135933 GAACCAAACAGAGACCGACTG 58.864 52.381 0.00 0.00 40.68 3.51
3249 6987 2.240493 ACTGAACCAAACAGAGACCG 57.760 50.000 0.00 0.00 38.55 4.79
3280 7093 2.168496 AGCTGCTCCGACAGTTAACTA 58.832 47.619 8.04 0.00 39.96 2.24
3316 7129 2.354259 CAAACCTGCAGAGATGGACTC 58.646 52.381 17.39 0.00 45.22 3.36
3329 7142 6.932400 TGGCGATATATACTAAACCAAACCTG 59.068 38.462 0.00 0.00 0.00 4.00
3331 7144 7.625606 GCATGGCGATATATACTAAACCAAACC 60.626 40.741 0.00 0.00 0.00 3.27
3348 7169 2.747396 AAACAAACATGCATGGCGAT 57.253 40.000 29.41 10.49 0.00 4.58
3356 7177 7.967771 AGCAAAACAATTTAAACAAACATGC 57.032 28.000 0.00 0.00 0.00 4.06
3368 7189 7.725251 TCATTCAGAACCTAGCAAAACAATTT 58.275 30.769 0.00 0.00 0.00 1.82
3371 7192 5.241506 CCTCATTCAGAACCTAGCAAAACAA 59.758 40.000 0.00 0.00 0.00 2.83
3373 7194 5.003804 TCCTCATTCAGAACCTAGCAAAAC 58.996 41.667 0.00 0.00 0.00 2.43
3395 7216 0.523072 TCAAAGATTGCTTGCCGCTC 59.477 50.000 0.00 0.00 40.11 5.03
3412 7233 8.362464 ACATAGTTCCTGTCAATTACTAGTCA 57.638 34.615 0.00 0.00 0.00 3.41
3418 7239 7.335924 TGGCTAAACATAGTTCCTGTCAATTAC 59.664 37.037 0.00 0.00 0.00 1.89
3426 7247 5.003804 ACAAGTGGCTAAACATAGTTCCTG 58.996 41.667 0.00 0.00 0.00 3.86
3509 7330 4.384208 CCACCACCAAACCCACATTAAAAA 60.384 41.667 0.00 0.00 0.00 1.94
3510 7331 3.134804 CCACCACCAAACCCACATTAAAA 59.865 43.478 0.00 0.00 0.00 1.52
3511 7332 2.700897 CCACCACCAAACCCACATTAAA 59.299 45.455 0.00 0.00 0.00 1.52
3512 7333 2.320781 CCACCACCAAACCCACATTAA 58.679 47.619 0.00 0.00 0.00 1.40
3513 7334 2.002505 CCACCACCAAACCCACATTA 57.997 50.000 0.00 0.00 0.00 1.90
3514 7335 1.406860 GCCACCACCAAACCCACATT 61.407 55.000 0.00 0.00 0.00 2.71
3515 7336 1.836604 GCCACCACCAAACCCACAT 60.837 57.895 0.00 0.00 0.00 3.21
3516 7337 2.443016 GCCACCACCAAACCCACA 60.443 61.111 0.00 0.00 0.00 4.17
3517 7338 2.123468 AGCCACCACCAAACCCAC 60.123 61.111 0.00 0.00 0.00 4.61
3533 7354 1.579698 CCATGAATCCGACAGAGCAG 58.420 55.000 0.00 0.00 0.00 4.24
3535 7356 0.179062 AGCCATGAATCCGACAGAGC 60.179 55.000 0.00 0.00 0.00 4.09
3547 7368 3.262660 AGACAAGTGATCAGAAGCCATGA 59.737 43.478 0.00 0.00 0.00 3.07
3556 7377 5.954296 ATTGGAAACAGACAAGTGATCAG 57.046 39.130 0.00 0.00 44.54 2.90
3566 7387 3.686726 CAGCAGTCCTATTGGAAACAGAC 59.313 47.826 0.00 0.00 45.18 3.51
3590 7411 4.523083 AGAGTAGACTACCAGAAGCAGAG 58.477 47.826 9.06 0.00 0.00 3.35
3603 7424 7.458409 TGTTTGTTTCGGTATAGAGTAGACT 57.542 36.000 0.00 0.00 0.00 3.24
3617 7439 5.498159 TCGAGTTCATCTTTGTTTGTTTCG 58.502 37.500 0.00 0.00 0.00 3.46
3628 7450 2.492088 TGGTGTCGATCGAGTTCATCTT 59.508 45.455 20.09 0.00 0.00 2.40
3674 7496 6.709397 ACATGCATGAAGATAACTCATACAGG 59.291 38.462 32.75 0.00 0.00 4.00
3706 7529 3.882888 CCAGAACCTAGCAAAACACTTGA 59.117 43.478 0.00 0.00 0.00 3.02
3728 7551 1.133853 AGATTGCTTGCCCCTCTCATC 60.134 52.381 0.00 0.00 0.00 2.92
3854 7677 2.123897 AGCAACCGCCACCAAACT 60.124 55.556 0.00 0.00 39.83 2.66
3876 7699 4.166725 AGACAAAGGATCTAATGCCATCCA 59.833 41.667 0.94 0.00 41.16 3.41
3934 7757 7.484035 AGTTCATCTCTGTTTGTTTCAGTAC 57.516 36.000 0.00 0.00 34.86 2.73
4050 7877 5.250200 ACAACAGTATATCTCCCGCAAAAA 58.750 37.500 0.00 0.00 0.00 1.94
4051 7878 4.839121 ACAACAGTATATCTCCCGCAAAA 58.161 39.130 0.00 0.00 0.00 2.44
4052 7879 4.481368 ACAACAGTATATCTCCCGCAAA 57.519 40.909 0.00 0.00 0.00 3.68
4053 7880 4.481368 AACAACAGTATATCTCCCGCAA 57.519 40.909 0.00 0.00 0.00 4.85
4054 7881 5.601583 TTAACAACAGTATATCTCCCGCA 57.398 39.130 0.00 0.00 0.00 5.69
4055 7882 7.149973 TGTATTAACAACAGTATATCTCCCGC 58.850 38.462 0.00 0.00 30.91 6.13
4072 7899 6.620678 ACATGGCATGACTTGTTGTATTAAC 58.379 36.000 32.74 0.00 0.00 2.01
4218 8045 2.482142 GCTAGCTGCTCCGACAGTTAAT 60.482 50.000 4.91 0.00 39.96 1.40
4255 8082 1.197721 CCAAAACATGCAGAGACGACC 59.802 52.381 0.00 0.00 0.00 4.79
4259 8086 3.988379 TCAACCAAAACATGCAGAGAC 57.012 42.857 0.00 0.00 0.00 3.36
4296 8123 2.797074 TGAAACACACATGCATGGTG 57.203 45.000 30.51 30.51 41.95 4.17
4301 8128 3.865011 AACACTTGAAACACACATGCA 57.135 38.095 0.00 0.00 0.00 3.96
4311 8138 5.976458 AGATTTCCTGCAAAACACTTGAAA 58.024 33.333 0.00 0.00 0.00 2.69
4409 8259 7.951530 AAAAAGGCTGAACTATCAAACAATG 57.048 32.000 0.00 0.00 34.49 2.82
4441 8292 3.197265 GACAAAGCAACAGCCAACAAAT 58.803 40.909 0.00 0.00 0.00 2.32
4446 8297 0.749818 TCGGACAAAGCAACAGCCAA 60.750 50.000 0.00 0.00 0.00 4.52
4458 8309 3.136443 AGGGATCTAATGCAATCGGACAA 59.864 43.478 0.00 0.00 0.00 3.18
4461 8312 3.136443 ACAAGGGATCTAATGCAATCGGA 59.864 43.478 0.00 0.00 0.00 4.55
4507 8358 9.513906 TTTGTTTCAGTAAATACCATCAGATGA 57.486 29.630 12.41 0.00 0.00 2.92
4564 8415 8.635765 AGAAGTAACAAGCAGAATTCCAAATA 57.364 30.769 0.65 0.00 0.00 1.40
4720 8571 8.408043 ACAAAACTCTGAATTGGACATTCATA 57.592 30.769 0.00 0.00 37.40 2.15
4777 8647 7.255381 GGAATTGATGGAATGGACAACATAGAG 60.255 40.741 0.00 0.00 39.40 2.43
4803 8676 7.413877 GGTTTGAGCACTATCTGAAGAATCAAG 60.414 40.741 0.00 0.00 34.49 3.02
4810 8683 4.573900 ACTGGTTTGAGCACTATCTGAAG 58.426 43.478 0.00 0.00 0.00 3.02
4856 8729 7.550906 GGATCTTTGGAGCCAGTAATGATATAC 59.449 40.741 0.00 0.00 46.42 1.47
4858 8731 6.479884 GGATCTTTGGAGCCAGTAATGATAT 58.520 40.000 0.00 0.00 46.42 1.63
4859 8732 5.869579 GGATCTTTGGAGCCAGTAATGATA 58.130 41.667 0.00 0.00 46.42 2.15
4860 8733 4.723309 GGATCTTTGGAGCCAGTAATGAT 58.277 43.478 0.00 0.00 46.42 2.45
4861 8734 4.156455 GGATCTTTGGAGCCAGTAATGA 57.844 45.455 0.00 0.00 46.42 2.57
4881 8754 6.541641 AGATTTAAGCAGCAAGTCAGATAAGG 59.458 38.462 0.00 0.00 0.00 2.69
4894 8767 7.351223 CAAGCAAGTAGATAGATTTAAGCAGC 58.649 38.462 0.00 0.00 0.00 5.25
4913 8786 1.908619 TCCCAGTCTATCTGCAAGCAA 59.091 47.619 0.00 0.00 42.38 3.91
5082 8955 2.681064 GCAATCTGGCCCCAGCAA 60.681 61.111 9.48 0.00 43.31 3.91
5096 8969 1.612950 AGCATCACCATGTTTTCGCAA 59.387 42.857 0.00 0.00 31.86 4.85
5102 8975 0.892755 CCAGCAGCATCACCATGTTT 59.107 50.000 0.00 0.00 31.86 2.83
5184 9057 1.103803 GTGAGCACGGTAGGAGATGA 58.896 55.000 0.00 0.00 0.00 2.92
5378 9251 1.065564 GCCTGGCTCACTTCTTCAGAT 60.066 52.381 12.43 0.00 0.00 2.90
5433 9306 3.515502 AGTAGACTTGTGGCAGAAGCATA 59.484 43.478 22.83 13.39 44.61 3.14
5591 9470 5.355071 TCATGTAAAACCATCTCTGCATGTC 59.645 40.000 0.00 0.00 35.40 3.06
5665 9548 3.595190 AAGAAAACCTACACTTGGCCT 57.405 42.857 3.32 0.00 0.00 5.19
5681 9564 6.183361 ACAATTGGCTGGTAATGGAAAAAGAA 60.183 34.615 10.83 0.00 0.00 2.52
5684 9593 5.306678 AGACAATTGGCTGGTAATGGAAAAA 59.693 36.000 14.60 0.00 27.68 1.94
5685 9594 4.837860 AGACAATTGGCTGGTAATGGAAAA 59.162 37.500 14.60 0.00 27.68 2.29
5697 9606 3.316308 GTGAAACTGACAGACAATTGGCT 59.684 43.478 8.40 8.40 0.00 4.75
5698 9607 3.632189 GTGAAACTGACAGACAATTGGC 58.368 45.455 10.08 6.83 0.00 4.52
5713 9622 4.580580 AGTTTGTCTGAATGGGAGTGAAAC 59.419 41.667 0.00 0.00 0.00 2.78
5714 9623 4.580167 CAGTTTGTCTGAATGGGAGTGAAA 59.420 41.667 0.00 0.00 46.27 2.69
5715 9624 4.136796 CAGTTTGTCTGAATGGGAGTGAA 58.863 43.478 0.00 0.00 46.27 3.18
5716 9625 3.743521 CAGTTTGTCTGAATGGGAGTGA 58.256 45.455 0.00 0.00 46.27 3.41
5737 9646 9.934190 GCTGATTCAGAGATAATTTCTTTCTTC 57.066 33.333 17.87 0.00 33.74 2.87
5738 9647 9.458727 TGCTGATTCAGAGATAATTTCTTTCTT 57.541 29.630 17.87 0.00 33.74 2.52
5739 9648 9.458727 TTGCTGATTCAGAGATAATTTCTTTCT 57.541 29.630 17.87 0.00 33.74 2.52
5795 9704 9.995003 AGGCATAATAAAAATCAGAAAACAACA 57.005 25.926 0.00 0.00 0.00 3.33
5814 9727 9.634021 TGTTGATAAACCATAATGTAGGCATAA 57.366 29.630 0.00 0.00 34.39 1.90
5862 9775 8.105829 ACTGTATCAGAGGAAAATCAAACAGAT 58.894 33.333 0.00 0.00 35.27 2.90
5871 9784 3.197766 TGCGGACTGTATCAGAGGAAAAT 59.802 43.478 3.70 0.00 35.18 1.82
5905 9828 4.589216 TGCTGGTTTTCTCAAAATGGAG 57.411 40.909 0.00 0.00 36.21 3.86
5912 9835 4.097135 TGAAATCGTTGCTGGTTTTCTCAA 59.903 37.500 0.00 0.00 0.00 3.02
5914 9837 4.223320 TGAAATCGTTGCTGGTTTTCTC 57.777 40.909 0.00 0.00 0.00 2.87
5916 9839 5.254669 CAATGAAATCGTTGCTGGTTTTC 57.745 39.130 2.65 0.00 36.25 2.29
5939 9862 6.954944 TCAAGTAAGGAAACACGAAAGAATG 58.045 36.000 0.00 0.00 0.00 2.67
5941 9864 7.497909 AGAATCAAGTAAGGAAACACGAAAGAA 59.502 33.333 0.00 0.00 0.00 2.52
5944 9867 6.764085 TGAGAATCAAGTAAGGAAACACGAAA 59.236 34.615 0.00 0.00 45.97 3.46
5963 9886 2.885135 TGATGCAACCAGGTGAGAAT 57.115 45.000 0.00 0.00 0.00 2.40
5967 9890 2.557924 GTTGATTGATGCAACCAGGTGA 59.442 45.455 0.00 0.00 39.67 4.02
5969 9892 2.880443 AGTTGATTGATGCAACCAGGT 58.120 42.857 0.00 0.00 45.05 4.00
5975 9898 8.140628 TGCTTTTAACTTAGTTGATTGATGCAA 58.859 29.630 8.00 0.00 0.00 4.08
5981 9904 9.462174 TGATGTTGCTTTTAACTTAGTTGATTG 57.538 29.630 8.00 0.00 0.00 2.67
6023 9950 4.025979 GTCAAGACGACGTTGAAATTGACT 60.026 41.667 26.83 5.79 40.98 3.41
6036 9963 1.444553 CCTCCGCAGTCAAGACGAC 60.445 63.158 0.00 0.00 45.77 4.34
6037 9964 2.962569 CCTCCGCAGTCAAGACGA 59.037 61.111 0.00 0.00 36.20 4.20
6039 9966 2.435059 GGCCTCCGCAGTCAAGAC 60.435 66.667 0.00 0.00 36.38 3.01
6040 9967 4.069232 CGGCCTCCGCAGTCAAGA 62.069 66.667 0.00 0.00 41.17 3.02
6050 9977 3.394836 AAGGAGCACTCGGCCTCC 61.395 66.667 0.00 0.00 46.50 4.30
6051 9978 2.125350 CAAGGAGCACTCGGCCTC 60.125 66.667 0.00 0.00 46.50 4.70
6061 10561 0.106819 ATCAGGGTGATGCAAGGAGC 60.107 55.000 0.00 0.00 45.96 4.70
6062 10562 1.676746 CATCAGGGTGATGCAAGGAG 58.323 55.000 4.04 0.00 46.37 3.69
6074 10574 0.453390 GCTTTTCCGAAGCATCAGGG 59.547 55.000 5.93 0.00 42.56 4.45
6103 10603 2.460918 CAGACGTACCGGAATGCTAAG 58.539 52.381 9.46 0.00 0.00 2.18
6126 10626 2.879462 GCGCCGTGTAGTCCGAAG 60.879 66.667 0.00 0.00 0.00 3.79
6138 10638 4.388499 ACCAACCCTACTGCGCCG 62.388 66.667 4.18 0.00 0.00 6.46
6146 10646 4.338710 GGCACGGCACCAACCCTA 62.339 66.667 0.00 0.00 0.00 3.53
6165 10665 1.872952 TCCAACTCACAACAAGATGCG 59.127 47.619 0.00 0.00 0.00 4.73
6182 10682 2.270352 ATGCCGAAAAACAGAGTCCA 57.730 45.000 0.00 0.00 0.00 4.02
6189 10689 2.990066 AACCCAAATGCCGAAAAACA 57.010 40.000 0.00 0.00 0.00 2.83
6204 10704 2.009681 AGGAACCACCATCAAAACCC 57.990 50.000 0.00 0.00 42.04 4.11
6209 10709 3.909732 AGAAACAAGGAACCACCATCAA 58.090 40.909 0.00 0.00 42.04 2.57
6218 10718 5.532779 AGTTCATCTCCAAGAAACAAGGAAC 59.467 40.000 0.00 0.00 33.11 3.62
6226 10726 7.607991 GGATAAGACAAGTTCATCTCCAAGAAA 59.392 37.037 0.00 0.00 0.00 2.52
6260 10760 2.738480 CGGAGTTCCACCGGTCAA 59.262 61.111 2.59 0.00 45.65 3.18
6270 10770 1.067776 ACGATCCACTTCACGGAGTTC 60.068 52.381 0.00 0.00 41.61 3.01
6279 10779 2.631418 TGAAGACGACGATCCACTTC 57.369 50.000 0.00 8.77 37.87 3.01
6288 10788 1.995484 AGCACAATGATGAAGACGACG 59.005 47.619 0.00 0.00 0.00 5.12
6289 10789 2.475187 GCAGCACAATGATGAAGACGAC 60.475 50.000 0.00 0.00 35.45 4.34
6325 10825 0.249322 AAACAAAGCAGCAGCAGCAG 60.249 50.000 12.92 4.09 45.49 4.24
6328 10828 1.335810 TCTCAAACAAAGCAGCAGCAG 59.664 47.619 3.17 0.00 45.49 4.24
6331 10831 2.094854 GGGATCTCAAACAAAGCAGCAG 60.095 50.000 0.00 0.00 0.00 4.24
6332 10832 1.888512 GGGATCTCAAACAAAGCAGCA 59.111 47.619 0.00 0.00 0.00 4.41
6334 10834 4.015084 AGATGGGATCTCAAACAAAGCAG 58.985 43.478 0.00 0.00 33.42 4.24
6369 10878 4.004314 GGAGAAAAGAGAAGGTAGCCAAC 58.996 47.826 0.00 0.00 0.00 3.77
6373 10882 5.153950 TCAAGGAGAAAAGAGAAGGTAGC 57.846 43.478 0.00 0.00 0.00 3.58
6433 10961 3.605749 TTCTCTTTGGCGGCCCGAG 62.606 63.158 17.97 18.28 0.00 4.63
6435 10963 3.127533 CTTCTCTTTGGCGGCCCG 61.128 66.667 17.97 0.00 0.00 6.13
6442 10970 2.889678 AGCTGCCTTTTCTTCTCTTTGG 59.110 45.455 0.00 0.00 0.00 3.28
6445 10973 3.243670 GCAAAGCTGCCTTTTCTTCTCTT 60.244 43.478 0.00 0.00 43.26 2.85
6482 11010 3.939066 ACGACTACATAGGCTGCTTTTT 58.061 40.909 0.00 0.00 0.00 1.94
6483 11011 3.611766 ACGACTACATAGGCTGCTTTT 57.388 42.857 0.00 0.00 0.00 2.27
6484 11012 3.952323 TCTACGACTACATAGGCTGCTTT 59.048 43.478 0.00 0.00 0.00 3.51
6485 11013 3.552875 TCTACGACTACATAGGCTGCTT 58.447 45.455 0.00 0.00 0.00 3.91
6486 11014 3.142951 CTCTACGACTACATAGGCTGCT 58.857 50.000 0.00 0.00 0.00 4.24
6487 11015 3.139850 TCTCTACGACTACATAGGCTGC 58.860 50.000 0.00 0.00 0.00 5.25
6488 11016 3.749088 CCTCTCTACGACTACATAGGCTG 59.251 52.174 0.00 0.00 0.00 4.85
6489 11017 3.244630 CCCTCTCTACGACTACATAGGCT 60.245 52.174 0.00 0.00 0.00 4.58
6490 11018 3.075884 CCCTCTCTACGACTACATAGGC 58.924 54.545 0.00 0.00 0.00 3.93
6491 11019 3.075884 GCCCTCTCTACGACTACATAGG 58.924 54.545 0.00 0.00 0.00 2.57
6492 11020 3.741249 TGCCCTCTCTACGACTACATAG 58.259 50.000 0.00 0.00 0.00 2.23
6493 11021 3.851458 TGCCCTCTCTACGACTACATA 57.149 47.619 0.00 0.00 0.00 2.29
6494 11022 2.730934 TGCCCTCTCTACGACTACAT 57.269 50.000 0.00 0.00 0.00 2.29
6495 11023 2.298610 CATGCCCTCTCTACGACTACA 58.701 52.381 0.00 0.00 0.00 2.74
6496 11024 1.001158 GCATGCCCTCTCTACGACTAC 60.001 57.143 6.36 0.00 0.00 2.73
6497 11025 1.319541 GCATGCCCTCTCTACGACTA 58.680 55.000 6.36 0.00 0.00 2.59
6498 11026 1.729470 CGCATGCCCTCTCTACGACT 61.729 60.000 13.15 0.00 0.00 4.18
6499 11027 1.299468 CGCATGCCCTCTCTACGAC 60.299 63.158 13.15 0.00 0.00 4.34
6500 11028 1.753078 ACGCATGCCCTCTCTACGA 60.753 57.895 13.15 0.00 0.00 3.43
6501 11029 1.589993 CACGCATGCCCTCTCTACG 60.590 63.158 13.15 0.00 0.00 3.51
6502 11030 1.884926 GCACGCATGCCCTCTCTAC 60.885 63.158 13.15 0.00 46.97 2.59
6503 11031 2.501128 GCACGCATGCCCTCTCTA 59.499 61.111 13.15 0.00 46.97 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.