Multiple sequence alignment - TraesCS2A01G566800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G566800 chr2A 100.000 2300 0 0 1 2300 765827525 765825226 0.000000e+00 4248.0
1 TraesCS2A01G566800 chr2A 89.341 516 37 9 1030 1535 714062147 714062654 1.160000e-177 632.0
2 TraesCS2A01G566800 chr2A 87.548 522 48 9 1030 1542 118394717 118394204 2.550000e-164 588.0
3 TraesCS2A01G566800 chr2A 87.597 516 51 6 1032 1535 543178021 543177507 9.160000e-164 586.0
4 TraesCS2A01G566800 chr2A 96.347 219 5 2 1998 2213 101010084 101010302 7.810000e-95 357.0
5 TraesCS2A01G566800 chr2A 96.729 214 7 0 2000 2213 738267674 738267887 7.810000e-95 357.0
6 TraesCS2A01G566800 chr2A 88.660 291 32 1 231 520 653080877 653080587 1.010000e-93 353.0
7 TraesCS2A01G566800 chr2A 93.644 236 13 1 4 237 653081147 653080912 3.640000e-93 351.0
8 TraesCS2A01G566800 chr1A 92.070 744 59 0 271 1014 185850568 185849825 0.000000e+00 1048.0
9 TraesCS2A01G566800 chr1A 86.782 522 50 8 1030 1544 483024073 483024582 4.290000e-157 564.0
10 TraesCS2A01G566800 chr1A 86.502 526 50 11 1030 1544 559781578 559781063 2.000000e-155 558.0
11 TraesCS2A01G566800 chr1A 97.222 216 6 0 1998 2213 589670740 589670955 1.300000e-97 366.0
12 TraesCS2A01G566800 chr1A 94.634 205 8 2 4 207 185854456 185854254 4.770000e-82 315.0
13 TraesCS2A01G566800 chr1A 97.826 92 2 0 2209 2300 557161475 557161566 2.370000e-35 159.0
14 TraesCS2A01G566800 chr7D 91.170 453 35 3 570 1021 245282073 245282521 5.430000e-171 610.0
15 TraesCS2A01G566800 chr7D 92.059 340 21 4 683 1021 245281527 245281861 7.440000e-130 473.0
16 TraesCS2A01G566800 chr7D 95.763 118 5 0 570 687 245261595 245261712 8.390000e-45 191.0
17 TraesCS2A01G566800 chrUn 88.469 503 43 6 1043 1539 122241759 122242252 5.470000e-166 593.0
18 TraesCS2A01G566800 chr3A 87.645 518 51 6 1030 1540 658326035 658326546 7.080000e-165 590.0
19 TraesCS2A01G566800 chr3A 96.789 218 5 1 1998 2213 63036199 63035982 1.680000e-96 363.0
20 TraesCS2A01G566800 chr3A 96.729 214 7 0 2000 2213 38419797 38419584 7.810000e-95 357.0
21 TraesCS2A01G566800 chr3A 95.434 219 10 0 1995 2213 81661997 81661779 1.310000e-92 350.0
22 TraesCS2A01G566800 chr3A 98.876 89 1 0 2212 2300 38417634 38417546 2.370000e-35 159.0
23 TraesCS2A01G566800 chr3A 97.826 92 2 0 2209 2300 634128769 634128860 2.370000e-35 159.0
24 TraesCS2A01G566800 chr4A 86.817 531 53 8 1030 1544 576049394 576049923 5.510000e-161 577.0
25 TraesCS2A01G566800 chr6A 86.667 525 51 11 1030 1544 615475942 615476457 4.290000e-157 564.0
26 TraesCS2A01G566800 chr6A 98.876 89 1 0 2212 2300 50059914 50059826 2.370000e-35 159.0
27 TraesCS2A01G566800 chr6A 97.826 92 2 0 2209 2300 595585021 595585112 2.370000e-35 159.0
28 TraesCS2A01G566800 chr6A 97.826 92 2 0 2209 2300 601152434 601152525 2.370000e-35 159.0
29 TraesCS2A01G566800 chr5D 80.897 513 65 15 1048 1542 36560048 36560545 7.760000e-100 374.0
30 TraesCS2A01G566800 chr7B 80.464 517 71 18 1048 1546 720342400 720341896 3.610000e-98 368.0
31 TraesCS2A01G566800 chr2D 94.915 236 9 2 1529 1764 640364327 640364095 1.300000e-97 366.0
32 TraesCS2A01G566800 chr2D 88.382 241 20 1 1761 2001 640364063 640363831 1.350000e-72 283.0
33 TraesCS2A01G566800 chr7A 96.729 214 7 0 2000 2213 669860125 669859912 7.810000e-95 357.0
34 TraesCS2A01G566800 chr7A 97.826 92 2 0 2209 2300 515740954 515741045 2.370000e-35 159.0
35 TraesCS2A01G566800 chr7A 98.876 89 1 0 2212 2300 669857970 669857882 2.370000e-35 159.0
36 TraesCS2A01G566800 chr2B 94.783 230 9 2 1529 1758 801142135 801142361 2.810000e-94 355.0
37 TraesCS2A01G566800 chr2B 95.872 218 9 0 1541 1758 801073715 801073932 1.010000e-93 353.0
38 TraesCS2A01G566800 chr2B 89.669 242 16 2 1761 2001 801074092 801074325 1.340000e-77 300.0
39 TraesCS2A01G566800 chr2B 90.798 163 14 1 1840 2001 801142610 801142772 1.380000e-52 217.0
40 TraesCS2A01G566800 chr2B 100.000 32 0 0 1761 1792 801142556 801142587 2.470000e-05 60.2
41 TraesCS2A01G566800 chr5A 96.296 216 6 1 2000 2213 599375004 599374789 1.010000e-93 353.0
42 TraesCS2A01G566800 chr5A 95.067 223 10 1 1991 2213 132905944 132905723 1.310000e-92 350.0
43 TraesCS2A01G566800 chr5A 84.701 268 32 4 1284 1542 646635696 646635963 2.270000e-65 259.0
44 TraesCS2A01G566800 chr6B 98.851 87 1 0 2212 2298 310350314 310350228 3.060000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G566800 chr2A 765825226 765827525 2299 True 4248.000000 4248 100.000000 1 2300 1 chr2A.!!$R3 2299
1 TraesCS2A01G566800 chr2A 714062147 714062654 507 False 632.000000 632 89.341000 1030 1535 1 chr2A.!!$F2 505
2 TraesCS2A01G566800 chr2A 118394204 118394717 513 True 588.000000 588 87.548000 1030 1542 1 chr2A.!!$R1 512
3 TraesCS2A01G566800 chr2A 543177507 543178021 514 True 586.000000 586 87.597000 1032 1535 1 chr2A.!!$R2 503
4 TraesCS2A01G566800 chr2A 653080587 653081147 560 True 352.000000 353 91.152000 4 520 2 chr2A.!!$R4 516
5 TraesCS2A01G566800 chr1A 185849825 185854456 4631 True 681.500000 1048 93.352000 4 1014 2 chr1A.!!$R2 1010
6 TraesCS2A01G566800 chr1A 483024073 483024582 509 False 564.000000 564 86.782000 1030 1544 1 chr1A.!!$F1 514
7 TraesCS2A01G566800 chr1A 559781063 559781578 515 True 558.000000 558 86.502000 1030 1544 1 chr1A.!!$R1 514
8 TraesCS2A01G566800 chr7D 245281527 245282521 994 False 541.500000 610 91.614500 570 1021 2 chr7D.!!$F2 451
9 TraesCS2A01G566800 chr3A 658326035 658326546 511 False 590.000000 590 87.645000 1030 1540 1 chr3A.!!$F2 510
10 TraesCS2A01G566800 chr3A 38417546 38419797 2251 True 258.000000 357 97.802500 2000 2300 2 chr3A.!!$R3 300
11 TraesCS2A01G566800 chr4A 576049394 576049923 529 False 577.000000 577 86.817000 1030 1544 1 chr4A.!!$F1 514
12 TraesCS2A01G566800 chr6A 615475942 615476457 515 False 564.000000 564 86.667000 1030 1544 1 chr6A.!!$F3 514
13 TraesCS2A01G566800 chr7B 720341896 720342400 504 True 368.000000 368 80.464000 1048 1546 1 chr7B.!!$R1 498
14 TraesCS2A01G566800 chr7A 669857882 669860125 2243 True 258.000000 357 97.802500 2000 2300 2 chr7A.!!$R1 300
15 TraesCS2A01G566800 chr2B 801073715 801074325 610 False 326.500000 353 92.770500 1541 2001 2 chr2B.!!$F1 460
16 TraesCS2A01G566800 chr2B 801142135 801142772 637 False 210.733333 355 95.193667 1529 2001 3 chr2B.!!$F2 472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 2632 0.249238 AGATCGAAGCATGCGGAGTC 60.249 55.0 13.01 8.39 38.09 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 4423 0.732571 CAGGCGGCGATTTTACATGT 59.267 50.0 12.98 2.69 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.705727 CCGGTAACACAATCGACGC 59.294 57.895 0.00 0.00 0.00 5.19
151 154 1.942657 GCAATTCTAGGCGCATGAAGA 59.057 47.619 10.83 0.00 0.00 2.87
228 2358 5.916883 GCATCCTGATTAAAATCCATCAACG 59.083 40.000 0.41 0.00 34.50 4.10
237 2367 7.843490 TTAAAATCCATCAACGTCCTTCTAG 57.157 36.000 0.00 0.00 0.00 2.43
238 2368 5.422214 AAATCCATCAACGTCCTTCTAGT 57.578 39.130 0.00 0.00 0.00 2.57
244 2415 1.343465 CAACGTCCTTCTAGTGGGTGT 59.657 52.381 0.00 2.32 0.00 4.16
280 2451 0.652592 GGCGATCATTGACTGAACGG 59.347 55.000 4.81 0.00 46.70 4.44
281 2452 0.652592 GCGATCATTGACTGAACGGG 59.347 55.000 4.81 0.00 46.70 5.28
282 2453 0.652592 CGATCATTGACTGAACGGGC 59.347 55.000 0.00 0.00 43.96 6.13
283 2454 1.737838 GATCATTGACTGAACGGGCA 58.262 50.000 0.00 0.00 37.44 5.36
284 2455 2.083774 GATCATTGACTGAACGGGCAA 58.916 47.619 4.32 4.32 37.44 4.52
285 2456 1.974265 TCATTGACTGAACGGGCAAA 58.026 45.000 6.00 0.00 0.00 3.68
286 2457 1.879380 TCATTGACTGAACGGGCAAAG 59.121 47.619 6.00 2.23 0.00 2.77
287 2458 1.879380 CATTGACTGAACGGGCAAAGA 59.121 47.619 6.00 0.00 0.00 2.52
288 2459 1.305201 TTGACTGAACGGGCAAAGAC 58.695 50.000 0.00 0.00 0.00 3.01
290 2461 0.586802 GACTGAACGGGCAAAGACAC 59.413 55.000 0.00 0.00 0.00 3.67
291 2462 1.157870 ACTGAACGGGCAAAGACACG 61.158 55.000 0.00 0.00 0.00 4.49
294 2465 0.509929 GAACGGGCAAAGACACGTAC 59.490 55.000 0.00 0.00 38.79 3.67
296 2467 1.301087 CGGGCAAAGACACGTACCA 60.301 57.895 0.00 0.00 0.00 3.25
297 2468 1.562575 CGGGCAAAGACACGTACCAC 61.563 60.000 0.00 0.00 0.00 4.16
298 2469 0.533308 GGGCAAAGACACGTACCACA 60.533 55.000 0.00 0.00 0.00 4.17
299 2470 0.865769 GGCAAAGACACGTACCACAG 59.134 55.000 0.00 0.00 0.00 3.66
301 2472 1.865865 CAAAGACACGTACCACAGCT 58.134 50.000 0.00 0.00 0.00 4.24
303 2474 0.317479 AAGACACGTACCACAGCTCC 59.683 55.000 0.00 0.00 0.00 4.70
304 2475 1.443872 GACACGTACCACAGCTCCG 60.444 63.158 0.00 0.00 0.00 4.63
307 2478 2.181021 CGTACCACAGCTCCGGAC 59.819 66.667 0.00 0.00 0.00 4.79
308 2479 2.341101 CGTACCACAGCTCCGGACT 61.341 63.158 0.00 0.00 0.00 3.85
309 2480 1.511768 GTACCACAGCTCCGGACTC 59.488 63.158 0.00 0.00 0.00 3.36
310 2481 1.076014 TACCACAGCTCCGGACTCA 59.924 57.895 0.00 0.00 0.00 3.41
311 2482 0.541063 TACCACAGCTCCGGACTCAA 60.541 55.000 0.00 0.00 0.00 3.02
312 2483 1.374758 CCACAGCTCCGGACTCAAC 60.375 63.158 0.00 0.00 0.00 3.18
313 2484 1.734477 CACAGCTCCGGACTCAACG 60.734 63.158 0.00 0.00 0.00 4.10
315 2486 2.992114 AGCTCCGGACTCAACGCT 60.992 61.111 0.00 3.36 0.00 5.07
316 2487 1.677966 AGCTCCGGACTCAACGCTA 60.678 57.895 11.59 0.00 0.00 4.26
317 2488 1.038130 AGCTCCGGACTCAACGCTAT 61.038 55.000 11.59 0.00 0.00 2.97
318 2489 0.872021 GCTCCGGACTCAACGCTATG 60.872 60.000 0.00 0.00 0.00 2.23
319 2490 0.456221 CTCCGGACTCAACGCTATGT 59.544 55.000 0.00 0.00 0.00 2.29
320 2491 0.892755 TCCGGACTCAACGCTATGTT 59.107 50.000 0.00 0.00 43.09 2.71
327 2498 4.685447 AACGCTATGTTGCCGTCA 57.315 50.000 0.00 0.00 40.00 4.35
328 2499 2.921374 AACGCTATGTTGCCGTCAA 58.079 47.368 0.00 0.00 40.00 3.18
329 2500 0.796312 AACGCTATGTTGCCGTCAAG 59.204 50.000 0.00 0.00 40.00 3.02
331 2502 0.370273 CGCTATGTTGCCGTCAAGTC 59.630 55.000 0.00 0.00 31.93 3.01
333 2504 2.734175 CGCTATGTTGCCGTCAAGTCTA 60.734 50.000 0.00 0.00 31.93 2.59
334 2505 3.259064 GCTATGTTGCCGTCAAGTCTAA 58.741 45.455 0.00 0.00 31.93 2.10
337 2508 3.462483 TGTTGCCGTCAAGTCTAAGAA 57.538 42.857 0.00 0.00 31.93 2.52
338 2509 3.390135 TGTTGCCGTCAAGTCTAAGAAG 58.610 45.455 0.00 0.00 31.93 2.85
351 2522 4.025040 TCTAAGAAGACAGGTACCACGA 57.975 45.455 15.94 0.00 0.00 4.35
352 2523 3.755378 TCTAAGAAGACAGGTACCACGAC 59.245 47.826 15.94 5.19 0.00 4.34
354 2525 2.161030 AGAAGACAGGTACCACGACTC 58.839 52.381 15.94 4.98 0.00 3.36
355 2526 1.201880 GAAGACAGGTACCACGACTCC 59.798 57.143 15.94 0.00 0.00 3.85
356 2527 0.959372 AGACAGGTACCACGACTCCG 60.959 60.000 15.94 0.00 42.50 4.63
357 2528 1.930908 GACAGGTACCACGACTCCGG 61.931 65.000 15.94 0.00 40.78 5.14
359 2530 4.139234 GGTACCACGACTCCGGGC 62.139 72.222 7.15 0.00 38.01 6.13
360 2531 3.066814 GTACCACGACTCCGGGCT 61.067 66.667 0.00 0.00 38.01 5.19
364 2535 2.772691 CCACGACTCCGGGCTCTAC 61.773 68.421 0.00 0.00 38.01 2.59
365 2536 2.044555 CACGACTCCGGGCTCTACA 61.045 63.158 0.00 0.00 40.78 2.74
366 2537 2.045131 ACGACTCCGGGCTCTACAC 61.045 63.158 0.00 0.00 40.78 2.90
367 2538 2.772691 CGACTCCGGGCTCTACACC 61.773 68.421 0.00 0.00 0.00 4.16
368 2539 1.681327 GACTCCGGGCTCTACACCA 60.681 63.158 0.00 0.00 0.00 4.17
370 2541 1.330655 ACTCCGGGCTCTACACCATG 61.331 60.000 0.00 0.00 0.00 3.66
371 2542 1.305802 TCCGGGCTCTACACCATGT 60.306 57.895 0.00 0.00 0.00 3.21
372 2543 1.144057 CCGGGCTCTACACCATGTC 59.856 63.158 0.00 0.00 0.00 3.06
373 2544 1.226974 CGGGCTCTACACCATGTCG 60.227 63.158 0.00 0.00 0.00 4.35
374 2545 1.521681 GGGCTCTACACCATGTCGC 60.522 63.158 0.00 0.00 0.00 5.19
375 2546 1.521681 GGCTCTACACCATGTCGCC 60.522 63.158 0.00 0.00 33.45 5.54
376 2547 1.878522 GCTCTACACCATGTCGCCG 60.879 63.158 0.00 0.00 0.00 6.46
377 2548 1.878522 CTCTACACCATGTCGCCGC 60.879 63.158 0.00 0.00 0.00 6.53
378 2549 2.890474 CTACACCATGTCGCCGCC 60.890 66.667 0.00 0.00 0.00 6.13
379 2550 3.657448 CTACACCATGTCGCCGCCA 62.657 63.158 0.00 0.00 0.00 5.69
381 2552 3.803082 CACCATGTCGCCGCCAAG 61.803 66.667 0.00 0.00 0.00 3.61
382 2553 4.329545 ACCATGTCGCCGCCAAGT 62.330 61.111 0.00 0.00 0.00 3.16
384 2555 2.176546 CATGTCGCCGCCAAGTTG 59.823 61.111 0.00 0.00 0.00 3.16
385 2556 2.031919 ATGTCGCCGCCAAGTTGA 59.968 55.556 3.87 0.00 0.00 3.18
386 2557 1.377202 ATGTCGCCGCCAAGTTGAT 60.377 52.632 3.87 0.00 0.00 2.57
387 2558 1.369091 ATGTCGCCGCCAAGTTGATC 61.369 55.000 3.87 0.00 0.00 2.92
388 2559 2.813474 TCGCCGCCAAGTTGATCG 60.813 61.111 3.87 7.43 0.00 3.69
389 2560 2.813474 CGCCGCCAAGTTGATCGA 60.813 61.111 15.76 0.00 0.00 3.59
390 2561 2.173669 CGCCGCCAAGTTGATCGAT 61.174 57.895 15.76 0.00 0.00 3.59
391 2562 1.643832 GCCGCCAAGTTGATCGATC 59.356 57.895 18.72 18.72 0.00 3.69
392 2563 1.776034 GCCGCCAAGTTGATCGATCC 61.776 60.000 22.31 8.20 0.00 3.36
393 2564 0.461870 CCGCCAAGTTGATCGATCCA 60.462 55.000 22.31 9.17 0.00 3.41
394 2565 0.933097 CGCCAAGTTGATCGATCCAG 59.067 55.000 22.31 7.65 0.00 3.86
395 2566 1.740380 CGCCAAGTTGATCGATCCAGT 60.740 52.381 22.31 11.85 0.00 4.00
397 2568 2.866762 GCCAAGTTGATCGATCCAGTAC 59.133 50.000 22.31 14.19 0.00 2.73
398 2569 3.116300 CCAAGTTGATCGATCCAGTACG 58.884 50.000 22.31 9.26 0.00 3.67
400 2571 4.201980 CCAAGTTGATCGATCCAGTACGTA 60.202 45.833 22.31 0.00 0.00 3.57
401 2572 4.548991 AGTTGATCGATCCAGTACGTAC 57.451 45.455 22.31 18.10 0.00 3.67
402 2573 3.943381 AGTTGATCGATCCAGTACGTACA 59.057 43.478 26.55 7.59 0.00 2.90
403 2574 4.035324 AGTTGATCGATCCAGTACGTACAG 59.965 45.833 26.55 18.88 0.00 2.74
404 2575 3.800531 TGATCGATCCAGTACGTACAGA 58.199 45.455 26.55 21.62 0.00 3.41
405 2576 3.558829 TGATCGATCCAGTACGTACAGAC 59.441 47.826 26.55 14.99 0.00 3.51
406 2577 3.257469 TCGATCCAGTACGTACAGACT 57.743 47.619 26.55 5.63 0.00 3.24
407 2578 4.391405 TCGATCCAGTACGTACAGACTA 57.609 45.455 26.55 8.96 0.00 2.59
408 2579 4.366586 TCGATCCAGTACGTACAGACTAG 58.633 47.826 26.55 15.91 0.00 2.57
409 2580 3.493877 CGATCCAGTACGTACAGACTAGG 59.506 52.174 26.55 16.75 0.00 3.02
411 2582 4.134379 TCCAGTACGTACAGACTAGGAG 57.866 50.000 26.55 5.37 0.00 3.69
413 2584 4.408270 TCCAGTACGTACAGACTAGGAGAT 59.592 45.833 26.55 0.00 0.00 2.75
414 2585 4.751098 CCAGTACGTACAGACTAGGAGATC 59.249 50.000 26.55 0.00 0.00 2.75
415 2586 5.358090 CAGTACGTACAGACTAGGAGATCA 58.642 45.833 26.55 0.00 0.00 2.92
416 2587 5.816258 CAGTACGTACAGACTAGGAGATCAA 59.184 44.000 26.55 0.00 0.00 2.57
417 2588 5.816777 AGTACGTACAGACTAGGAGATCAAC 59.183 44.000 26.55 0.00 0.00 3.18
418 2589 3.946558 ACGTACAGACTAGGAGATCAACC 59.053 47.826 0.00 0.00 0.00 3.77
419 2590 3.002451 CGTACAGACTAGGAGATCAACCG 59.998 52.174 0.00 0.00 0.00 4.44
420 2591 3.088789 ACAGACTAGGAGATCAACCGT 57.911 47.619 0.00 0.00 0.00 4.83
421 2592 2.755655 ACAGACTAGGAGATCAACCGTG 59.244 50.000 0.00 0.00 0.00 4.94
422 2593 3.017442 CAGACTAGGAGATCAACCGTGA 58.983 50.000 0.00 0.00 38.41 4.35
423 2594 3.066064 CAGACTAGGAGATCAACCGTGAG 59.934 52.174 0.00 2.00 37.14 3.51
435 2606 2.962569 CGTGAGGTTCCTCTCGCA 59.037 61.111 23.49 2.80 42.58 5.10
436 2607 1.444553 CGTGAGGTTCCTCTCGCAC 60.445 63.158 23.49 12.35 42.58 5.34
437 2608 1.079750 GTGAGGTTCCTCTCGCACC 60.080 63.158 18.07 0.00 42.17 5.01
438 2609 1.533033 TGAGGTTCCTCTCGCACCA 60.533 57.895 18.07 0.00 36.61 4.17
439 2610 1.216710 GAGGTTCCTCTCGCACCAG 59.783 63.158 11.20 0.00 32.43 4.00
440 2611 2.435059 GGTTCCTCTCGCACCAGC 60.435 66.667 0.00 0.00 37.42 4.85
441 2612 2.435059 GTTCCTCTCGCACCAGCC 60.435 66.667 0.00 0.00 37.52 4.85
442 2613 2.922503 TTCCTCTCGCACCAGCCA 60.923 61.111 0.00 0.00 37.52 4.75
444 2615 3.385384 CCTCTCGCACCAGCCAGA 61.385 66.667 0.00 0.00 35.55 3.86
445 2616 2.729479 CCTCTCGCACCAGCCAGAT 61.729 63.158 0.00 0.00 37.37 2.90
446 2617 1.227205 CTCTCGCACCAGCCAGATC 60.227 63.158 0.00 0.00 37.37 2.75
447 2618 2.584418 CTCGCACCAGCCAGATCG 60.584 66.667 0.00 0.00 37.52 3.69
451 2622 2.467826 GCACCAGCCAGATCGAAGC 61.468 63.158 0.00 0.00 33.58 3.86
453 2624 0.463295 CACCAGCCAGATCGAAGCAT 60.463 55.000 7.29 0.00 0.00 3.79
454 2625 0.463295 ACCAGCCAGATCGAAGCATG 60.463 55.000 7.29 0.00 0.00 4.06
456 2627 1.886313 AGCCAGATCGAAGCATGCG 60.886 57.895 13.01 0.00 39.81 4.73
457 2628 2.890109 GCCAGATCGAAGCATGCGG 61.890 63.158 13.01 5.81 38.09 5.69
458 2629 1.227350 CCAGATCGAAGCATGCGGA 60.227 57.895 13.01 11.67 38.09 5.54
459 2630 1.220169 CCAGATCGAAGCATGCGGAG 61.220 60.000 13.01 7.52 38.09 4.63
461 2632 0.249238 AGATCGAAGCATGCGGAGTC 60.249 55.000 13.01 8.39 38.09 3.36
462 2633 1.218230 GATCGAAGCATGCGGAGTCC 61.218 60.000 13.01 0.00 38.09 3.85
463 2634 2.650813 ATCGAAGCATGCGGAGTCCC 62.651 60.000 13.01 0.00 38.09 4.46
465 2636 1.377202 GAAGCATGCGGAGTCCCAA 60.377 57.895 13.01 0.00 0.00 4.12
466 2637 1.648467 GAAGCATGCGGAGTCCCAAC 61.648 60.000 13.01 0.42 0.00 3.77
467 2638 2.359850 GCATGCGGAGTCCCAACA 60.360 61.111 0.00 0.00 0.00 3.33
468 2639 2.690778 GCATGCGGAGTCCCAACAC 61.691 63.158 0.00 0.00 0.00 3.32
469 2640 2.040544 CATGCGGAGTCCCAACACC 61.041 63.158 2.80 0.00 33.19 4.16
470 2641 2.224159 ATGCGGAGTCCCAACACCT 61.224 57.895 2.80 0.00 34.27 4.00
471 2642 2.358737 GCGGAGTCCCAACACCTG 60.359 66.667 2.80 0.00 34.27 4.00
472 2643 3.148084 CGGAGTCCCAACACCTGT 58.852 61.111 2.80 0.00 34.27 4.00
473 2644 1.823169 GCGGAGTCCCAACACCTGTA 61.823 60.000 2.80 0.00 34.27 2.74
474 2645 0.682852 CGGAGTCCCAACACCTGTAA 59.317 55.000 2.80 0.00 34.27 2.41
475 2646 1.278127 CGGAGTCCCAACACCTGTAAT 59.722 52.381 2.80 0.00 34.27 1.89
477 2648 2.572104 GGAGTCCCAACACCTGTAATCT 59.428 50.000 0.00 0.00 33.70 2.40
479 2650 4.254492 GAGTCCCAACACCTGTAATCTTC 58.746 47.826 0.00 0.00 0.00 2.87
480 2651 3.009143 AGTCCCAACACCTGTAATCTTCC 59.991 47.826 0.00 0.00 0.00 3.46
481 2652 2.307686 TCCCAACACCTGTAATCTTCCC 59.692 50.000 0.00 0.00 0.00 3.97
482 2653 2.356135 CCAACACCTGTAATCTTCCCG 58.644 52.381 0.00 0.00 0.00 5.14
483 2654 2.290071 CCAACACCTGTAATCTTCCCGT 60.290 50.000 0.00 0.00 0.00 5.28
484 2655 3.000727 CAACACCTGTAATCTTCCCGTC 58.999 50.000 0.00 0.00 0.00 4.79
486 2657 2.496470 ACACCTGTAATCTTCCCGTCTC 59.504 50.000 0.00 0.00 0.00 3.36
487 2658 2.496070 CACCTGTAATCTTCCCGTCTCA 59.504 50.000 0.00 0.00 0.00 3.27
488 2659 3.133003 CACCTGTAATCTTCCCGTCTCAT 59.867 47.826 0.00 0.00 0.00 2.90
489 2660 3.775316 ACCTGTAATCTTCCCGTCTCATT 59.225 43.478 0.00 0.00 0.00 2.57
490 2661 4.122776 CCTGTAATCTTCCCGTCTCATTG 58.877 47.826 0.00 0.00 0.00 2.82
492 2663 4.755411 TGTAATCTTCCCGTCTCATTGTC 58.245 43.478 0.00 0.00 0.00 3.18
493 2664 3.981071 AATCTTCCCGTCTCATTGTCA 57.019 42.857 0.00 0.00 0.00 3.58
494 2665 3.981071 ATCTTCCCGTCTCATTGTCAA 57.019 42.857 0.00 0.00 0.00 3.18
495 2666 3.040147 TCTTCCCGTCTCATTGTCAAC 57.960 47.619 0.00 0.00 0.00 3.18
497 2668 3.830178 TCTTCCCGTCTCATTGTCAACTA 59.170 43.478 0.00 0.00 0.00 2.24
499 2670 4.819105 TCCCGTCTCATTGTCAACTAAT 57.181 40.909 0.00 0.00 0.00 1.73
500 2671 4.755411 TCCCGTCTCATTGTCAACTAATC 58.245 43.478 0.00 0.00 0.00 1.75
502 2673 4.935205 CCCGTCTCATTGTCAACTAATCAA 59.065 41.667 0.00 0.00 0.00 2.57
504 2675 6.457392 CCCGTCTCATTGTCAACTAATCAATG 60.457 42.308 9.81 9.81 45.31 2.82
505 2676 6.092670 CCGTCTCATTGTCAACTAATCAATGT 59.907 38.462 13.98 0.00 44.68 2.71
506 2677 7.176075 CGTCTCATTGTCAACTAATCAATGTC 58.824 38.462 13.98 7.68 44.68 3.06
508 2679 7.959651 GTCTCATTGTCAACTAATCAATGTCAC 59.040 37.037 13.98 9.58 44.68 3.67
510 2681 8.339344 TCATTGTCAACTAATCAATGTCACAT 57.661 30.769 13.98 0.00 44.68 3.21
512 2683 7.509141 TTGTCAACTAATCAATGTCACATGT 57.491 32.000 0.00 0.00 0.00 3.21
513 2684 7.509141 TGTCAACTAATCAATGTCACATGTT 57.491 32.000 0.00 0.00 0.00 2.71
514 2685 7.584108 TGTCAACTAATCAATGTCACATGTTC 58.416 34.615 0.00 0.00 0.00 3.18
516 2687 7.747799 GTCAACTAATCAATGTCACATGTTCAG 59.252 37.037 0.00 0.00 0.00 3.02
518 2689 6.475504 ACTAATCAATGTCACATGTTCAGGA 58.524 36.000 0.00 1.96 0.00 3.86
519 2690 5.633830 AATCAATGTCACATGTTCAGGAC 57.366 39.130 0.00 0.81 0.00 3.85
520 2691 3.066380 TCAATGTCACATGTTCAGGACG 58.934 45.455 0.00 0.00 33.04 4.79
521 2692 3.066380 CAATGTCACATGTTCAGGACGA 58.934 45.455 0.00 0.00 33.04 4.20
522 2693 3.616956 ATGTCACATGTTCAGGACGAT 57.383 42.857 0.00 0.00 33.04 3.73
523 2694 2.959516 TGTCACATGTTCAGGACGATC 58.040 47.619 0.00 0.00 33.04 3.69
524 2695 2.298729 TGTCACATGTTCAGGACGATCA 59.701 45.455 0.00 0.00 33.04 2.92
525 2696 3.244044 TGTCACATGTTCAGGACGATCAA 60.244 43.478 0.00 0.00 33.04 2.57
526 2697 3.369147 GTCACATGTTCAGGACGATCAAG 59.631 47.826 0.00 0.00 0.00 3.02
527 2698 3.258123 TCACATGTTCAGGACGATCAAGA 59.742 43.478 0.00 0.00 0.00 3.02
528 2699 3.615937 CACATGTTCAGGACGATCAAGAG 59.384 47.826 0.00 0.00 0.00 2.85
530 2701 1.895798 TGTTCAGGACGATCAAGAGCT 59.104 47.619 0.00 0.00 0.00 4.09
531 2702 3.089284 TGTTCAGGACGATCAAGAGCTA 58.911 45.455 0.00 0.00 0.00 3.32
532 2703 3.119459 TGTTCAGGACGATCAAGAGCTAC 60.119 47.826 0.00 0.00 0.00 3.58
533 2704 2.723273 TCAGGACGATCAAGAGCTACA 58.277 47.619 0.00 0.00 0.00 2.74
534 2705 2.423892 TCAGGACGATCAAGAGCTACAC 59.576 50.000 0.00 0.00 0.00 2.90
535 2706 1.751924 AGGACGATCAAGAGCTACACC 59.248 52.381 0.00 0.00 0.00 4.16
536 2707 1.476891 GGACGATCAAGAGCTACACCA 59.523 52.381 0.00 0.00 0.00 4.17
537 2708 2.094182 GGACGATCAAGAGCTACACCAA 60.094 50.000 0.00 0.00 0.00 3.67
538 2709 2.924290 GACGATCAAGAGCTACACCAAC 59.076 50.000 0.00 0.00 0.00 3.77
539 2710 2.299013 ACGATCAAGAGCTACACCAACA 59.701 45.455 0.00 0.00 0.00 3.33
540 2711 3.244078 ACGATCAAGAGCTACACCAACAA 60.244 43.478 0.00 0.00 0.00 2.83
541 2712 3.123621 CGATCAAGAGCTACACCAACAAC 59.876 47.826 0.00 0.00 0.00 3.32
542 2713 3.552132 TCAAGAGCTACACCAACAACA 57.448 42.857 0.00 0.00 0.00 3.33
544 2715 3.118408 TCAAGAGCTACACCAACAACACT 60.118 43.478 0.00 0.00 0.00 3.55
560 2731 5.192927 ACAACACTTGTTCTCTCCATTCAA 58.807 37.500 0.00 0.00 42.22 2.69
561 2732 5.829924 ACAACACTTGTTCTCTCCATTCAAT 59.170 36.000 0.00 0.00 42.22 2.57
562 2733 6.998074 ACAACACTTGTTCTCTCCATTCAATA 59.002 34.615 0.00 0.00 42.22 1.90
563 2734 7.667219 ACAACACTTGTTCTCTCCATTCAATAT 59.333 33.333 0.00 0.00 42.22 1.28
566 2737 9.911788 ACACTTGTTCTCTCCATTCAATATATT 57.088 29.630 0.00 0.00 0.00 1.28
568 2739 8.844244 ACTTGTTCTCTCCATTCAATATATTGC 58.156 33.333 18.89 3.16 37.68 3.56
569 2740 8.985315 TTGTTCTCTCCATTCAATATATTGCT 57.015 30.769 18.89 7.41 37.68 3.91
587 2758 5.738619 TTGCTAAAAATTTCCCTTCCTCC 57.261 39.130 0.00 0.00 0.00 4.30
588 2759 4.093743 TGCTAAAAATTTCCCTTCCTCCC 58.906 43.478 0.00 0.00 0.00 4.30
590 2761 4.160439 GCTAAAAATTTCCCTTCCTCCCTG 59.840 45.833 0.00 0.00 0.00 4.45
591 2762 2.238084 AAATTTCCCTTCCTCCCTGC 57.762 50.000 0.00 0.00 0.00 4.85
592 2763 1.084018 AATTTCCCTTCCTCCCTGCA 58.916 50.000 0.00 0.00 0.00 4.41
595 2766 1.281925 TTCCCTTCCTCCCTGCATCC 61.282 60.000 0.00 0.00 0.00 3.51
596 2767 2.507944 CCTTCCTCCCTGCATCCG 59.492 66.667 0.00 0.00 0.00 4.18
597 2768 2.203126 CTTCCTCCCTGCATCCGC 60.203 66.667 0.00 0.00 39.24 5.54
617 2788 2.271497 CCTCCAGGCCAAGCTCAG 59.729 66.667 5.01 0.00 0.00 3.35
619 2790 1.221293 CTCCAGGCCAAGCTCAGAG 59.779 63.158 5.01 0.00 0.00 3.35
621 2792 2.350134 CAGGCCAAGCTCAGAGCA 59.650 61.111 24.64 0.00 45.56 4.26
622 2793 1.745864 CAGGCCAAGCTCAGAGCAG 60.746 63.158 24.64 15.54 45.56 4.24
623 2794 3.132801 GGCCAAGCTCAGAGCAGC 61.133 66.667 24.64 21.40 45.56 5.25
624 2795 3.132801 GCCAAGCTCAGAGCAGCC 61.133 66.667 24.64 2.59 45.56 4.85
625 2796 2.438075 CCAAGCTCAGAGCAGCCC 60.438 66.667 24.64 0.00 45.56 5.19
629 2800 4.828925 GCTCAGAGCAGCCCGACC 62.829 72.222 18.17 0.00 41.89 4.79
630 2801 4.504916 CTCAGAGCAGCCCGACCG 62.505 72.222 0.00 0.00 0.00 4.79
632 2803 4.069232 CAGAGCAGCCCGACCGAA 62.069 66.667 0.00 0.00 0.00 4.30
633 2804 3.077556 AGAGCAGCCCGACCGAAT 61.078 61.111 0.00 0.00 0.00 3.34
634 2805 2.586357 GAGCAGCCCGACCGAATC 60.586 66.667 0.00 0.00 0.00 2.52
698 2869 3.249189 GAGCACCTCCACCCCACA 61.249 66.667 0.00 0.00 0.00 4.17
725 2896 1.074752 CTTTCCTCTGCGTGCTCTTC 58.925 55.000 0.00 0.00 0.00 2.87
752 3243 3.165875 TCCCTTCGTCATCTCTCTGTTT 58.834 45.455 0.00 0.00 0.00 2.83
763 3255 2.630098 TCTCTCTGTTTGTCTCCCACAG 59.370 50.000 0.00 0.00 39.51 3.66
815 3307 2.125512 CTTCCCCGAAGACCAGCG 60.126 66.667 0.00 0.00 41.71 5.18
899 3391 4.660938 GAACCCCGCAAGCCCTGT 62.661 66.667 0.00 0.00 0.00 4.00
914 3406 4.082523 TGTAGCCCGTGCCTCTGC 62.083 66.667 0.00 0.00 38.69 4.26
943 3435 4.803426 CGCGGAGGCCTCTGTGTC 62.803 72.222 37.01 22.99 40.57 3.67
944 3436 4.459089 GCGGAGGCCTCTGTGTCC 62.459 72.222 36.38 20.04 38.23 4.02
1143 4032 2.097918 GACAGCGACGACGACGAT 59.902 61.111 22.94 14.51 42.66 3.73
1356 4259 9.329913 GCCGAACATGTTTAATATGAATATCAC 57.670 33.333 13.36 0.00 0.00 3.06
1407 4321 2.695359 ACTTCGCCGAATTCAGCTTTA 58.305 42.857 11.72 0.00 0.00 1.85
1625 4555 8.548877 TGGAAACTTATCAAGCTAAGGTAGAAT 58.451 33.333 0.00 0.00 33.79 2.40
1655 4585 3.251004 GCACTTTCACTTGTGTAAGGGAG 59.749 47.826 21.04 12.68 46.44 4.30
1656 4586 3.251004 CACTTTCACTTGTGTAAGGGAGC 59.749 47.826 19.15 0.00 46.44 4.70
1725 4655 4.035558 GCCATTCTCATGCATACGAAAAGA 59.964 41.667 12.21 0.00 0.00 2.52
1737 4667 5.063060 GCATACGAAAAGAAGACCGTGTATT 59.937 40.000 0.00 0.00 36.58 1.89
1758 4688 1.573108 TTCTCCTTCCCTGGCTAGTG 58.427 55.000 0.00 0.00 0.00 2.74
1759 4689 0.413832 TCTCCTTCCCTGGCTAGTGT 59.586 55.000 0.00 0.00 0.00 3.55
1800 4957 3.198635 TCACAGAGGAAAATGAGGCCTAG 59.801 47.826 4.42 0.00 30.70 3.02
1801 4958 3.054802 CACAGAGGAAAATGAGGCCTAGT 60.055 47.826 4.42 0.00 30.70 2.57
1802 4959 3.054802 ACAGAGGAAAATGAGGCCTAGTG 60.055 47.826 4.42 0.00 30.70 2.74
1803 4960 2.507471 AGAGGAAAATGAGGCCTAGTGG 59.493 50.000 4.42 0.00 30.70 4.00
1827 4984 6.262496 GGCCTACCACCTGAATTAATTAACTC 59.738 42.308 0.00 0.00 35.26 3.01
1831 4988 9.449719 CTACCACCTGAATTAATTAACTCAACT 57.550 33.333 10.31 0.00 0.00 3.16
1847 5004 1.946768 CAACTGAAAAGAACCCTGCGA 59.053 47.619 0.00 0.00 0.00 5.10
1859 5016 1.559682 ACCCTGCGAGTAAATGGTGAT 59.440 47.619 0.00 0.00 0.00 3.06
1862 5019 1.004610 CTGCGAGTAAATGGTGATGCG 60.005 52.381 0.00 0.00 0.00 4.73
1954 5112 6.091437 GCACCTGAATCTCAAGATTTTTCTG 58.909 40.000 6.70 3.03 44.14 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.959030 CTCCGATGGATTCACTGACCTA 59.041 50.000 0.00 0.00 0.00 3.08
12 13 3.246416 AGCCTACTACTCCGATGGATT 57.754 47.619 0.00 0.00 0.00 3.01
78 79 0.741326 TCCTCGATCCGCAGAGAAAG 59.259 55.000 0.00 0.00 36.65 2.62
228 2358 1.201880 GACGACACCCACTAGAAGGAC 59.798 57.143 9.39 1.45 0.00 3.85
237 2367 1.772063 GCAACAGTGACGACACCCAC 61.772 60.000 14.34 2.04 46.99 4.61
238 2368 1.522806 GCAACAGTGACGACACCCA 60.523 57.895 14.34 0.00 46.99 4.51
244 2415 2.354188 CGACCGCAACAGTGACGA 60.354 61.111 0.00 0.00 0.00 4.20
280 2451 0.865769 CTGTGGTACGTGTCTTTGCC 59.134 55.000 0.00 0.00 0.00 4.52
281 2452 0.234884 GCTGTGGTACGTGTCTTTGC 59.765 55.000 0.00 0.00 0.00 3.68
282 2453 1.792949 GAGCTGTGGTACGTGTCTTTG 59.207 52.381 0.00 0.00 0.00 2.77
283 2454 1.270147 GGAGCTGTGGTACGTGTCTTT 60.270 52.381 0.00 0.00 0.00 2.52
284 2455 0.317479 GGAGCTGTGGTACGTGTCTT 59.683 55.000 0.00 0.00 0.00 3.01
285 2456 1.863662 CGGAGCTGTGGTACGTGTCT 61.864 60.000 0.00 0.00 32.28 3.41
286 2457 1.443872 CGGAGCTGTGGTACGTGTC 60.444 63.158 0.00 0.00 32.28 3.67
287 2458 2.649034 CGGAGCTGTGGTACGTGT 59.351 61.111 0.00 0.00 32.28 4.49
288 2459 2.126071 CCGGAGCTGTGGTACGTG 60.126 66.667 0.00 0.00 35.42 4.49
290 2461 2.181021 GTCCGGAGCTGTGGTACG 59.819 66.667 3.06 0.00 37.10 3.67
291 2462 1.248785 TGAGTCCGGAGCTGTGGTAC 61.249 60.000 3.06 0.00 0.00 3.34
294 2465 1.374758 GTTGAGTCCGGAGCTGTGG 60.375 63.158 3.06 0.00 0.00 4.17
296 2467 2.651361 CGTTGAGTCCGGAGCTGT 59.349 61.111 3.06 0.00 0.00 4.40
297 2468 1.934220 TAGCGTTGAGTCCGGAGCTG 61.934 60.000 20.50 3.26 36.30 4.24
298 2469 1.038130 ATAGCGTTGAGTCCGGAGCT 61.038 55.000 16.71 16.71 38.57 4.09
299 2470 0.872021 CATAGCGTTGAGTCCGGAGC 60.872 60.000 3.06 3.03 0.00 4.70
301 2472 0.892755 AACATAGCGTTGAGTCCGGA 59.107 50.000 0.00 0.00 36.12 5.14
310 2481 0.796312 CTTGACGGCAACATAGCGTT 59.204 50.000 0.00 0.00 38.83 4.84
311 2482 0.320421 ACTTGACGGCAACATAGCGT 60.320 50.000 0.00 0.00 34.64 5.07
312 2483 0.370273 GACTTGACGGCAACATAGCG 59.630 55.000 0.00 0.00 34.64 4.26
313 2484 1.726853 AGACTTGACGGCAACATAGC 58.273 50.000 0.00 0.00 0.00 2.97
315 2486 4.794278 TCTTAGACTTGACGGCAACATA 57.206 40.909 0.00 0.00 0.00 2.29
316 2487 3.678056 TCTTAGACTTGACGGCAACAT 57.322 42.857 0.00 0.00 0.00 2.71
317 2488 3.069016 TCTTCTTAGACTTGACGGCAACA 59.931 43.478 0.00 0.00 0.00 3.33
318 2489 3.429207 GTCTTCTTAGACTTGACGGCAAC 59.571 47.826 0.00 0.00 45.99 4.17
319 2490 3.650139 GTCTTCTTAGACTTGACGGCAA 58.350 45.455 2.36 2.36 45.99 4.52
320 2491 3.299340 GTCTTCTTAGACTTGACGGCA 57.701 47.619 0.00 0.00 45.99 5.69
331 2502 3.757493 AGTCGTGGTACCTGTCTTCTTAG 59.243 47.826 14.36 0.00 0.00 2.18
333 2504 2.557490 GAGTCGTGGTACCTGTCTTCTT 59.443 50.000 14.36 0.00 0.00 2.52
334 2505 2.161030 GAGTCGTGGTACCTGTCTTCT 58.839 52.381 14.36 4.20 0.00 2.85
337 2508 0.959372 CGGAGTCGTGGTACCTGTCT 60.959 60.000 14.36 8.69 0.00 3.41
338 2509 1.505353 CGGAGTCGTGGTACCTGTC 59.495 63.158 14.36 3.77 0.00 3.51
340 2511 2.707849 CCCGGAGTCGTGGTACCTG 61.708 68.421 14.36 5.90 33.95 4.00
342 2513 4.139234 GCCCGGAGTCGTGGTACC 62.139 72.222 0.73 4.43 33.95 3.34
343 2514 3.061260 GAGCCCGGAGTCGTGGTAC 62.061 68.421 0.73 0.00 33.95 3.34
347 2518 2.044555 TGTAGAGCCCGGAGTCGTG 61.045 63.158 0.73 0.00 33.95 4.35
350 2521 1.043673 ATGGTGTAGAGCCCGGAGTC 61.044 60.000 0.73 0.00 0.00 3.36
351 2522 1.001760 ATGGTGTAGAGCCCGGAGT 59.998 57.895 0.73 0.00 0.00 3.85
352 2523 1.330655 ACATGGTGTAGAGCCCGGAG 61.331 60.000 0.73 0.00 0.00 4.63
354 2525 1.144057 GACATGGTGTAGAGCCCGG 59.856 63.158 0.00 0.00 0.00 5.73
355 2526 1.226974 CGACATGGTGTAGAGCCCG 60.227 63.158 0.00 0.00 0.00 6.13
356 2527 1.521681 GCGACATGGTGTAGAGCCC 60.522 63.158 0.00 0.00 0.00 5.19
357 2528 1.521681 GGCGACATGGTGTAGAGCC 60.522 63.158 0.00 7.58 37.96 4.70
359 2530 1.878522 GCGGCGACATGGTGTAGAG 60.879 63.158 12.98 0.00 0.00 2.43
360 2531 2.183300 GCGGCGACATGGTGTAGA 59.817 61.111 12.98 0.00 0.00 2.59
364 2535 3.803082 CTTGGCGGCGACATGGTG 61.803 66.667 19.81 3.40 0.00 4.17
365 2536 3.842925 AACTTGGCGGCGACATGGT 62.843 57.895 28.97 22.57 0.00 3.55
366 2537 3.055719 AACTTGGCGGCGACATGG 61.056 61.111 28.97 21.21 0.00 3.66
367 2538 1.647545 ATCAACTTGGCGGCGACATG 61.648 55.000 25.04 25.04 0.00 3.21
368 2539 1.369091 GATCAACTTGGCGGCGACAT 61.369 55.000 19.81 0.00 0.00 3.06
370 2541 2.785258 GATCAACTTGGCGGCGAC 59.215 61.111 12.98 9.31 0.00 5.19
371 2542 2.572095 ATCGATCAACTTGGCGGCGA 62.572 55.000 12.98 0.14 0.00 5.54
372 2543 2.094126 GATCGATCAACTTGGCGGCG 62.094 60.000 20.52 0.51 0.00 6.46
373 2544 1.643832 GATCGATCAACTTGGCGGC 59.356 57.895 20.52 0.00 0.00 6.53
374 2545 0.461870 TGGATCGATCAACTTGGCGG 60.462 55.000 25.93 0.00 0.00 6.13
375 2546 0.933097 CTGGATCGATCAACTTGGCG 59.067 55.000 25.93 0.00 0.00 5.69
376 2547 2.029838 ACTGGATCGATCAACTTGGC 57.970 50.000 25.93 8.06 0.00 4.52
377 2548 3.116300 CGTACTGGATCGATCAACTTGG 58.884 50.000 25.93 6.49 0.00 3.61
378 2549 3.770666 ACGTACTGGATCGATCAACTTG 58.229 45.455 25.93 13.15 0.00 3.16
379 2550 4.397103 TGTACGTACTGGATCGATCAACTT 59.603 41.667 25.93 13.63 0.00 2.66
381 2552 4.034858 TCTGTACGTACTGGATCGATCAAC 59.965 45.833 25.93 16.07 0.00 3.18
382 2553 4.034858 GTCTGTACGTACTGGATCGATCAA 59.965 45.833 25.93 15.16 0.00 2.57
384 2555 3.808726 AGTCTGTACGTACTGGATCGATC 59.191 47.826 26.23 17.36 0.00 3.69
385 2556 3.806380 AGTCTGTACGTACTGGATCGAT 58.194 45.455 26.23 0.00 0.00 3.59
386 2557 3.257469 AGTCTGTACGTACTGGATCGA 57.743 47.619 26.23 9.21 0.00 3.59
387 2558 3.493877 CCTAGTCTGTACGTACTGGATCG 59.506 52.174 26.23 15.24 0.00 3.69
388 2559 4.701765 TCCTAGTCTGTACGTACTGGATC 58.298 47.826 26.23 18.21 0.00 3.36
389 2560 4.408270 TCTCCTAGTCTGTACGTACTGGAT 59.592 45.833 26.23 18.86 0.00 3.41
390 2561 3.771479 TCTCCTAGTCTGTACGTACTGGA 59.229 47.826 26.23 20.24 0.00 3.86
391 2562 4.134379 TCTCCTAGTCTGTACGTACTGG 57.866 50.000 26.23 18.63 0.00 4.00
392 2563 5.358090 TGATCTCCTAGTCTGTACGTACTG 58.642 45.833 25.12 23.73 0.00 2.74
393 2564 5.611128 TGATCTCCTAGTCTGTACGTACT 57.389 43.478 25.12 10.47 0.00 2.73
394 2565 5.007528 GGTTGATCTCCTAGTCTGTACGTAC 59.992 48.000 18.90 18.90 0.00 3.67
395 2566 5.121811 GGTTGATCTCCTAGTCTGTACGTA 58.878 45.833 0.00 0.00 0.00 3.57
397 2568 3.002451 CGGTTGATCTCCTAGTCTGTACG 59.998 52.174 0.00 0.00 0.00 3.67
398 2569 3.946558 ACGGTTGATCTCCTAGTCTGTAC 59.053 47.826 0.00 0.00 0.00 2.90
400 2571 2.755655 CACGGTTGATCTCCTAGTCTGT 59.244 50.000 0.00 0.00 0.00 3.41
401 2572 3.017442 TCACGGTTGATCTCCTAGTCTG 58.983 50.000 0.00 0.00 0.00 3.51
402 2573 3.283751 CTCACGGTTGATCTCCTAGTCT 58.716 50.000 0.00 0.00 0.00 3.24
403 2574 2.359531 CCTCACGGTTGATCTCCTAGTC 59.640 54.545 0.00 0.00 0.00 2.59
404 2575 2.291670 ACCTCACGGTTGATCTCCTAGT 60.292 50.000 0.00 0.00 42.13 2.57
405 2576 2.379972 ACCTCACGGTTGATCTCCTAG 58.620 52.381 0.00 0.00 42.13 3.02
406 2577 2.526888 ACCTCACGGTTGATCTCCTA 57.473 50.000 0.00 0.00 42.13 2.94
407 2578 3.383162 ACCTCACGGTTGATCTCCT 57.617 52.632 0.00 0.00 42.13 3.69
419 2590 1.079750 GGTGCGAGAGGAACCTCAC 60.080 63.158 20.84 14.40 44.99 3.51
420 2591 1.533033 TGGTGCGAGAGGAACCTCA 60.533 57.895 20.84 0.23 44.99 3.86
421 2592 1.216710 CTGGTGCGAGAGGAACCTC 59.783 63.158 12.42 12.42 39.01 3.85
422 2593 2.948720 GCTGGTGCGAGAGGAACCT 61.949 63.158 0.00 0.00 39.01 3.50
423 2594 2.435059 GCTGGTGCGAGAGGAACC 60.435 66.667 0.00 0.00 39.01 3.62
424 2595 2.435059 GGCTGGTGCGAGAGGAAC 60.435 66.667 0.00 0.00 40.86 3.62
425 2596 2.922503 TGGCTGGTGCGAGAGGAA 60.923 61.111 0.00 0.00 40.82 3.36
426 2597 3.385384 CTGGCTGGTGCGAGAGGA 61.385 66.667 0.00 0.00 46.01 3.71
427 2598 3.385384 TCTGGCTGGTGCGAGAGG 61.385 66.667 0.00 0.00 46.49 3.69
430 2601 2.563050 TTCGATCTGGCTGGTGCGAG 62.563 60.000 0.00 0.00 44.76 5.03
431 2602 2.563050 CTTCGATCTGGCTGGTGCGA 62.563 60.000 0.00 0.00 40.82 5.10
432 2603 2.125552 TTCGATCTGGCTGGTGCG 60.126 61.111 0.00 0.00 40.82 5.34
433 2604 2.467826 GCTTCGATCTGGCTGGTGC 61.468 63.158 0.00 0.00 38.76 5.01
435 2606 0.463295 CATGCTTCGATCTGGCTGGT 60.463 55.000 0.00 0.00 0.00 4.00
436 2607 1.783031 GCATGCTTCGATCTGGCTGG 61.783 60.000 11.37 0.00 0.00 4.85
437 2608 1.647629 GCATGCTTCGATCTGGCTG 59.352 57.895 11.37 0.00 0.00 4.85
438 2609 1.886313 CGCATGCTTCGATCTGGCT 60.886 57.895 17.13 0.00 0.00 4.75
439 2610 2.630317 CGCATGCTTCGATCTGGC 59.370 61.111 17.13 0.00 0.00 4.85
440 2611 1.220169 CTCCGCATGCTTCGATCTGG 61.220 60.000 17.13 6.89 0.00 3.86
441 2612 0.529337 ACTCCGCATGCTTCGATCTG 60.529 55.000 17.13 0.00 0.00 2.90
442 2613 0.249238 GACTCCGCATGCTTCGATCT 60.249 55.000 17.13 0.00 0.00 2.75
444 2615 1.227380 GGACTCCGCATGCTTCGAT 60.227 57.895 17.13 0.00 0.00 3.59
445 2616 2.184322 GGACTCCGCATGCTTCGA 59.816 61.111 17.13 7.44 0.00 3.71
446 2617 2.892425 GGGACTCCGCATGCTTCG 60.892 66.667 17.13 5.79 0.00 3.79
447 2618 1.377202 TTGGGACTCCGCATGCTTC 60.377 57.895 17.13 6.53 35.08 3.86
451 2622 2.040544 GGTGTTGGGACTCCGCATG 61.041 63.158 0.00 0.00 35.08 4.06
453 2624 2.847234 AGGTGTTGGGACTCCGCA 60.847 61.111 0.00 0.00 42.81 5.69
454 2625 1.823169 TACAGGTGTTGGGACTCCGC 61.823 60.000 0.00 0.00 42.81 5.54
456 2627 2.572104 AGATTACAGGTGTTGGGACTCC 59.428 50.000 0.00 0.00 39.25 3.85
457 2628 3.983044 AGATTACAGGTGTTGGGACTC 57.017 47.619 0.00 0.00 0.00 3.36
458 2629 3.009143 GGAAGATTACAGGTGTTGGGACT 59.991 47.826 0.00 0.00 0.00 3.85
459 2630 3.344515 GGAAGATTACAGGTGTTGGGAC 58.655 50.000 0.00 0.00 0.00 4.46
461 2632 2.723273 GGGAAGATTACAGGTGTTGGG 58.277 52.381 0.00 0.00 0.00 4.12
462 2633 2.290071 ACGGGAAGATTACAGGTGTTGG 60.290 50.000 0.00 0.00 0.00 3.77
463 2634 3.000727 GACGGGAAGATTACAGGTGTTG 58.999 50.000 0.00 0.00 0.00 3.33
465 2636 2.496470 GAGACGGGAAGATTACAGGTGT 59.504 50.000 0.00 0.00 0.00 4.16
466 2637 2.496070 TGAGACGGGAAGATTACAGGTG 59.504 50.000 0.00 0.00 0.00 4.00
467 2638 2.816411 TGAGACGGGAAGATTACAGGT 58.184 47.619 0.00 0.00 0.00 4.00
468 2639 4.122776 CAATGAGACGGGAAGATTACAGG 58.877 47.826 0.00 0.00 0.00 4.00
469 2640 4.759782 ACAATGAGACGGGAAGATTACAG 58.240 43.478 0.00 0.00 0.00 2.74
470 2641 4.221924 TGACAATGAGACGGGAAGATTACA 59.778 41.667 0.00 0.00 0.00 2.41
471 2642 4.755411 TGACAATGAGACGGGAAGATTAC 58.245 43.478 0.00 0.00 0.00 1.89
472 2643 5.046591 AGTTGACAATGAGACGGGAAGATTA 60.047 40.000 0.00 0.00 0.00 1.75
473 2644 3.981071 TGACAATGAGACGGGAAGATT 57.019 42.857 0.00 0.00 0.00 2.40
474 2645 3.261897 AGTTGACAATGAGACGGGAAGAT 59.738 43.478 0.00 0.00 0.00 2.40
475 2646 2.632996 AGTTGACAATGAGACGGGAAGA 59.367 45.455 0.00 0.00 0.00 2.87
477 2648 4.610605 TTAGTTGACAATGAGACGGGAA 57.389 40.909 0.00 0.00 0.00 3.97
479 2650 4.503910 TGATTAGTTGACAATGAGACGGG 58.496 43.478 0.00 0.00 0.00 5.28
480 2651 6.668541 ATTGATTAGTTGACAATGAGACGG 57.331 37.500 0.00 0.00 33.79 4.79
487 2658 8.114331 ACATGTGACATTGATTAGTTGACAAT 57.886 30.769 0.00 0.00 35.10 2.71
488 2659 7.509141 ACATGTGACATTGATTAGTTGACAA 57.491 32.000 0.00 0.00 0.00 3.18
489 2660 7.228308 TGAACATGTGACATTGATTAGTTGACA 59.772 33.333 0.00 0.00 0.00 3.58
490 2661 7.584108 TGAACATGTGACATTGATTAGTTGAC 58.416 34.615 0.00 0.00 0.00 3.18
492 2663 7.025365 CCTGAACATGTGACATTGATTAGTTG 58.975 38.462 0.00 0.00 0.00 3.16
493 2664 6.942005 TCCTGAACATGTGACATTGATTAGTT 59.058 34.615 0.00 0.00 0.00 2.24
494 2665 6.372659 GTCCTGAACATGTGACATTGATTAGT 59.627 38.462 0.00 0.00 0.00 2.24
495 2666 6.456047 CGTCCTGAACATGTGACATTGATTAG 60.456 42.308 12.83 0.00 0.00 1.73
497 2668 4.154737 CGTCCTGAACATGTGACATTGATT 59.845 41.667 12.83 0.00 0.00 2.57
499 2670 3.066380 CGTCCTGAACATGTGACATTGA 58.934 45.455 12.83 7.72 0.00 2.57
500 2671 3.066380 TCGTCCTGAACATGTGACATTG 58.934 45.455 12.83 0.00 0.00 2.82
502 2673 3.055891 TGATCGTCCTGAACATGTGACAT 60.056 43.478 12.83 0.00 0.00 3.06
504 2675 2.959516 TGATCGTCCTGAACATGTGAC 58.040 47.619 0.00 1.09 0.00 3.67
505 2676 3.258123 TCTTGATCGTCCTGAACATGTGA 59.742 43.478 0.00 0.00 0.00 3.58
506 2677 3.588955 TCTTGATCGTCCTGAACATGTG 58.411 45.455 0.00 0.00 0.00 3.21
508 2679 2.606725 GCTCTTGATCGTCCTGAACATG 59.393 50.000 0.00 0.00 0.00 3.21
510 2681 1.895798 AGCTCTTGATCGTCCTGAACA 59.104 47.619 0.00 0.00 0.00 3.18
512 2683 3.089284 TGTAGCTCTTGATCGTCCTGAA 58.911 45.455 0.00 0.00 0.00 3.02
513 2684 2.423892 GTGTAGCTCTTGATCGTCCTGA 59.576 50.000 0.00 0.00 0.00 3.86
514 2685 2.480416 GGTGTAGCTCTTGATCGTCCTG 60.480 54.545 0.00 0.00 0.00 3.86
516 2687 1.476891 TGGTGTAGCTCTTGATCGTCC 59.523 52.381 0.00 0.00 0.00 4.79
518 2689 2.299013 TGTTGGTGTAGCTCTTGATCGT 59.701 45.455 0.00 0.00 0.00 3.73
519 2690 2.959516 TGTTGGTGTAGCTCTTGATCG 58.040 47.619 0.00 0.00 0.00 3.69
520 2691 4.065088 TGTTGTTGGTGTAGCTCTTGATC 58.935 43.478 0.00 0.00 0.00 2.92
521 2692 3.815401 GTGTTGTTGGTGTAGCTCTTGAT 59.185 43.478 0.00 0.00 0.00 2.57
522 2693 3.118408 AGTGTTGTTGGTGTAGCTCTTGA 60.118 43.478 0.00 0.00 0.00 3.02
523 2694 3.206150 AGTGTTGTTGGTGTAGCTCTTG 58.794 45.455 0.00 0.00 0.00 3.02
524 2695 3.560636 AGTGTTGTTGGTGTAGCTCTT 57.439 42.857 0.00 0.00 0.00 2.85
525 2696 3.206150 CAAGTGTTGTTGGTGTAGCTCT 58.794 45.455 0.00 0.00 0.00 4.09
526 2697 2.943033 ACAAGTGTTGTTGGTGTAGCTC 59.057 45.455 0.00 0.00 42.22 4.09
527 2698 2.999331 ACAAGTGTTGTTGGTGTAGCT 58.001 42.857 0.00 0.00 42.22 3.32
538 2709 5.756195 TTGAATGGAGAGAACAAGTGTTG 57.244 39.130 0.42 0.00 38.56 3.33
539 2710 9.911788 ATATATTGAATGGAGAGAACAAGTGTT 57.088 29.630 0.00 0.00 41.64 3.32
540 2711 9.911788 AATATATTGAATGGAGAGAACAAGTGT 57.088 29.630 0.00 0.00 0.00 3.55
542 2713 8.844244 GCAATATATTGAATGGAGAGAACAAGT 58.156 33.333 26.22 0.00 40.14 3.16
544 2715 8.985315 AGCAATATATTGAATGGAGAGAACAA 57.015 30.769 26.22 0.00 40.14 2.83
561 2732 9.143155 GGAGGAAGGGAAATTTTTAGCAATATA 57.857 33.333 0.00 0.00 0.00 0.86
562 2733 7.071196 GGGAGGAAGGGAAATTTTTAGCAATAT 59.929 37.037 0.00 0.00 0.00 1.28
563 2734 6.382859 GGGAGGAAGGGAAATTTTTAGCAATA 59.617 38.462 0.00 0.00 0.00 1.90
566 2737 4.093743 GGGAGGAAGGGAAATTTTTAGCA 58.906 43.478 0.00 0.00 0.00 3.49
567 2738 4.160439 CAGGGAGGAAGGGAAATTTTTAGC 59.840 45.833 0.00 0.00 0.00 3.09
568 2739 4.160439 GCAGGGAGGAAGGGAAATTTTTAG 59.840 45.833 0.00 0.00 0.00 1.85
569 2740 4.093743 GCAGGGAGGAAGGGAAATTTTTA 58.906 43.478 0.00 0.00 0.00 1.52
571 2742 2.158173 TGCAGGGAGGAAGGGAAATTTT 60.158 45.455 0.00 0.00 0.00 1.82
572 2743 1.432807 TGCAGGGAGGAAGGGAAATTT 59.567 47.619 0.00 0.00 0.00 1.82
573 2744 1.084018 TGCAGGGAGGAAGGGAAATT 58.916 50.000 0.00 0.00 0.00 1.82
575 2746 0.625849 GATGCAGGGAGGAAGGGAAA 59.374 55.000 0.00 0.00 0.00 3.13
576 2747 1.281925 GGATGCAGGGAGGAAGGGAA 61.282 60.000 0.00 0.00 0.00 3.97
578 2749 2.922234 GGATGCAGGGAGGAAGGG 59.078 66.667 0.00 0.00 0.00 3.95
579 2750 2.507944 CGGATGCAGGGAGGAAGG 59.492 66.667 0.00 0.00 0.00 3.46
580 2751 2.203126 GCGGATGCAGGGAGGAAG 60.203 66.667 0.00 0.00 42.15 3.46
600 2771 2.254737 CTCTGAGCTTGGCCTGGAGG 62.255 65.000 3.32 0.00 38.53 4.30
601 2772 1.221293 CTCTGAGCTTGGCCTGGAG 59.779 63.158 3.32 0.01 0.00 3.86
602 2773 2.964310 GCTCTGAGCTTGGCCTGGA 61.964 63.158 21.93 0.00 38.45 3.86
603 2774 2.438075 GCTCTGAGCTTGGCCTGG 60.438 66.667 21.93 0.00 38.45 4.45
604 2775 1.745864 CTGCTCTGAGCTTGGCCTG 60.746 63.158 28.04 7.85 42.97 4.85
605 2776 2.669849 CTGCTCTGAGCTTGGCCT 59.330 61.111 28.04 0.00 42.97 5.19
607 2778 3.132801 GGCTGCTCTGAGCTTGGC 61.133 66.667 28.04 25.79 42.97 4.52
609 2780 2.818714 CGGGCTGCTCTGAGCTTG 60.819 66.667 28.04 21.02 42.97 4.01
611 2782 3.768922 GTCGGGCTGCTCTGAGCT 61.769 66.667 28.04 0.00 42.97 4.09
612 2783 4.828925 GGTCGGGCTGCTCTGAGC 62.829 72.222 22.38 22.38 42.82 4.26
615 2786 3.376935 ATTCGGTCGGGCTGCTCTG 62.377 63.158 0.00 0.00 0.00 3.35
616 2787 3.077556 ATTCGGTCGGGCTGCTCT 61.078 61.111 0.00 0.00 0.00 4.09
617 2788 2.586357 GATTCGGTCGGGCTGCTC 60.586 66.667 0.00 0.00 0.00 4.26
629 2800 3.918220 GGTGCTGCGCTCGATTCG 61.918 66.667 9.73 0.00 0.00 3.34
630 2801 2.510238 AGGTGCTGCGCTCGATTC 60.510 61.111 9.73 0.00 0.00 2.52
631 2802 2.510238 GAGGTGCTGCGCTCGATT 60.510 61.111 9.73 0.00 0.00 3.34
632 2803 4.521062 GGAGGTGCTGCGCTCGAT 62.521 66.667 9.73 0.00 0.00 3.59
679 2850 3.249189 TGGGGTGGAGGTGCTCAC 61.249 66.667 0.00 0.00 31.08 3.51
680 2851 3.249189 GTGGGGTGGAGGTGCTCA 61.249 66.667 0.00 0.00 31.08 4.26
681 2852 3.249189 TGTGGGGTGGAGGTGCTC 61.249 66.667 0.00 0.00 0.00 4.26
682 2853 3.570212 GTGTGGGGTGGAGGTGCT 61.570 66.667 0.00 0.00 0.00 4.40
683 2854 4.660938 GGTGTGGGGTGGAGGTGC 62.661 72.222 0.00 0.00 0.00 5.01
684 2855 2.854032 AGGTGTGGGGTGGAGGTG 60.854 66.667 0.00 0.00 0.00 4.00
685 2856 2.854032 CAGGTGTGGGGTGGAGGT 60.854 66.667 0.00 0.00 0.00 3.85
686 2857 4.351054 GCAGGTGTGGGGTGGAGG 62.351 72.222 0.00 0.00 0.00 4.30
698 2869 1.682257 GCAGAGGAAAGAGGCAGGT 59.318 57.895 0.00 0.00 0.00 4.00
725 2896 4.159506 AGAGAGATGACGAAGGGAGAAAAG 59.840 45.833 0.00 0.00 0.00 2.27
763 3255 1.682257 AGGCAAACTCCTCAGCTCC 59.318 57.895 0.00 0.00 0.00 4.70
817 3309 3.414700 GACAACTGCCGACTGCCG 61.415 66.667 0.00 0.00 40.16 5.69
818 3310 3.050275 GGACAACTGCCGACTGCC 61.050 66.667 0.00 0.00 40.16 4.85
830 3322 2.281484 GCAGTTGGAGGCGGACAA 60.281 61.111 0.00 0.00 0.00 3.18
860 3352 0.602106 ATTCAGCGCATCCAGATCCG 60.602 55.000 11.47 0.00 0.00 4.18
926 3418 4.803426 GACACAGAGGCCTCCGCG 62.803 72.222 29.54 19.80 35.02 6.46
936 3428 3.072086 AGGGATATAGAGGGGACACAGA 58.928 50.000 0.00 0.00 0.00 3.41
938 3430 3.051341 ACAAGGGATATAGAGGGGACACA 60.051 47.826 0.00 0.00 0.00 3.72
939 3431 3.325135 CACAAGGGATATAGAGGGGACAC 59.675 52.174 0.00 0.00 0.00 3.67
940 3432 3.587498 CACAAGGGATATAGAGGGGACA 58.413 50.000 0.00 0.00 0.00 4.02
942 3434 2.621070 GCACAAGGGATATAGAGGGGA 58.379 52.381 0.00 0.00 0.00 4.81
943 3435 1.276421 CGCACAAGGGATATAGAGGGG 59.724 57.143 0.00 0.00 0.00 4.79
944 3436 1.971357 ACGCACAAGGGATATAGAGGG 59.029 52.381 0.00 0.00 0.00 4.30
1252 4153 4.719369 GAAGCCACCGACGTCGCT 62.719 66.667 31.73 20.17 38.17 4.93
1356 4259 4.744631 AGTTTGGCTAAATTTCAGCAAACG 59.255 37.500 21.32 0.00 40.68 3.60
1481 4405 3.081409 GTCCCTTAGGGCGAGCCA 61.081 66.667 13.54 0.00 43.94 4.75
1491 4415 3.199677 CGGCGATTTTACATGTCCCTTA 58.800 45.455 0.00 0.00 0.00 2.69
1497 4423 0.732571 CAGGCGGCGATTTTACATGT 59.267 50.000 12.98 2.69 0.00 3.21
1499 4425 1.299541 CTCAGGCGGCGATTTTACAT 58.700 50.000 12.98 0.00 0.00 2.29
1500 4426 0.742990 CCTCAGGCGGCGATTTTACA 60.743 55.000 12.98 0.00 0.00 2.41
1625 4555 2.023673 CAAGTGAAAGTGCTCACCCAA 58.976 47.619 0.52 0.00 45.77 4.12
1655 4585 2.614057 CCCATCATGTCTACTTTTCGGC 59.386 50.000 0.00 0.00 0.00 5.54
1656 4586 2.614057 GCCCATCATGTCTACTTTTCGG 59.386 50.000 0.00 0.00 0.00 4.30
1725 4655 5.163332 GGGAAGGAGAATAATACACGGTCTT 60.163 44.000 0.00 0.00 0.00 3.01
1737 4667 3.309296 CACTAGCCAGGGAAGGAGAATA 58.691 50.000 0.00 0.00 0.00 1.75
1758 4688 9.244799 TCTGTGACGTATATGATGTTTTGATAC 57.755 33.333 0.00 0.00 0.00 2.24
1759 4689 9.463443 CTCTGTGACGTATATGATGTTTTGATA 57.537 33.333 0.00 0.00 0.00 2.15
1801 4958 4.601406 AATTAATTCAGGTGGTAGGCCA 57.399 40.909 5.01 0.00 43.73 5.36
1802 4959 6.127101 AGTTAATTAATTCAGGTGGTAGGCC 58.873 40.000 3.39 0.00 0.00 5.19
1803 4960 6.826741 TGAGTTAATTAATTCAGGTGGTAGGC 59.173 38.462 16.84 0.00 30.04 3.93
1804 4961 8.674607 GTTGAGTTAATTAATTCAGGTGGTAGG 58.325 37.037 19.06 0.00 34.20 3.18
1805 4962 9.449719 AGTTGAGTTAATTAATTCAGGTGGTAG 57.550 33.333 19.06 0.00 34.20 3.18
1806 4963 9.226606 CAGTTGAGTTAATTAATTCAGGTGGTA 57.773 33.333 19.06 5.34 34.20 3.25
1807 4964 7.942341 TCAGTTGAGTTAATTAATTCAGGTGGT 59.058 33.333 19.06 5.49 34.20 4.16
1827 4984 1.946768 TCGCAGGGTTCTTTTCAGTTG 59.053 47.619 0.00 0.00 0.00 3.16
1831 4988 3.478857 TTACTCGCAGGGTTCTTTTCA 57.521 42.857 0.00 0.00 0.00 2.69
1835 4992 2.039879 ACCATTTACTCGCAGGGTTCTT 59.960 45.455 0.00 0.00 0.00 2.52
1839 4996 0.981183 TCACCATTTACTCGCAGGGT 59.019 50.000 0.00 0.00 0.00 4.34
1847 5004 4.442706 CTTACTCCGCATCACCATTTACT 58.557 43.478 0.00 0.00 0.00 2.24
1859 5016 0.888619 CAGTCAGACCTTACTCCGCA 59.111 55.000 0.00 0.00 0.00 5.69
1862 5019 2.497675 TGATGCAGTCAGACCTTACTCC 59.502 50.000 0.00 0.00 31.80 3.85
1887 5044 1.137675 TGCATCTCCTCGATCAACTGG 59.862 52.381 0.00 0.00 0.00 4.00
1954 5112 6.752815 AGTTTCTCCGTCGAGATAATCTTTTC 59.247 38.462 0.00 0.00 44.68 2.29
1968 5126 3.988517 CAGTCTTAACCAGTTTCTCCGTC 59.011 47.826 0.00 0.00 0.00 4.79
2164 5322 7.643569 AATATCATATATGCAAAATGCCCGA 57.356 32.000 7.92 0.00 44.23 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.