Multiple sequence alignment - TraesCS2A01G566100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G566100 chr2A 100.000 3211 0 0 1 3211 765394650 765391440 0.000000e+00 5930.0
1 TraesCS2A01G566100 chr2A 84.994 893 93 13 1303 2166 765441996 765441116 0.000000e+00 869.0
2 TraesCS2A01G566100 chr2A 80.222 1173 139 57 1694 2836 765441580 765440471 0.000000e+00 795.0
3 TraesCS2A01G566100 chr2A 87.429 708 36 20 66 734 765443212 765442519 0.000000e+00 765.0
4 TraesCS2A01G566100 chr2A 80.378 1004 104 39 1298 2265 765373989 765374935 0.000000e+00 676.0
5 TraesCS2A01G566100 chr2A 79.525 884 135 21 1321 2177 765516097 765515233 3.570000e-164 588.0
6 TraesCS2A01G566100 chr2A 78.587 906 127 30 1322 2180 765278093 765278978 1.310000e-148 536.0
7 TraesCS2A01G566100 chr2A 79.172 845 87 49 393 1187 765548531 765547726 1.330000e-138 503.0
8 TraesCS2A01G566100 chr2A 83.042 572 59 20 1349 1888 765547547 765546982 4.820000e-133 484.0
9 TraesCS2A01G566100 chr2A 81.171 632 53 27 193 783 765372905 765373511 6.320000e-122 448.0
10 TraesCS2A01G566100 chr2A 91.385 325 21 3 902 1226 765373634 765373951 3.800000e-119 438.0
11 TraesCS2A01G566100 chr2A 90.432 324 27 4 916 1238 765442342 765442022 1.060000e-114 424.0
12 TraesCS2A01G566100 chr2A 84.615 312 32 8 902 1207 765516435 765516134 2.420000e-76 296.0
13 TraesCS2A01G566100 chr2A 86.017 236 26 5 995 1226 765277845 765278077 2.470000e-61 246.0
14 TraesCS2A01G566100 chr2A 87.730 163 15 2 484 645 765517234 765517076 5.470000e-43 185.0
15 TraesCS2A01G566100 chr2A 87.050 139 15 3 2834 2970 765428772 765428635 1.540000e-33 154.0
16 TraesCS2A01G566100 chr2A 95.455 66 3 0 837 902 765373507 765373572 4.380000e-19 106.0
17 TraesCS2A01G566100 chr2A 84.783 92 10 4 3120 3209 580047764 580047675 4.410000e-14 89.8
18 TraesCS2A01G566100 chr2A 82.474 97 15 2 3114 3209 102087143 102087238 2.050000e-12 84.2
19 TraesCS2A01G566100 chr2D 87.688 1665 126 30 902 2541 639746871 639745261 0.000000e+00 1866.0
20 TraesCS2A01G566100 chr2D 90.482 872 65 5 1298 2166 639821593 639820737 0.000000e+00 1134.0
21 TraesCS2A01G566100 chr2D 84.068 998 96 32 1298 2265 639733472 639734436 0.000000e+00 904.0
22 TraesCS2A01G566100 chr2D 88.873 683 62 11 2540 3211 639745222 639744543 0.000000e+00 828.0
23 TraesCS2A01G566100 chr2D 83.654 936 64 37 1 902 639822899 639822019 0.000000e+00 798.0
24 TraesCS2A01G566100 chr2D 87.942 481 42 8 66 539 639747701 639747230 1.300000e-153 553.0
25 TraesCS2A01G566100 chr2D 94.225 329 17 2 902 1229 639733111 639733438 4.780000e-138 501.0
26 TraesCS2A01G566100 chr2D 92.615 325 23 1 902 1226 639821957 639821634 1.740000e-127 466.0
27 TraesCS2A01G566100 chr2D 88.991 327 28 3 2186 2508 639820750 639820428 6.450000e-107 398.0
28 TraesCS2A01G566100 chr2D 83.117 462 45 18 193 645 639732193 639732630 1.080000e-104 390.0
29 TraesCS2A01G566100 chr2D 90.476 252 18 3 656 902 639732799 639733049 8.590000e-86 327.0
30 TraesCS2A01G566100 chr2D 84.195 348 25 9 394 727 639872787 639872456 8.650000e-81 311.0
31 TraesCS2A01G566100 chr2D 84.566 311 31 9 901 1205 639872323 639872024 3.130000e-75 292.0
32 TraesCS2A01G566100 chr2D 83.077 325 21 10 237 548 639891690 639891387 6.830000e-67 265.0
33 TraesCS2A01G566100 chr2D 86.920 237 18 8 990 1225 639891078 639890854 1.480000e-63 254.0
34 TraesCS2A01G566100 chr2D 84.080 201 12 7 583 767 639747229 639747033 3.290000e-40 176.0
35 TraesCS2A01G566100 chr2D 83.696 92 13 2 3119 3209 338674632 338674722 5.710000e-13 86.1
36 TraesCS2A01G566100 chr2D 91.667 60 4 1 77 135 639732111 639732170 7.380000e-12 82.4
37 TraesCS2A01G566100 chr2D 89.231 65 7 0 1 65 639747793 639747729 7.380000e-12 82.4
38 TraesCS2A01G566100 chr2B 87.020 1641 148 26 902 2508 799047700 799046091 0.000000e+00 1790.0
39 TraesCS2A01G566100 chr2B 95.231 650 29 2 39 687 799048549 799047901 0.000000e+00 1027.0
40 TraesCS2A01G566100 chr2B 82.131 1192 120 48 1334 2495 798957997 798959125 0.000000e+00 935.0
41 TraesCS2A01G566100 chr2B 83.333 984 110 26 1303 2265 799029478 799030428 0.000000e+00 859.0
42 TraesCS2A01G566100 chr2B 83.176 850 60 38 66 902 799108586 799107807 0.000000e+00 701.0
43 TraesCS2A01G566100 chr2B 82.168 858 66 44 66 898 799028270 799029065 0.000000e+00 656.0
44 TraesCS2A01G566100 chr2B 84.044 727 64 19 193 898 798956848 798957543 0.000000e+00 652.0
45 TraesCS2A01G566100 chr2B 85.841 565 64 5 1708 2265 799106671 799106116 1.280000e-163 586.0
46 TraesCS2A01G566100 chr2B 90.625 384 30 2 1303 1683 799107341 799106961 3.700000e-139 505.0
47 TraesCS2A01G566100 chr2B 93.114 334 16 4 902 1234 798957617 798957944 1.730000e-132 483.0
48 TraesCS2A01G566100 chr2B 89.067 375 33 5 2597 2966 799046094 799045723 2.920000e-125 459.0
49 TraesCS2A01G566100 chr2B 89.426 331 25 6 902 1230 799029131 799029453 2.980000e-110 409.0
50 TraesCS2A01G566100 chr2B 83.761 351 50 5 2573 2916 798959365 798959715 3.090000e-85 326.0
51 TraesCS2A01G566100 chr2B 95.429 175 8 0 727 901 799047904 799047730 2.440000e-71 279.0
52 TraesCS2A01G566100 chr2B 90.323 62 6 0 1 62 799028178 799028239 7.380000e-12 82.4
53 TraesCS2A01G566100 chr4D 91.367 139 12 0 2978 3116 224847964 224848102 1.180000e-44 191.0
54 TraesCS2A01G566100 chr4A 91.912 136 11 0 2981 3116 549728834 549728699 1.180000e-44 191.0
55 TraesCS2A01G566100 chr3B 91.367 139 12 0 2978 3116 631413098 631413236 1.180000e-44 191.0
56 TraesCS2A01G566100 chr3B 83.516 91 15 0 3120 3210 513945843 513945753 5.710000e-13 86.1
57 TraesCS2A01G566100 chr7B 91.176 136 12 0 2981 3116 721913987 721913852 5.470000e-43 185.0
58 TraesCS2A01G566100 chr7A 90.647 139 13 0 2978 3116 707540914 707541052 5.470000e-43 185.0
59 TraesCS2A01G566100 chr1A 91.176 136 12 0 2981 3116 279375806 279375671 5.470000e-43 185.0
60 TraesCS2A01G566100 chr6A 90.580 138 13 0 2981 3118 505986535 505986398 1.970000e-42 183.0
61 TraesCS2A01G566100 chr6A 83.516 91 13 2 3120 3209 191218649 191218738 2.050000e-12 84.2
62 TraesCS2A01G566100 chr5D 89.510 143 14 1 2981 3123 263352371 263352230 2.550000e-41 180.0
63 TraesCS2A01G566100 chr7D 91.139 79 7 0 3133 3211 579970411 579970333 1.220000e-19 108.0
64 TraesCS2A01G566100 chr7D 85.897 78 11 0 3120 3197 598266712 598266635 2.050000e-12 84.2
65 TraesCS2A01G566100 chr5A 84.615 91 12 2 3120 3209 666060444 666060533 4.410000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G566100 chr2A 765391440 765394650 3210 True 5930.000000 5930 100.000000 1 3211 1 chr2A.!!$R2 3210
1 TraesCS2A01G566100 chr2A 765440471 765443212 2741 True 713.250000 869 85.769250 66 2836 4 chr2A.!!$R4 2770
2 TraesCS2A01G566100 chr2A 765546982 765548531 1549 True 493.500000 503 81.107000 393 1888 2 chr2A.!!$R6 1495
3 TraesCS2A01G566100 chr2A 765372905 765374935 2030 False 417.000000 676 87.097250 193 2265 4 chr2A.!!$F3 2072
4 TraesCS2A01G566100 chr2A 765277845 765278978 1133 False 391.000000 536 82.302000 995 2180 2 chr2A.!!$F2 1185
5 TraesCS2A01G566100 chr2A 765515233 765517234 2001 True 356.333333 588 83.956667 484 2177 3 chr2A.!!$R5 1693
6 TraesCS2A01G566100 chr2D 639744543 639747793 3250 True 701.080000 1866 87.562800 1 3211 5 chr2D.!!$R1 3210
7 TraesCS2A01G566100 chr2D 639820428 639822899 2471 True 699.000000 1134 88.935500 1 2508 4 chr2D.!!$R2 2507
8 TraesCS2A01G566100 chr2D 639732111 639734436 2325 False 440.880000 904 88.710600 77 2265 5 chr2D.!!$F2 2188
9 TraesCS2A01G566100 chr2D 639872024 639872787 763 True 301.500000 311 84.380500 394 1205 2 chr2D.!!$R3 811
10 TraesCS2A01G566100 chr2D 639890854 639891690 836 True 259.500000 265 84.998500 237 1225 2 chr2D.!!$R4 988
11 TraesCS2A01G566100 chr2B 799045723 799048549 2826 True 888.750000 1790 91.686750 39 2966 4 chr2B.!!$R1 2927
12 TraesCS2A01G566100 chr2B 798956848 798959715 2867 False 599.000000 935 85.762500 193 2916 4 chr2B.!!$F1 2723
13 TraesCS2A01G566100 chr2B 799106116 799108586 2470 True 597.333333 701 86.547333 66 2265 3 chr2B.!!$R2 2199
14 TraesCS2A01G566100 chr2B 799028178 799030428 2250 False 501.600000 859 86.312500 1 2265 4 chr2B.!!$F2 2264

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 101 1.340248 CCATATTCCCGCACGTACTCT 59.660 52.381 0.00 0.00 0.00 3.24 F
736 1399 2.173669 ATGTGAGCGTGCGCATACC 61.174 57.895 15.91 4.92 44.88 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 1925 1.298993 CTCCTGCTGATGGTGCTGT 59.701 57.895 0.0 0.0 0.0 4.40 R
2582 4296 0.531532 AGTGTGCTCTGTGTGTCTGC 60.532 55.000 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 101 1.340248 CCATATTCCCGCACGTACTCT 59.660 52.381 0.00 0.00 0.00 3.24
367 404 5.796935 CGCAGAAAAATGATGGAAACTACAG 59.203 40.000 0.00 0.00 0.00 2.74
437 489 2.357009 CACTCAAAGATACATGCTGGCC 59.643 50.000 0.00 0.00 0.00 5.36
500 572 6.040166 CAGCTATATGCAGGTCCTTTTCATTT 59.960 38.462 0.00 0.00 45.94 2.32
599 679 3.135348 AGTGCTTGCAATCAGCCTAGATA 59.865 43.478 2.60 0.00 44.83 1.98
736 1399 2.173669 ATGTGAGCGTGCGCATACC 61.174 57.895 15.91 4.92 44.88 2.73
783 1521 2.495270 TCAAGAGTCTGTGCTCATCTCC 59.505 50.000 13.63 2.39 37.94 3.71
840 1578 5.246656 CAGCCATGATCCTTCTCTAGATCTT 59.753 44.000 0.00 0.00 39.72 2.40
871 1614 8.894768 ATCTATAAAGATCCTTTTCACCTTCG 57.105 34.615 0.00 0.00 38.04 3.79
1014 1925 4.444876 GGAAGGTAGATGCTAGCAATGGAA 60.445 45.833 23.54 2.93 0.00 3.53
1235 2196 8.553696 GTTCGTTTTGTAATTTTACTCTCTCCA 58.446 33.333 2.45 0.00 34.77 3.86
1266 2227 7.397892 TTTTGAACTGAAACCATGACAAGTA 57.602 32.000 0.00 0.00 0.00 2.24
1267 2228 6.618287 TTGAACTGAAACCATGACAAGTAG 57.382 37.500 0.00 0.00 0.00 2.57
1268 2229 5.063204 TGAACTGAAACCATGACAAGTAGG 58.937 41.667 0.00 0.00 0.00 3.18
1270 2231 4.899502 ACTGAAACCATGACAAGTAGGAG 58.100 43.478 0.00 0.00 0.00 3.69
1271 2232 4.348168 ACTGAAACCATGACAAGTAGGAGT 59.652 41.667 0.00 0.00 0.00 3.85
1662 2660 2.356313 CAGACCAACGAGCACGCT 60.356 61.111 2.62 0.00 43.96 5.07
1904 3257 1.049289 GCGATGACCTCCCCTACCTT 61.049 60.000 0.00 0.00 0.00 3.50
1916 3269 4.492160 TACCTTCAGAGCGCCGCG 62.492 66.667 8.83 8.83 0.00 6.46
2000 3359 1.300620 CGACGTGCTGGAGTCCAAA 60.301 57.895 14.17 1.30 34.10 3.28
2180 3629 2.480416 GCTGCACGAATACTCTGCTACT 60.480 50.000 0.00 0.00 31.13 2.57
2186 3635 2.123342 GAATACTCTGCTACTGCTGCG 58.877 52.381 0.00 0.00 40.48 5.18
2470 3983 5.897250 ACTTGGTAAATTTCAGGGACAGTTT 59.103 36.000 0.00 0.00 0.00 2.66
2490 4003 6.907212 CAGTTTGTTTATCGTAGGCATGATTC 59.093 38.462 0.00 0.00 32.51 2.52
2497 4010 3.575630 TCGTAGGCATGATTCGCTAATC 58.424 45.455 4.06 4.06 41.69 1.75
2552 4266 3.702045 GAGCCTAGATGACACTTGTACCT 59.298 47.826 0.00 0.00 0.00 3.08
2560 4274 7.182817 AGATGACACTTGTACCTTAGCATAA 57.817 36.000 0.00 0.00 0.00 1.90
2561 4275 7.042335 AGATGACACTTGTACCTTAGCATAAC 58.958 38.462 0.00 0.00 0.00 1.89
2564 4278 6.110411 ACACTTGTACCTTAGCATAACAGT 57.890 37.500 0.00 0.00 0.00 3.55
2587 4301 5.047847 TGTGTGTTCTACTTTACAGCAGAC 58.952 41.667 0.00 0.00 0.00 3.51
2599 4313 0.531311 CAGCAGACACACAGAGCACA 60.531 55.000 0.00 0.00 0.00 4.57
2668 4389 8.678199 TCACTCAGTAGTATATGTTTCACTCAG 58.322 37.037 0.00 0.00 33.48 3.35
2710 4431 4.698276 CCATACGCGTGATATAACTTTGC 58.302 43.478 24.59 0.00 0.00 3.68
2827 4550 6.494893 TTAATTGAGTTTCCCTGTCAATCG 57.505 37.500 0.00 0.00 39.47 3.34
2844 4568 5.235616 GTCAATCGTCTTTTCTGGTGTAACA 59.764 40.000 0.00 0.00 39.98 2.41
2856 4580 4.272991 TCTGGTGTAACAAATTTACGCGTT 59.727 37.500 20.78 0.00 39.98 4.84
2868 4592 8.444715 ACAAATTTACGCGTTATGAGATTGTAA 58.555 29.630 20.78 0.00 0.00 2.41
2952 4676 4.067972 GTCAACAAAGTGACAGGGACTA 57.932 45.455 0.55 0.00 46.00 2.59
2986 4710 6.186957 TGATCAAGCTTTTAAATCTAGGCCA 58.813 36.000 5.01 0.00 0.00 5.36
2990 4714 8.766994 TCAAGCTTTTAAATCTAGGCCAATAT 57.233 30.769 5.01 0.00 0.00 1.28
3011 4756 1.073284 GTCACTTTTGGGGCTCTACCA 59.927 52.381 0.00 0.00 42.05 3.25
3065 4810 5.820131 TCATTTGCAAATGTATCATCCGAC 58.180 37.500 37.98 0.00 44.66 4.79
3067 4812 5.635417 TTTGCAAATGTATCATCCGACAA 57.365 34.783 8.05 0.00 0.00 3.18
3116 4861 5.458595 TGATATCTAGCCCGATATGTCCAT 58.541 41.667 3.98 0.00 36.88 3.41
3122 4867 4.317530 AGCCCGATATGTCCATCTAGTA 57.682 45.455 0.00 0.00 0.00 1.82
3177 4922 3.616721 ACGGCGTTCCTGTCTGCT 61.617 61.111 6.77 0.00 0.00 4.24
3180 4925 1.890894 GGCGTTCCTGTCTGCTAGA 59.109 57.895 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.059190 GTCCCCTCCTCTTCCCGTC 61.059 68.421 0.00 0.00 0.00 4.79
9 10 2.191981 TATTGTCCCCTCCTCTTCCC 57.808 55.000 0.00 0.00 0.00 3.97
12 13 2.173569 GTGCATATTGTCCCCTCCTCTT 59.826 50.000 0.00 0.00 0.00 2.85
17 18 1.678101 GCAAGTGCATATTGTCCCCTC 59.322 52.381 14.01 0.00 41.59 4.30
51 52 1.483415 AGTACGTGCGGGAATATGGTT 59.517 47.619 0.00 0.00 0.00 3.67
73 101 3.554934 ACCTCAATTCAAGCTCAACACA 58.445 40.909 0.00 0.00 0.00 3.72
367 404 2.294078 CCACCACCACCTCTCTCCC 61.294 68.421 0.00 0.00 0.00 4.30
500 572 6.730977 TGGAAGAAGATAGAAGAGAAAAGGGA 59.269 38.462 0.00 0.00 0.00 4.20
599 679 7.639113 TTTCTGAGGACAAAGTACAATTGTT 57.361 32.000 17.78 0.00 40.90 2.83
736 1399 1.075425 GCAGAGCAGAGCACACGTAG 61.075 60.000 0.00 0.00 0.00 3.51
871 1614 1.069500 GTTGTATGCGTGTGGACCAAC 60.069 52.381 0.00 0.00 0.00 3.77
1014 1925 1.298993 CTCCTGCTGATGGTGCTGT 59.701 57.895 0.00 0.00 0.00 4.40
1235 2196 9.696917 GTCATGGTTTCAGTTCAAAATAGAAAT 57.303 29.630 0.00 0.00 31.73 2.17
1266 2227 5.189934 CCCTCAGTTCCAAAATACTACTCCT 59.810 44.000 0.00 0.00 0.00 3.69
1267 2228 5.189145 TCCCTCAGTTCCAAAATACTACTCC 59.811 44.000 0.00 0.00 0.00 3.85
1268 2229 6.070710 ACTCCCTCAGTTCCAAAATACTACTC 60.071 42.308 0.00 0.00 26.56 2.59
1270 2231 6.051179 ACTCCCTCAGTTCCAAAATACTAC 57.949 41.667 0.00 0.00 26.56 2.73
1271 2232 6.727231 TGTACTCCCTCAGTTCCAAAATACTA 59.273 38.462 0.00 0.00 36.43 1.82
1550 2524 4.141965 TCATGCCGATCACGCCGT 62.142 61.111 0.00 0.00 38.29 5.68
1662 2660 2.898612 TGAATTACGTACCTGTGTGGGA 59.101 45.455 0.00 0.00 41.11 4.37
1888 3238 1.651770 TCTGAAGGTAGGGGAGGTCAT 59.348 52.381 0.00 0.00 0.00 3.06
1897 3250 2.105128 CGGCGCTCTGAAGGTAGG 59.895 66.667 7.64 0.00 0.00 3.18
1967 3320 2.161808 CACGTCGTCAGAGTACTGGATT 59.838 50.000 0.00 0.00 43.60 3.01
2000 3359 4.580580 GGGATGTTGTTGAAAAGACTCTGT 59.419 41.667 0.00 0.00 0.00 3.41
2120 3503 1.002544 CTGTCCAGGAAGTTCCAGTCC 59.997 57.143 23.87 9.32 39.61 3.85
2165 3614 2.123342 GCAGCAGTAGCAGAGTATTCG 58.877 52.381 0.00 0.00 45.49 3.34
2186 3635 0.739112 GCTCTAGGTGCAGCTGTGAC 60.739 60.000 28.10 12.22 32.48 3.67
2195 3644 2.755655 TCTACTTCACTGCTCTAGGTGC 59.244 50.000 0.00 0.00 33.91 5.01
2284 3761 9.454859 CATGGACATCATCTACTATCTGTACTA 57.545 37.037 0.00 0.00 32.92 1.82
2428 3938 3.851976 AGTGAAACAGAGTAGCCTACG 57.148 47.619 0.00 0.00 41.43 3.51
2470 3983 3.493129 GCGAATCATGCCTACGATAAACA 59.507 43.478 0.00 0.00 0.00 2.83
2552 4266 6.755206 AGTAGAACACACACTGTTATGCTAA 58.245 36.000 0.00 0.00 42.96 3.09
2560 4274 4.809426 GCTGTAAAGTAGAACACACACTGT 59.191 41.667 0.00 0.00 32.89 3.55
2561 4275 4.808895 TGCTGTAAAGTAGAACACACACTG 59.191 41.667 0.00 0.00 0.00 3.66
2564 4278 5.047847 GTCTGCTGTAAAGTAGAACACACA 58.952 41.667 1.79 0.00 32.61 3.72
2575 4289 2.478134 GCTCTGTGTGTCTGCTGTAAAG 59.522 50.000 0.00 0.00 0.00 1.85
2582 4296 0.531532 AGTGTGCTCTGTGTGTCTGC 60.532 55.000 0.00 0.00 0.00 4.26
2587 4301 2.009051 TGAAACAGTGTGCTCTGTGTG 58.991 47.619 0.00 0.00 46.25 3.82
2599 4313 2.820059 TCATCAGCGAGTGAAACAGT 57.180 45.000 0.00 0.00 41.43 3.55
2668 4389 3.004315 TGGCGAAATGAAAGGTTCTTCAC 59.996 43.478 0.00 0.00 38.12 3.18
2710 4431 1.740025 GAACGGCCCAGAAAGATCAAG 59.260 52.381 0.00 0.00 0.00 3.02
2743 4464 2.159531 CGTGGGCACATCACACATTTAG 60.160 50.000 0.00 0.00 34.91 1.85
2827 4550 7.096763 GCGTAAATTTGTTACACCAGAAAAGAC 60.097 37.037 0.00 0.00 0.00 3.01
2844 4568 8.662141 ACTTACAATCTCATAACGCGTAAATTT 58.338 29.630 14.46 0.00 0.00 1.82
2952 4676 0.037877 AGCTTGATCAAGGCAGTGCT 59.962 50.000 31.41 21.18 38.80 4.40
2986 4710 4.322057 AGAGCCCCAAAAGTGACATATT 57.678 40.909 0.00 0.00 0.00 1.28
2990 4714 1.073284 GGTAGAGCCCCAAAAGTGACA 59.927 52.381 0.00 0.00 0.00 3.58
3039 4784 8.239314 GTCGGATGATACATTTGCAAATGATAT 58.761 33.333 43.53 34.82 46.72 1.63
3040 4785 7.228308 TGTCGGATGATACATTTGCAAATGATA 59.772 33.333 43.53 32.79 46.72 2.15
3041 4786 6.039605 TGTCGGATGATACATTTGCAAATGAT 59.960 34.615 43.53 33.26 46.72 2.45
3042 4787 5.356470 TGTCGGATGATACATTTGCAAATGA 59.644 36.000 43.53 31.03 46.72 2.57
3043 4788 8.623322 CCTTGTCGGATGATACATTTGCAAATG 61.623 40.741 38.26 38.26 42.57 2.32
3044 4789 5.833406 TGTCGGATGATACATTTGCAAAT 57.167 34.783 18.99 18.99 0.00 2.32
3045 4790 5.392919 CCTTGTCGGATGATACATTTGCAAA 60.393 40.000 15.44 15.44 33.16 3.68
3046 4791 4.096231 CCTTGTCGGATGATACATTTGCAA 59.904 41.667 0.00 0.00 33.16 4.08
3047 4792 3.627123 CCTTGTCGGATGATACATTTGCA 59.373 43.478 0.00 0.00 33.16 4.08
3048 4793 3.876914 TCCTTGTCGGATGATACATTTGC 59.123 43.478 0.00 0.00 36.69 3.68
3049 4794 4.273480 GGTCCTTGTCGGATGATACATTTG 59.727 45.833 0.00 0.00 45.44 2.32
3050 4795 4.451900 GGTCCTTGTCGGATGATACATTT 58.548 43.478 0.00 0.00 45.44 2.32
3051 4796 3.492656 CGGTCCTTGTCGGATGATACATT 60.493 47.826 0.00 0.00 45.44 2.71
3052 4797 2.035961 CGGTCCTTGTCGGATGATACAT 59.964 50.000 0.00 0.00 45.44 2.29
3053 4798 1.407618 CGGTCCTTGTCGGATGATACA 59.592 52.381 0.00 0.00 45.44 2.29
3093 4838 4.867086 TGGACATATCGGGCTAGATATCA 58.133 43.478 5.32 6.32 40.68 2.15
3116 4861 0.820074 GAGCTGGCTCCGCTACTAGA 60.820 60.000 11.14 0.00 37.96 2.43
3177 4922 5.258051 ACGATTTGTAGGGGCAAAAATCTA 58.742 37.500 0.00 0.00 41.03 1.98
3180 4925 4.562552 CCAACGATTTGTAGGGGCAAAAAT 60.563 41.667 0.00 0.00 41.03 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.