Multiple sequence alignment - TraesCS2A01G563800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G563800 chr2A 100.000 2549 0 0 1 2549 764219619 764222167 0.000000e+00 4708
1 TraesCS2A01G563800 chr2A 96.158 1978 57 3 572 2549 6302711 6300753 0.000000e+00 3214
2 TraesCS2A01G563800 chr2A 96.853 1144 32 2 572 1715 771778419 771779558 0.000000e+00 1910
3 TraesCS2A01G563800 chr2A 94.889 1174 38 7 571 1742 100836040 100837193 0.000000e+00 1816
4 TraesCS2A01G563800 chr3A 97.323 1980 51 2 571 2549 719846458 719848436 0.000000e+00 3362
5 TraesCS2A01G563800 chr3A 97.252 837 20 2 1716 2549 683236507 683235671 0.000000e+00 1415
6 TraesCS2A01G563800 chr3A 78.448 232 42 7 4 232 652728911 652729137 7.350000e-31 145
7 TraesCS2A01G563800 chr7A 96.482 1990 63 6 565 2549 18189922 18191909 0.000000e+00 3280
8 TraesCS2A01G563800 chr7A 94.930 2012 54 21 572 2549 150203038 150201041 0.000000e+00 3107
9 TraesCS2A01G563800 chr7A 96.516 1148 33 2 572 1715 49208210 49209354 0.000000e+00 1892
10 TraesCS2A01G563800 chr7A 95.747 1152 33 3 565 1715 689996377 689995241 0.000000e+00 1842
11 TraesCS2A01G563800 chr7A 97.482 834 21 0 1716 2549 49209387 49210220 0.000000e+00 1424
12 TraesCS2A01G563800 chr7A 96.655 837 25 2 1716 2549 689995208 689994372 0.000000e+00 1387
13 TraesCS2A01G563800 chr5A 95.922 2011 45 15 572 2549 563443930 563445936 0.000000e+00 3225
14 TraesCS2A01G563800 chr5A 78.541 233 40 9 4 232 10117881 10118107 7.350000e-31 145
15 TraesCS2A01G563800 chr6A 95.892 1144 32 2 572 1715 200078199 200079327 0.000000e+00 1838
16 TraesCS2A01G563800 chr6A 96.815 879 25 2 1671 2549 14689817 14688942 0.000000e+00 1465
17 TraesCS2A01G563800 chr5B 94.800 1173 40 6 572 1742 185022644 185023797 0.000000e+00 1808
18 TraesCS2A01G563800 chr2B 82.495 497 77 4 37 528 798046349 798046840 6.520000e-116 427
19 TraesCS2A01G563800 chr1A 74.811 397 70 20 4 379 63481419 63481806 4.390000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G563800 chr2A 764219619 764222167 2548 False 4708.0 4708 100.000 1 2549 1 chr2A.!!$F2 2548
1 TraesCS2A01G563800 chr2A 6300753 6302711 1958 True 3214.0 3214 96.158 572 2549 1 chr2A.!!$R1 1977
2 TraesCS2A01G563800 chr2A 771778419 771779558 1139 False 1910.0 1910 96.853 572 1715 1 chr2A.!!$F3 1143
3 TraesCS2A01G563800 chr2A 100836040 100837193 1153 False 1816.0 1816 94.889 571 1742 1 chr2A.!!$F1 1171
4 TraesCS2A01G563800 chr3A 719846458 719848436 1978 False 3362.0 3362 97.323 571 2549 1 chr3A.!!$F2 1978
5 TraesCS2A01G563800 chr3A 683235671 683236507 836 True 1415.0 1415 97.252 1716 2549 1 chr3A.!!$R1 833
6 TraesCS2A01G563800 chr7A 18189922 18191909 1987 False 3280.0 3280 96.482 565 2549 1 chr7A.!!$F1 1984
7 TraesCS2A01G563800 chr7A 150201041 150203038 1997 True 3107.0 3107 94.930 572 2549 1 chr7A.!!$R1 1977
8 TraesCS2A01G563800 chr7A 49208210 49210220 2010 False 1658.0 1892 96.999 572 2549 2 chr7A.!!$F2 1977
9 TraesCS2A01G563800 chr7A 689994372 689996377 2005 True 1614.5 1842 96.201 565 2549 2 chr7A.!!$R2 1984
10 TraesCS2A01G563800 chr5A 563443930 563445936 2006 False 3225.0 3225 95.922 572 2549 1 chr5A.!!$F2 1977
11 TraesCS2A01G563800 chr6A 200078199 200079327 1128 False 1838.0 1838 95.892 572 1715 1 chr6A.!!$F1 1143
12 TraesCS2A01G563800 chr6A 14688942 14689817 875 True 1465.0 1465 96.815 1671 2549 1 chr6A.!!$R1 878
13 TraesCS2A01G563800 chr5B 185022644 185023797 1153 False 1808.0 1808 94.800 572 1742 1 chr5B.!!$F1 1170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.034477 CGTGCCCCTAAGGACCAATT 60.034 55.0 0.0 0.0 38.24 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 1822 0.320771 CGGCACTTGGCTCTACACTT 60.321 55.0 0.9 0.0 44.01 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.900568 CTGATAACAGCCTAGAAGTCTTTG 57.099 41.667 0.00 0.00 37.33 2.77
25 26 6.360370 TGATAACAGCCTAGAAGTCTTTGT 57.640 37.500 0.00 0.00 0.00 2.83
26 27 6.166279 TGATAACAGCCTAGAAGTCTTTGTG 58.834 40.000 0.00 0.00 0.00 3.33
27 28 3.409026 ACAGCCTAGAAGTCTTTGTGG 57.591 47.619 0.00 0.00 0.00 4.17
28 29 2.972713 ACAGCCTAGAAGTCTTTGTGGA 59.027 45.455 0.00 0.00 0.00 4.02
29 30 3.244249 ACAGCCTAGAAGTCTTTGTGGAC 60.244 47.826 0.00 0.00 36.56 4.02
30 31 2.028930 AGCCTAGAAGTCTTTGTGGACG 60.029 50.000 0.00 0.00 40.76 4.79
31 32 2.288886 GCCTAGAAGTCTTTGTGGACGT 60.289 50.000 0.00 0.00 40.76 4.34
32 33 3.318017 CCTAGAAGTCTTTGTGGACGTG 58.682 50.000 0.00 0.00 40.76 4.49
33 34 1.583054 AGAAGTCTTTGTGGACGTGC 58.417 50.000 0.00 0.00 40.76 5.34
34 35 0.586802 GAAGTCTTTGTGGACGTGCC 59.413 55.000 4.04 0.43 40.76 5.01
35 36 0.818040 AAGTCTTTGTGGACGTGCCC 60.818 55.000 4.04 0.00 40.76 5.36
36 37 2.112297 TCTTTGTGGACGTGCCCC 59.888 61.111 4.04 0.00 34.97 5.80
37 38 2.113139 CTTTGTGGACGTGCCCCT 59.887 61.111 4.04 0.00 34.97 4.79
38 39 1.122632 TCTTTGTGGACGTGCCCCTA 61.123 55.000 4.04 0.00 34.97 3.53
39 40 0.250553 CTTTGTGGACGTGCCCCTAA 60.251 55.000 4.04 0.00 34.97 2.69
40 41 0.250553 TTTGTGGACGTGCCCCTAAG 60.251 55.000 4.04 0.00 34.97 2.18
41 42 2.119484 TTGTGGACGTGCCCCTAAGG 62.119 60.000 4.04 0.00 39.47 2.69
42 43 2.120940 TGGACGTGCCCCTAAGGA 59.879 61.111 4.04 0.00 38.24 3.36
43 44 2.288025 TGGACGTGCCCCTAAGGAC 61.288 63.158 4.04 0.00 38.24 3.85
44 45 2.582978 GACGTGCCCCTAAGGACC 59.417 66.667 0.00 0.00 38.24 4.46
45 46 2.203877 ACGTGCCCCTAAGGACCA 60.204 61.111 0.00 0.00 38.24 4.02
46 47 1.833787 GACGTGCCCCTAAGGACCAA 61.834 60.000 0.00 0.00 38.24 3.67
47 48 1.205460 ACGTGCCCCTAAGGACCAAT 61.205 55.000 0.00 0.00 38.24 3.16
48 49 0.034477 CGTGCCCCTAAGGACCAATT 60.034 55.000 0.00 0.00 38.24 2.32
49 50 1.763968 GTGCCCCTAAGGACCAATTC 58.236 55.000 0.00 0.00 38.24 2.17
50 51 0.629058 TGCCCCTAAGGACCAATTCC 59.371 55.000 0.00 0.00 46.33 3.01
57 58 2.042944 GGACCAATTCCCTGGGGC 60.043 66.667 14.00 0.00 41.16 5.80
58 59 2.042944 GACCAATTCCCTGGGGCC 60.043 66.667 14.00 0.00 41.16 5.80
59 60 4.060667 ACCAATTCCCTGGGGCCG 62.061 66.667 14.00 0.00 41.16 6.13
60 61 4.060667 CCAATTCCCTGGGGCCGT 62.061 66.667 14.00 0.00 32.32 5.68
61 62 2.685534 CCAATTCCCTGGGGCCGTA 61.686 63.158 14.00 0.00 32.32 4.02
62 63 1.152963 CAATTCCCTGGGGCCGTAG 60.153 63.158 14.00 0.00 34.68 3.51
63 64 1.618447 AATTCCCTGGGGCCGTAGT 60.618 57.895 14.00 0.00 34.68 2.73
64 65 1.632965 AATTCCCTGGGGCCGTAGTC 61.633 60.000 14.00 0.00 34.68 2.59
67 68 3.387947 CCTGGGGCCGTAGTCGTT 61.388 66.667 0.00 0.00 35.01 3.85
68 69 2.125673 CTGGGGCCGTAGTCGTTG 60.126 66.667 0.00 0.00 35.01 4.10
69 70 2.918802 TGGGGCCGTAGTCGTTGT 60.919 61.111 0.00 0.00 35.01 3.32
70 71 2.344872 GGGGCCGTAGTCGTTGTT 59.655 61.111 0.00 0.00 35.01 2.83
71 72 2.030958 GGGGCCGTAGTCGTTGTTG 61.031 63.158 0.00 0.00 35.01 3.33
72 73 1.301165 GGGCCGTAGTCGTTGTTGT 60.301 57.895 0.00 0.00 35.01 3.32
73 74 0.881600 GGGCCGTAGTCGTTGTTGTT 60.882 55.000 0.00 0.00 35.01 2.83
74 75 0.233848 GGCCGTAGTCGTTGTTGTTG 59.766 55.000 0.00 0.00 35.01 3.33
75 76 1.210870 GCCGTAGTCGTTGTTGTTGA 58.789 50.000 0.00 0.00 35.01 3.18
76 77 1.593933 GCCGTAGTCGTTGTTGTTGAA 59.406 47.619 0.00 0.00 35.01 2.69
77 78 2.348218 GCCGTAGTCGTTGTTGTTGAAG 60.348 50.000 0.00 0.00 35.01 3.02
78 79 2.348218 CCGTAGTCGTTGTTGTTGAAGC 60.348 50.000 0.00 0.00 35.01 3.86
79 80 2.348218 CGTAGTCGTTGTTGTTGAAGCC 60.348 50.000 0.00 0.00 0.00 4.35
80 81 2.038387 AGTCGTTGTTGTTGAAGCCT 57.962 45.000 0.00 0.00 0.00 4.58
81 82 2.365582 AGTCGTTGTTGTTGAAGCCTT 58.634 42.857 0.00 0.00 0.00 4.35
82 83 2.354821 AGTCGTTGTTGTTGAAGCCTTC 59.645 45.455 0.00 0.00 0.00 3.46
83 84 2.096819 GTCGTTGTTGTTGAAGCCTTCA 59.903 45.455 2.24 2.24 38.04 3.02
84 85 2.750166 TCGTTGTTGTTGAAGCCTTCAA 59.250 40.909 15.70 15.70 46.68 2.69
92 93 1.939974 TGAAGCCTTCAATCGATCCG 58.060 50.000 4.27 0.00 36.59 4.18
93 94 1.480545 TGAAGCCTTCAATCGATCCGA 59.519 47.619 4.27 0.00 36.59 4.55
94 95 2.093711 TGAAGCCTTCAATCGATCCGAA 60.094 45.455 4.27 4.20 35.39 4.30
95 96 2.231215 AGCCTTCAATCGATCCGAAG 57.769 50.000 22.00 22.00 39.99 3.79
96 97 1.757118 AGCCTTCAATCGATCCGAAGA 59.243 47.619 27.06 8.92 39.99 2.87
97 98 2.168521 AGCCTTCAATCGATCCGAAGAA 59.831 45.455 27.06 14.24 39.99 2.52
98 99 3.134458 GCCTTCAATCGATCCGAAGAAT 58.866 45.455 27.06 0.00 39.99 2.40
99 100 3.185391 GCCTTCAATCGATCCGAAGAATC 59.815 47.826 27.06 16.80 39.99 2.52
100 101 4.626042 CCTTCAATCGATCCGAAGAATCT 58.374 43.478 27.06 0.00 39.99 2.40
101 102 4.447054 CCTTCAATCGATCCGAAGAATCTG 59.553 45.833 27.06 13.70 39.99 2.90
102 103 3.982475 TCAATCGATCCGAAGAATCTGG 58.018 45.455 0.00 0.00 39.99 3.86
103 104 2.447244 ATCGATCCGAAGAATCTGGC 57.553 50.000 0.00 0.00 39.99 4.85
104 105 1.111277 TCGATCCGAAGAATCTGGCA 58.889 50.000 0.00 0.00 31.06 4.92
105 106 1.202417 TCGATCCGAAGAATCTGGCAC 60.202 52.381 0.00 0.00 31.06 5.01
106 107 1.587547 GATCCGAAGAATCTGGCACC 58.412 55.000 0.00 0.00 0.00 5.01
107 108 0.911769 ATCCGAAGAATCTGGCACCA 59.088 50.000 0.00 0.00 0.00 4.17
108 109 0.690192 TCCGAAGAATCTGGCACCAA 59.310 50.000 0.00 0.00 0.00 3.67
109 110 1.073125 TCCGAAGAATCTGGCACCAAA 59.927 47.619 0.00 0.00 0.00 3.28
110 111 2.094675 CCGAAGAATCTGGCACCAAAT 58.905 47.619 0.00 0.00 0.00 2.32
111 112 3.054728 TCCGAAGAATCTGGCACCAAATA 60.055 43.478 0.00 0.00 0.00 1.40
112 113 3.885297 CCGAAGAATCTGGCACCAAATAT 59.115 43.478 0.00 0.00 0.00 1.28
113 114 5.063204 CCGAAGAATCTGGCACCAAATATA 58.937 41.667 0.00 0.00 0.00 0.86
114 115 5.707298 CCGAAGAATCTGGCACCAAATATAT 59.293 40.000 0.00 0.00 0.00 0.86
115 116 6.878923 CCGAAGAATCTGGCACCAAATATATA 59.121 38.462 0.00 0.00 0.00 0.86
116 117 7.554118 CCGAAGAATCTGGCACCAAATATATAT 59.446 37.037 0.00 0.00 0.00 0.86
117 118 8.607459 CGAAGAATCTGGCACCAAATATATATC 58.393 37.037 0.00 0.00 0.00 1.63
118 119 8.498054 AAGAATCTGGCACCAAATATATATCG 57.502 34.615 0.00 0.00 0.00 2.92
119 120 7.624549 AGAATCTGGCACCAAATATATATCGT 58.375 34.615 0.00 0.00 0.00 3.73
120 121 7.766278 AGAATCTGGCACCAAATATATATCGTC 59.234 37.037 0.00 0.00 0.00 4.20
121 122 6.353404 TCTGGCACCAAATATATATCGTCA 57.647 37.500 0.00 0.00 0.00 4.35
122 123 6.946340 TCTGGCACCAAATATATATCGTCAT 58.054 36.000 0.00 0.00 0.00 3.06
123 124 7.041721 TCTGGCACCAAATATATATCGTCATC 58.958 38.462 0.00 0.00 0.00 2.92
124 125 5.810074 TGGCACCAAATATATATCGTCATCG 59.190 40.000 0.00 0.00 38.55 3.84
125 126 5.276868 GGCACCAAATATATATCGTCATCGC 60.277 44.000 0.00 0.00 36.96 4.58
126 127 5.554510 GCACCAAATATATATCGTCATCGCG 60.555 44.000 0.00 0.00 36.96 5.87
127 128 5.515270 CACCAAATATATATCGTCATCGCGT 59.485 40.000 5.77 0.00 36.96 6.01
128 129 6.689669 CACCAAATATATATCGTCATCGCGTA 59.310 38.462 5.77 0.00 36.96 4.42
129 130 6.690098 ACCAAATATATATCGTCATCGCGTAC 59.310 38.462 5.77 2.23 36.96 3.67
130 131 6.129794 CCAAATATATATCGTCATCGCGTACG 60.130 42.308 19.82 19.82 40.40 3.67
131 132 2.149358 TATATCGTCATCGCGTACGC 57.851 50.000 29.83 29.83 38.94 4.42
132 133 0.236449 ATATCGTCATCGCGTACGCA 59.764 50.000 36.44 24.53 42.06 5.24
133 134 0.236449 TATCGTCATCGCGTACGCAT 59.764 50.000 36.44 25.52 42.06 4.73
134 135 0.997226 ATCGTCATCGCGTACGCATC 60.997 55.000 36.44 20.27 42.06 3.91
135 136 2.830506 GTCATCGCGTACGCATCG 59.169 61.111 36.44 23.90 42.06 3.84
136 137 1.937846 GTCATCGCGTACGCATCGT 60.938 57.895 36.44 17.86 44.35 3.73
137 138 1.937362 TCATCGCGTACGCATCGTG 60.937 57.895 36.44 26.62 41.39 4.35
139 140 2.277057 TCGCGTACGCATCGTGAG 60.277 61.111 36.44 20.08 41.39 3.51
140 141 3.312504 CGCGTACGCATCGTGAGG 61.313 66.667 36.44 16.22 41.39 3.86
141 142 2.101575 GCGTACGCATCGTGAGGA 59.898 61.111 33.90 0.00 41.39 3.71
142 143 1.515519 GCGTACGCATCGTGAGGAA 60.516 57.895 33.90 0.00 41.39 3.36
143 144 1.740043 GCGTACGCATCGTGAGGAAC 61.740 60.000 33.90 0.00 41.39 3.62
144 145 1.138047 CGTACGCATCGTGAGGAACC 61.138 60.000 0.52 0.00 41.39 3.62
145 146 0.804933 GTACGCATCGTGAGGAACCC 60.805 60.000 1.77 0.00 41.39 4.11
146 147 0.968901 TACGCATCGTGAGGAACCCT 60.969 55.000 1.77 0.00 41.39 4.34
147 148 0.968901 ACGCATCGTGAGGAACCCTA 60.969 55.000 0.00 0.00 39.18 3.53
148 149 0.174845 CGCATCGTGAGGAACCCTAA 59.825 55.000 0.00 0.00 31.76 2.69
149 150 1.653151 GCATCGTGAGGAACCCTAAC 58.347 55.000 0.00 0.00 31.76 2.34
150 151 1.742750 GCATCGTGAGGAACCCTAACC 60.743 57.143 0.00 0.00 31.26 2.85
151 152 1.831736 CATCGTGAGGAACCCTAACCT 59.168 52.381 0.00 0.00 31.26 3.50
155 156 1.521141 GAGGAACCCTAACCTCGCC 59.479 63.158 0.00 0.00 42.25 5.54
156 157 2.186125 GGAACCCTAACCTCGCCG 59.814 66.667 0.00 0.00 0.00 6.46
157 158 2.510918 GAACCCTAACCTCGCCGC 60.511 66.667 0.00 0.00 0.00 6.53
158 159 4.091939 AACCCTAACCTCGCCGCC 62.092 66.667 0.00 0.00 0.00 6.13
161 162 4.530857 CCTAACCTCGCCGCCCTG 62.531 72.222 0.00 0.00 0.00 4.45
162 163 3.458163 CTAACCTCGCCGCCCTGA 61.458 66.667 0.00 0.00 0.00 3.86
163 164 3.432051 CTAACCTCGCCGCCCTGAG 62.432 68.421 0.00 0.00 0.00 3.35
169 170 3.458163 CGCCGCCCTGAGGAGTTA 61.458 66.667 0.00 0.00 33.47 2.24
170 171 2.987125 GCCGCCCTGAGGAGTTAA 59.013 61.111 0.00 0.00 33.47 2.01
171 172 1.449778 GCCGCCCTGAGGAGTTAAC 60.450 63.158 0.00 0.00 33.47 2.01
172 173 1.980052 CCGCCCTGAGGAGTTAACA 59.020 57.895 8.61 0.00 33.47 2.41
173 174 0.108138 CCGCCCTGAGGAGTTAACAG 60.108 60.000 8.61 0.00 33.47 3.16
174 175 0.895530 CGCCCTGAGGAGTTAACAGA 59.104 55.000 8.61 0.00 34.07 3.41
175 176 1.275291 CGCCCTGAGGAGTTAACAGAA 59.725 52.381 8.61 0.00 34.07 3.02
176 177 2.289444 CGCCCTGAGGAGTTAACAGAAA 60.289 50.000 8.61 0.00 34.07 2.52
177 178 3.619979 CGCCCTGAGGAGTTAACAGAAAT 60.620 47.826 8.61 0.00 34.07 2.17
178 179 3.942115 GCCCTGAGGAGTTAACAGAAATC 59.058 47.826 8.61 0.00 34.07 2.17
179 180 4.323868 GCCCTGAGGAGTTAACAGAAATCT 60.324 45.833 8.61 0.00 34.07 2.40
180 181 5.104900 GCCCTGAGGAGTTAACAGAAATCTA 60.105 44.000 8.61 0.00 34.07 1.98
181 182 6.342111 CCCTGAGGAGTTAACAGAAATCTAC 58.658 44.000 8.61 0.00 34.07 2.59
182 183 6.037098 CCTGAGGAGTTAACAGAAATCTACG 58.963 44.000 8.61 0.00 34.07 3.51
183 184 6.127703 CCTGAGGAGTTAACAGAAATCTACGA 60.128 42.308 8.61 0.00 34.07 3.43
184 185 7.406031 TGAGGAGTTAACAGAAATCTACGAT 57.594 36.000 8.61 0.00 0.00 3.73
185 186 7.258441 TGAGGAGTTAACAGAAATCTACGATG 58.742 38.462 8.61 0.00 0.00 3.84
186 187 6.574350 AGGAGTTAACAGAAATCTACGATGG 58.426 40.000 8.61 0.00 0.00 3.51
187 188 6.380274 AGGAGTTAACAGAAATCTACGATGGA 59.620 38.462 8.61 0.00 0.00 3.41
188 189 6.697892 GGAGTTAACAGAAATCTACGATGGAG 59.302 42.308 8.61 0.00 0.00 3.86
189 190 6.043411 AGTTAACAGAAATCTACGATGGAGC 58.957 40.000 8.61 0.00 0.00 4.70
190 191 4.744795 AACAGAAATCTACGATGGAGCT 57.255 40.909 0.00 0.00 0.00 4.09
191 192 4.314740 ACAGAAATCTACGATGGAGCTC 57.685 45.455 4.71 4.71 0.00 4.09
192 193 3.068873 ACAGAAATCTACGATGGAGCTCC 59.931 47.826 26.78 26.78 0.00 4.70
205 206 2.909006 TGGAGCTCCATCTAATCCATCC 59.091 50.000 32.00 1.13 42.01 3.51
206 207 2.238395 GGAGCTCCATCTAATCCATCCC 59.762 54.545 28.43 0.00 35.64 3.85
207 208 1.905215 AGCTCCATCTAATCCATCCCG 59.095 52.381 0.00 0.00 0.00 5.14
208 209 1.902508 GCTCCATCTAATCCATCCCGA 59.097 52.381 0.00 0.00 0.00 5.14
209 210 2.354203 GCTCCATCTAATCCATCCCGAC 60.354 54.545 0.00 0.00 0.00 4.79
210 211 2.899900 CTCCATCTAATCCATCCCGACA 59.100 50.000 0.00 0.00 0.00 4.35
211 212 2.899900 TCCATCTAATCCATCCCGACAG 59.100 50.000 0.00 0.00 0.00 3.51
212 213 2.899900 CCATCTAATCCATCCCGACAGA 59.100 50.000 0.00 0.00 0.00 3.41
213 214 3.517100 CCATCTAATCCATCCCGACAGAT 59.483 47.826 0.00 0.00 0.00 2.90
214 215 4.502016 CATCTAATCCATCCCGACAGATG 58.498 47.826 0.00 0.00 42.79 2.90
215 216 3.844640 TCTAATCCATCCCGACAGATGA 58.155 45.455 10.48 0.46 45.43 2.92
216 217 4.223144 TCTAATCCATCCCGACAGATGAA 58.777 43.478 10.48 0.00 45.43 2.57
217 218 2.918712 ATCCATCCCGACAGATGAAC 57.081 50.000 10.48 0.00 45.43 3.18
218 219 1.866015 TCCATCCCGACAGATGAACT 58.134 50.000 10.48 0.00 45.43 3.01
219 220 1.757118 TCCATCCCGACAGATGAACTC 59.243 52.381 10.48 0.00 45.43 3.01
220 221 1.536922 CCATCCCGACAGATGAACTCG 60.537 57.143 10.48 0.00 45.43 4.18
221 222 1.405463 CATCCCGACAGATGAACTCGA 59.595 52.381 4.59 0.00 45.43 4.04
222 223 1.095600 TCCCGACAGATGAACTCGAG 58.904 55.000 11.84 11.84 0.00 4.04
223 224 0.101399 CCCGACAGATGAACTCGAGG 59.899 60.000 18.41 0.00 0.00 4.63
224 225 1.095600 CCGACAGATGAACTCGAGGA 58.904 55.000 18.41 0.00 0.00 3.71
225 226 1.064803 CCGACAGATGAACTCGAGGAG 59.935 57.143 18.41 0.70 35.52 3.69
226 227 1.064803 CGACAGATGAACTCGAGGAGG 59.935 57.143 18.41 1.37 33.35 4.30
227 228 0.820871 ACAGATGAACTCGAGGAGGC 59.179 55.000 18.41 3.32 33.35 4.70
228 229 1.110442 CAGATGAACTCGAGGAGGCT 58.890 55.000 18.41 4.38 33.35 4.58
229 230 1.066908 CAGATGAACTCGAGGAGGCTC 59.933 57.143 18.41 5.78 33.35 4.70
231 232 1.388065 ATGAACTCGAGGAGGCTCGG 61.388 60.000 18.41 0.26 45.82 4.63
232 233 1.749638 GAACTCGAGGAGGCTCGGA 60.750 63.158 18.41 4.97 45.82 4.55
233 234 1.720694 GAACTCGAGGAGGCTCGGAG 61.721 65.000 18.41 20.46 45.82 4.63
234 235 3.591835 CTCGAGGAGGCTCGGAGC 61.592 72.222 21.57 21.57 45.82 4.70
243 244 3.812019 GCTCGGAGCCGACTCGAA 61.812 66.667 19.20 0.00 44.48 3.71
244 245 2.405594 CTCGGAGCCGACTCGAAG 59.594 66.667 7.66 0.00 44.48 3.79
245 246 2.046604 TCGGAGCCGACTCGAAGA 60.047 61.111 7.66 0.00 44.48 2.87
246 247 1.645704 CTCGGAGCCGACTCGAAGAA 61.646 60.000 7.66 0.00 44.48 2.52
247 248 1.226435 CGGAGCCGACTCGAAGAAG 60.226 63.158 2.00 0.00 44.48 2.85
248 249 1.645704 CGGAGCCGACTCGAAGAAGA 61.646 60.000 2.00 0.00 44.48 2.87
249 250 0.526662 GGAGCCGACTCGAAGAAGAA 59.473 55.000 0.00 0.00 44.48 2.52
250 251 1.468395 GGAGCCGACTCGAAGAAGAAG 60.468 57.143 0.00 0.00 44.48 2.85
251 252 0.109039 AGCCGACTCGAAGAAGAAGC 60.109 55.000 0.00 0.00 34.09 3.86
252 253 0.388649 GCCGACTCGAAGAAGAAGCA 60.389 55.000 0.00 0.00 34.09 3.91
253 254 1.737363 GCCGACTCGAAGAAGAAGCAT 60.737 52.381 0.00 0.00 34.09 3.79
254 255 2.189342 CCGACTCGAAGAAGAAGCATC 58.811 52.381 0.00 0.00 34.09 3.91
255 256 1.843149 CGACTCGAAGAAGAAGCATCG 59.157 52.381 0.00 0.00 34.09 3.84
256 257 1.586123 GACTCGAAGAAGAAGCATCGC 59.414 52.381 0.00 0.00 34.09 4.58
257 258 1.067565 ACTCGAAGAAGAAGCATCGCA 60.068 47.619 0.00 0.00 34.09 5.10
258 259 1.995484 CTCGAAGAAGAAGCATCGCAA 59.005 47.619 0.00 0.00 34.09 4.85
259 260 2.606725 CTCGAAGAAGAAGCATCGCAAT 59.393 45.455 0.00 0.00 34.09 3.56
260 261 2.604914 TCGAAGAAGAAGCATCGCAATC 59.395 45.455 0.00 0.00 35.39 2.67
261 262 2.286067 CGAAGAAGAAGCATCGCAATCC 60.286 50.000 0.00 0.00 0.00 3.01
262 263 1.293924 AGAAGAAGCATCGCAATCCG 58.706 50.000 0.00 0.00 38.61 4.18
263 264 1.009829 GAAGAAGCATCGCAATCCGT 58.990 50.000 0.00 0.00 38.35 4.69
264 265 1.004504 GAAGAAGCATCGCAATCCGTC 60.005 52.381 0.00 0.00 38.35 4.79
265 266 0.811616 AGAAGCATCGCAATCCGTCC 60.812 55.000 0.00 0.00 38.35 4.79
266 267 2.094126 GAAGCATCGCAATCCGTCCG 62.094 60.000 0.00 0.00 38.35 4.79
267 268 2.572095 AAGCATCGCAATCCGTCCGA 62.572 55.000 0.00 0.00 38.35 4.55
268 269 2.589492 GCATCGCAATCCGTCCGAG 61.589 63.158 0.00 0.00 38.35 4.63
269 270 2.279517 ATCGCAATCCGTCCGAGC 60.280 61.111 0.00 0.00 38.35 5.03
270 271 3.076258 ATCGCAATCCGTCCGAGCA 62.076 57.895 0.00 0.00 38.35 4.26
271 272 2.369257 ATCGCAATCCGTCCGAGCAT 62.369 55.000 0.00 0.00 38.35 3.79
272 273 2.589492 CGCAATCCGTCCGAGCATC 61.589 63.158 0.00 0.00 0.00 3.91
273 274 1.521457 GCAATCCGTCCGAGCATCA 60.521 57.895 0.00 0.00 33.17 3.07
274 275 1.766143 GCAATCCGTCCGAGCATCAC 61.766 60.000 0.00 0.00 33.17 3.06
275 276 1.144057 AATCCGTCCGAGCATCACC 59.856 57.895 0.00 0.00 33.17 4.02
276 277 2.311688 AATCCGTCCGAGCATCACCC 62.312 60.000 0.00 0.00 33.17 4.61
277 278 4.530857 CCGTCCGAGCATCACCCC 62.531 72.222 0.00 0.00 33.17 4.95
278 279 3.461773 CGTCCGAGCATCACCCCT 61.462 66.667 0.00 0.00 33.17 4.79
279 280 2.187946 GTCCGAGCATCACCCCTG 59.812 66.667 0.00 0.00 33.17 4.45
280 281 3.785859 TCCGAGCATCACCCCTGC 61.786 66.667 0.00 0.00 39.97 4.85
282 283 4.147449 CGAGCATCACCCCTGCGA 62.147 66.667 0.00 0.00 44.38 5.10
283 284 2.202987 GAGCATCACCCCTGCGAG 60.203 66.667 0.00 0.00 44.38 5.03
284 285 3.746949 GAGCATCACCCCTGCGAGG 62.747 68.421 0.00 0.00 44.38 4.63
285 286 3.785859 GCATCACCCCTGCGAGGA 61.786 66.667 4.00 0.00 37.67 3.71
286 287 2.187946 CATCACCCCTGCGAGGAC 59.812 66.667 4.00 0.00 37.67 3.85
287 288 2.039624 ATCACCCCTGCGAGGACT 59.960 61.111 4.00 0.00 37.67 3.85
288 289 1.043116 CATCACCCCTGCGAGGACTA 61.043 60.000 4.00 0.00 37.67 2.59
289 290 0.325296 ATCACCCCTGCGAGGACTAA 60.325 55.000 4.00 0.00 37.67 2.24
290 291 0.325296 TCACCCCTGCGAGGACTAAT 60.325 55.000 4.00 0.00 37.67 1.73
291 292 0.105039 CACCCCTGCGAGGACTAATC 59.895 60.000 4.00 0.00 37.67 1.75
292 293 1.049289 ACCCCTGCGAGGACTAATCC 61.049 60.000 4.00 0.00 46.69 3.01
314 315 6.648192 TCCTAACCTATATACTAGACGGAGC 58.352 44.000 0.00 0.00 0.00 4.70
315 316 6.214208 TCCTAACCTATATACTAGACGGAGCA 59.786 42.308 0.00 0.00 0.00 4.26
316 317 6.539464 CCTAACCTATATACTAGACGGAGCAG 59.461 46.154 0.00 0.00 0.00 4.24
317 318 5.758790 ACCTATATACTAGACGGAGCAGA 57.241 43.478 0.00 0.00 0.00 4.26
318 319 5.736813 ACCTATATACTAGACGGAGCAGAG 58.263 45.833 0.00 0.00 0.00 3.35
319 320 5.120399 CCTATATACTAGACGGAGCAGAGG 58.880 50.000 0.00 0.00 0.00 3.69
320 321 1.611519 ATACTAGACGGAGCAGAGGC 58.388 55.000 0.00 0.00 41.61 4.70
321 322 0.255033 TACTAGACGGAGCAGAGGCA 59.745 55.000 0.00 0.00 44.61 4.75
322 323 1.034838 ACTAGACGGAGCAGAGGCAG 61.035 60.000 0.00 0.00 44.61 4.85
323 324 1.000771 TAGACGGAGCAGAGGCAGT 60.001 57.895 0.00 0.00 44.61 4.40
324 325 0.255033 TAGACGGAGCAGAGGCAGTA 59.745 55.000 0.00 0.00 44.61 2.74
325 326 0.396417 AGACGGAGCAGAGGCAGTAT 60.396 55.000 0.00 0.00 44.61 2.12
326 327 0.461961 GACGGAGCAGAGGCAGTATT 59.538 55.000 0.00 0.00 44.61 1.89
327 328 0.461961 ACGGAGCAGAGGCAGTATTC 59.538 55.000 0.00 0.00 44.61 1.75
328 329 0.249657 CGGAGCAGAGGCAGTATTCC 60.250 60.000 0.00 0.00 44.61 3.01
329 330 0.107643 GGAGCAGAGGCAGTATTCCC 59.892 60.000 0.00 0.00 44.61 3.97
330 331 0.107643 GAGCAGAGGCAGTATTCCCC 59.892 60.000 0.00 0.00 44.61 4.81
331 332 0.327000 AGCAGAGGCAGTATTCCCCT 60.327 55.000 0.00 0.00 44.61 4.79
332 333 0.548510 GCAGAGGCAGTATTCCCCTT 59.451 55.000 0.00 0.00 40.72 3.95
333 334 1.475930 GCAGAGGCAGTATTCCCCTTC 60.476 57.143 0.00 0.00 40.72 3.46
334 335 1.141858 CAGAGGCAGTATTCCCCTTCC 59.858 57.143 0.00 0.00 0.00 3.46
335 336 0.474614 GAGGCAGTATTCCCCTTCCC 59.525 60.000 0.00 0.00 0.00 3.97
336 337 0.253630 AGGCAGTATTCCCCTTCCCA 60.254 55.000 0.00 0.00 0.00 4.37
337 338 0.106669 GGCAGTATTCCCCTTCCCAC 60.107 60.000 0.00 0.00 0.00 4.61
338 339 0.106669 GCAGTATTCCCCTTCCCACC 60.107 60.000 0.00 0.00 0.00 4.61
339 340 1.295020 CAGTATTCCCCTTCCCACCA 58.705 55.000 0.00 0.00 0.00 4.17
340 341 1.064685 CAGTATTCCCCTTCCCACCAC 60.065 57.143 0.00 0.00 0.00 4.16
341 342 1.203570 AGTATTCCCCTTCCCACCACT 60.204 52.381 0.00 0.00 0.00 4.00
342 343 2.046729 AGTATTCCCCTTCCCACCACTA 59.953 50.000 0.00 0.00 0.00 2.74
343 344 2.068831 ATTCCCCTTCCCACCACTAA 57.931 50.000 0.00 0.00 0.00 2.24
344 345 2.068831 TTCCCCTTCCCACCACTAAT 57.931 50.000 0.00 0.00 0.00 1.73
345 346 2.068831 TCCCCTTCCCACCACTAATT 57.931 50.000 0.00 0.00 0.00 1.40
346 347 1.638589 TCCCCTTCCCACCACTAATTG 59.361 52.381 0.00 0.00 0.00 2.32
347 348 1.474330 CCCTTCCCACCACTAATTGC 58.526 55.000 0.00 0.00 0.00 3.56
348 349 1.474330 CCTTCCCACCACTAATTGCC 58.526 55.000 0.00 0.00 0.00 4.52
349 350 1.094785 CTTCCCACCACTAATTGCCG 58.905 55.000 0.00 0.00 0.00 5.69
350 351 0.322997 TTCCCACCACTAATTGCCGG 60.323 55.000 0.00 0.00 0.00 6.13
351 352 1.202099 TCCCACCACTAATTGCCGGA 61.202 55.000 5.05 0.00 0.00 5.14
352 353 0.748005 CCCACCACTAATTGCCGGAG 60.748 60.000 5.05 0.00 0.00 4.63
353 354 1.376609 CCACCACTAATTGCCGGAGC 61.377 60.000 5.05 0.00 40.48 4.70
354 355 1.449601 ACCACTAATTGCCGGAGCG 60.450 57.895 5.05 0.00 44.31 5.03
364 365 4.069232 CCGGAGCGGCAGACAGAA 62.069 66.667 0.00 0.00 41.17 3.02
365 366 2.507992 CGGAGCGGCAGACAGAAG 60.508 66.667 1.45 0.00 0.00 2.85
366 367 2.125350 GGAGCGGCAGACAGAAGG 60.125 66.667 1.45 0.00 0.00 3.46
367 368 2.650116 GGAGCGGCAGACAGAAGGA 61.650 63.158 1.45 0.00 0.00 3.36
368 369 1.293498 GAGCGGCAGACAGAAGGAA 59.707 57.895 1.45 0.00 0.00 3.36
369 370 0.320771 GAGCGGCAGACAGAAGGAAA 60.321 55.000 1.45 0.00 0.00 3.13
370 371 0.321122 AGCGGCAGACAGAAGGAAAG 60.321 55.000 1.45 0.00 0.00 2.62
371 372 0.603975 GCGGCAGACAGAAGGAAAGT 60.604 55.000 0.00 0.00 0.00 2.66
372 373 1.151668 CGGCAGACAGAAGGAAAGTG 58.848 55.000 0.00 0.00 0.00 3.16
373 374 1.270305 CGGCAGACAGAAGGAAAGTGA 60.270 52.381 0.00 0.00 0.00 3.41
374 375 2.806745 CGGCAGACAGAAGGAAAGTGAA 60.807 50.000 0.00 0.00 0.00 3.18
375 376 3.416156 GGCAGACAGAAGGAAAGTGAAT 58.584 45.455 0.00 0.00 0.00 2.57
376 377 3.438434 GGCAGACAGAAGGAAAGTGAATC 59.562 47.826 0.00 0.00 0.00 2.52
377 378 3.438434 GCAGACAGAAGGAAAGTGAATCC 59.562 47.826 0.00 0.00 37.22 3.01
378 379 4.645535 CAGACAGAAGGAAAGTGAATCCA 58.354 43.478 0.00 0.00 39.55 3.41
379 380 4.694509 CAGACAGAAGGAAAGTGAATCCAG 59.305 45.833 0.00 0.00 39.55 3.86
380 381 4.594920 AGACAGAAGGAAAGTGAATCCAGA 59.405 41.667 0.00 0.00 39.55 3.86
381 382 5.072329 AGACAGAAGGAAAGTGAATCCAGAA 59.928 40.000 0.00 0.00 39.55 3.02
382 383 5.885465 ACAGAAGGAAAGTGAATCCAGAAT 58.115 37.500 0.00 0.00 39.55 2.40
383 384 6.310149 ACAGAAGGAAAGTGAATCCAGAATT 58.690 36.000 0.00 0.00 39.55 2.17
384 385 6.779539 ACAGAAGGAAAGTGAATCCAGAATTT 59.220 34.615 0.00 0.00 39.55 1.82
385 386 7.040132 ACAGAAGGAAAGTGAATCCAGAATTTC 60.040 37.037 0.00 0.00 39.55 2.17
386 387 5.886960 AGGAAAGTGAATCCAGAATTTCG 57.113 39.130 0.00 0.00 39.55 3.46
387 388 4.156739 AGGAAAGTGAATCCAGAATTTCGC 59.843 41.667 0.00 0.00 39.55 4.70
388 389 4.415735 GAAAGTGAATCCAGAATTTCGCC 58.584 43.478 0.00 0.00 0.00 5.54
389 390 3.356529 AGTGAATCCAGAATTTCGCCT 57.643 42.857 0.00 0.00 0.00 5.52
390 391 3.012518 AGTGAATCCAGAATTTCGCCTG 58.987 45.455 0.00 0.00 0.00 4.85
391 392 3.009723 GTGAATCCAGAATTTCGCCTGA 58.990 45.455 0.00 0.00 32.37 3.86
392 393 3.064545 GTGAATCCAGAATTTCGCCTGAG 59.935 47.826 0.00 0.00 32.37 3.35
393 394 2.338577 ATCCAGAATTTCGCCTGAGG 57.661 50.000 0.00 0.00 32.37 3.86
394 395 1.275666 TCCAGAATTTCGCCTGAGGA 58.724 50.000 0.65 0.00 32.37 3.71
395 396 1.208052 TCCAGAATTTCGCCTGAGGAG 59.792 52.381 0.65 0.00 32.37 3.69
396 397 1.208052 CCAGAATTTCGCCTGAGGAGA 59.792 52.381 0.65 0.00 32.37 3.71
397 398 2.158842 CCAGAATTTCGCCTGAGGAGAT 60.159 50.000 5.58 0.00 30.42 2.75
398 399 3.129871 CAGAATTTCGCCTGAGGAGATC 58.870 50.000 5.58 0.70 30.42 2.75
399 400 2.131183 GAATTTCGCCTGAGGAGATCG 58.869 52.381 5.58 0.00 30.42 3.69
400 401 1.403814 ATTTCGCCTGAGGAGATCGA 58.596 50.000 5.58 0.00 30.42 3.59
401 402 0.741326 TTTCGCCTGAGGAGATCGAG 59.259 55.000 5.58 0.00 30.42 4.04
402 403 0.394488 TTCGCCTGAGGAGATCGAGT 60.394 55.000 5.58 0.00 30.42 4.18
403 404 1.098129 TCGCCTGAGGAGATCGAGTG 61.098 60.000 0.65 0.00 0.00 3.51
404 405 1.739049 GCCTGAGGAGATCGAGTGG 59.261 63.158 0.65 0.00 0.00 4.00
405 406 0.753479 GCCTGAGGAGATCGAGTGGA 60.753 60.000 0.65 0.00 0.00 4.02
406 407 1.317613 CCTGAGGAGATCGAGTGGAG 58.682 60.000 0.00 0.00 0.00 3.86
407 408 1.317613 CTGAGGAGATCGAGTGGAGG 58.682 60.000 0.00 0.00 0.00 4.30
408 409 0.919710 TGAGGAGATCGAGTGGAGGA 59.080 55.000 0.00 0.00 0.00 3.71
409 410 1.285078 TGAGGAGATCGAGTGGAGGAA 59.715 52.381 0.00 0.00 0.00 3.36
410 411 2.291605 TGAGGAGATCGAGTGGAGGAAA 60.292 50.000 0.00 0.00 0.00 3.13
411 412 2.360801 GAGGAGATCGAGTGGAGGAAAG 59.639 54.545 0.00 0.00 0.00 2.62
412 413 1.202475 GGAGATCGAGTGGAGGAAAGC 60.202 57.143 0.00 0.00 0.00 3.51
413 414 1.754226 GAGATCGAGTGGAGGAAAGCT 59.246 52.381 0.00 0.00 0.00 3.74
414 415 2.167487 GAGATCGAGTGGAGGAAAGCTT 59.833 50.000 0.00 0.00 0.00 3.74
415 416 2.569404 AGATCGAGTGGAGGAAAGCTTT 59.431 45.455 12.53 12.53 0.00 3.51
416 417 2.169832 TCGAGTGGAGGAAAGCTTTG 57.830 50.000 18.30 0.00 0.00 2.77
417 418 0.519077 CGAGTGGAGGAAAGCTTTGC 59.481 55.000 21.86 21.86 0.00 3.68
418 419 0.884514 GAGTGGAGGAAAGCTTTGCC 59.115 55.000 25.04 19.84 0.00 4.52
419 420 0.185901 AGTGGAGGAAAGCTTTGCCA 59.814 50.000 25.04 20.43 0.00 4.92
420 421 1.203100 AGTGGAGGAAAGCTTTGCCAT 60.203 47.619 25.04 9.54 0.00 4.40
421 422 2.041620 AGTGGAGGAAAGCTTTGCCATA 59.958 45.455 25.04 10.18 0.00 2.74
422 423 2.825532 GTGGAGGAAAGCTTTGCCATAA 59.174 45.455 25.04 7.82 0.00 1.90
423 424 2.825532 TGGAGGAAAGCTTTGCCATAAC 59.174 45.455 25.04 12.47 0.00 1.89
424 425 3.092301 GGAGGAAAGCTTTGCCATAACT 58.908 45.455 25.04 7.31 0.00 2.24
425 426 4.263727 TGGAGGAAAGCTTTGCCATAACTA 60.264 41.667 25.04 8.71 0.00 2.24
426 427 4.096532 GGAGGAAAGCTTTGCCATAACTAC 59.903 45.833 25.04 4.56 0.00 2.73
427 428 4.017126 AGGAAAGCTTTGCCATAACTACC 58.983 43.478 25.04 11.85 0.00 3.18
428 429 4.017126 GGAAAGCTTTGCCATAACTACCT 58.983 43.478 18.30 0.00 0.00 3.08
429 430 4.462834 GGAAAGCTTTGCCATAACTACCTT 59.537 41.667 18.30 0.00 0.00 3.50
430 431 5.391312 AAAGCTTTGCCATAACTACCTTG 57.609 39.130 11.80 0.00 0.00 3.61
431 432 2.755103 AGCTTTGCCATAACTACCTTGC 59.245 45.455 0.00 0.00 0.00 4.01
432 433 2.491693 GCTTTGCCATAACTACCTTGCA 59.508 45.455 0.00 0.00 0.00 4.08
433 434 3.056891 GCTTTGCCATAACTACCTTGCAA 60.057 43.478 0.00 0.00 36.98 4.08
434 435 4.737054 CTTTGCCATAACTACCTTGCAAG 58.263 43.478 19.93 19.93 39.55 4.01
435 436 3.712016 TGCCATAACTACCTTGCAAGA 57.288 42.857 28.05 7.89 0.00 3.02
436 437 3.343617 TGCCATAACTACCTTGCAAGAC 58.656 45.455 28.05 4.44 0.00 3.01
437 438 3.244735 TGCCATAACTACCTTGCAAGACA 60.245 43.478 28.05 13.30 0.00 3.41
438 439 3.756434 GCCATAACTACCTTGCAAGACAA 59.244 43.478 28.05 11.14 36.62 3.18
452 453 5.650543 TGCAAGACAAGAAAGAAAAAGACC 58.349 37.500 0.00 0.00 0.00 3.85
453 454 4.735338 GCAAGACAAGAAAGAAAAAGACCG 59.265 41.667 0.00 0.00 0.00 4.79
454 455 5.273944 CAAGACAAGAAAGAAAAAGACCGG 58.726 41.667 0.00 0.00 0.00 5.28
455 456 4.524053 AGACAAGAAAGAAAAAGACCGGT 58.476 39.130 6.92 6.92 0.00 5.28
456 457 4.575236 AGACAAGAAAGAAAAAGACCGGTC 59.425 41.667 27.67 27.67 0.00 4.79
457 458 4.524053 ACAAGAAAGAAAAAGACCGGTCT 58.476 39.130 31.69 31.69 42.75 3.85
458 459 4.335594 ACAAGAAAGAAAAAGACCGGTCTG 59.664 41.667 36.87 21.88 40.36 3.51
459 460 4.417426 AGAAAGAAAAAGACCGGTCTGA 57.583 40.909 36.87 0.00 40.36 3.27
460 461 4.127907 AGAAAGAAAAAGACCGGTCTGAC 58.872 43.478 36.87 25.15 40.36 3.51
461 462 3.840124 AAGAAAAAGACCGGTCTGACT 57.160 42.857 36.87 26.72 40.36 3.41
462 463 3.388345 AGAAAAAGACCGGTCTGACTC 57.612 47.619 36.87 28.70 40.36 3.36
463 464 2.037381 AGAAAAAGACCGGTCTGACTCC 59.963 50.000 36.87 23.11 40.36 3.85
464 465 1.718280 AAAAGACCGGTCTGACTCCT 58.282 50.000 36.87 18.13 40.36 3.69
465 466 1.718280 AAAGACCGGTCTGACTCCTT 58.282 50.000 36.87 22.92 40.36 3.36
466 467 1.258676 AAGACCGGTCTGACTCCTTC 58.741 55.000 36.87 6.15 40.36 3.46
467 468 0.406361 AGACCGGTCTGACTCCTTCT 59.594 55.000 35.89 8.17 38.75 2.85
468 469 0.528470 GACCGGTCTGACTCCTTCTG 59.472 60.000 27.64 0.00 0.00 3.02
469 470 0.112606 ACCGGTCTGACTCCTTCTGA 59.887 55.000 0.00 0.00 0.00 3.27
471 472 0.172352 CGGTCTGACTCCTTCTGAGC 59.828 60.000 7.85 0.00 45.61 4.26
472 473 0.172352 GGTCTGACTCCTTCTGAGCG 59.828 60.000 7.85 0.00 45.61 5.03
473 474 0.885196 GTCTGACTCCTTCTGAGCGT 59.115 55.000 0.00 0.00 45.61 5.07
474 475 0.884514 TCTGACTCCTTCTGAGCGTG 59.115 55.000 0.00 0.00 45.61 5.34
475 476 0.108898 CTGACTCCTTCTGAGCGTGG 60.109 60.000 0.00 0.00 45.61 4.94
476 477 0.539669 TGACTCCTTCTGAGCGTGGA 60.540 55.000 0.00 0.00 45.61 4.02
510 511 9.744468 AAAAATCTTCGCTTACTTAACACAAAT 57.256 25.926 0.00 0.00 0.00 2.32
511 512 9.744468 AAAATCTTCGCTTACTTAACACAAATT 57.256 25.926 0.00 0.00 0.00 1.82
514 515 9.821662 ATCTTCGCTTACTTAACACAAATTAAC 57.178 29.630 0.00 0.00 0.00 2.01
515 516 9.048446 TCTTCGCTTACTTAACACAAATTAACT 57.952 29.630 0.00 0.00 0.00 2.24
518 519 9.480053 TCGCTTACTTAACACAAATTAACTACT 57.520 29.630 0.00 0.00 0.00 2.57
527 528 7.272037 ACACAAATTAACTACTTTGAGGTGG 57.728 36.000 6.32 0.00 36.19 4.61
528 529 6.831868 ACACAAATTAACTACTTTGAGGTGGT 59.168 34.615 6.32 0.00 36.19 4.16
529 530 7.012989 ACACAAATTAACTACTTTGAGGTGGTC 59.987 37.037 6.32 0.00 36.19 4.02
530 531 7.228706 CACAAATTAACTACTTTGAGGTGGTCT 59.771 37.037 6.32 0.00 36.19 3.85
531 532 7.228706 ACAAATTAACTACTTTGAGGTGGTCTG 59.771 37.037 6.32 0.00 36.19 3.51
532 533 5.881923 TTAACTACTTTGAGGTGGTCTGT 57.118 39.130 0.00 0.00 30.75 3.41
533 534 4.338379 AACTACTTTGAGGTGGTCTGTC 57.662 45.455 0.00 0.00 30.75 3.51
534 535 3.305720 ACTACTTTGAGGTGGTCTGTCA 58.694 45.455 0.00 0.00 0.00 3.58
535 536 3.709653 ACTACTTTGAGGTGGTCTGTCAA 59.290 43.478 0.00 0.00 0.00 3.18
536 537 3.644966 ACTTTGAGGTGGTCTGTCAAA 57.355 42.857 0.00 0.00 37.75 2.69
537 538 3.963129 ACTTTGAGGTGGTCTGTCAAAA 58.037 40.909 0.00 0.00 39.16 2.44
538 539 4.340617 ACTTTGAGGTGGTCTGTCAAAAA 58.659 39.130 0.00 0.00 39.16 1.94
560 561 2.457366 AACTACTTTGAGGTGGAGCG 57.543 50.000 0.00 0.00 0.00 5.03
561 562 0.608640 ACTACTTTGAGGTGGAGCGG 59.391 55.000 0.00 0.00 0.00 5.52
562 563 0.895530 CTACTTTGAGGTGGAGCGGA 59.104 55.000 0.00 0.00 0.00 5.54
563 564 1.482593 CTACTTTGAGGTGGAGCGGAT 59.517 52.381 0.00 0.00 0.00 4.18
564 565 1.568504 ACTTTGAGGTGGAGCGGATA 58.431 50.000 0.00 0.00 0.00 2.59
565 566 1.906574 ACTTTGAGGTGGAGCGGATAA 59.093 47.619 0.00 0.00 0.00 1.75
566 567 2.304761 ACTTTGAGGTGGAGCGGATAAA 59.695 45.455 0.00 0.00 0.00 1.40
567 568 3.244770 ACTTTGAGGTGGAGCGGATAAAA 60.245 43.478 0.00 0.00 0.00 1.52
568 569 3.426787 TTGAGGTGGAGCGGATAAAAA 57.573 42.857 0.00 0.00 0.00 1.94
592 593 6.731292 ATGGGTTAATTATCCTTTTGCTCC 57.269 37.500 11.51 0.00 0.00 4.70
666 667 3.760035 CCCTAGTCCGTGCGCACT 61.760 66.667 35.27 20.86 0.00 4.40
698 699 2.852431 GAACTCTGCCGTCTCCGTCG 62.852 65.000 0.00 0.00 0.00 5.12
882 883 2.892334 GCGACAAAGAGCACGGCAA 61.892 57.895 0.00 0.00 0.00 4.52
963 968 0.978146 GGGAAGCTAGCAGTGGAGGA 60.978 60.000 18.83 0.00 0.00 3.71
966 971 0.900647 AAGCTAGCAGTGGAGGACGT 60.901 55.000 18.83 0.00 0.00 4.34
1193 1199 2.142319 GGCAATTGCACCATTTTCGTT 58.858 42.857 30.32 0.00 44.36 3.85
1504 1511 5.329399 ACTTTTGGGCATTTGTAGGTATGA 58.671 37.500 0.00 0.00 0.00 2.15
1513 1520 6.094048 GGCATTTGTAGGTATGATAATCGCAT 59.906 38.462 0.00 0.00 0.00 4.73
1614 1621 9.198475 TCCACCTAGTTTAAATGTTGGTTAAAA 57.802 29.630 0.00 0.00 33.45 1.52
1755 1822 1.619827 CTGCTCTTGGGCCAAATTCAA 59.380 47.619 21.28 4.40 0.00 2.69
1758 1825 2.037641 GCTCTTGGGCCAAATTCAAAGT 59.962 45.455 21.28 0.00 0.00 2.66
1773 1840 1.537202 CAAAGTGTAGAGCCAAGTGCC 59.463 52.381 0.00 0.00 42.71 5.01
2158 2227 2.058675 CAACTGGGGACTCGAACCT 58.941 57.895 7.98 0.00 0.00 3.50
2188 2257 1.288335 TGGGTTTGTGGTGTTTAGGGT 59.712 47.619 0.00 0.00 0.00 4.34
2385 2459 6.252967 TGAAAATGTATGTTGCACTACCAG 57.747 37.500 0.00 0.00 0.00 4.00
2416 2490 2.037251 GTCAGAGTGGCACTTGGTCTAA 59.963 50.000 22.98 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.312426 CACAAAGACTTCTAGGCTGTTATCAG 59.688 42.308 0.00 0.00 43.87 2.90
2 3 6.166279 CACAAAGACTTCTAGGCTGTTATCA 58.834 40.000 0.00 0.00 30.77 2.15
3 4 5.582665 CCACAAAGACTTCTAGGCTGTTATC 59.417 44.000 0.00 0.00 30.77 1.75
5 6 4.591498 TCCACAAAGACTTCTAGGCTGTTA 59.409 41.667 0.00 0.00 30.77 2.41
6 7 3.391296 TCCACAAAGACTTCTAGGCTGTT 59.609 43.478 0.00 0.00 30.77 3.16
7 8 2.972713 TCCACAAAGACTTCTAGGCTGT 59.027 45.455 0.00 0.00 30.77 4.40
8 9 3.330267 GTCCACAAAGACTTCTAGGCTG 58.670 50.000 0.00 0.00 30.77 4.85
9 10 2.028930 CGTCCACAAAGACTTCTAGGCT 60.029 50.000 0.00 0.00 32.54 4.58
10 11 2.288886 ACGTCCACAAAGACTTCTAGGC 60.289 50.000 0.00 0.00 34.46 3.93
11 12 3.318017 CACGTCCACAAAGACTTCTAGG 58.682 50.000 0.00 0.00 34.46 3.02
12 13 2.731976 GCACGTCCACAAAGACTTCTAG 59.268 50.000 0.00 0.00 34.46 2.43
13 14 2.547218 GGCACGTCCACAAAGACTTCTA 60.547 50.000 0.00 0.00 34.46 2.10
14 15 1.583054 GCACGTCCACAAAGACTTCT 58.417 50.000 0.00 0.00 34.46 2.85
15 16 0.586802 GGCACGTCCACAAAGACTTC 59.413 55.000 0.00 0.00 34.46 3.01
16 17 0.818040 GGGCACGTCCACAAAGACTT 60.818 55.000 6.41 0.00 36.21 3.01
17 18 1.227853 GGGCACGTCCACAAAGACT 60.228 57.895 6.41 0.00 36.21 3.24
18 19 2.258726 GGGGCACGTCCACAAAGAC 61.259 63.158 6.41 0.00 38.47 3.01
19 20 1.122632 TAGGGGCACGTCCACAAAGA 61.123 55.000 8.67 0.00 42.23 2.52
20 21 0.250553 TTAGGGGCACGTCCACAAAG 60.251 55.000 8.67 0.00 42.23 2.77
21 22 0.250553 CTTAGGGGCACGTCCACAAA 60.251 55.000 8.67 0.00 42.23 2.83
22 23 1.373435 CTTAGGGGCACGTCCACAA 59.627 57.895 8.67 1.75 42.23 3.33
23 24 2.589157 CCTTAGGGGCACGTCCACA 61.589 63.158 8.67 0.00 42.23 4.17
24 25 2.267961 CCTTAGGGGCACGTCCAC 59.732 66.667 6.41 2.76 39.08 4.02
25 26 2.120940 TCCTTAGGGGCACGTCCA 59.879 61.111 0.00 0.00 36.21 4.02
26 27 2.582978 GTCCTTAGGGGCACGTCC 59.417 66.667 0.00 0.00 37.14 4.79
27 28 1.833787 TTGGTCCTTAGGGGCACGTC 61.834 60.000 0.00 0.00 39.39 4.34
28 29 1.205460 ATTGGTCCTTAGGGGCACGT 61.205 55.000 0.00 0.00 39.39 4.49
29 30 0.034477 AATTGGTCCTTAGGGGCACG 60.034 55.000 0.00 0.00 39.39 5.34
30 31 1.685180 GGAATTGGTCCTTAGGGGCAC 60.685 57.143 0.00 0.00 43.98 5.01
31 32 0.629058 GGAATTGGTCCTTAGGGGCA 59.371 55.000 0.00 0.00 43.98 5.36
32 33 0.106167 GGGAATTGGTCCTTAGGGGC 60.106 60.000 0.00 0.00 46.92 5.80
33 34 1.215423 CAGGGAATTGGTCCTTAGGGG 59.785 57.143 0.00 0.00 46.92 4.79
34 35 1.215423 CCAGGGAATTGGTCCTTAGGG 59.785 57.143 0.00 0.00 46.92 3.53
35 36 1.215423 CCCAGGGAATTGGTCCTTAGG 59.785 57.143 0.00 0.00 46.92 2.69
36 37 1.215423 CCCCAGGGAATTGGTCCTTAG 59.785 57.143 7.25 0.00 46.92 2.18
37 38 1.304891 CCCCAGGGAATTGGTCCTTA 58.695 55.000 7.25 0.00 46.92 2.69
38 39 2.096168 CCCCAGGGAATTGGTCCTT 58.904 57.895 7.25 0.00 46.92 3.36
39 40 2.626467 GCCCCAGGGAATTGGTCCT 61.626 63.158 7.25 0.00 46.92 3.85
41 42 2.042944 GGCCCCAGGGAATTGGTC 60.043 66.667 7.25 0.00 36.45 4.02
42 43 4.060667 CGGCCCCAGGGAATTGGT 62.061 66.667 7.25 0.00 36.45 3.67
43 44 2.624674 CTACGGCCCCAGGGAATTGG 62.625 65.000 7.25 0.00 37.50 3.16
44 45 1.152963 CTACGGCCCCAGGGAATTG 60.153 63.158 7.25 0.00 37.50 2.32
45 46 1.618447 ACTACGGCCCCAGGGAATT 60.618 57.895 7.25 0.00 37.50 2.17
46 47 2.042261 ACTACGGCCCCAGGGAAT 59.958 61.111 7.25 0.00 37.50 3.01
47 48 2.686106 GACTACGGCCCCAGGGAA 60.686 66.667 7.25 0.00 37.50 3.97
50 51 3.387947 AACGACTACGGCCCCAGG 61.388 66.667 0.00 0.00 44.46 4.45
51 52 2.125673 CAACGACTACGGCCCCAG 60.126 66.667 0.00 0.00 44.46 4.45
52 53 2.509651 AACAACGACTACGGCCCCA 61.510 57.895 0.00 0.00 44.46 4.96
53 54 2.030958 CAACAACGACTACGGCCCC 61.031 63.158 0.00 0.00 44.46 5.80
54 55 0.881600 AACAACAACGACTACGGCCC 60.882 55.000 0.00 0.00 44.46 5.80
55 56 0.233848 CAACAACAACGACTACGGCC 59.766 55.000 0.00 0.00 44.46 6.13
56 57 1.210870 TCAACAACAACGACTACGGC 58.789 50.000 0.00 0.00 44.46 5.68
57 58 2.348218 GCTTCAACAACAACGACTACGG 60.348 50.000 0.00 0.00 44.46 4.02
58 59 2.348218 GGCTTCAACAACAACGACTACG 60.348 50.000 0.00 0.00 45.75 3.51
59 60 2.870411 AGGCTTCAACAACAACGACTAC 59.130 45.455 0.00 0.00 0.00 2.73
60 61 3.188159 AGGCTTCAACAACAACGACTA 57.812 42.857 0.00 0.00 0.00 2.59
61 62 2.038387 AGGCTTCAACAACAACGACT 57.962 45.000 0.00 0.00 0.00 4.18
62 63 2.096819 TGAAGGCTTCAACAACAACGAC 59.903 45.455 26.78 0.00 36.59 4.34
63 64 2.360844 TGAAGGCTTCAACAACAACGA 58.639 42.857 26.78 0.00 36.59 3.85
64 65 2.842208 TGAAGGCTTCAACAACAACG 57.158 45.000 26.78 0.00 36.59 4.10
73 74 1.480545 TCGGATCGATTGAAGGCTTCA 59.519 47.619 25.38 25.38 38.04 3.02
74 75 2.225068 TCGGATCGATTGAAGGCTTC 57.775 50.000 20.27 20.27 0.00 3.86
75 76 2.168521 TCTTCGGATCGATTGAAGGCTT 59.831 45.455 27.30 0.00 39.59 4.35
76 77 1.757118 TCTTCGGATCGATTGAAGGCT 59.243 47.619 27.30 0.00 39.59 4.58
77 78 2.225068 TCTTCGGATCGATTGAAGGC 57.775 50.000 27.30 6.31 39.59 4.35
78 79 4.447054 CAGATTCTTCGGATCGATTGAAGG 59.553 45.833 27.30 15.27 39.59 3.46
79 80 4.447054 CCAGATTCTTCGGATCGATTGAAG 59.553 45.833 24.45 24.45 40.30 3.02
80 81 4.371786 CCAGATTCTTCGGATCGATTGAA 58.628 43.478 0.00 6.61 35.23 2.69
81 82 3.800261 GCCAGATTCTTCGGATCGATTGA 60.800 47.826 0.00 0.00 35.23 2.57
82 83 2.478134 GCCAGATTCTTCGGATCGATTG 59.522 50.000 0.00 0.00 35.23 2.67
83 84 2.103094 TGCCAGATTCTTCGGATCGATT 59.897 45.455 0.00 0.00 35.23 3.34
84 85 1.688735 TGCCAGATTCTTCGGATCGAT 59.311 47.619 0.00 0.00 35.23 3.59
85 86 1.111277 TGCCAGATTCTTCGGATCGA 58.889 50.000 0.00 0.00 0.00 3.59
86 87 1.212616 GTGCCAGATTCTTCGGATCG 58.787 55.000 0.00 0.00 0.00 3.69
87 88 1.134401 TGGTGCCAGATTCTTCGGATC 60.134 52.381 0.00 0.00 0.00 3.36
88 89 0.911769 TGGTGCCAGATTCTTCGGAT 59.088 50.000 0.00 0.00 0.00 4.18
89 90 0.690192 TTGGTGCCAGATTCTTCGGA 59.310 50.000 0.00 0.00 0.00 4.55
90 91 1.533625 TTTGGTGCCAGATTCTTCGG 58.466 50.000 0.00 0.00 0.00 4.30
91 92 6.808008 ATATATTTGGTGCCAGATTCTTCG 57.192 37.500 0.00 0.00 0.00 3.79
92 93 8.607459 CGATATATATTTGGTGCCAGATTCTTC 58.393 37.037 0.00 0.00 0.00 2.87
93 94 8.103305 ACGATATATATTTGGTGCCAGATTCTT 58.897 33.333 0.00 0.00 0.00 2.52
94 95 7.624549 ACGATATATATTTGGTGCCAGATTCT 58.375 34.615 0.00 0.00 0.00 2.40
95 96 7.549134 TGACGATATATATTTGGTGCCAGATTC 59.451 37.037 0.00 0.00 0.00 2.52
96 97 7.394016 TGACGATATATATTTGGTGCCAGATT 58.606 34.615 0.00 0.00 0.00 2.40
97 98 6.946340 TGACGATATATATTTGGTGCCAGAT 58.054 36.000 0.00 0.00 0.00 2.90
98 99 6.353404 TGACGATATATATTTGGTGCCAGA 57.647 37.500 0.00 0.00 0.00 3.86
99 100 6.019559 CGATGACGATATATATTTGGTGCCAG 60.020 42.308 0.00 0.00 42.66 4.85
100 101 5.810074 CGATGACGATATATATTTGGTGCCA 59.190 40.000 0.00 0.00 42.66 4.92
101 102 5.276868 GCGATGACGATATATATTTGGTGCC 60.277 44.000 0.00 0.00 42.66 5.01
102 103 5.554510 CGCGATGACGATATATATTTGGTGC 60.555 44.000 0.00 0.00 42.66 5.01
103 104 5.515270 ACGCGATGACGATATATATTTGGTG 59.485 40.000 15.93 0.00 42.66 4.17
104 105 5.647589 ACGCGATGACGATATATATTTGGT 58.352 37.500 15.93 0.00 42.66 3.67
105 106 6.129794 CGTACGCGATGACGATATATATTTGG 60.130 42.308 15.93 0.00 41.60 3.28
106 107 6.608800 GCGTACGCGATGACGATATATATTTG 60.609 42.308 26.17 0.00 41.60 2.32
107 108 5.394613 GCGTACGCGATGACGATATATATTT 59.605 40.000 26.17 0.00 41.60 1.40
108 109 4.902448 GCGTACGCGATGACGATATATATT 59.098 41.667 26.17 0.00 41.60 1.28
109 110 4.025480 TGCGTACGCGATGACGATATATAT 60.025 41.667 32.65 0.00 45.51 0.86
110 111 3.306703 TGCGTACGCGATGACGATATATA 59.693 43.478 32.65 9.34 45.51 0.86
111 112 2.094734 TGCGTACGCGATGACGATATAT 59.905 45.455 32.65 0.39 45.51 0.86
112 113 1.460359 TGCGTACGCGATGACGATATA 59.540 47.619 32.65 10.01 45.51 0.86
113 114 0.236449 TGCGTACGCGATGACGATAT 59.764 50.000 32.65 1.59 45.51 1.63
114 115 0.236449 ATGCGTACGCGATGACGATA 59.764 50.000 32.65 14.30 45.51 2.92
115 116 0.997226 GATGCGTACGCGATGACGAT 60.997 55.000 32.65 19.81 45.51 3.73
116 117 1.653232 GATGCGTACGCGATGACGA 60.653 57.895 32.65 15.80 45.51 4.20
117 118 2.830506 GATGCGTACGCGATGACG 59.169 61.111 32.65 20.06 45.51 4.35
118 119 1.937846 ACGATGCGTACGCGATGAC 60.938 57.895 32.65 20.07 45.51 3.06
119 120 1.937362 CACGATGCGTACGCGATGA 60.937 57.895 32.65 17.70 45.51 2.92
120 121 1.856013 CTCACGATGCGTACGCGATG 61.856 60.000 32.65 25.66 45.51 3.84
121 122 1.654440 CTCACGATGCGTACGCGAT 60.654 57.895 32.65 25.78 45.51 4.58
122 123 2.277057 CTCACGATGCGTACGCGA 60.277 61.111 32.65 22.26 45.51 5.87
123 124 3.312504 CCTCACGATGCGTACGCG 61.313 66.667 32.65 21.87 45.51 6.01
124 125 1.515519 TTCCTCACGATGCGTACGC 60.516 57.895 32.49 32.49 38.32 4.42
125 126 1.138047 GGTTCCTCACGATGCGTACG 61.138 60.000 11.84 11.84 38.32 3.67
126 127 0.804933 GGGTTCCTCACGATGCGTAC 60.805 60.000 0.00 0.00 38.32 3.67
127 128 0.968901 AGGGTTCCTCACGATGCGTA 60.969 55.000 0.00 0.00 38.32 4.42
128 129 0.968901 TAGGGTTCCTCACGATGCGT 60.969 55.000 0.00 0.00 36.23 5.24
129 130 0.174845 TTAGGGTTCCTCACGATGCG 59.825 55.000 0.00 0.00 34.61 4.73
130 131 1.653151 GTTAGGGTTCCTCACGATGC 58.347 55.000 0.00 0.00 34.61 3.91
131 132 1.831736 AGGTTAGGGTTCCTCACGATG 59.168 52.381 0.00 0.00 34.61 3.84
132 133 2.108970 GAGGTTAGGGTTCCTCACGAT 58.891 52.381 6.37 0.00 46.59 3.73
133 134 1.553706 GAGGTTAGGGTTCCTCACGA 58.446 55.000 6.37 0.00 46.59 4.35
137 138 1.521141 GGCGAGGTTAGGGTTCCTC 59.479 63.158 0.00 0.00 44.65 3.71
138 139 2.356780 CGGCGAGGTTAGGGTTCCT 61.357 63.158 0.00 0.00 37.71 3.36
139 140 2.186125 CGGCGAGGTTAGGGTTCC 59.814 66.667 0.00 0.00 0.00 3.62
140 141 2.510918 GCGGCGAGGTTAGGGTTC 60.511 66.667 12.98 0.00 0.00 3.62
141 142 4.091939 GGCGGCGAGGTTAGGGTT 62.092 66.667 12.98 0.00 0.00 4.11
144 145 4.530857 CAGGGCGGCGAGGTTAGG 62.531 72.222 12.98 0.00 0.00 2.69
145 146 3.432051 CTCAGGGCGGCGAGGTTAG 62.432 68.421 12.98 0.00 0.00 2.34
146 147 3.458163 CTCAGGGCGGCGAGGTTA 61.458 66.667 12.98 0.00 0.00 2.85
151 152 3.949885 TAACTCCTCAGGGCGGCGA 62.950 63.158 12.98 0.00 0.00 5.54
152 153 3.014085 TTAACTCCTCAGGGCGGCG 62.014 63.158 0.51 0.51 0.00 6.46
153 154 1.449778 GTTAACTCCTCAGGGCGGC 60.450 63.158 0.00 0.00 0.00 6.53
154 155 0.108138 CTGTTAACTCCTCAGGGCGG 60.108 60.000 7.22 0.00 0.00 6.13
155 156 0.895530 TCTGTTAACTCCTCAGGGCG 59.104 55.000 7.22 0.00 0.00 6.13
156 157 3.418684 TTTCTGTTAACTCCTCAGGGC 57.581 47.619 7.22 0.00 0.00 5.19
157 158 5.428184 AGATTTCTGTTAACTCCTCAGGG 57.572 43.478 7.22 0.00 0.00 4.45
158 159 6.037098 CGTAGATTTCTGTTAACTCCTCAGG 58.963 44.000 7.22 0.00 0.00 3.86
159 160 6.853720 TCGTAGATTTCTGTTAACTCCTCAG 58.146 40.000 7.22 0.00 0.00 3.35
160 161 6.829229 TCGTAGATTTCTGTTAACTCCTCA 57.171 37.500 7.22 0.00 0.00 3.86
161 162 6.697892 CCATCGTAGATTTCTGTTAACTCCTC 59.302 42.308 7.22 0.00 45.12 3.71
162 163 6.380274 TCCATCGTAGATTTCTGTTAACTCCT 59.620 38.462 7.22 0.00 45.12 3.69
163 164 6.570692 TCCATCGTAGATTTCTGTTAACTCC 58.429 40.000 7.22 0.00 45.12 3.85
164 165 6.199342 GCTCCATCGTAGATTTCTGTTAACTC 59.801 42.308 7.22 0.00 45.12 3.01
165 166 6.043411 GCTCCATCGTAGATTTCTGTTAACT 58.957 40.000 7.22 0.00 45.12 2.24
166 167 6.043411 AGCTCCATCGTAGATTTCTGTTAAC 58.957 40.000 0.00 0.00 45.12 2.01
167 168 6.222038 AGCTCCATCGTAGATTTCTGTTAA 57.778 37.500 0.00 0.00 45.12 2.01
168 169 5.221263 GGAGCTCCATCGTAGATTTCTGTTA 60.221 44.000 28.43 0.00 45.12 2.41
169 170 4.442192 GGAGCTCCATCGTAGATTTCTGTT 60.442 45.833 28.43 0.00 45.12 3.16
170 171 3.068873 GGAGCTCCATCGTAGATTTCTGT 59.931 47.826 28.43 0.00 45.12 3.41
171 172 3.068732 TGGAGCTCCATCGTAGATTTCTG 59.931 47.826 32.00 0.00 45.12 3.02
172 173 3.300388 TGGAGCTCCATCGTAGATTTCT 58.700 45.455 32.00 0.00 45.12 2.52
173 174 3.735237 TGGAGCTCCATCGTAGATTTC 57.265 47.619 32.00 0.74 45.12 2.17
185 186 2.238395 GGGATGGATTAGATGGAGCTCC 59.762 54.545 26.78 26.78 0.00 4.70
186 187 2.093764 CGGGATGGATTAGATGGAGCTC 60.094 54.545 4.71 4.71 0.00 4.09
187 188 1.905215 CGGGATGGATTAGATGGAGCT 59.095 52.381 0.00 0.00 0.00 4.09
188 189 1.902508 TCGGGATGGATTAGATGGAGC 59.097 52.381 0.00 0.00 0.00 4.70
189 190 2.899900 TGTCGGGATGGATTAGATGGAG 59.100 50.000 0.00 0.00 0.00 3.86
190 191 2.899900 CTGTCGGGATGGATTAGATGGA 59.100 50.000 0.00 0.00 0.00 3.41
191 192 2.899900 TCTGTCGGGATGGATTAGATGG 59.100 50.000 0.00 0.00 0.00 3.51
192 193 4.221482 TCATCTGTCGGGATGGATTAGATG 59.779 45.833 0.00 0.00 42.22 2.90
193 194 4.420206 TCATCTGTCGGGATGGATTAGAT 58.580 43.478 11.72 0.00 42.22 1.98
194 195 3.844640 TCATCTGTCGGGATGGATTAGA 58.155 45.455 11.72 0.00 42.22 2.10
195 196 4.039730 AGTTCATCTGTCGGGATGGATTAG 59.960 45.833 11.72 0.00 42.22 1.73
196 197 3.967326 AGTTCATCTGTCGGGATGGATTA 59.033 43.478 11.72 0.00 42.22 1.75
197 198 2.774234 AGTTCATCTGTCGGGATGGATT 59.226 45.455 11.72 1.20 42.22 3.01
198 199 2.366916 GAGTTCATCTGTCGGGATGGAT 59.633 50.000 11.72 0.00 42.22 3.41
199 200 1.757118 GAGTTCATCTGTCGGGATGGA 59.243 52.381 11.72 3.48 42.22 3.41
200 201 1.536922 CGAGTTCATCTGTCGGGATGG 60.537 57.143 11.72 0.00 42.22 3.51
201 202 1.405463 TCGAGTTCATCTGTCGGGATG 59.595 52.381 7.34 7.34 43.01 3.51
202 203 1.678627 CTCGAGTTCATCTGTCGGGAT 59.321 52.381 3.62 0.00 36.22 3.85
203 204 1.095600 CTCGAGTTCATCTGTCGGGA 58.904 55.000 3.62 0.00 36.22 5.14
204 205 0.101399 CCTCGAGTTCATCTGTCGGG 59.899 60.000 12.31 0.00 34.43 5.14
205 206 1.064803 CTCCTCGAGTTCATCTGTCGG 59.935 57.143 12.31 0.00 34.43 4.79
206 207 1.064803 CCTCCTCGAGTTCATCTGTCG 59.935 57.143 12.31 0.00 34.98 4.35
207 208 1.202359 GCCTCCTCGAGTTCATCTGTC 60.202 57.143 12.31 0.00 0.00 3.51
208 209 0.820871 GCCTCCTCGAGTTCATCTGT 59.179 55.000 12.31 0.00 0.00 3.41
209 210 1.066908 GAGCCTCCTCGAGTTCATCTG 59.933 57.143 12.31 0.00 0.00 2.90
210 211 1.398692 GAGCCTCCTCGAGTTCATCT 58.601 55.000 12.31 1.50 0.00 2.90
211 212 3.957383 GAGCCTCCTCGAGTTCATC 57.043 57.895 12.31 0.00 0.00 2.92
228 229 1.645704 CTTCTTCGAGTCGGCTCCGA 61.646 60.000 12.25 9.42 46.87 4.55
229 230 1.226435 CTTCTTCGAGTCGGCTCCG 60.226 63.158 12.25 7.00 38.49 4.63
230 231 0.526662 TTCTTCTTCGAGTCGGCTCC 59.473 55.000 12.25 0.00 38.49 4.70
231 232 1.902840 CTTCTTCTTCGAGTCGGCTC 58.097 55.000 13.54 7.05 38.35 4.70
232 233 0.109039 GCTTCTTCTTCGAGTCGGCT 60.109 55.000 13.54 0.00 0.00 5.52
233 234 0.388649 TGCTTCTTCTTCGAGTCGGC 60.389 55.000 13.54 5.95 0.00 5.54
234 235 2.189342 GATGCTTCTTCTTCGAGTCGG 58.811 52.381 13.54 0.00 0.00 4.79
235 236 1.843149 CGATGCTTCTTCTTCGAGTCG 59.157 52.381 6.09 6.09 36.21 4.18
236 237 1.586123 GCGATGCTTCTTCTTCGAGTC 59.414 52.381 0.00 0.00 36.21 3.36
237 238 1.067565 TGCGATGCTTCTTCTTCGAGT 60.068 47.619 0.00 0.00 36.21 4.18
238 239 1.633561 TGCGATGCTTCTTCTTCGAG 58.366 50.000 0.00 0.00 36.21 4.04
239 240 2.078849 TTGCGATGCTTCTTCTTCGA 57.921 45.000 0.00 0.00 36.21 3.71
240 241 2.286067 GGATTGCGATGCTTCTTCTTCG 60.286 50.000 0.00 0.00 36.90 3.79
241 242 2.286067 CGGATTGCGATGCTTCTTCTTC 60.286 50.000 3.73 0.00 0.00 2.87
242 243 1.667724 CGGATTGCGATGCTTCTTCTT 59.332 47.619 3.73 0.00 0.00 2.52
243 244 1.293924 CGGATTGCGATGCTTCTTCT 58.706 50.000 3.73 0.00 0.00 2.85
244 245 1.004504 GACGGATTGCGATGCTTCTTC 60.005 52.381 4.05 0.00 0.00 2.87
245 246 1.009829 GACGGATTGCGATGCTTCTT 58.990 50.000 4.05 0.00 0.00 2.52
246 247 0.811616 GGACGGATTGCGATGCTTCT 60.812 55.000 11.05 0.00 0.00 2.85
247 248 1.643832 GGACGGATTGCGATGCTTC 59.356 57.895 4.05 3.65 0.00 3.86
248 249 2.173669 CGGACGGATTGCGATGCTT 61.174 57.895 4.05 0.00 42.80 3.91
249 250 2.586079 CGGACGGATTGCGATGCT 60.586 61.111 4.05 0.00 42.80 3.79
250 251 2.584970 TCGGACGGATTGCGATGC 60.585 61.111 4.05 0.00 44.07 3.91
254 255 2.586079 ATGCTCGGACGGATTGCG 60.586 61.111 0.00 0.00 41.20 4.85
255 256 1.521457 TGATGCTCGGACGGATTGC 60.521 57.895 0.00 0.00 0.00 3.56
256 257 1.154205 GGTGATGCTCGGACGGATTG 61.154 60.000 0.00 0.00 0.00 2.67
257 258 1.144057 GGTGATGCTCGGACGGATT 59.856 57.895 0.00 0.00 0.00 3.01
258 259 2.797278 GGGTGATGCTCGGACGGAT 61.797 63.158 0.00 0.00 0.00 4.18
259 260 3.458163 GGGTGATGCTCGGACGGA 61.458 66.667 0.00 0.00 0.00 4.69
260 261 4.530857 GGGGTGATGCTCGGACGG 62.531 72.222 0.00 0.00 0.00 4.79
261 262 3.461773 AGGGGTGATGCTCGGACG 61.462 66.667 0.00 0.00 0.00 4.79
262 263 2.187946 CAGGGGTGATGCTCGGAC 59.812 66.667 0.00 0.00 0.00 4.79
263 264 3.785859 GCAGGGGTGATGCTCGGA 61.786 66.667 0.00 0.00 40.59 4.55
265 266 4.147449 TCGCAGGGGTGATGCTCG 62.147 66.667 0.00 0.00 41.61 5.03
266 267 2.202987 CTCGCAGGGGTGATGCTC 60.203 66.667 0.00 0.00 41.61 4.26
267 268 3.790437 CCTCGCAGGGGTGATGCT 61.790 66.667 0.00 0.00 41.61 3.79
268 269 3.785859 TCCTCGCAGGGGTGATGC 61.786 66.667 2.86 0.00 40.35 3.91
269 270 1.043116 TAGTCCTCGCAGGGGTGATG 61.043 60.000 2.86 0.00 35.59 3.07
270 271 0.325296 TTAGTCCTCGCAGGGGTGAT 60.325 55.000 2.86 0.00 35.59 3.06
271 272 0.325296 ATTAGTCCTCGCAGGGGTGA 60.325 55.000 2.86 0.00 35.59 4.02
272 273 0.105039 GATTAGTCCTCGCAGGGGTG 59.895 60.000 2.86 0.00 35.59 4.61
273 274 1.049289 GGATTAGTCCTCGCAGGGGT 61.049 60.000 0.00 0.00 41.60 4.95
274 275 1.749033 GGATTAGTCCTCGCAGGGG 59.251 63.158 0.00 0.00 41.60 4.79
288 289 7.774625 GCTCCGTCTAGTATATAGGTTAGGATT 59.225 40.741 0.00 0.00 0.00 3.01
289 290 7.092533 TGCTCCGTCTAGTATATAGGTTAGGAT 60.093 40.741 0.00 0.00 0.00 3.24
290 291 6.214208 TGCTCCGTCTAGTATATAGGTTAGGA 59.786 42.308 0.00 0.00 0.00 2.94
291 292 6.413052 TGCTCCGTCTAGTATATAGGTTAGG 58.587 44.000 0.00 0.00 0.00 2.69
292 293 7.329499 TCTGCTCCGTCTAGTATATAGGTTAG 58.671 42.308 0.00 0.00 0.00 2.34
293 294 7.250032 TCTGCTCCGTCTAGTATATAGGTTA 57.750 40.000 0.00 0.00 0.00 2.85
294 295 6.124316 TCTGCTCCGTCTAGTATATAGGTT 57.876 41.667 0.00 0.00 0.00 3.50
295 296 5.338544 CCTCTGCTCCGTCTAGTATATAGGT 60.339 48.000 0.00 0.00 0.00 3.08
296 297 5.120399 CCTCTGCTCCGTCTAGTATATAGG 58.880 50.000 0.00 0.00 0.00 2.57
297 298 4.573201 GCCTCTGCTCCGTCTAGTATATAG 59.427 50.000 0.00 0.00 33.53 1.31
298 299 4.019591 TGCCTCTGCTCCGTCTAGTATATA 60.020 45.833 0.00 0.00 38.71 0.86
299 300 3.244946 TGCCTCTGCTCCGTCTAGTATAT 60.245 47.826 0.00 0.00 38.71 0.86
300 301 2.105993 TGCCTCTGCTCCGTCTAGTATA 59.894 50.000 0.00 0.00 38.71 1.47
301 302 1.133761 TGCCTCTGCTCCGTCTAGTAT 60.134 52.381 0.00 0.00 38.71 2.12
302 303 0.255033 TGCCTCTGCTCCGTCTAGTA 59.745 55.000 0.00 0.00 38.71 1.82
303 304 1.000771 TGCCTCTGCTCCGTCTAGT 60.001 57.895 0.00 0.00 38.71 2.57
304 305 1.034838 ACTGCCTCTGCTCCGTCTAG 61.035 60.000 0.00 0.00 38.71 2.43
305 306 0.255033 TACTGCCTCTGCTCCGTCTA 59.745 55.000 0.00 0.00 38.71 2.59
306 307 0.396417 ATACTGCCTCTGCTCCGTCT 60.396 55.000 0.00 0.00 38.71 4.18
307 308 0.461961 AATACTGCCTCTGCTCCGTC 59.538 55.000 0.00 0.00 38.71 4.79
308 309 0.461961 GAATACTGCCTCTGCTCCGT 59.538 55.000 0.00 0.00 38.71 4.69
309 310 0.249657 GGAATACTGCCTCTGCTCCG 60.250 60.000 0.00 0.00 38.71 4.63
310 311 0.107643 GGGAATACTGCCTCTGCTCC 59.892 60.000 0.00 0.00 38.71 4.70
311 312 0.107643 GGGGAATACTGCCTCTGCTC 59.892 60.000 0.00 0.00 38.71 4.26
312 313 0.327000 AGGGGAATACTGCCTCTGCT 60.327 55.000 0.00 0.00 34.11 4.24
313 314 0.548510 AAGGGGAATACTGCCTCTGC 59.451 55.000 0.00 0.00 36.05 4.26
314 315 1.141858 GGAAGGGGAATACTGCCTCTG 59.858 57.143 0.00 0.00 36.05 3.35
315 316 1.512735 GGAAGGGGAATACTGCCTCT 58.487 55.000 0.00 0.00 38.04 3.69
316 317 0.474614 GGGAAGGGGAATACTGCCTC 59.525 60.000 0.00 0.00 33.82 4.70
317 318 0.253630 TGGGAAGGGGAATACTGCCT 60.254 55.000 0.00 0.00 33.82 4.75
318 319 0.106669 GTGGGAAGGGGAATACTGCC 60.107 60.000 0.00 0.00 32.41 4.85
319 320 0.106669 GGTGGGAAGGGGAATACTGC 60.107 60.000 0.00 0.00 0.00 4.40
320 321 1.064685 GTGGTGGGAAGGGGAATACTG 60.065 57.143 0.00 0.00 0.00 2.74
321 322 1.203570 AGTGGTGGGAAGGGGAATACT 60.204 52.381 0.00 0.00 0.00 2.12
322 323 1.296002 AGTGGTGGGAAGGGGAATAC 58.704 55.000 0.00 0.00 0.00 1.89
323 324 2.974285 TAGTGGTGGGAAGGGGAATA 57.026 50.000 0.00 0.00 0.00 1.75
324 325 2.068831 TTAGTGGTGGGAAGGGGAAT 57.931 50.000 0.00 0.00 0.00 3.01
325 326 2.042433 CAATTAGTGGTGGGAAGGGGAA 59.958 50.000 0.00 0.00 0.00 3.97
326 327 1.638589 CAATTAGTGGTGGGAAGGGGA 59.361 52.381 0.00 0.00 0.00 4.81
327 328 1.959989 GCAATTAGTGGTGGGAAGGGG 60.960 57.143 0.00 0.00 0.00 4.79
328 329 1.474330 GCAATTAGTGGTGGGAAGGG 58.526 55.000 0.00 0.00 0.00 3.95
329 330 1.474330 GGCAATTAGTGGTGGGAAGG 58.526 55.000 0.00 0.00 0.00 3.46
330 331 1.094785 CGGCAATTAGTGGTGGGAAG 58.905 55.000 0.00 0.00 0.00 3.46
331 332 0.322997 CCGGCAATTAGTGGTGGGAA 60.323 55.000 0.00 0.00 0.00 3.97
332 333 1.202099 TCCGGCAATTAGTGGTGGGA 61.202 55.000 0.00 0.00 0.00 4.37
333 334 0.748005 CTCCGGCAATTAGTGGTGGG 60.748 60.000 0.00 0.00 0.00 4.61
334 335 1.376609 GCTCCGGCAATTAGTGGTGG 61.377 60.000 0.00 0.00 38.54 4.61
335 336 1.705337 CGCTCCGGCAATTAGTGGTG 61.705 60.000 0.00 0.00 38.60 4.17
336 337 1.449601 CGCTCCGGCAATTAGTGGT 60.450 57.895 0.00 0.00 38.60 4.16
337 338 2.180204 CCGCTCCGGCAATTAGTGG 61.180 63.158 5.39 5.39 41.17 4.00
338 339 3.409856 CCGCTCCGGCAATTAGTG 58.590 61.111 0.00 0.00 41.17 2.74
348 349 2.507992 CTTCTGTCTGCCGCTCCG 60.508 66.667 0.00 0.00 0.00 4.63
349 350 2.125350 CCTTCTGTCTGCCGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
350 351 0.320771 TTTCCTTCTGTCTGCCGCTC 60.321 55.000 0.00 0.00 0.00 5.03
351 352 0.321122 CTTTCCTTCTGTCTGCCGCT 60.321 55.000 0.00 0.00 0.00 5.52
352 353 0.603975 ACTTTCCTTCTGTCTGCCGC 60.604 55.000 0.00 0.00 0.00 6.53
353 354 1.151668 CACTTTCCTTCTGTCTGCCG 58.848 55.000 0.00 0.00 0.00 5.69
354 355 2.550830 TCACTTTCCTTCTGTCTGCC 57.449 50.000 0.00 0.00 0.00 4.85
355 356 3.438434 GGATTCACTTTCCTTCTGTCTGC 59.562 47.826 0.00 0.00 0.00 4.26
356 357 4.645535 TGGATTCACTTTCCTTCTGTCTG 58.354 43.478 0.00 0.00 34.17 3.51
357 358 4.594920 TCTGGATTCACTTTCCTTCTGTCT 59.405 41.667 0.00 0.00 34.17 3.41
358 359 4.899502 TCTGGATTCACTTTCCTTCTGTC 58.100 43.478 0.00 0.00 34.17 3.51
359 360 4.982241 TCTGGATTCACTTTCCTTCTGT 57.018 40.909 0.00 0.00 34.17 3.41
360 361 6.830873 AATTCTGGATTCACTTTCCTTCTG 57.169 37.500 0.00 0.00 34.17 3.02
361 362 6.150140 CGAAATTCTGGATTCACTTTCCTTCT 59.850 38.462 0.00 0.00 34.17 2.85
362 363 6.317857 CGAAATTCTGGATTCACTTTCCTTC 58.682 40.000 0.00 0.00 34.17 3.46
363 364 5.335976 GCGAAATTCTGGATTCACTTTCCTT 60.336 40.000 0.00 0.00 34.17 3.36
364 365 4.156739 GCGAAATTCTGGATTCACTTTCCT 59.843 41.667 0.00 0.00 34.17 3.36
365 366 4.415735 GCGAAATTCTGGATTCACTTTCC 58.584 43.478 0.00 0.00 0.00 3.13
366 367 4.156739 AGGCGAAATTCTGGATTCACTTTC 59.843 41.667 0.00 0.00 0.00 2.62
367 368 4.082125 AGGCGAAATTCTGGATTCACTTT 58.918 39.130 0.00 0.00 0.00 2.66
368 369 3.441572 CAGGCGAAATTCTGGATTCACTT 59.558 43.478 0.00 0.00 0.00 3.16
369 370 3.012518 CAGGCGAAATTCTGGATTCACT 58.987 45.455 0.00 0.00 0.00 3.41
370 371 3.009723 TCAGGCGAAATTCTGGATTCAC 58.990 45.455 0.00 0.00 0.00 3.18
371 372 3.273434 CTCAGGCGAAATTCTGGATTCA 58.727 45.455 0.00 0.00 0.00 2.57
372 373 2.615912 CCTCAGGCGAAATTCTGGATTC 59.384 50.000 0.00 0.00 0.00 2.52
373 374 2.239654 TCCTCAGGCGAAATTCTGGATT 59.760 45.455 0.00 0.00 0.00 3.01
374 375 1.839994 TCCTCAGGCGAAATTCTGGAT 59.160 47.619 0.00 0.00 0.00 3.41
375 376 1.208052 CTCCTCAGGCGAAATTCTGGA 59.792 52.381 0.00 0.00 0.00 3.86
376 377 1.208052 TCTCCTCAGGCGAAATTCTGG 59.792 52.381 0.00 0.00 0.00 3.86
377 378 2.680312 TCTCCTCAGGCGAAATTCTG 57.320 50.000 0.00 0.00 0.00 3.02
378 379 2.223923 CGATCTCCTCAGGCGAAATTCT 60.224 50.000 0.00 0.00 0.00 2.40
379 380 2.131183 CGATCTCCTCAGGCGAAATTC 58.869 52.381 0.00 0.00 0.00 2.17
380 381 1.757118 TCGATCTCCTCAGGCGAAATT 59.243 47.619 0.00 0.00 0.00 1.82
381 382 1.339610 CTCGATCTCCTCAGGCGAAAT 59.660 52.381 0.00 0.00 0.00 2.17
382 383 0.741326 CTCGATCTCCTCAGGCGAAA 59.259 55.000 0.00 0.00 0.00 3.46
383 384 0.394488 ACTCGATCTCCTCAGGCGAA 60.394 55.000 0.00 0.00 0.00 4.70
384 385 1.098129 CACTCGATCTCCTCAGGCGA 61.098 60.000 0.00 0.00 0.00 5.54
385 386 1.358402 CACTCGATCTCCTCAGGCG 59.642 63.158 0.00 0.00 0.00 5.52
386 387 0.753479 TCCACTCGATCTCCTCAGGC 60.753 60.000 0.00 0.00 0.00 4.85
387 388 1.317613 CTCCACTCGATCTCCTCAGG 58.682 60.000 0.00 0.00 0.00 3.86
388 389 1.133945 TCCTCCACTCGATCTCCTCAG 60.134 57.143 0.00 0.00 0.00 3.35
389 390 0.919710 TCCTCCACTCGATCTCCTCA 59.080 55.000 0.00 0.00 0.00 3.86
390 391 2.060050 TTCCTCCACTCGATCTCCTC 57.940 55.000 0.00 0.00 0.00 3.71
391 392 2.383855 CTTTCCTCCACTCGATCTCCT 58.616 52.381 0.00 0.00 0.00 3.69
392 393 1.202475 GCTTTCCTCCACTCGATCTCC 60.202 57.143 0.00 0.00 0.00 3.71
393 394 1.754226 AGCTTTCCTCCACTCGATCTC 59.246 52.381 0.00 0.00 0.00 2.75
394 395 1.859302 AGCTTTCCTCCACTCGATCT 58.141 50.000 0.00 0.00 0.00 2.75
395 396 2.675348 CAAAGCTTTCCTCCACTCGATC 59.325 50.000 9.23 0.00 0.00 3.69
396 397 2.704572 CAAAGCTTTCCTCCACTCGAT 58.295 47.619 9.23 0.00 0.00 3.59
397 398 1.878102 GCAAAGCTTTCCTCCACTCGA 60.878 52.381 9.23 0.00 0.00 4.04
398 399 0.519077 GCAAAGCTTTCCTCCACTCG 59.481 55.000 9.23 0.00 0.00 4.18
399 400 0.884514 GGCAAAGCTTTCCTCCACTC 59.115 55.000 9.23 0.00 0.00 3.51
400 401 0.185901 TGGCAAAGCTTTCCTCCACT 59.814 50.000 20.96 0.00 0.00 4.00
401 402 1.260544 ATGGCAAAGCTTTCCTCCAC 58.739 50.000 20.36 5.73 0.00 4.02
402 403 2.825532 GTTATGGCAAAGCTTTCCTCCA 59.174 45.455 20.27 20.27 0.00 3.86
403 404 3.092301 AGTTATGGCAAAGCTTTCCTCC 58.908 45.455 20.96 16.96 0.00 4.30
404 405 4.096532 GGTAGTTATGGCAAAGCTTTCCTC 59.903 45.833 20.96 10.87 0.00 3.71
405 406 4.017126 GGTAGTTATGGCAAAGCTTTCCT 58.983 43.478 20.96 12.92 0.00 3.36
406 407 4.017126 AGGTAGTTATGGCAAAGCTTTCC 58.983 43.478 9.23 13.81 0.00 3.13
407 408 5.402398 CAAGGTAGTTATGGCAAAGCTTTC 58.598 41.667 9.23 4.47 0.00 2.62
408 409 4.321974 GCAAGGTAGTTATGGCAAAGCTTT 60.322 41.667 5.69 5.69 0.00 3.51
409 410 3.193479 GCAAGGTAGTTATGGCAAAGCTT 59.807 43.478 0.00 0.00 0.00 3.74
410 411 2.755103 GCAAGGTAGTTATGGCAAAGCT 59.245 45.455 0.00 0.00 0.00 3.74
411 412 2.491693 TGCAAGGTAGTTATGGCAAAGC 59.508 45.455 0.00 0.00 0.00 3.51
412 413 4.458989 TCTTGCAAGGTAGTTATGGCAAAG 59.541 41.667 25.73 0.00 40.29 2.77
413 414 4.217550 GTCTTGCAAGGTAGTTATGGCAAA 59.782 41.667 25.73 0.00 40.29 3.68
414 415 3.756434 GTCTTGCAAGGTAGTTATGGCAA 59.244 43.478 25.73 0.00 38.75 4.52
415 416 3.244735 TGTCTTGCAAGGTAGTTATGGCA 60.245 43.478 25.73 3.07 0.00 4.92
416 417 3.343617 TGTCTTGCAAGGTAGTTATGGC 58.656 45.455 25.73 0.14 0.00 4.40
428 429 6.099341 GGTCTTTTTCTTTCTTGTCTTGCAA 58.901 36.000 0.00 0.00 35.50 4.08
429 430 5.650543 GGTCTTTTTCTTTCTTGTCTTGCA 58.349 37.500 0.00 0.00 0.00 4.08
430 431 4.735338 CGGTCTTTTTCTTTCTTGTCTTGC 59.265 41.667 0.00 0.00 0.00 4.01
431 432 5.163652 ACCGGTCTTTTTCTTTCTTGTCTTG 60.164 40.000 0.00 0.00 0.00 3.02
432 433 4.948004 ACCGGTCTTTTTCTTTCTTGTCTT 59.052 37.500 0.00 0.00 0.00 3.01
433 434 4.524053 ACCGGTCTTTTTCTTTCTTGTCT 58.476 39.130 0.00 0.00 0.00 3.41
434 435 4.575236 AGACCGGTCTTTTTCTTTCTTGTC 59.425 41.667 31.69 0.00 36.31 3.18
435 436 4.335594 CAGACCGGTCTTTTTCTTTCTTGT 59.664 41.667 34.54 5.83 37.98 3.16
436 437 4.574828 TCAGACCGGTCTTTTTCTTTCTTG 59.425 41.667 34.54 18.76 37.98 3.02
437 438 4.575236 GTCAGACCGGTCTTTTTCTTTCTT 59.425 41.667 34.54 6.56 37.98 2.52
438 439 4.127907 GTCAGACCGGTCTTTTTCTTTCT 58.872 43.478 34.54 7.14 37.98 2.52
439 440 4.127907 AGTCAGACCGGTCTTTTTCTTTC 58.872 43.478 34.54 16.67 37.98 2.62
440 441 4.127907 GAGTCAGACCGGTCTTTTTCTTT 58.872 43.478 34.54 15.23 37.98 2.52
441 442 3.494573 GGAGTCAGACCGGTCTTTTTCTT 60.495 47.826 34.54 16.28 37.98 2.52
442 443 2.037381 GGAGTCAGACCGGTCTTTTTCT 59.963 50.000 34.54 25.94 37.98 2.52
443 444 2.037381 AGGAGTCAGACCGGTCTTTTTC 59.963 50.000 34.54 26.99 37.98 2.29
444 445 2.047830 AGGAGTCAGACCGGTCTTTTT 58.952 47.619 34.54 21.31 37.98 1.94
445 446 1.718280 AGGAGTCAGACCGGTCTTTT 58.282 50.000 34.54 21.67 37.98 2.27
446 447 1.619332 GAAGGAGTCAGACCGGTCTTT 59.381 52.381 34.54 24.04 37.98 2.52
447 448 1.203075 AGAAGGAGTCAGACCGGTCTT 60.203 52.381 34.54 20.93 37.98 3.01
448 449 0.406361 AGAAGGAGTCAGACCGGTCT 59.594 55.000 31.69 31.69 41.37 3.85
449 450 0.528470 CAGAAGGAGTCAGACCGGTC 59.472 60.000 27.67 27.67 0.00 4.79
450 451 0.112606 TCAGAAGGAGTCAGACCGGT 59.887 55.000 6.92 6.92 0.00 5.28
451 452 0.814457 CTCAGAAGGAGTCAGACCGG 59.186 60.000 0.00 0.00 38.90 5.28
452 453 0.172352 GCTCAGAAGGAGTCAGACCG 59.828 60.000 0.00 0.00 45.88 4.79
453 454 0.172352 CGCTCAGAAGGAGTCAGACC 59.828 60.000 0.00 0.00 45.88 3.85
454 455 0.885196 ACGCTCAGAAGGAGTCAGAC 59.115 55.000 0.00 0.00 45.88 3.51
455 456 0.884514 CACGCTCAGAAGGAGTCAGA 59.115 55.000 0.00 0.00 45.88 3.27
456 457 0.108898 CCACGCTCAGAAGGAGTCAG 60.109 60.000 0.00 0.00 45.88 3.51
457 458 0.539669 TCCACGCTCAGAAGGAGTCA 60.540 55.000 0.00 0.00 45.88 3.41
458 459 0.172352 CTCCACGCTCAGAAGGAGTC 59.828 60.000 0.00 0.00 45.88 3.36
459 460 1.882989 GCTCCACGCTCAGAAGGAGT 61.883 60.000 8.89 0.00 45.88 3.85
460 461 1.153667 GCTCCACGCTCAGAAGGAG 60.154 63.158 0.00 0.00 46.93 3.69
461 462 1.471829 TTGCTCCACGCTCAGAAGGA 61.472 55.000 0.00 0.00 40.11 3.36
462 463 0.603707 TTTGCTCCACGCTCAGAAGG 60.604 55.000 0.00 0.00 40.11 3.46
463 464 1.446907 ATTTGCTCCACGCTCAGAAG 58.553 50.000 0.00 0.00 40.11 2.85
464 465 2.760634 TATTTGCTCCACGCTCAGAA 57.239 45.000 0.00 0.00 40.11 3.02
465 466 2.760634 TTATTTGCTCCACGCTCAGA 57.239 45.000 0.00 0.00 40.11 3.27
466 467 3.829886 TTTTATTTGCTCCACGCTCAG 57.170 42.857 0.00 0.00 40.11 3.35
484 485 9.744468 ATTTGTGTTAAGTAAGCGAAGATTTTT 57.256 25.926 0.00 0.00 37.33 1.94
485 486 9.744468 AATTTGTGTTAAGTAAGCGAAGATTTT 57.256 25.926 0.00 0.00 37.33 1.82
488 489 9.821662 GTTAATTTGTGTTAAGTAAGCGAAGAT 57.178 29.630 0.00 0.00 0.00 2.40
489 490 9.048446 AGTTAATTTGTGTTAAGTAAGCGAAGA 57.952 29.630 0.00 0.00 0.00 2.87
492 493 9.480053 AGTAGTTAATTTGTGTTAAGTAAGCGA 57.520 29.630 0.00 0.00 33.55 4.93
501 502 8.842280 CCACCTCAAAGTAGTTAATTTGTGTTA 58.158 33.333 10.66 0.00 40.79 2.41
502 503 7.340999 ACCACCTCAAAGTAGTTAATTTGTGTT 59.659 33.333 10.66 0.00 40.79 3.32
503 504 6.831868 ACCACCTCAAAGTAGTTAATTTGTGT 59.168 34.615 10.66 7.61 40.79 3.72
504 505 7.228706 AGACCACCTCAAAGTAGTTAATTTGTG 59.771 37.037 10.66 8.75 40.79 3.33
505 506 7.228706 CAGACCACCTCAAAGTAGTTAATTTGT 59.771 37.037 10.66 0.00 40.79 2.83
506 507 7.228706 ACAGACCACCTCAAAGTAGTTAATTTG 59.771 37.037 5.89 5.89 41.18 2.32
507 508 7.287810 ACAGACCACCTCAAAGTAGTTAATTT 58.712 34.615 0.00 0.00 0.00 1.82
508 509 6.838382 ACAGACCACCTCAAAGTAGTTAATT 58.162 36.000 0.00 0.00 0.00 1.40
509 510 6.042781 TGACAGACCACCTCAAAGTAGTTAAT 59.957 38.462 0.00 0.00 0.00 1.40
510 511 5.364446 TGACAGACCACCTCAAAGTAGTTAA 59.636 40.000 0.00 0.00 0.00 2.01
511 512 4.897076 TGACAGACCACCTCAAAGTAGTTA 59.103 41.667 0.00 0.00 0.00 2.24
512 513 3.709653 TGACAGACCACCTCAAAGTAGTT 59.290 43.478 0.00 0.00 0.00 2.24
513 514 3.305720 TGACAGACCACCTCAAAGTAGT 58.694 45.455 0.00 0.00 0.00 2.73
514 515 4.336889 TTGACAGACCACCTCAAAGTAG 57.663 45.455 0.00 0.00 0.00 2.57
515 516 4.764050 TTTGACAGACCACCTCAAAGTA 57.236 40.909 0.00 0.00 31.72 2.24
516 517 3.644966 TTTGACAGACCACCTCAAAGT 57.355 42.857 0.00 0.00 31.72 2.66
517 518 4.981806 TTTTTGACAGACCACCTCAAAG 57.018 40.909 0.00 0.00 35.78 2.77
538 539 3.564225 CGCTCCACCTCAAAGTAGTTTTT 59.436 43.478 0.00 0.00 0.00 1.94
539 540 3.139077 CGCTCCACCTCAAAGTAGTTTT 58.861 45.455 0.00 0.00 0.00 2.43
540 541 2.550208 CCGCTCCACCTCAAAGTAGTTT 60.550 50.000 0.00 0.00 0.00 2.66
541 542 1.002087 CCGCTCCACCTCAAAGTAGTT 59.998 52.381 0.00 0.00 0.00 2.24
542 543 0.608640 CCGCTCCACCTCAAAGTAGT 59.391 55.000 0.00 0.00 0.00 2.73
543 544 0.895530 TCCGCTCCACCTCAAAGTAG 59.104 55.000 0.00 0.00 0.00 2.57
544 545 1.568504 ATCCGCTCCACCTCAAAGTA 58.431 50.000 0.00 0.00 0.00 2.24
545 546 1.568504 TATCCGCTCCACCTCAAAGT 58.431 50.000 0.00 0.00 0.00 2.66
546 547 2.691409 TTATCCGCTCCACCTCAAAG 57.309 50.000 0.00 0.00 0.00 2.77
547 548 3.426787 TTTTATCCGCTCCACCTCAAA 57.573 42.857 0.00 0.00 0.00 2.69
548 549 3.426787 TTTTTATCCGCTCCACCTCAA 57.573 42.857 0.00 0.00 0.00 3.02
565 566 9.448438 GAGCAAAAGGATAATTAACCCATTTTT 57.552 29.630 8.09 6.34 0.00 1.94
566 567 8.046708 GGAGCAAAAGGATAATTAACCCATTTT 58.953 33.333 8.09 6.95 0.00 1.82
567 568 7.365563 GGGAGCAAAAGGATAATTAACCCATTT 60.366 37.037 8.09 7.52 33.48 2.32
568 569 6.099701 GGGAGCAAAAGGATAATTAACCCATT 59.900 38.462 8.09 2.04 33.48 3.16
590 591 1.760527 CACATGGACACCACTGGGA 59.239 57.895 0.00 0.00 35.80 4.37
592 593 0.957395 GAGCACATGGACACCACTGG 60.957 60.000 0.00 0.00 35.80 4.00
882 883 1.378646 TCTCTCTCGCCGTGGTCAT 60.379 57.895 0.00 0.00 0.00 3.06
966 971 4.467084 GGGATCTCAACGCCGCCA 62.467 66.667 0.00 0.00 0.00 5.69
1088 1094 3.781307 CCCTCCGATCAACGCCCA 61.781 66.667 0.00 0.00 41.07 5.36
1193 1199 2.358957 CATTGCTCAAAGATCCCGACA 58.641 47.619 0.00 0.00 0.00 4.35
1504 1511 7.094508 TCAACATTACAACCAATGCGATTAT 57.905 32.000 0.00 0.00 39.13 1.28
1513 1520 8.642432 TCCATACATTTTCAACATTACAACCAA 58.358 29.630 0.00 0.00 0.00 3.67
1703 1737 7.425224 TTGGACAAAAAGGGTTTCTGAATTA 57.575 32.000 0.00 0.00 0.00 1.40
1735 1802 1.259609 TGAATTTGGCCCAAGAGCAG 58.740 50.000 0.00 0.00 0.00 4.24
1755 1822 0.320771 CGGCACTTGGCTCTACACTT 60.321 55.000 0.90 0.00 44.01 3.16
1758 1825 2.662596 CCGGCACTTGGCTCTACA 59.337 61.111 0.90 0.00 44.01 2.74
1773 1840 0.468226 TTGGCCCATTAGTCTAGCCG 59.532 55.000 0.00 0.00 46.92 5.52
2006 2073 2.434428 CAGAGCTGAGGCACATTTTCT 58.566 47.619 0.00 0.00 41.70 2.52
2142 2211 0.324460 CCTAGGTTCGAGTCCCCAGT 60.324 60.000 0.00 0.00 0.00 4.00
2385 2459 3.084039 TGCCACTCTGACCAAAATCATC 58.916 45.455 0.00 0.00 0.00 2.92
2416 2490 1.958288 ACCAAGTGCCACTCTATCCT 58.042 50.000 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.