Multiple sequence alignment - TraesCS2A01G560700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G560700 chr2A 100.000 6139 0 0 1 6139 762769402 762775540 0.000000e+00 11337.0
1 TraesCS2A01G560700 chr2A 82.014 2413 363 40 1410 3805 762890963 762893321 0.000000e+00 1986.0
2 TraesCS2A01G560700 chr2A 83.687 2072 304 29 1409 3463 762883991 762886045 0.000000e+00 1923.0
3 TraesCS2A01G560700 chr2A 82.311 2233 351 27 1418 3621 762686025 762688242 0.000000e+00 1895.0
4 TraesCS2A01G560700 chr2A 79.710 2622 435 61 1245 3812 762801273 762803851 0.000000e+00 1805.0
5 TraesCS2A01G560700 chr2A 81.866 568 42 19 556 1086 762799589 762800132 7.360000e-114 422.0
6 TraesCS2A01G560700 chr2A 87.500 136 11 3 323 452 762798351 762798486 1.070000e-32 152.0
7 TraesCS2A01G560700 chr2A 87.313 134 12 3 323 452 762799525 762799657 1.380000e-31 148.0
8 TraesCS2A01G560700 chr2A 91.176 68 5 1 5359 5426 762762733 762762799 2.360000e-14 91.6
9 TraesCS2A01G560700 chr2A 100.000 29 0 0 466 494 762798350 762798378 3.000000e-03 54.7
10 TraesCS2A01G560700 chr2A 83.607 61 7 3 1008 1065 762890330 762890390 3.000000e-03 54.7
11 TraesCS2A01G560700 chr2D 95.171 5716 162 38 109 5740 636739487 636733802 0.000000e+00 8922.0
12 TraesCS2A01G560700 chr2D 81.863 2415 381 29 1418 3805 637381195 637378811 0.000000e+00 1980.0
13 TraesCS2A01G560700 chr2D 82.702 2243 304 42 1407 3601 637341345 637339139 0.000000e+00 1916.0
14 TraesCS2A01G560700 chr2D 82.329 2241 357 22 1408 3621 637021519 637019291 0.000000e+00 1908.0
15 TraesCS2A01G560700 chr2D 81.136 1760 280 33 1418 3157 636931363 636929636 0.000000e+00 1363.0
16 TraesCS2A01G560700 chr2D 81.742 838 85 26 113 909 636796977 636796167 6.710000e-179 638.0
17 TraesCS2A01G560700 chr2D 76.781 814 167 14 3956 4751 637338543 637337734 2.630000e-118 436.0
18 TraesCS2A01G560700 chr2D 82.378 471 71 7 4249 4709 636941827 636941359 3.450000e-107 399.0
19 TraesCS2A01G560700 chr2D 75.323 851 163 24 3928 4756 636928569 636927744 1.260000e-96 364.0
20 TraesCS2A01G560700 chr2D 94.301 193 6 4 5831 6023 636733818 636733631 2.160000e-74 291.0
21 TraesCS2A01G560700 chr2D 74.548 664 145 19 3972 4621 636793022 636792369 1.010000e-67 268.0
22 TraesCS2A01G560700 chr2D 91.139 158 11 3 5302 5459 636941276 636941122 1.730000e-50 211.0
23 TraesCS2A01G560700 chr2D 90.196 51 2 2 5080 5129 636790570 636790522 5.140000e-06 63.9
24 TraesCS2A01G560700 chr2B 85.137 2873 353 44 1408 4240 774708404 774705566 0.000000e+00 2872.0
25 TraesCS2A01G560700 chr2B 81.840 2043 327 31 1413 3427 794672235 794670209 0.000000e+00 1677.0
26 TraesCS2A01G560700 chr2B 86.506 704 47 20 556 1238 794698506 794697830 0.000000e+00 730.0
27 TraesCS2A01G560700 chr2B 81.366 703 105 13 4238 4915 774705532 774704831 3.230000e-152 549.0
28 TraesCS2A01G560700 chr2B 81.250 560 47 22 556 1089 794632461 794631934 3.450000e-107 399.0
29 TraesCS2A01G560700 chr2B 90.625 224 19 2 1240 1462 794697796 794697574 4.650000e-76 296.0
30 TraesCS2A01G560700 chr2B 88.559 236 13 6 4980 5205 774704822 774704591 2.180000e-69 274.0
31 TraesCS2A01G560700 chr2B 88.690 168 10 5 5570 5732 774704230 774704067 4.850000e-46 196.0
32 TraesCS2A01G560700 chr2B 79.692 325 25 19 5226 5539 774704523 774704229 4.850000e-46 196.0
33 TraesCS2A01G560700 chr2B 87.578 161 18 2 5729 5887 774704005 774703845 1.050000e-42 185.0
34 TraesCS2A01G560700 chr2B 88.667 150 10 4 349 497 774709611 774709468 6.320000e-40 176.0
35 TraesCS2A01G560700 chr2B 89.313 131 13 1 323 452 794673584 794673454 4.920000e-36 163.0
36 TraesCS2A01G560700 chr2B 95.604 91 4 0 1 91 731308809 731308899 4.960000e-31 147.0
37 TraesCS2A01G560700 chr2B 91.089 101 5 4 5360 5459 794560492 794560395 3.860000e-27 134.0
38 TraesCS2A01G560700 chr2B 100.000 33 0 0 462 494 794701281 794701249 1.850000e-05 62.1
39 TraesCS2A01G560700 chr2B 94.444 36 1 1 460 494 794673592 794673557 3.000000e-03 54.7
40 TraesCS2A01G560700 chr6B 84.764 2074 279 27 1407 3454 130301805 130303867 0.000000e+00 2045.0
41 TraesCS2A01G560700 chr6B 97.500 120 2 1 6021 6139 88886377 88886258 2.900000e-48 204.0
42 TraesCS2A01G560700 chr6D 84.634 2076 279 29 1407 3454 58043052 58045115 0.000000e+00 2030.0
43 TraesCS2A01G560700 chrUn 82.316 2228 347 25 1408 3601 234394570 234396784 0.000000e+00 1888.0
44 TraesCS2A01G560700 chrUn 82.316 2228 347 25 1408 3601 283150590 283152804 0.000000e+00 1888.0
45 TraesCS2A01G560700 chrUn 82.316 2228 347 25 1408 3601 312596877 312594663 0.000000e+00 1888.0
46 TraesCS2A01G560700 chrUn 92.216 835 33 10 4245 5056 359504880 359504055 0.000000e+00 1153.0
47 TraesCS2A01G560700 chrUn 91.976 835 35 10 4245 5056 359483890 359483065 0.000000e+00 1142.0
48 TraesCS2A01G560700 chrUn 85.630 849 104 6 3405 4238 359484778 359483933 0.000000e+00 876.0
49 TraesCS2A01G560700 chrUn 85.630 849 104 6 3405 4238 359505768 359504923 0.000000e+00 876.0
50 TraesCS2A01G560700 chrUn 100.000 389 0 0 4577 4965 480126019 480125631 0.000000e+00 719.0
51 TraesCS2A01G560700 chrUn 90.977 399 20 8 619 1015 332502832 332503216 1.960000e-144 523.0
52 TraesCS2A01G560700 chrUn 75.668 1122 213 32 3686 4756 234396851 234397963 7.100000e-139 505.0
53 TraesCS2A01G560700 chrUn 90.947 243 8 3 5059 5301 359483008 359482780 1.280000e-81 315.0
54 TraesCS2A01G560700 chrUn 90.947 243 8 3 5059 5301 359503998 359503770 1.280000e-81 315.0
55 TraesCS2A01G560700 chrUn 89.732 224 21 2 1237 1459 332503415 332503637 1.010000e-72 285.0
56 TraesCS2A01G560700 chrUn 89.080 174 13 4 1071 1238 332503211 332503384 1.730000e-50 211.0
57 TraesCS2A01G560700 chrUn 98.319 119 2 0 6021 6139 214936252 214936134 6.240000e-50 209.0
58 TraesCS2A01G560700 chrUn 98.319 119 2 0 6021 6139 331442501 331442383 6.240000e-50 209.0
59 TraesCS2A01G560700 chrUn 100.000 33 0 0 462 494 471292133 471292165 1.850000e-05 62.1
60 TraesCS2A01G560700 chr7B 87.097 1364 156 8 2891 4238 746114949 746113590 0.000000e+00 1526.0
61 TraesCS2A01G560700 chr7B 87.097 1364 156 8 2891 4238 746117875 746116516 0.000000e+00 1526.0
62 TraesCS2A01G560700 chr7B 86.850 1308 152 9 2947 4238 746120745 746119442 0.000000e+00 1445.0
63 TraesCS2A01G560700 chr7B 86.147 1321 97 33 109 1372 746124027 746122736 0.000000e+00 1347.0
64 TraesCS2A01G560700 chr7B 91.976 835 35 10 4245 5056 746113547 746112722 0.000000e+00 1142.0
65 TraesCS2A01G560700 chr7B 91.604 667 27 9 4410 5056 746142450 746141793 0.000000e+00 894.0
66 TraesCS2A01G560700 chr7B 85.488 758 92 6 3496 4238 746122659 746121905 0.000000e+00 774.0
67 TraesCS2A01G560700 chr7B 92.711 439 14 4 5059 5497 746141736 746141316 8.740000e-173 617.0
68 TraesCS2A01G560700 chr7B 92.357 314 10 3 5059 5372 746112665 746112366 9.450000e-118 435.0
69 TraesCS2A01G560700 chr7B 90.566 318 11 5 5710 6024 746141109 746140808 2.660000e-108 403.0
70 TraesCS2A01G560700 chr7B 81.959 388 32 17 714 1089 746160532 746160171 1.670000e-75 294.0
71 TraesCS2A01G560700 chr7B 98.291 117 2 0 6023 6139 84528646 84528530 8.070000e-49 206.0
72 TraesCS2A01G560700 chr7B 97.479 119 3 0 6021 6139 458347808 458347690 2.900000e-48 204.0
73 TraesCS2A01G560700 chr7B 95.161 124 6 0 4245 4368 746116473 746116350 4.850000e-46 196.0
74 TraesCS2A01G560700 chr7B 95.161 124 6 0 4245 4368 746119399 746119276 4.850000e-46 196.0
75 TraesCS2A01G560700 chr7B 94.355 124 7 0 4245 4368 746121862 746121739 2.260000e-44 191.0
76 TraesCS2A01G560700 chr7B 83.594 128 18 3 326 452 746124372 746124247 3.890000e-22 117.0
77 TraesCS2A01G560700 chr7B 100.000 29 0 0 466 494 746123599 746123571 3.000000e-03 54.7
78 TraesCS2A01G560700 chr4B 99.153 118 1 0 6022 6139 39285691 39285808 4.820000e-51 213.0
79 TraesCS2A01G560700 chr4B 96.703 91 3 0 1 91 636048682 636048772 1.070000e-32 152.0
80 TraesCS2A01G560700 chr5B 98.305 118 2 0 6022 6139 107739223 107739106 2.240000e-49 207.0
81 TraesCS2A01G560700 chr5B 97.500 120 2 1 6021 6139 633278311 633278192 2.900000e-48 204.0
82 TraesCS2A01G560700 chr5B 95.604 91 4 0 1 91 685697050 685697140 4.960000e-31 147.0
83 TraesCS2A01G560700 chr1A 98.291 117 2 0 6023 6139 276800705 276800821 8.070000e-49 206.0
84 TraesCS2A01G560700 chr7A 95.789 95 2 2 1 94 15526315 15526222 1.070000e-32 152.0
85 TraesCS2A01G560700 chr7D 95.604 91 4 0 1 91 23069903 23069993 4.960000e-31 147.0
86 TraesCS2A01G560700 chr7D 95.604 91 4 0 1 91 159524292 159524202 4.960000e-31 147.0
87 TraesCS2A01G560700 chr7D 94.681 94 4 1 1 94 592389879 592389787 1.780000e-30 145.0
88 TraesCS2A01G560700 chr5D 95.604 91 4 0 1 91 453129746 453129836 4.960000e-31 147.0
89 TraesCS2A01G560700 chr1D 93.617 94 6 0 1 94 2593988 2593895 2.310000e-29 141.0
90 TraesCS2A01G560700 chr1D 97.436 39 1 0 1134 1172 455752612 455752650 3.970000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G560700 chr2A 762769402 762775540 6138 False 11337.000000 11337 100.000000 1 6139 1 chr2A.!!$F3 6138
1 TraesCS2A01G560700 chr2A 762883991 762886045 2054 False 1923.000000 1923 83.687000 1409 3463 1 chr2A.!!$F4 2054
2 TraesCS2A01G560700 chr2A 762686025 762688242 2217 False 1895.000000 1895 82.311000 1418 3621 1 chr2A.!!$F1 2203
3 TraesCS2A01G560700 chr2A 762890330 762893321 2991 False 1020.350000 1986 82.810500 1008 3805 2 chr2A.!!$F6 2797
4 TraesCS2A01G560700 chr2A 762798350 762803851 5501 False 516.340000 1805 87.277800 323 3812 5 chr2A.!!$F5 3489
5 TraesCS2A01G560700 chr2D 636733631 636739487 5856 True 4606.500000 8922 94.736000 109 6023 2 chr2D.!!$R3 5914
6 TraesCS2A01G560700 chr2D 637378811 637381195 2384 True 1980.000000 1980 81.863000 1418 3805 1 chr2D.!!$R2 2387
7 TraesCS2A01G560700 chr2D 637019291 637021519 2228 True 1908.000000 1908 82.329000 1408 3621 1 chr2D.!!$R1 2213
8 TraesCS2A01G560700 chr2D 637337734 637341345 3611 True 1176.000000 1916 79.741500 1407 4751 2 chr2D.!!$R7 3344
9 TraesCS2A01G560700 chr2D 636927744 636931363 3619 True 863.500000 1363 78.229500 1418 4756 2 chr2D.!!$R5 3338
10 TraesCS2A01G560700 chr2D 636790522 636796977 6455 True 323.300000 638 82.162000 113 5129 3 chr2D.!!$R4 5016
11 TraesCS2A01G560700 chr2D 636941122 636941827 705 True 305.000000 399 86.758500 4249 5459 2 chr2D.!!$R6 1210
12 TraesCS2A01G560700 chr2B 774703845 774709611 5766 True 635.428571 2872 85.669857 349 5887 7 chr2B.!!$R3 5538
13 TraesCS2A01G560700 chr2B 794670209 794673592 3383 True 631.566667 1677 88.532333 323 3427 3 chr2B.!!$R4 3104
14 TraesCS2A01G560700 chr2B 794631934 794632461 527 True 399.000000 399 81.250000 556 1089 1 chr2B.!!$R2 533
15 TraesCS2A01G560700 chr2B 794697574 794701281 3707 True 362.700000 730 92.377000 462 1462 3 chr2B.!!$R5 1000
16 TraesCS2A01G560700 chr6B 130301805 130303867 2062 False 2045.000000 2045 84.764000 1407 3454 1 chr6B.!!$F1 2047
17 TraesCS2A01G560700 chr6D 58043052 58045115 2063 False 2030.000000 2030 84.634000 1407 3454 1 chr6D.!!$F1 2047
18 TraesCS2A01G560700 chrUn 283150590 283152804 2214 False 1888.000000 1888 82.316000 1408 3601 1 chrUn.!!$F1 2193
19 TraesCS2A01G560700 chrUn 312594663 312596877 2214 True 1888.000000 1888 82.316000 1408 3601 1 chrUn.!!$R2 2193
20 TraesCS2A01G560700 chrUn 234394570 234397963 3393 False 1196.500000 1888 78.992000 1408 4756 2 chrUn.!!$F3 3348
21 TraesCS2A01G560700 chrUn 359503770 359505768 1998 True 781.333333 1153 89.597667 3405 5301 3 chrUn.!!$R6 1896
22 TraesCS2A01G560700 chrUn 359482780 359484778 1998 True 777.666667 1142 89.517667 3405 5301 3 chrUn.!!$R5 1896
23 TraesCS2A01G560700 chrUn 332502832 332503637 805 False 339.666667 523 89.929667 619 1459 3 chrUn.!!$F4 840
24 TraesCS2A01G560700 chr7B 746112366 746124372 12006 True 745.808333 1526 90.440250 109 5372 12 chr7B.!!$R4 5263
25 TraesCS2A01G560700 chr7B 746140808 746142450 1642 True 638.000000 894 91.627000 4410 6024 3 chr7B.!!$R5 1614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 516 0.241481 CCGCTCGCCTAGTCTATTCC 59.759 60.000 0.0 0.0 0.00 3.01 F
723 5206 1.002033 CTGTGCTTTTGACAGTGAGCC 60.002 52.381 0.0 0.0 36.79 4.70 F
1693 9086 2.211250 AGGATGCAGTGTTTGATGCT 57.789 45.000 0.0 0.0 42.98 3.79 F
2893 15689 1.062488 AGCCTCAAGGTGGTGTTCCT 61.062 55.000 0.0 0.0 37.57 3.36 F
4039 17477 3.055675 TGTCCTTATTCCGTTGTCCGAAT 60.056 43.478 0.0 0.0 39.56 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1693 9086 5.721480 TCTGAACTCATCAATAAGGTCCTCA 59.279 40.000 0.00 0.0 37.67 3.86 R
2341 15136 2.173669 GGCATCATCCCACACGTCG 61.174 63.158 0.00 0.0 0.00 5.12 R
3200 16263 3.056107 CGGAGAAGTTTATCACACCAGGA 60.056 47.826 0.00 0.0 0.00 3.86 R
4052 17490 0.322546 AGGGACTGCGAAACCAATCC 60.323 55.000 0.00 0.0 37.18 3.01 R
5870 20963 0.178891 AGGAGGCTCCTTGTCCAAGA 60.179 55.000 30.46 0.0 46.91 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 6.988522 TGTTGTCTAACAGAAGCATACTACA 58.011 36.000 0.00 0.00 41.66 2.74
76 77 7.438564 TGTTGTCTAACAGAAGCATACTACAA 58.561 34.615 0.00 0.00 41.66 2.41
77 78 7.384115 TGTTGTCTAACAGAAGCATACTACAAC 59.616 37.037 0.00 0.00 41.66 3.32
78 79 6.988522 TGTCTAACAGAAGCATACTACAACA 58.011 36.000 0.00 0.00 0.00 3.33
79 80 7.611770 TGTCTAACAGAAGCATACTACAACAT 58.388 34.615 0.00 0.00 0.00 2.71
80 81 7.545615 TGTCTAACAGAAGCATACTACAACATG 59.454 37.037 0.00 0.00 0.00 3.21
81 82 7.545965 GTCTAACAGAAGCATACTACAACATGT 59.454 37.037 0.00 0.00 0.00 3.21
82 83 8.094548 TCTAACAGAAGCATACTACAACATGTT 58.905 33.333 4.92 4.92 0.00 2.71
83 84 9.366216 CTAACAGAAGCATACTACAACATGTTA 57.634 33.333 11.53 0.00 0.00 2.41
84 85 8.615878 AACAGAAGCATACTACAACATGTTAA 57.384 30.769 11.53 1.59 0.00 2.01
110 111 9.973450 AAATCTAGAGTACATATGCAGTAACAG 57.027 33.333 1.58 0.00 0.00 3.16
111 112 6.971602 TCTAGAGTACATATGCAGTAACAGC 58.028 40.000 1.58 0.00 0.00 4.40
119 356 3.703001 ATGCAGTAACAGCTAACAGGT 57.297 42.857 0.00 0.00 0.00 4.00
147 384 9.781834 TCTCAATTTAAATTTGCCTGTATTACG 57.218 29.630 10.77 0.00 0.00 3.18
247 484 0.244994 ATAGGCGTCATCGAGGATGC 59.755 55.000 30.73 30.73 46.62 3.91
249 486 2.106938 GCGTCATCGAGGATGCCA 59.893 61.111 29.03 0.00 42.63 4.92
274 516 0.241481 CCGCTCGCCTAGTCTATTCC 59.759 60.000 0.00 0.00 0.00 3.01
307 549 7.554959 AGAGACACTTGGGAGAAAAGTATAA 57.445 36.000 0.00 0.00 35.70 0.98
459 701 5.921962 GGAAGCTTCCCAGAATTTTGTAT 57.078 39.130 31.91 0.00 41.62 2.29
502 744 3.192001 AGCATCATGAATTTTGTGAGCGT 59.808 39.130 0.00 0.00 0.00 5.07
504 746 4.731961 GCATCATGAATTTTGTGAGCGTAG 59.268 41.667 0.00 0.00 0.00 3.51
517 3411 4.566759 TGTGAGCGTAGTGAATTTAGCATC 59.433 41.667 0.00 0.00 0.00 3.91
530 3424 1.725641 TAGCATCACAACAAGGAGCG 58.274 50.000 0.00 0.00 0.00 5.03
554 3477 6.348786 CGGGTAGCATCATGAATTTTCTATGG 60.349 42.308 0.00 0.00 0.00 2.74
605 5054 2.431454 CCTCTTGCTTCTTCCTGGAAC 58.569 52.381 4.68 0.00 0.00 3.62
647 5097 4.262506 GGTTGACTCCTGTAGCTTGTTAGT 60.263 45.833 0.00 0.00 0.00 2.24
694 5150 5.869579 AGGTTGTTAGCTTCATTTCTCTCA 58.130 37.500 0.00 0.00 0.00 3.27
699 5155 6.111382 TGTTAGCTTCATTTCTCTCATCCTG 58.889 40.000 0.00 0.00 0.00 3.86
723 5206 1.002033 CTGTGCTTTTGACAGTGAGCC 60.002 52.381 0.00 0.00 36.79 4.70
733 5216 2.282251 AGTGAGCCCTCGTCGACA 60.282 61.111 17.16 1.87 0.00 4.35
735 5218 3.371063 TGAGCCCTCGTCGACACC 61.371 66.667 17.16 0.00 0.00 4.16
736 5219 3.371063 GAGCCCTCGTCGACACCA 61.371 66.667 17.16 0.00 0.00 4.17
737 5220 2.915659 AGCCCTCGTCGACACCAA 60.916 61.111 17.16 0.00 0.00 3.67
771 5281 4.106925 CCAGGTGAGCAGCCCTCC 62.107 72.222 0.00 0.00 39.98 4.30
809 5361 8.783833 TTTCTTCTACATCTTGATTTCTCCTG 57.216 34.615 0.00 0.00 0.00 3.86
880 5453 6.360370 AACTAGAATCCAGTGAGCTGTTTA 57.640 37.500 0.00 0.00 41.02 2.01
883 5456 5.234466 AGAATCCAGTGAGCTGTTTAAGT 57.766 39.130 0.00 0.00 41.02 2.24
1081 5678 6.084925 GCATCTCTTTCATGTTTCAACTCAG 58.915 40.000 0.00 0.00 0.00 3.35
1187 6560 6.043411 CAGTGTATAGGACTTCTAGCCAAAC 58.957 44.000 0.00 0.00 0.00 2.93
1238 6710 8.579682 AAAGACAAGTTTATTTCACTTCATGC 57.420 30.769 0.00 0.00 31.83 4.06
1283 7668 4.189231 GGTGGAAACGTATCTGCAGTAAT 58.811 43.478 14.67 3.11 0.00 1.89
1693 9086 2.211250 AGGATGCAGTGTTTGATGCT 57.789 45.000 0.00 0.00 42.98 3.79
2893 15689 1.062488 AGCCTCAAGGTGGTGTTCCT 61.062 55.000 0.00 0.00 37.57 3.36
2899 15695 4.003648 CTCAAGGTGGTGTTCCTATTCAC 58.996 47.826 0.00 0.00 34.56 3.18
3882 17305 3.089284 TCCTGTCTCTCGCAGATGTAAA 58.911 45.455 0.00 0.00 36.12 2.01
3924 17347 4.766404 TTTCAAGCCTCGAAGATTTTCC 57.234 40.909 0.00 0.00 33.89 3.13
3925 17348 3.703001 TCAAGCCTCGAAGATTTTCCT 57.297 42.857 0.00 0.00 33.89 3.36
4039 17477 3.055675 TGTCCTTATTCCGTTGTCCGAAT 60.056 43.478 0.00 0.00 39.56 3.34
4052 17490 2.135933 GTCCGAATATCCGCCTTCAAG 58.864 52.381 0.00 0.00 0.00 3.02
4115 17553 6.319658 GGATTCTGGTCTCTTTTGCAATATCA 59.680 38.462 0.00 0.00 0.00 2.15
4148 17586 5.188163 TCCCTCACCGAATTTAGTGTATCAA 59.812 40.000 8.21 0.00 35.45 2.57
4347 17859 2.560542 AGCATCTACCCGCTATTGAGAG 59.439 50.000 0.00 0.00 36.50 3.20
4477 18001 2.212812 TTGTGTTGCCATCATGCCTA 57.787 45.000 0.00 0.00 0.00 3.93
4575 18108 5.997746 TCGTCTCACTTGAAATTGAAGGATT 59.002 36.000 0.00 0.00 0.00 3.01
5079 20018 2.975489 TGCTTTATTTGGGGAGCCAAAA 59.025 40.909 0.00 0.00 41.96 2.44
5250 20237 6.479972 ACGGTTCTATTCCATCAATCTGTA 57.520 37.500 0.00 0.00 0.00 2.74
5251 20238 7.067496 ACGGTTCTATTCCATCAATCTGTAT 57.933 36.000 0.00 0.00 0.00 2.29
5252 20239 6.931281 ACGGTTCTATTCCATCAATCTGTATG 59.069 38.462 0.00 0.00 0.00 2.39
5253 20240 6.931281 CGGTTCTATTCCATCAATCTGTATGT 59.069 38.462 0.00 0.00 0.00 2.29
5434 20430 4.881850 CCCACCATATCCAAGTCTGTTTAC 59.118 45.833 0.00 0.00 0.00 2.01
5623 20640 6.852858 AGTTTTTGTTCTTAGCTCTGTCTC 57.147 37.500 0.00 0.00 0.00 3.36
5682 20700 3.386402 CCCTATCTCTCTGTTTCTCCCAC 59.614 52.174 0.00 0.00 0.00 4.61
5765 20856 1.289160 TGCAGGGCAGATTTCTAGGT 58.711 50.000 0.00 0.00 33.32 3.08
5781 20872 2.350863 AGGTCTCCTCTGATGGGTTT 57.649 50.000 0.00 0.00 0.00 3.27
5794 20885 5.939883 TCTGATGGGTTTGTATTTCAGAGTG 59.060 40.000 0.00 0.00 35.82 3.51
5795 20886 4.458989 TGATGGGTTTGTATTTCAGAGTGC 59.541 41.667 0.00 0.00 0.00 4.40
5796 20887 3.153919 TGGGTTTGTATTTCAGAGTGCC 58.846 45.455 0.00 0.00 0.00 5.01
5797 20888 3.153919 GGGTTTGTATTTCAGAGTGCCA 58.846 45.455 0.00 0.00 0.00 4.92
5798 20889 3.572255 GGGTTTGTATTTCAGAGTGCCAA 59.428 43.478 0.00 0.00 0.00 4.52
5807 20900 8.637986 TGTATTTCAGAGTGCCAAAAAGTAAAT 58.362 29.630 0.00 0.00 0.00 1.40
5809 20902 5.705609 TCAGAGTGCCAAAAAGTAAATCC 57.294 39.130 0.00 0.00 0.00 3.01
5843 20936 2.555199 CAGCACTTGTAGATGTAGGCC 58.445 52.381 0.00 0.00 0.00 5.19
6024 21117 6.986250 AGTACAGTAGTAGCCTAACGTTTTT 58.014 36.000 5.91 0.00 0.00 1.94
6087 21180 7.865706 AGTAGCATCATTTACAAGTAAAGGG 57.134 36.000 14.87 8.48 38.30 3.95
6088 21181 7.630082 AGTAGCATCATTTACAAGTAAAGGGA 58.370 34.615 14.87 12.46 38.30 4.20
6089 21182 8.275040 AGTAGCATCATTTACAAGTAAAGGGAT 58.725 33.333 14.87 13.76 38.30 3.85
6090 21183 9.555727 GTAGCATCATTTACAAGTAAAGGGATA 57.444 33.333 14.87 3.57 38.30 2.59
6092 21185 8.903820 AGCATCATTTACAAGTAAAGGGATAAC 58.096 33.333 14.87 12.21 38.30 1.89
6093 21186 8.135529 GCATCATTTACAAGTAAAGGGATAACC 58.864 37.037 14.87 7.58 38.30 2.85
6104 21197 0.402121 GGGATAACCTCATCAGGGGC 59.598 60.000 0.00 0.00 45.53 5.80
6105 21198 0.035458 GGATAACCTCATCAGGGGCG 59.965 60.000 0.00 0.00 45.53 6.13
6106 21199 0.759346 GATAACCTCATCAGGGGCGT 59.241 55.000 0.00 0.00 45.53 5.68
6107 21200 1.141053 GATAACCTCATCAGGGGCGTT 59.859 52.381 0.00 0.00 45.53 4.84
6108 21201 1.868713 TAACCTCATCAGGGGCGTTA 58.131 50.000 0.00 0.00 45.53 3.18
6109 21202 1.213296 AACCTCATCAGGGGCGTTAT 58.787 50.000 0.00 0.00 45.53 1.89
6110 21203 0.759346 ACCTCATCAGGGGCGTTATC 59.241 55.000 0.00 0.00 45.53 1.75
6111 21204 0.035458 CCTCATCAGGGGCGTTATCC 59.965 60.000 0.00 0.00 35.89 2.59
6112 21205 0.758734 CTCATCAGGGGCGTTATCCA 59.241 55.000 0.00 0.00 0.00 3.41
6113 21206 1.349026 CTCATCAGGGGCGTTATCCAT 59.651 52.381 0.00 0.00 0.00 3.41
6114 21207 1.347707 TCATCAGGGGCGTTATCCATC 59.652 52.381 0.00 0.00 0.00 3.51
6115 21208 0.693049 ATCAGGGGCGTTATCCATCC 59.307 55.000 0.00 0.00 0.00 3.51
6116 21209 0.692756 TCAGGGGCGTTATCCATCCA 60.693 55.000 0.00 0.00 0.00 3.41
6117 21210 0.182537 CAGGGGCGTTATCCATCCAA 59.817 55.000 0.00 0.00 0.00 3.53
6118 21211 0.923358 AGGGGCGTTATCCATCCAAA 59.077 50.000 0.00 0.00 0.00 3.28
6119 21212 1.029681 GGGGCGTTATCCATCCAAAC 58.970 55.000 0.00 0.00 0.00 2.93
6120 21213 1.029681 GGGCGTTATCCATCCAAACC 58.970 55.000 0.00 0.00 0.00 3.27
6121 21214 1.029681 GGCGTTATCCATCCAAACCC 58.970 55.000 0.00 0.00 0.00 4.11
6122 21215 1.409661 GGCGTTATCCATCCAAACCCT 60.410 52.381 0.00 0.00 0.00 4.34
6123 21216 1.947456 GCGTTATCCATCCAAACCCTC 59.053 52.381 0.00 0.00 0.00 4.30
6124 21217 2.210116 CGTTATCCATCCAAACCCTCG 58.790 52.381 0.00 0.00 0.00 4.63
6125 21218 2.572290 GTTATCCATCCAAACCCTCGG 58.428 52.381 0.00 0.00 0.00 4.63
6126 21219 2.171870 GTTATCCATCCAAACCCTCGGA 59.828 50.000 0.00 0.00 35.27 4.55
6127 21220 0.839946 ATCCATCCAAACCCTCGGAG 59.160 55.000 0.00 0.00 33.97 4.63
6128 21221 0.252513 TCCATCCAAACCCTCGGAGA 60.253 55.000 6.58 0.00 33.97 3.71
6129 21222 0.618458 CCATCCAAACCCTCGGAGAA 59.382 55.000 6.58 0.00 34.09 2.87
6130 21223 1.407437 CCATCCAAACCCTCGGAGAAG 60.407 57.143 6.58 0.00 34.09 2.85
6131 21224 1.555075 CATCCAAACCCTCGGAGAAGA 59.445 52.381 6.58 0.00 34.09 2.87
6132 21225 1.724545 TCCAAACCCTCGGAGAAGAA 58.275 50.000 6.58 0.00 34.09 2.52
6133 21226 2.051692 TCCAAACCCTCGGAGAAGAAA 58.948 47.619 6.58 0.00 34.09 2.52
6134 21227 2.440253 TCCAAACCCTCGGAGAAGAAAA 59.560 45.455 6.58 0.00 34.09 2.29
6135 21228 2.552743 CCAAACCCTCGGAGAAGAAAAC 59.447 50.000 6.58 0.00 34.09 2.43
6136 21229 2.552743 CAAACCCTCGGAGAAGAAAACC 59.447 50.000 6.58 0.00 34.09 3.27
6137 21230 1.730851 ACCCTCGGAGAAGAAAACCT 58.269 50.000 6.58 0.00 34.09 3.50
6138 21231 2.898662 ACCCTCGGAGAAGAAAACCTA 58.101 47.619 6.58 0.00 34.09 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.988522 TGTAGTATGCTTCTGTTAGACAACA 58.011 36.000 0.00 0.00 42.39 3.33
53 54 7.438564 TGTTGTAGTATGCTTCTGTTAGACAA 58.561 34.615 0.00 0.00 0.00 3.18
56 57 7.611770 ACATGTTGTAGTATGCTTCTGTTAGA 58.388 34.615 0.00 0.00 0.00 2.10
57 58 7.834068 ACATGTTGTAGTATGCTTCTGTTAG 57.166 36.000 0.00 0.00 0.00 2.34
58 59 9.713713 TTAACATGTTGTAGTATGCTTCTGTTA 57.286 29.630 21.42 0.00 0.00 2.41
59 60 8.615878 TTAACATGTTGTAGTATGCTTCTGTT 57.384 30.769 21.42 0.00 0.00 3.16
60 61 8.615878 TTTAACATGTTGTAGTATGCTTCTGT 57.384 30.769 21.42 0.00 0.00 3.41
84 85 9.973450 CTGTTACTGCATATGTACTCTAGATTT 57.027 33.333 4.29 0.00 0.00 2.17
87 88 6.773200 AGCTGTTACTGCATATGTACTCTAGA 59.227 38.462 16.07 0.00 0.00 2.43
89 90 6.961360 AGCTGTTACTGCATATGTACTCTA 57.039 37.500 16.07 0.00 0.00 2.43
90 91 5.860941 AGCTGTTACTGCATATGTACTCT 57.139 39.130 16.07 0.00 0.00 3.24
93 94 6.201044 CCTGTTAGCTGTTACTGCATATGTAC 59.799 42.308 16.07 5.55 0.00 2.90
94 95 6.127168 ACCTGTTAGCTGTTACTGCATATGTA 60.127 38.462 16.07 0.00 0.00 2.29
96 97 5.118990 ACCTGTTAGCTGTTACTGCATATG 58.881 41.667 16.07 0.00 0.00 1.78
97 98 5.359194 ACCTGTTAGCTGTTACTGCATAT 57.641 39.130 16.07 0.00 0.00 1.78
98 99 4.819105 ACCTGTTAGCTGTTACTGCATA 57.181 40.909 16.07 3.72 0.00 3.14
99 100 3.703001 ACCTGTTAGCTGTTACTGCAT 57.297 42.857 16.07 4.59 0.00 3.96
102 103 5.297547 TGAGAAACCTGTTAGCTGTTACTG 58.702 41.667 0.00 0.00 0.00 2.74
103 104 5.546621 TGAGAAACCTGTTAGCTGTTACT 57.453 39.130 0.00 0.00 0.00 2.24
104 105 6.803154 ATTGAGAAACCTGTTAGCTGTTAC 57.197 37.500 0.00 0.00 0.00 2.50
105 106 7.817418 AAATTGAGAAACCTGTTAGCTGTTA 57.183 32.000 0.00 0.00 0.00 2.41
106 107 6.715347 AAATTGAGAAACCTGTTAGCTGTT 57.285 33.333 0.00 0.00 0.00 3.16
107 108 7.817418 TTAAATTGAGAAACCTGTTAGCTGT 57.183 32.000 0.00 0.00 0.00 4.40
147 384 2.959465 ATTATCCCTGTAAGCCAGCC 57.041 50.000 0.00 0.00 40.06 4.85
231 468 2.663188 GGCATCCTCGATGACGCC 60.663 66.667 11.95 11.95 42.09 5.68
247 484 0.039074 CTAGGCGAGCGGAATACTGG 60.039 60.000 0.00 0.00 0.00 4.00
249 486 0.953003 GACTAGGCGAGCGGAATACT 59.047 55.000 0.00 0.00 0.00 2.12
274 516 5.127845 TCTCCCAAGTGTCTCTAGCATTAAG 59.872 44.000 0.00 0.00 0.00 1.85
307 549 5.129650 GCTCCTTGTTTCCTACCTTAGATCT 59.870 44.000 0.00 0.00 0.00 2.75
319 561 1.271379 TGCTACCTGCTCCTTGTTTCC 60.271 52.381 0.00 0.00 43.37 3.13
415 657 1.611673 CGAAGAAGCAACCATGGTCCT 60.612 52.381 20.07 14.84 35.91 3.85
450 692 7.093814 TGCTCCTTGTTGCATCTATACAAAATT 60.094 33.333 2.78 0.00 33.94 1.82
458 700 2.240667 ACCTGCTCCTTGTTGCATCTAT 59.759 45.455 0.00 0.00 38.59 1.98
459 701 1.630369 ACCTGCTCCTTGTTGCATCTA 59.370 47.619 0.00 0.00 38.59 1.98
460 702 0.403271 ACCTGCTCCTTGTTGCATCT 59.597 50.000 0.00 0.00 38.59 2.90
502 744 6.939730 TCCTTGTTGTGATGCTAAATTCACTA 59.060 34.615 4.86 0.00 42.17 2.74
504 746 6.012658 TCCTTGTTGTGATGCTAAATTCAC 57.987 37.500 0.00 0.00 42.05 3.18
517 3411 1.298859 GCTACCCGCTCCTTGTTGTG 61.299 60.000 0.00 0.00 35.14 3.33
530 3424 6.716628 TCCATAGAAAATTCATGATGCTACCC 59.283 38.462 0.00 0.00 0.00 3.69
549 3443 0.373716 GTTCGCTTGCCGTTCCATAG 59.626 55.000 0.00 0.00 38.35 2.23
554 3477 1.268778 GCTTTGTTCGCTTGCCGTTC 61.269 55.000 0.00 0.00 38.35 3.95
587 3510 2.057922 AGGTTCCAGGAAGAAGCAAGA 58.942 47.619 0.54 0.00 44.76 3.02
605 5054 0.035630 CCTCACAGCTTCTGGGAAGG 60.036 60.000 8.98 1.24 43.78 3.46
647 5097 2.637640 GGGAGTGAGGGAGGGGAGA 61.638 68.421 0.00 0.00 0.00 3.71
694 5150 1.074405 TCAAAAGCACAGGAGCAGGAT 59.926 47.619 0.00 0.00 36.85 3.24
699 5155 1.002033 CACTGTCAAAAGCACAGGAGC 60.002 52.381 6.15 0.00 44.86 4.70
723 5206 2.432628 GGCTTGGTGTCGACGAGG 60.433 66.667 11.62 0.00 0.00 4.63
733 5216 2.914097 GGTGCTGCTTGGCTTGGT 60.914 61.111 0.00 0.00 0.00 3.67
735 5218 0.389426 GATTGGTGCTGCTTGGCTTG 60.389 55.000 0.00 0.00 0.00 4.01
736 5219 1.538687 GGATTGGTGCTGCTTGGCTT 61.539 55.000 0.00 0.00 0.00 4.35
737 5220 1.980772 GGATTGGTGCTGCTTGGCT 60.981 57.895 0.00 0.00 0.00 4.75
771 5281 6.377327 TGTAGAAGAAAGCAAAAGGTTCAG 57.623 37.500 0.00 0.00 0.00 3.02
916 5502 1.163554 CTGTCTTCCTCAGCTTTGCC 58.836 55.000 0.00 0.00 0.00 4.52
1283 7668 7.788026 ACAAACCGACTATCATAGGTAATTGA 58.212 34.615 0.00 0.00 35.68 2.57
1693 9086 5.721480 TCTGAACTCATCAATAAGGTCCTCA 59.279 40.000 0.00 0.00 37.67 3.86
2341 15136 2.173669 GGCATCATCCCACACGTCG 61.174 63.158 0.00 0.00 0.00 5.12
2806 15602 6.435904 TGTCAAATTTGTAATCCTTGGGGTAG 59.564 38.462 17.47 0.00 0.00 3.18
2893 15689 3.261580 CTGACAGCCAACATCGTGAATA 58.738 45.455 0.00 0.00 0.00 1.75
2899 15695 4.154015 TCAAAATACTGACAGCCAACATCG 59.846 41.667 1.25 0.00 0.00 3.84
3200 16263 3.056107 CGGAGAAGTTTATCACACCAGGA 60.056 47.826 0.00 0.00 0.00 3.86
3882 17305 8.688747 TGAAATATTTTTGCACCCTTCAATTT 57.311 26.923 1.43 0.00 0.00 1.82
3904 17327 4.003648 GAGGAAAATCTTCGAGGCTTGAA 58.996 43.478 16.18 16.18 31.77 2.69
3924 17347 5.188434 TCACTATTTTCTTGATGCCTGGAG 58.812 41.667 0.00 0.00 0.00 3.86
3925 17348 5.178096 TCACTATTTTCTTGATGCCTGGA 57.822 39.130 0.00 0.00 0.00 3.86
3990 17428 5.245977 TCTTCAAGGAAATCAAAATCCCCAC 59.754 40.000 0.00 0.00 36.31 4.61
4039 17477 1.843851 ACCAATCCTTGAAGGCGGATA 59.156 47.619 17.49 0.00 39.05 2.59
4052 17490 0.322546 AGGGACTGCGAAACCAATCC 60.323 55.000 0.00 0.00 37.18 3.01
4083 17521 2.338809 AGAGACCAGAATCCCACACAA 58.661 47.619 0.00 0.00 0.00 3.33
4085 17523 3.425162 AAAGAGACCAGAATCCCACAC 57.575 47.619 0.00 0.00 0.00 3.82
4115 17553 2.753029 GGTGAGGGAGCAGCAGTT 59.247 61.111 0.00 0.00 36.35 3.16
4148 17586 3.713248 TGGATGGATGTGATAGACTTGCT 59.287 43.478 0.00 0.00 0.00 3.91
4347 17859 6.611381 TCCGAACAACATCTGATTTCAATTC 58.389 36.000 0.00 0.00 0.00 2.17
5079 20018 6.165700 AGAAAACATGGTCAGAAAAGCAAT 57.834 33.333 0.00 0.00 0.00 3.56
5250 20237 9.578576 AGTTATCAGCACAAATATGGATTACAT 57.421 29.630 0.00 0.00 43.68 2.29
5251 20238 8.978874 AGTTATCAGCACAAATATGGATTACA 57.021 30.769 0.00 0.00 0.00 2.41
5434 20430 0.466189 AGGTGCACAACTTGGGAGTG 60.466 55.000 20.43 0.00 35.91 3.51
5623 20640 1.534595 GAGAGCACAAGCAGAAACCAG 59.465 52.381 0.00 0.00 45.49 4.00
5682 20700 2.006888 CAGGTACACGCCATTTGGTAG 58.993 52.381 0.00 0.00 37.57 3.18
5765 20856 5.250543 TGAAATACAAACCCATCAGAGGAGA 59.749 40.000 0.00 0.00 0.00 3.71
5781 20872 7.575414 TTACTTTTTGGCACTCTGAAATACA 57.425 32.000 0.00 0.00 0.00 2.29
5794 20885 5.411361 GGGTCATTTGGATTTACTTTTTGGC 59.589 40.000 0.00 0.00 0.00 4.52
5795 20886 6.768483 AGGGTCATTTGGATTTACTTTTTGG 58.232 36.000 0.00 0.00 0.00 3.28
5796 20887 8.675705 AAAGGGTCATTTGGATTTACTTTTTG 57.324 30.769 0.00 0.00 0.00 2.44
5797 20888 7.936847 GGAAAGGGTCATTTGGATTTACTTTTT 59.063 33.333 0.00 0.00 0.00 1.94
5798 20889 7.071824 TGGAAAGGGTCATTTGGATTTACTTTT 59.928 33.333 0.00 0.00 0.00 2.27
5807 20900 1.146774 TGCTGGAAAGGGTCATTTGGA 59.853 47.619 0.00 0.00 0.00 3.53
5809 20902 2.242043 AGTGCTGGAAAGGGTCATTTG 58.758 47.619 0.00 0.00 0.00 2.32
5870 20963 0.178891 AGGAGGCTCCTTGTCCAAGA 60.179 55.000 30.46 0.00 46.91 3.02
6061 21154 8.739972 CCCTTTACTTGTAAATGATGCTACTTT 58.260 33.333 6.44 0.00 0.00 2.66
6062 21155 8.107095 TCCCTTTACTTGTAAATGATGCTACTT 58.893 33.333 6.44 0.00 0.00 2.24
6063 21156 7.630082 TCCCTTTACTTGTAAATGATGCTACT 58.370 34.615 6.44 0.00 0.00 2.57
6064 21157 7.859325 TCCCTTTACTTGTAAATGATGCTAC 57.141 36.000 6.44 0.00 0.00 3.58
6066 21159 8.903820 GTTATCCCTTTACTTGTAAATGATGCT 58.096 33.333 18.37 6.10 0.00 3.79
6067 21160 8.135529 GGTTATCCCTTTACTTGTAAATGATGC 58.864 37.037 18.37 13.86 0.00 3.91
6068 21161 9.408648 AGGTTATCCCTTTACTTGTAAATGATG 57.591 33.333 18.37 6.20 42.73 3.07
6069 21162 9.628500 GAGGTTATCCCTTTACTTGTAAATGAT 57.372 33.333 15.84 15.84 46.51 2.45
6070 21163 8.607713 TGAGGTTATCCCTTTACTTGTAAATGA 58.392 33.333 6.44 7.08 46.51 2.57
6071 21164 8.801882 TGAGGTTATCCCTTTACTTGTAAATG 57.198 34.615 6.44 4.50 46.51 2.32
6072 21165 9.628500 GATGAGGTTATCCCTTTACTTGTAAAT 57.372 33.333 6.44 0.00 46.51 1.40
6073 21166 8.607713 TGATGAGGTTATCCCTTTACTTGTAAA 58.392 33.333 5.92 5.92 46.51 2.01
6074 21167 8.153221 TGATGAGGTTATCCCTTTACTTGTAA 57.847 34.615 0.00 0.00 46.51 2.41
6075 21168 7.147549 CCTGATGAGGTTATCCCTTTACTTGTA 60.148 40.741 0.00 0.00 46.51 2.41
6076 21169 6.353082 CCTGATGAGGTTATCCCTTTACTTGT 60.353 42.308 0.00 0.00 46.51 3.16
6077 21170 6.058183 CCTGATGAGGTTATCCCTTTACTTG 58.942 44.000 0.00 0.00 46.51 3.16
6078 21171 5.132816 CCCTGATGAGGTTATCCCTTTACTT 59.867 44.000 0.00 0.00 46.51 2.24
6079 21172 4.660771 CCCTGATGAGGTTATCCCTTTACT 59.339 45.833 0.00 0.00 46.51 2.24
6080 21173 4.202472 CCCCTGATGAGGTTATCCCTTTAC 60.202 50.000 0.00 0.00 46.51 2.01
6081 21174 3.980698 CCCCTGATGAGGTTATCCCTTTA 59.019 47.826 0.00 0.00 46.51 1.85
6082 21175 2.785857 CCCCTGATGAGGTTATCCCTTT 59.214 50.000 0.00 0.00 46.51 3.11
6083 21176 2.422746 CCCCTGATGAGGTTATCCCTT 58.577 52.381 0.00 0.00 46.51 3.95
6085 21178 0.402121 GCCCCTGATGAGGTTATCCC 59.598 60.000 0.00 0.00 37.73 3.85
6086 21179 0.035458 CGCCCCTGATGAGGTTATCC 59.965 60.000 0.00 0.00 37.73 2.59
6087 21180 0.759346 ACGCCCCTGATGAGGTTATC 59.241 55.000 0.00 0.00 37.73 1.75
6088 21181 1.213296 AACGCCCCTGATGAGGTTAT 58.787 50.000 0.00 0.00 37.73 1.89
6089 21182 1.868713 TAACGCCCCTGATGAGGTTA 58.131 50.000 0.00 0.00 37.73 2.85
6090 21183 1.141053 GATAACGCCCCTGATGAGGTT 59.859 52.381 0.00 0.00 37.73 3.50
6091 21184 0.759346 GATAACGCCCCTGATGAGGT 59.241 55.000 0.00 0.00 37.73 3.85
6092 21185 0.035458 GGATAACGCCCCTGATGAGG 59.965 60.000 0.00 0.00 39.42 3.86
6093 21186 0.758734 TGGATAACGCCCCTGATGAG 59.241 55.000 0.00 0.00 0.00 2.90
6094 21187 1.347707 GATGGATAACGCCCCTGATGA 59.652 52.381 0.00 0.00 0.00 2.92
6095 21188 1.611673 GGATGGATAACGCCCCTGATG 60.612 57.143 0.00 0.00 0.00 3.07
6096 21189 0.693049 GGATGGATAACGCCCCTGAT 59.307 55.000 0.00 0.00 0.00 2.90
6097 21190 0.692756 TGGATGGATAACGCCCCTGA 60.693 55.000 0.00 0.00 0.00 3.86
6098 21191 0.182537 TTGGATGGATAACGCCCCTG 59.817 55.000 0.00 0.00 0.00 4.45
6099 21192 0.923358 TTTGGATGGATAACGCCCCT 59.077 50.000 0.00 0.00 0.00 4.79
6100 21193 1.029681 GTTTGGATGGATAACGCCCC 58.970 55.000 0.00 0.00 0.00 5.80
6101 21194 1.029681 GGTTTGGATGGATAACGCCC 58.970 55.000 0.00 0.00 0.00 6.13
6102 21195 1.029681 GGGTTTGGATGGATAACGCC 58.970 55.000 0.00 0.00 0.00 5.68
6103 21196 1.947456 GAGGGTTTGGATGGATAACGC 59.053 52.381 0.00 0.00 35.64 4.84
6104 21197 2.210116 CGAGGGTTTGGATGGATAACG 58.790 52.381 0.00 0.00 0.00 3.18
6105 21198 2.171870 TCCGAGGGTTTGGATGGATAAC 59.828 50.000 0.00 0.00 31.53 1.89
6106 21199 2.438021 CTCCGAGGGTTTGGATGGATAA 59.562 50.000 0.00 0.00 36.26 1.75
6107 21200 2.047061 CTCCGAGGGTTTGGATGGATA 58.953 52.381 0.00 0.00 36.26 2.59
6108 21201 0.839946 CTCCGAGGGTTTGGATGGAT 59.160 55.000 0.00 0.00 36.26 3.41
6109 21202 0.252513 TCTCCGAGGGTTTGGATGGA 60.253 55.000 0.00 0.00 36.26 3.41
6110 21203 0.618458 TTCTCCGAGGGTTTGGATGG 59.382 55.000 0.00 0.00 36.26 3.51
6111 21204 1.555075 TCTTCTCCGAGGGTTTGGATG 59.445 52.381 0.00 0.00 36.26 3.51
6112 21205 1.952621 TCTTCTCCGAGGGTTTGGAT 58.047 50.000 0.00 0.00 36.26 3.41
6113 21206 1.724545 TTCTTCTCCGAGGGTTTGGA 58.275 50.000 0.00 0.00 35.48 3.53
6114 21207 2.552743 GTTTTCTTCTCCGAGGGTTTGG 59.447 50.000 0.00 0.00 0.00 3.28
6115 21208 2.552743 GGTTTTCTTCTCCGAGGGTTTG 59.447 50.000 0.00 0.00 0.00 2.93
6116 21209 2.442126 AGGTTTTCTTCTCCGAGGGTTT 59.558 45.455 0.00 0.00 0.00 3.27
6117 21210 2.055579 AGGTTTTCTTCTCCGAGGGTT 58.944 47.619 0.00 0.00 0.00 4.11
6118 21211 1.730851 AGGTTTTCTTCTCCGAGGGT 58.269 50.000 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.