Multiple sequence alignment - TraesCS2A01G560500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G560500 chr2A 100.000 2949 0 0 1 2949 762644347 762647295 0.000000e+00 5446.0
1 TraesCS2A01G560500 chr2A 86.667 60 5 3 2033 2091 762722399 762722456 2.450000e-06 63.9
2 TraesCS2A01G560500 chrUn 87.363 1923 119 50 605 2465 234386383 234388243 0.000000e+00 2091.0
3 TraesCS2A01G560500 chrUn 87.812 361 28 11 1 352 234385407 234385760 2.740000e-110 409.0
4 TraesCS2A01G560500 chrUn 89.899 198 10 4 400 597 234385854 234386041 2.270000e-61 246.0
5 TraesCS2A01G560500 chrUn 87.940 199 24 0 10 208 234385314 234385512 4.910000e-58 235.0
6 TraesCS2A01G560500 chr2D 85.683 1837 123 61 605 2384 637423304 637421551 0.000000e+00 1807.0
7 TraesCS2A01G560500 chr2D 86.383 470 39 6 2492 2946 637390733 637390274 9.500000e-135 490.0
8 TraesCS2A01G560500 chr2D 88.102 353 37 4 1 352 637424008 637423660 5.880000e-112 414.0
9 TraesCS2A01G560500 chr2D 89.412 170 16 2 9 177 637424637 637424469 2.300000e-51 213.0
10 TraesCS2A01G560500 chr2D 88.095 168 20 0 40 207 637424071 637423904 1.790000e-47 200.0
11 TraesCS2A01G560500 chr2D 83.945 218 22 7 387 601 131967026 131966819 2.320000e-46 196.0
12 TraesCS2A01G560500 chr2D 87.421 159 18 2 2707 2863 593512500 593512658 6.490000e-42 182.0
13 TraesCS2A01G560500 chr2D 88.732 142 13 3 1 141 637424594 637424455 1.410000e-38 171.0
14 TraesCS2A01G560500 chr2D 87.288 118 15 0 91 208 637424071 637423954 5.130000e-28 135.0
15 TraesCS2A01G560500 chr2D 94.444 54 2 1 299 352 131967173 131967121 6.770000e-12 82.4
16 TraesCS2A01G560500 chr2D 92.593 54 3 1 299 352 577522453 577522505 3.150000e-10 76.8
17 TraesCS2A01G560500 chr1D 86.697 218 17 7 387 601 5743833 5743625 6.360000e-57 231.0
18 TraesCS2A01G560500 chr1D 85.780 218 18 7 387 601 120851612 120851405 4.950000e-53 219.0
19 TraesCS2A01G560500 chr7A 85.780 218 17 9 387 601 178997024 178996818 4.950000e-53 219.0
20 TraesCS2A01G560500 chr5D 85.780 218 18 7 387 601 444010881 444010674 4.950000e-53 219.0
21 TraesCS2A01G560500 chr5D 81.295 278 29 16 387 648 507902483 507902213 1.390000e-48 204.0
22 TraesCS2A01G560500 chr5D 89.474 152 16 0 2707 2858 461072751 461072600 3.000000e-45 193.0
23 TraesCS2A01G560500 chr3A 82.014 278 23 10 387 648 731329658 731329392 8.280000e-51 211.0
24 TraesCS2A01G560500 chr4A 84.862 218 20 7 387 601 201030469 201030262 1.070000e-49 207.0
25 TraesCS2A01G560500 chr4A 89.474 152 16 0 2707 2858 150653462 150653311 3.000000e-45 193.0
26 TraesCS2A01G560500 chr4D 90.000 150 15 0 2707 2856 21147744 21147893 8.340000e-46 195.0
27 TraesCS2A01G560500 chr6B 89.333 150 16 0 2707 2856 232734968 232734819 3.880000e-44 189.0
28 TraesCS2A01G560500 chr4B 88.816 152 17 0 2707 2858 28724292 28724141 1.400000e-43 187.0
29 TraesCS2A01G560500 chr3B 89.333 150 15 1 2707 2856 68913626 68913478 1.400000e-43 187.0
30 TraesCS2A01G560500 chr2B 88.816 152 17 0 2707 2858 585712506 585712657 1.400000e-43 187.0
31 TraesCS2A01G560500 chr7D 94.444 54 2 1 299 352 620009756 620009808 6.770000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G560500 chr2A 762644347 762647295 2948 False 5446.00 5446 100.000000 1 2949 1 chr2A.!!$F1 2948
1 TraesCS2A01G560500 chrUn 234385314 234388243 2929 False 745.25 2091 88.253500 1 2465 4 chrUn.!!$F1 2464
2 TraesCS2A01G560500 chr2D 637421551 637424637 3086 True 490.00 1807 87.885333 1 2384 6 chr2D.!!$R3 2383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 1694 0.180406 GGTGTCAGTGAGGGTGTTGT 59.820 55.0 0.0 0.0 0.00 3.32 F
1210 2283 0.036875 TCTCGTGAGCTCACCTGAGA 59.963 55.0 33.1 33.1 44.74 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1681 2790 0.034337 TGCGGTTGTACTTCCTGGAC 59.966 55.0 0.00 0.0 0.00 4.02 R
2473 3675 0.037697 TCTGAGCCGTACGCAACAAT 60.038 50.0 10.49 0.0 41.38 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.289133 GCAGGAAAACTTCGGAGAGACT 60.289 50.000 0.00 0.00 38.43 3.24
94 95 2.776913 GGAGAGACCGCCTTCTCCG 61.777 68.421 10.34 0.00 42.81 4.63
168 806 2.361610 CCAAGCTTCCGGCACCAT 60.362 61.111 0.00 0.00 44.79 3.55
188 826 1.302271 AAAACTTCCGAGGGACCGC 60.302 57.895 0.00 0.00 0.00 5.68
196 834 3.839432 GAGGGACCGCCTTCTCCG 61.839 72.222 0.00 0.00 37.31 4.63
284 927 6.030548 GCATGAGCATATACCAGAAGTAGA 57.969 41.667 0.00 0.00 41.58 2.59
285 928 6.459066 GCATGAGCATATACCAGAAGTAGAA 58.541 40.000 0.00 0.00 41.58 2.10
347 991 1.630878 AGAAGAAACAGGGCCACTAGG 59.369 52.381 6.18 0.00 38.23 3.02
348 992 1.351350 GAAGAAACAGGGCCACTAGGT 59.649 52.381 6.18 0.00 37.19 3.08
349 993 0.693049 AGAAACAGGGCCACTAGGTG 59.307 55.000 6.18 0.00 37.19 4.00
350 994 0.960861 GAAACAGGGCCACTAGGTGC 60.961 60.000 6.18 0.00 37.19 5.01
351 995 1.715019 AAACAGGGCCACTAGGTGCA 61.715 55.000 6.18 0.00 37.19 4.57
352 996 2.129555 AACAGGGCCACTAGGTGCAG 62.130 60.000 6.18 0.86 37.19 4.41
355 999 2.124942 GGCCACTAGGTGCAGCTC 60.125 66.667 23.94 7.39 37.19 4.09
358 1020 0.322008 GCCACTAGGTGCAGCTCTTT 60.322 55.000 23.94 4.75 37.19 2.52
362 1024 2.234908 CACTAGGTGCAGCTCTTTAGGT 59.765 50.000 23.94 9.78 0.00 3.08
369 1031 3.620821 GTGCAGCTCTTTAGGTTGAGATC 59.379 47.826 0.00 0.00 32.44 2.75
373 1035 5.426504 CAGCTCTTTAGGTTGAGATCATGT 58.573 41.667 0.00 0.00 32.44 3.21
380 1042 4.148128 AGGTTGAGATCATGTAGCAAGG 57.852 45.455 0.00 0.00 0.00 3.61
381 1043 3.521126 AGGTTGAGATCATGTAGCAAGGT 59.479 43.478 0.00 0.00 0.00 3.50
382 1044 3.624861 GGTTGAGATCATGTAGCAAGGTG 59.375 47.826 0.00 0.00 0.00 4.00
384 1046 4.824479 TGAGATCATGTAGCAAGGTGAA 57.176 40.909 0.00 0.00 0.00 3.18
385 1047 5.164620 TGAGATCATGTAGCAAGGTGAAA 57.835 39.130 0.00 0.00 0.00 2.69
395 1113 6.222389 TGTAGCAAGGTGAAAATGAAAATGG 58.778 36.000 0.00 0.00 0.00 3.16
404 1122 8.631797 AGGTGAAAATGAAAATGGAAATTTTGG 58.368 29.630 1.37 0.00 33.54 3.28
488 1206 5.556915 TGTACTCCCACAAGAATTTGGTAG 58.443 41.667 0.00 0.00 38.66 3.18
489 1207 4.724279 ACTCCCACAAGAATTTGGTAGT 57.276 40.909 0.00 0.00 38.66 2.73
490 1208 5.836024 ACTCCCACAAGAATTTGGTAGTA 57.164 39.130 0.00 0.00 38.66 1.82
526 1244 0.182537 TACTGCTTGTGCCACTGGTT 59.817 50.000 0.00 0.00 38.71 3.67
543 1261 5.473504 CACTGGTTATTTGGCAGTAGAAACT 59.526 40.000 0.00 0.00 35.91 2.66
601 1636 3.238108 AGAAGTGTCCTTGATGTAGCG 57.762 47.619 0.00 0.00 0.00 4.26
602 1637 2.826128 AGAAGTGTCCTTGATGTAGCGA 59.174 45.455 0.00 0.00 0.00 4.93
603 1638 3.258372 AGAAGTGTCCTTGATGTAGCGAA 59.742 43.478 0.00 0.00 0.00 4.70
611 1660 2.779755 TGATGTAGCGAATGGGTGTT 57.220 45.000 0.00 0.00 0.00 3.32
641 1690 0.250467 CCTTGGTGTCAGTGAGGGTG 60.250 60.000 0.00 0.00 0.00 4.61
645 1694 0.180406 GGTGTCAGTGAGGGTGTTGT 59.820 55.000 0.00 0.00 0.00 3.32
648 1697 1.134521 TGTCAGTGAGGGTGTTGTGTC 60.135 52.381 0.00 0.00 0.00 3.67
669 1718 1.002142 CTGCGTTATCCATGCATGTGG 60.002 52.381 24.58 13.01 46.75 4.17
705 1754 4.072088 GCGCCACGTTTGAGTCCG 62.072 66.667 0.00 0.00 0.00 4.79
708 1758 2.424302 CCACGTTTGAGTCCGGGT 59.576 61.111 0.00 0.00 0.00 5.28
757 1808 1.597742 CATGGAAATGACTAGGGGCG 58.402 55.000 0.00 0.00 0.00 6.13
798 1849 1.609783 CCACCCAATCCACCTCTCC 59.390 63.158 0.00 0.00 0.00 3.71
811 1862 1.272203 ACCTCTCCGCTTTCTCTCTCA 60.272 52.381 0.00 0.00 0.00 3.27
858 1909 3.804036 CCACGTACATCTCTCTCTCTCT 58.196 50.000 0.00 0.00 0.00 3.10
859 1910 3.807622 CCACGTACATCTCTCTCTCTCTC 59.192 52.174 0.00 0.00 0.00 3.20
860 1911 4.442893 CCACGTACATCTCTCTCTCTCTCT 60.443 50.000 0.00 0.00 0.00 3.10
913 1965 3.849064 CGGAGGAGGAGCTCGAAT 58.151 61.111 7.83 0.00 0.00 3.34
914 1966 1.657556 CGGAGGAGGAGCTCGAATC 59.342 63.158 7.83 5.67 0.00 2.52
915 1967 1.801309 CGGAGGAGGAGCTCGAATCC 61.801 65.000 18.73 18.73 37.07 3.01
944 2004 3.715097 GGAGCAGCAGCAGGAGGT 61.715 66.667 3.17 0.00 45.49 3.85
1157 2224 2.025898 CTCTTCCTCCCTCGTAACTCC 58.974 57.143 0.00 0.00 0.00 3.85
1159 2226 2.176889 CTTCCTCCCTCGTAACTCCAA 58.823 52.381 0.00 0.00 0.00 3.53
1160 2227 1.553706 TCCTCCCTCGTAACTCCAAC 58.446 55.000 0.00 0.00 0.00 3.77
1179 2252 4.319118 CCAACAACTCGCTTCTTCTTCTTC 60.319 45.833 0.00 0.00 0.00 2.87
1181 2254 4.698575 ACAACTCGCTTCTTCTTCTTCTT 58.301 39.130 0.00 0.00 0.00 2.52
1182 2255 4.747605 ACAACTCGCTTCTTCTTCTTCTTC 59.252 41.667 0.00 0.00 0.00 2.87
1184 2257 5.208463 ACTCGCTTCTTCTTCTTCTTCTT 57.792 39.130 0.00 0.00 0.00 2.52
1185 2258 4.987912 ACTCGCTTCTTCTTCTTCTTCTTG 59.012 41.667 0.00 0.00 0.00 3.02
1186 2259 4.950050 TCGCTTCTTCTTCTTCTTCTTGT 58.050 39.130 0.00 0.00 0.00 3.16
1193 2266 6.644347 TCTTCTTCTTCTTCTTGTGTTGTCT 58.356 36.000 0.00 0.00 0.00 3.41
1194 2267 6.758886 TCTTCTTCTTCTTCTTGTGTTGTCTC 59.241 38.462 0.00 0.00 0.00 3.36
1196 2269 4.386867 TCTTCTTCTTGTGTTGTCTCGT 57.613 40.909 0.00 0.00 0.00 4.18
1207 2280 0.315251 TTGTCTCGTGAGCTCACCTG 59.685 55.000 35.07 27.50 43.66 4.00
1208 2281 0.537371 TGTCTCGTGAGCTCACCTGA 60.537 55.000 35.07 29.00 43.66 3.86
1209 2282 0.170116 GTCTCGTGAGCTCACCTGAG 59.830 60.000 35.07 32.61 43.66 3.35
1210 2283 0.036875 TCTCGTGAGCTCACCTGAGA 59.963 55.000 33.10 33.10 44.74 3.27
1211 2284 0.884514 CTCGTGAGCTCACCTGAGAA 59.115 55.000 35.07 16.07 44.74 2.87
1212 2285 0.598562 TCGTGAGCTCACCTGAGAAC 59.401 55.000 35.07 13.19 44.74 3.01
1213 2286 0.315251 CGTGAGCTCACCTGAGAACA 59.685 55.000 35.07 0.46 44.74 3.18
1214 2287 1.668337 CGTGAGCTCACCTGAGAACAG 60.668 57.143 35.07 17.60 44.74 3.16
1215 2288 1.615883 GTGAGCTCACCTGAGAACAGA 59.384 52.381 32.55 0.00 44.74 3.41
1216 2289 1.891811 TGAGCTCACCTGAGAACAGAG 59.108 52.381 13.74 0.00 46.03 3.35
1217 2290 1.892474 GAGCTCACCTGAGAACAGAGT 59.108 52.381 9.40 0.00 46.03 3.24
1218 2291 1.617850 AGCTCACCTGAGAACAGAGTG 59.382 52.381 6.49 0.00 46.03 3.51
1219 2292 1.337635 GCTCACCTGAGAACAGAGTGG 60.338 57.143 6.49 0.00 46.03 4.00
1220 2293 0.681733 TCACCTGAGAACAGAGTGGC 59.318 55.000 0.00 0.00 46.03 5.01
1221 2294 0.394192 CACCTGAGAACAGAGTGGCA 59.606 55.000 0.00 0.00 46.03 4.92
1222 2295 0.683973 ACCTGAGAACAGAGTGGCAG 59.316 55.000 0.00 0.00 46.03 4.85
1681 2790 1.374758 GGTGCACTTCCACTCCTCG 60.375 63.158 17.98 0.00 36.03 4.63
1685 2794 1.816863 GCACTTCCACTCCTCGTCCA 61.817 60.000 0.00 0.00 0.00 4.02
1687 2796 0.900647 ACTTCCACTCCTCGTCCAGG 60.901 60.000 0.00 0.00 45.15 4.45
1768 2906 2.842496 TCCTCCTCTGTCATGATTTGCT 59.158 45.455 0.00 0.00 0.00 3.91
1769 2907 3.265221 TCCTCCTCTGTCATGATTTGCTT 59.735 43.478 0.00 0.00 0.00 3.91
1770 2908 4.471025 TCCTCCTCTGTCATGATTTGCTTA 59.529 41.667 0.00 0.00 0.00 3.09
1771 2909 5.131642 TCCTCCTCTGTCATGATTTGCTTAT 59.868 40.000 0.00 0.00 0.00 1.73
1772 2910 6.327365 TCCTCCTCTGTCATGATTTGCTTATA 59.673 38.462 0.00 0.00 0.00 0.98
1773 2911 7.016957 TCCTCCTCTGTCATGATTTGCTTATAT 59.983 37.037 0.00 0.00 0.00 0.86
1774 2912 8.316946 CCTCCTCTGTCATGATTTGCTTATATA 58.683 37.037 0.00 0.00 0.00 0.86
1775 2913 9.887629 CTCCTCTGTCATGATTTGCTTATATAT 57.112 33.333 0.00 0.00 0.00 0.86
2009 3188 5.461032 AGATTTGAGAGATAGGGTAAGCG 57.539 43.478 0.00 0.00 0.00 4.68
2043 3222 3.249917 GCTCGTGAGAAAGAGAGAAAGG 58.750 50.000 0.00 0.00 41.32 3.11
2103 3282 3.555586 GGTCATTCTTTGCATTGCCTTGT 60.556 43.478 6.12 0.00 0.00 3.16
2104 3283 4.060205 GTCATTCTTTGCATTGCCTTGTT 58.940 39.130 6.12 0.00 0.00 2.83
2105 3284 4.059511 TCATTCTTTGCATTGCCTTGTTG 58.940 39.130 6.12 0.00 0.00 3.33
2141 3323 3.077359 CTGGACACCATTCTTCAGTTCC 58.923 50.000 0.00 0.00 30.82 3.62
2169 3357 5.637006 TGTACATTACTGCCAACCAAATC 57.363 39.130 0.00 0.00 0.00 2.17
2203 3391 5.565592 TCACCTTGTTATAAGCAAGCATG 57.434 39.130 16.20 15.59 41.27 4.06
2227 3415 1.681264 CCCCCTTGTTTATCGAATGCC 59.319 52.381 0.00 0.00 0.00 4.40
2243 3431 1.132640 GCCGACGACATTTGCTGAC 59.867 57.895 0.00 0.00 0.00 3.51
2255 3443 5.634896 ACATTTGCTGACTTGATTTCGATC 58.365 37.500 0.00 0.00 0.00 3.69
2263 3451 3.364062 ACTTGATTTCGATCGCTACTCG 58.636 45.455 11.09 0.00 40.15 4.18
2275 3465 2.130395 CGCTACTCGAGTACCGTCATA 58.870 52.381 25.26 6.24 41.67 2.15
2287 3477 7.228108 TCGAGTACCGTCATATGTTTTCTATCT 59.772 37.037 1.90 0.00 39.75 1.98
2302 3492 7.068103 TGTTTTCTATCTTTTTCTCACCAGCAA 59.932 33.333 0.00 0.00 0.00 3.91
2309 3499 3.052082 CTCACCAGCAAGGCACCG 61.052 66.667 0.00 0.00 43.14 4.94
2331 3521 3.427863 GCTCTTGCTGCAAATTTCTCAAC 59.572 43.478 16.74 0.00 36.03 3.18
2336 3526 6.809689 TCTTGCTGCAAATTTCTCAACATATG 59.190 34.615 16.74 0.00 0.00 1.78
2338 3528 6.457355 TGCTGCAAATTTCTCAACATATGTT 58.543 32.000 15.47 15.47 39.12 2.71
2342 3537 7.092079 TGCAAATTTCTCAACATATGTTCCTG 58.908 34.615 18.25 8.80 35.83 3.86
2419 3620 6.884295 TGTTTGAGCTACTATTGCCTTGTAAT 59.116 34.615 0.00 0.00 0.00 1.89
2420 3621 8.044309 TGTTTGAGCTACTATTGCCTTGTAATA 58.956 33.333 0.00 0.00 0.00 0.98
2427 3628 7.878127 GCTACTATTGCCTTGTAATAATCCTCA 59.122 37.037 0.00 0.00 0.00 3.86
2431 3632 7.902920 ATTGCCTTGTAATAATCCTCAATGT 57.097 32.000 0.00 0.00 0.00 2.71
2454 3656 2.056094 GCTGCAACAAAGCTAGTTGG 57.944 50.000 24.77 14.81 44.88 3.77
2465 3667 6.739112 ACAAAGCTAGTTGGTTTCTTTGATC 58.261 36.000 17.98 0.00 43.57 2.92
2466 3668 6.321181 ACAAAGCTAGTTGGTTTCTTTGATCA 59.679 34.615 17.98 0.00 43.57 2.92
2467 3669 6.566197 AAGCTAGTTGGTTTCTTTGATCAG 57.434 37.500 0.00 0.00 31.57 2.90
2468 3670 4.457257 AGCTAGTTGGTTTCTTTGATCAGC 59.543 41.667 0.00 0.00 0.00 4.26
2469 3671 4.457257 GCTAGTTGGTTTCTTTGATCAGCT 59.543 41.667 0.00 0.00 0.00 4.24
2470 3672 5.048434 GCTAGTTGGTTTCTTTGATCAGCTT 60.048 40.000 0.00 0.00 0.00 3.74
2471 3673 6.149474 GCTAGTTGGTTTCTTTGATCAGCTTA 59.851 38.462 0.00 0.00 0.00 3.09
2472 3674 7.148171 GCTAGTTGGTTTCTTTGATCAGCTTAT 60.148 37.037 0.00 0.00 0.00 1.73
2473 3675 9.383519 CTAGTTGGTTTCTTTGATCAGCTTATA 57.616 33.333 0.00 0.00 0.00 0.98
2474 3676 8.814038 AGTTGGTTTCTTTGATCAGCTTATAT 57.186 30.769 0.00 0.00 0.00 0.86
2475 3677 9.247861 AGTTGGTTTCTTTGATCAGCTTATATT 57.752 29.630 0.00 0.00 0.00 1.28
2476 3678 9.294030 GTTGGTTTCTTTGATCAGCTTATATTG 57.706 33.333 0.00 0.00 0.00 1.90
2477 3679 8.579850 TGGTTTCTTTGATCAGCTTATATTGT 57.420 30.769 0.00 0.00 0.00 2.71
2478 3680 9.023962 TGGTTTCTTTGATCAGCTTATATTGTT 57.976 29.630 0.00 0.00 0.00 2.83
2479 3681 9.294030 GGTTTCTTTGATCAGCTTATATTGTTG 57.706 33.333 0.00 0.00 0.00 3.33
2480 3682 8.801913 GTTTCTTTGATCAGCTTATATTGTTGC 58.198 33.333 0.00 0.00 0.00 4.17
2481 3683 6.718388 TCTTTGATCAGCTTATATTGTTGCG 58.282 36.000 0.00 0.00 0.00 4.85
2482 3684 6.316140 TCTTTGATCAGCTTATATTGTTGCGT 59.684 34.615 0.00 0.00 0.00 5.24
2483 3685 7.494298 TCTTTGATCAGCTTATATTGTTGCGTA 59.506 33.333 0.00 0.00 0.00 4.42
2484 3686 6.525121 TGATCAGCTTATATTGTTGCGTAC 57.475 37.500 0.00 0.00 0.00 3.67
2485 3687 5.174943 TGATCAGCTTATATTGTTGCGTACG 59.825 40.000 11.84 11.84 0.00 3.67
2486 3688 3.799963 TCAGCTTATATTGTTGCGTACGG 59.200 43.478 18.39 0.00 0.00 4.02
2487 3689 2.542595 AGCTTATATTGTTGCGTACGGC 59.457 45.455 18.39 9.98 43.96 5.68
2488 3690 2.542595 GCTTATATTGTTGCGTACGGCT 59.457 45.455 18.39 0.00 44.05 5.52
2489 3691 3.362693 GCTTATATTGTTGCGTACGGCTC 60.363 47.826 18.39 0.36 44.05 4.70
2490 3692 2.303163 ATATTGTTGCGTACGGCTCA 57.697 45.000 18.39 3.44 44.05 4.26
2491 3693 1.635844 TATTGTTGCGTACGGCTCAG 58.364 50.000 18.39 0.00 44.05 3.35
2492 3694 0.037697 ATTGTTGCGTACGGCTCAGA 60.038 50.000 18.39 0.00 44.05 3.27
2493 3695 0.942410 TTGTTGCGTACGGCTCAGAC 60.942 55.000 18.39 8.16 44.05 3.51
2494 3696 1.080705 GTTGCGTACGGCTCAGACT 60.081 57.895 18.39 0.00 44.05 3.24
2495 3697 1.071567 GTTGCGTACGGCTCAGACTC 61.072 60.000 18.39 0.00 44.05 3.36
2496 3698 1.241990 TTGCGTACGGCTCAGACTCT 61.242 55.000 18.39 0.00 44.05 3.24
2497 3699 1.226435 GCGTACGGCTCAGACTCTG 60.226 63.158 18.39 0.00 39.11 3.35
2498 3700 1.645704 GCGTACGGCTCAGACTCTGA 61.646 60.000 18.39 8.50 38.25 3.27
2499 3701 1.018148 CGTACGGCTCAGACTCTGAT 58.982 55.000 7.57 0.00 39.92 2.90
2500 3702 1.402259 CGTACGGCTCAGACTCTGATT 59.598 52.381 7.57 0.00 39.92 2.57
2501 3703 2.159366 CGTACGGCTCAGACTCTGATTT 60.159 50.000 7.57 0.00 39.92 2.17
2502 3704 2.376808 ACGGCTCAGACTCTGATTTG 57.623 50.000 9.26 4.92 39.92 2.32
2503 3705 1.620819 ACGGCTCAGACTCTGATTTGT 59.379 47.619 9.26 5.49 39.92 2.83
2504 3706 1.998315 CGGCTCAGACTCTGATTTGTG 59.002 52.381 9.26 0.00 39.92 3.33
2505 3707 2.354259 GGCTCAGACTCTGATTTGTGG 58.646 52.381 9.26 0.00 39.92 4.17
2506 3708 2.289945 GGCTCAGACTCTGATTTGTGGT 60.290 50.000 9.26 0.00 39.92 4.16
2507 3709 3.406764 GCTCAGACTCTGATTTGTGGTT 58.593 45.455 9.26 0.00 39.92 3.67
2508 3710 3.188048 GCTCAGACTCTGATTTGTGGTTG 59.812 47.826 9.26 0.00 39.92 3.77
2509 3711 3.141398 TCAGACTCTGATTTGTGGTTGC 58.859 45.455 4.50 0.00 35.39 4.17
2510 3712 2.880268 CAGACTCTGATTTGTGGTTGCA 59.120 45.455 0.00 0.00 32.44 4.08
2511 3713 3.316029 CAGACTCTGATTTGTGGTTGCAA 59.684 43.478 0.00 0.00 32.44 4.08
2512 3714 3.316308 AGACTCTGATTTGTGGTTGCAAC 59.684 43.478 21.59 21.59 0.00 4.17
2513 3715 3.023119 ACTCTGATTTGTGGTTGCAACA 58.977 40.909 29.55 13.95 0.00 3.33
2514 3716 3.446873 ACTCTGATTTGTGGTTGCAACAA 59.553 39.130 29.55 17.93 35.78 2.83
2515 3717 3.779759 TCTGATTTGTGGTTGCAACAAC 58.220 40.909 27.16 27.16 37.26 3.32
2516 3718 3.194329 TCTGATTTGTGGTTGCAACAACA 59.806 39.130 31.51 31.51 40.95 3.33
2517 3719 3.519579 TGATTTGTGGTTGCAACAACAG 58.480 40.909 32.55 0.00 43.30 3.16
2518 3720 1.719600 TTTGTGGTTGCAACAACAGC 58.280 45.000 32.55 16.12 43.30 4.40
2519 3721 0.457509 TTGTGGTTGCAACAACAGCG 60.458 50.000 32.55 0.00 43.30 5.18
2520 3722 1.308783 TGTGGTTGCAACAACAGCGA 61.309 50.000 31.51 12.70 37.91 4.93
2521 3723 0.592247 GTGGTTGCAACAACAGCGAG 60.592 55.000 28.53 0.00 32.96 5.03
2522 3724 1.029408 TGGTTGCAACAACAGCGAGT 61.029 50.000 29.55 0.00 33.85 4.18
2523 3725 0.592247 GGTTGCAACAACAGCGAGTG 60.592 55.000 29.55 0.00 33.85 3.51
2524 3726 0.592247 GTTGCAACAACAGCGAGTGG 60.592 55.000 24.52 0.00 33.85 4.00
2525 3727 0.746204 TTGCAACAACAGCGAGTGGA 60.746 50.000 0.00 0.00 33.85 4.02
2526 3728 0.534877 TGCAACAACAGCGAGTGGAT 60.535 50.000 0.00 0.00 33.85 3.41
2527 3729 0.110056 GCAACAACAGCGAGTGGATG 60.110 55.000 0.00 0.00 38.25 3.51
2528 3730 1.511850 CAACAACAGCGAGTGGATGA 58.488 50.000 0.00 0.00 35.55 2.92
2529 3731 1.462283 CAACAACAGCGAGTGGATGAG 59.538 52.381 0.00 0.00 35.55 2.90
2530 3732 0.671781 ACAACAGCGAGTGGATGAGC 60.672 55.000 0.00 0.00 35.55 4.26
2531 3733 0.390866 CAACAGCGAGTGGATGAGCT 60.391 55.000 0.00 0.00 41.07 4.09
2532 3734 0.322975 AACAGCGAGTGGATGAGCTT 59.677 50.000 0.00 0.00 37.94 3.74
2533 3735 0.322975 ACAGCGAGTGGATGAGCTTT 59.677 50.000 0.00 0.00 37.94 3.51
2534 3736 0.725686 CAGCGAGTGGATGAGCTTTG 59.274 55.000 0.00 0.00 37.94 2.77
2535 3737 0.322975 AGCGAGTGGATGAGCTTTGT 59.677 50.000 0.00 0.00 36.41 2.83
2536 3738 1.160137 GCGAGTGGATGAGCTTTGTT 58.840 50.000 0.00 0.00 0.00 2.83
2537 3739 2.028112 AGCGAGTGGATGAGCTTTGTTA 60.028 45.455 0.00 0.00 36.41 2.41
2538 3740 2.939103 GCGAGTGGATGAGCTTTGTTAT 59.061 45.455 0.00 0.00 0.00 1.89
2539 3741 3.242543 GCGAGTGGATGAGCTTTGTTATG 60.243 47.826 0.00 0.00 0.00 1.90
2540 3742 4.183865 CGAGTGGATGAGCTTTGTTATGA 58.816 43.478 0.00 0.00 0.00 2.15
2541 3743 4.631377 CGAGTGGATGAGCTTTGTTATGAA 59.369 41.667 0.00 0.00 0.00 2.57
2542 3744 5.446473 CGAGTGGATGAGCTTTGTTATGAAC 60.446 44.000 0.00 0.00 0.00 3.18
2543 3745 5.316167 AGTGGATGAGCTTTGTTATGAACA 58.684 37.500 0.00 0.00 40.21 3.18
2555 3757 6.721571 TTGTTATGAACAAGCACTAGTAGC 57.278 37.500 0.00 1.88 45.79 3.58
2556 3758 6.037786 TGTTATGAACAAGCACTAGTAGCT 57.962 37.500 12.32 12.32 45.97 3.32
2557 3759 5.869344 TGTTATGAACAAGCACTAGTAGCTG 59.131 40.000 17.01 13.78 42.53 4.24
2558 3760 4.543590 ATGAACAAGCACTAGTAGCTGT 57.456 40.909 17.01 14.23 42.53 4.40
2559 3761 3.653344 TGAACAAGCACTAGTAGCTGTG 58.347 45.455 17.01 17.17 42.53 3.66
2560 3762 3.320826 TGAACAAGCACTAGTAGCTGTGA 59.679 43.478 17.01 8.16 42.53 3.58
2561 3763 4.202212 TGAACAAGCACTAGTAGCTGTGAA 60.202 41.667 17.01 9.01 42.53 3.18
2562 3764 4.543590 ACAAGCACTAGTAGCTGTGAAT 57.456 40.909 17.01 2.78 42.53 2.57
2563 3765 4.899502 ACAAGCACTAGTAGCTGTGAATT 58.100 39.130 17.01 2.21 42.53 2.17
2564 3766 4.692625 ACAAGCACTAGTAGCTGTGAATTG 59.307 41.667 17.01 13.30 42.53 2.32
2565 3767 4.808414 AGCACTAGTAGCTGTGAATTGA 57.192 40.909 15.98 0.00 41.61 2.57
2566 3768 5.152623 AGCACTAGTAGCTGTGAATTGAA 57.847 39.130 15.98 0.00 41.61 2.69
2567 3769 5.738909 AGCACTAGTAGCTGTGAATTGAAT 58.261 37.500 15.98 0.00 41.61 2.57
2568 3770 6.176183 AGCACTAGTAGCTGTGAATTGAATT 58.824 36.000 15.98 0.00 41.61 2.17
2569 3771 7.331026 AGCACTAGTAGCTGTGAATTGAATTA 58.669 34.615 15.98 0.00 41.61 1.40
2570 3772 7.989741 AGCACTAGTAGCTGTGAATTGAATTAT 59.010 33.333 15.98 0.00 41.61 1.28
2571 3773 8.279103 GCACTAGTAGCTGTGAATTGAATTATC 58.721 37.037 6.12 0.00 36.38 1.75
2572 3774 8.483218 CACTAGTAGCTGTGAATTGAATTATCG 58.517 37.037 0.00 0.00 36.38 2.92
2573 3775 6.292389 AGTAGCTGTGAATTGAATTATCGC 57.708 37.500 0.00 0.00 0.00 4.58
2574 3776 6.051717 AGTAGCTGTGAATTGAATTATCGCT 58.948 36.000 0.00 0.16 0.00 4.93
2575 3777 5.415415 AGCTGTGAATTGAATTATCGCTC 57.585 39.130 0.00 0.00 0.00 5.03
2576 3778 4.025396 AGCTGTGAATTGAATTATCGCTCG 60.025 41.667 0.00 0.00 0.00 5.03
2577 3779 4.260375 GCTGTGAATTGAATTATCGCTCGT 60.260 41.667 0.00 0.00 0.00 4.18
2578 3780 5.051039 GCTGTGAATTGAATTATCGCTCGTA 60.051 40.000 0.00 0.00 0.00 3.43
2579 3781 6.510746 TGTGAATTGAATTATCGCTCGTAG 57.489 37.500 0.00 0.00 0.00 3.51
2580 3782 6.270064 TGTGAATTGAATTATCGCTCGTAGA 58.730 36.000 0.00 0.00 0.00 2.59
2581 3783 6.923508 TGTGAATTGAATTATCGCTCGTAGAT 59.076 34.615 0.00 0.00 33.89 1.98
2582 3784 7.096065 TGTGAATTGAATTATCGCTCGTAGATG 60.096 37.037 0.00 0.00 33.89 2.90
2583 3785 7.114953 GTGAATTGAATTATCGCTCGTAGATGA 59.885 37.037 0.00 0.00 33.89 2.92
2584 3786 7.327032 TGAATTGAATTATCGCTCGTAGATGAG 59.673 37.037 0.00 0.00 39.05 2.90
2590 3792 3.043419 CTCGTAGATGAGCCCGGG 58.957 66.667 19.09 19.09 33.89 5.73
2591 3793 3.214250 CTCGTAGATGAGCCCGGGC 62.214 68.421 39.29 39.29 37.36 6.13
2609 3811 4.147219 GGGCTCCGAAATTGAATAATCG 57.853 45.455 6.38 6.38 35.19 3.34
2610 3812 3.564225 GGGCTCCGAAATTGAATAATCGT 59.436 43.478 10.88 0.00 33.65 3.73
2611 3813 4.036380 GGGCTCCGAAATTGAATAATCGTT 59.964 41.667 10.88 0.00 33.65 3.85
2612 3814 5.237779 GGGCTCCGAAATTGAATAATCGTTA 59.762 40.000 10.88 1.22 33.65 3.18
2613 3815 6.363473 GGCTCCGAAATTGAATAATCGTTAG 58.637 40.000 10.88 9.15 33.65 2.34
2614 3816 6.018180 GGCTCCGAAATTGAATAATCGTTAGT 60.018 38.462 10.88 0.00 33.65 2.24
2615 3817 7.170320 GGCTCCGAAATTGAATAATCGTTAGTA 59.830 37.037 10.88 0.00 33.65 1.82
2616 3818 8.215132 GCTCCGAAATTGAATAATCGTTAGTAG 58.785 37.037 10.88 4.00 33.65 2.57
2617 3819 8.068893 TCCGAAATTGAATAATCGTTAGTAGC 57.931 34.615 10.88 0.00 33.65 3.58
2618 3820 7.170320 TCCGAAATTGAATAATCGTTAGTAGCC 59.830 37.037 10.88 0.00 33.65 3.93
2619 3821 7.001922 CGAAATTGAATAATCGTTAGTAGCCG 58.998 38.462 5.45 0.00 0.00 5.52
2620 3822 5.840940 ATTGAATAATCGTTAGTAGCCGC 57.159 39.130 0.00 0.00 0.00 6.53
2621 3823 4.310357 TGAATAATCGTTAGTAGCCGCA 57.690 40.909 0.00 0.00 0.00 5.69
2622 3824 4.046462 TGAATAATCGTTAGTAGCCGCAC 58.954 43.478 0.00 0.00 0.00 5.34
2623 3825 3.720949 ATAATCGTTAGTAGCCGCACA 57.279 42.857 0.00 0.00 0.00 4.57
2624 3826 2.596904 AATCGTTAGTAGCCGCACAT 57.403 45.000 0.00 0.00 0.00 3.21
2625 3827 2.135664 ATCGTTAGTAGCCGCACATC 57.864 50.000 0.00 0.00 0.00 3.06
2626 3828 1.100510 TCGTTAGTAGCCGCACATCT 58.899 50.000 0.00 0.00 0.00 2.90
2627 3829 1.475280 TCGTTAGTAGCCGCACATCTT 59.525 47.619 0.00 0.00 0.00 2.40
2628 3830 1.852895 CGTTAGTAGCCGCACATCTTC 59.147 52.381 0.00 0.00 0.00 2.87
2629 3831 2.479730 CGTTAGTAGCCGCACATCTTCT 60.480 50.000 0.00 0.00 0.00 2.85
2630 3832 3.117046 GTTAGTAGCCGCACATCTTCTC 58.883 50.000 0.00 0.00 0.00 2.87
2631 3833 0.461961 AGTAGCCGCACATCTTCTCC 59.538 55.000 0.00 0.00 0.00 3.71
2632 3834 0.175760 GTAGCCGCACATCTTCTCCA 59.824 55.000 0.00 0.00 0.00 3.86
2633 3835 0.461548 TAGCCGCACATCTTCTCCAG 59.538 55.000 0.00 0.00 0.00 3.86
2634 3836 1.817099 GCCGCACATCTTCTCCAGG 60.817 63.158 0.00 0.00 0.00 4.45
2635 3837 1.900351 CCGCACATCTTCTCCAGGA 59.100 57.895 0.00 0.00 0.00 3.86
2636 3838 0.467384 CCGCACATCTTCTCCAGGAT 59.533 55.000 0.00 0.00 0.00 3.24
2637 3839 1.579698 CGCACATCTTCTCCAGGATG 58.420 55.000 0.00 0.00 43.30 3.51
2667 3869 4.778904 TCGAAAGAAATTTAGTTGCACCG 58.221 39.130 0.00 0.00 37.03 4.94
2668 3870 4.273969 TCGAAAGAAATTTAGTTGCACCGT 59.726 37.500 0.00 0.00 37.03 4.83
2669 3871 4.378616 CGAAAGAAATTTAGTTGCACCGTG 59.621 41.667 0.00 0.00 0.00 4.94
2670 3872 3.282831 AGAAATTTAGTTGCACCGTGC 57.717 42.857 16.93 16.93 45.29 5.34
2683 3885 3.449227 CGTGCGGCTCCCTCTGTA 61.449 66.667 0.00 0.00 0.00 2.74
2684 3886 2.978824 GTGCGGCTCCCTCTGTAA 59.021 61.111 0.00 0.00 0.00 2.41
2685 3887 1.295423 GTGCGGCTCCCTCTGTAAA 59.705 57.895 0.00 0.00 0.00 2.01
2686 3888 0.741221 GTGCGGCTCCCTCTGTAAAG 60.741 60.000 0.00 0.00 0.00 1.85
2687 3889 0.902984 TGCGGCTCCCTCTGTAAAGA 60.903 55.000 0.00 0.00 0.00 2.52
2688 3890 0.249398 GCGGCTCCCTCTGTAAAGAA 59.751 55.000 0.00 0.00 0.00 2.52
2689 3891 1.338769 GCGGCTCCCTCTGTAAAGAAA 60.339 52.381 0.00 0.00 0.00 2.52
2690 3892 2.681097 GCGGCTCCCTCTGTAAAGAAAT 60.681 50.000 0.00 0.00 0.00 2.17
2691 3893 3.431766 GCGGCTCCCTCTGTAAAGAAATA 60.432 47.826 0.00 0.00 0.00 1.40
2692 3894 4.743955 GCGGCTCCCTCTGTAAAGAAATAT 60.744 45.833 0.00 0.00 0.00 1.28
2693 3895 5.510861 GCGGCTCCCTCTGTAAAGAAATATA 60.511 44.000 0.00 0.00 0.00 0.86
2694 3896 6.159988 CGGCTCCCTCTGTAAAGAAATATAG 58.840 44.000 0.00 0.00 0.00 1.31
2695 3897 6.015350 CGGCTCCCTCTGTAAAGAAATATAGA 60.015 42.308 0.00 0.00 0.00 1.98
2696 3898 7.382898 GGCTCCCTCTGTAAAGAAATATAGAG 58.617 42.308 0.00 0.00 39.51 2.43
2697 3899 6.871492 GCTCCCTCTGTAAAGAAATATAGAGC 59.129 42.308 0.00 0.00 38.87 4.09
2698 3900 6.982852 TCCCTCTGTAAAGAAATATAGAGCG 58.017 40.000 0.00 0.00 38.87 5.03
2699 3901 6.776116 TCCCTCTGTAAAGAAATATAGAGCGA 59.224 38.462 0.00 0.00 38.87 4.93
2700 3902 7.040340 TCCCTCTGTAAAGAAATATAGAGCGAG 60.040 40.741 0.00 0.00 38.87 5.03
2701 3903 7.255660 CCCTCTGTAAAGAAATATAGAGCGAGT 60.256 40.741 0.00 0.00 38.87 4.18
2702 3904 7.593273 CCTCTGTAAAGAAATATAGAGCGAGTG 59.407 40.741 0.00 0.00 38.87 3.51
2703 3905 7.997482 TCTGTAAAGAAATATAGAGCGAGTGT 58.003 34.615 0.00 0.00 0.00 3.55
2704 3906 9.117183 TCTGTAAAGAAATATAGAGCGAGTGTA 57.883 33.333 0.00 0.00 0.00 2.90
2705 3907 9.171701 CTGTAAAGAAATATAGAGCGAGTGTAC 57.828 37.037 0.00 0.00 0.00 2.90
2706 3908 8.900781 TGTAAAGAAATATAGAGCGAGTGTACT 58.099 33.333 0.00 0.00 0.00 2.73
2707 3909 9.733219 GTAAAGAAATATAGAGCGAGTGTACTT 57.267 33.333 0.00 0.00 0.00 2.24
2708 3910 8.859517 AAAGAAATATAGAGCGAGTGTACTTC 57.140 34.615 0.00 0.00 0.00 3.01
2709 3911 7.811117 AGAAATATAGAGCGAGTGTACTTCT 57.189 36.000 0.00 0.00 0.00 2.85
2710 3912 8.905660 AGAAATATAGAGCGAGTGTACTTCTA 57.094 34.615 0.00 0.00 0.00 2.10
2711 3913 9.339850 AGAAATATAGAGCGAGTGTACTTCTAA 57.660 33.333 0.00 0.00 0.00 2.10
2712 3914 9.947669 GAAATATAGAGCGAGTGTACTTCTAAA 57.052 33.333 0.00 0.00 0.00 1.85
2719 3921 8.077386 AGAGCGAGTGTACTTCTAAATATAAGC 58.923 37.037 0.00 0.00 0.00 3.09
2720 3922 7.146648 AGCGAGTGTACTTCTAAATATAAGCC 58.853 38.462 0.00 0.00 0.00 4.35
2721 3923 6.365518 GCGAGTGTACTTCTAAATATAAGCCC 59.634 42.308 0.00 0.00 0.00 5.19
2722 3924 7.659186 CGAGTGTACTTCTAAATATAAGCCCT 58.341 38.462 0.00 0.00 0.00 5.19
2723 3925 8.142551 CGAGTGTACTTCTAAATATAAGCCCTT 58.857 37.037 0.00 0.00 0.00 3.95
2724 3926 9.833917 GAGTGTACTTCTAAATATAAGCCCTTT 57.166 33.333 0.00 0.00 0.00 3.11
2743 3945 9.785982 AGCCCTTTTAGAGATTTCAATATAGAC 57.214 33.333 0.00 0.00 0.00 2.59
2744 3946 9.785982 GCCCTTTTAGAGATTTCAATATAGACT 57.214 33.333 0.00 0.00 0.00 3.24
2752 3954 8.353684 AGAGATTTCAATATAGACTACACACGG 58.646 37.037 0.00 0.00 0.00 4.94
2753 3955 8.234136 AGATTTCAATATAGACTACACACGGA 57.766 34.615 0.00 0.00 0.00 4.69
2754 3956 8.861086 AGATTTCAATATAGACTACACACGGAT 58.139 33.333 0.00 0.00 0.00 4.18
2755 3957 8.818141 ATTTCAATATAGACTACACACGGATG 57.182 34.615 0.00 0.00 0.00 3.51
2756 3958 6.954487 TCAATATAGACTACACACGGATGT 57.046 37.500 0.00 0.00 40.80 3.06
2757 3959 8.454570 TTCAATATAGACTACACACGGATGTA 57.545 34.615 1.65 1.65 36.72 2.29
2758 3960 8.631480 TCAATATAGACTACACACGGATGTAT 57.369 34.615 1.97 0.00 36.72 2.29
2759 3961 9.729281 TCAATATAGACTACACACGGATGTATA 57.271 33.333 1.97 0.00 36.72 1.47
2764 3966 7.670009 AGACTACACACGGATGTATATAGAC 57.330 40.000 1.97 0.00 36.72 2.59
2765 3967 6.368243 AGACTACACACGGATGTATATAGACG 59.632 42.308 1.97 0.00 36.72 4.18
2766 3968 5.994054 ACTACACACGGATGTATATAGACGT 59.006 40.000 0.00 0.00 36.72 4.34
2767 3969 7.154656 ACTACACACGGATGTATATAGACGTA 58.845 38.462 0.00 0.00 36.72 3.57
2768 3970 7.821359 ACTACACACGGATGTATATAGACGTAT 59.179 37.037 0.00 0.00 36.72 3.06
2769 3971 7.444629 ACACACGGATGTATATAGACGTATT 57.555 36.000 0.00 0.00 36.72 1.89
2770 3972 7.879070 ACACACGGATGTATATAGACGTATTT 58.121 34.615 0.00 0.00 36.72 1.40
2771 3973 8.355169 ACACACGGATGTATATAGACGTATTTT 58.645 33.333 0.00 0.00 36.72 1.82
2772 3974 9.830294 CACACGGATGTATATAGACGTATTTTA 57.170 33.333 0.00 0.00 36.72 1.52
2785 3987 6.931838 AGACGTATTTTAGAGTGTGGATTCA 58.068 36.000 0.00 0.00 0.00 2.57
2786 3988 7.556844 AGACGTATTTTAGAGTGTGGATTCAT 58.443 34.615 0.00 0.00 0.00 2.57
2787 3989 8.041323 AGACGTATTTTAGAGTGTGGATTCATT 58.959 33.333 0.00 0.00 0.00 2.57
2788 3990 8.561738 ACGTATTTTAGAGTGTGGATTCATTT 57.438 30.769 0.00 0.00 0.00 2.32
2789 3991 9.661563 ACGTATTTTAGAGTGTGGATTCATTTA 57.338 29.630 0.00 0.00 0.00 1.40
2795 3997 9.638239 TTTAGAGTGTGGATTCATTTATTTTGC 57.362 29.630 0.00 0.00 0.00 3.68
2796 3998 7.472334 AGAGTGTGGATTCATTTATTTTGCT 57.528 32.000 0.00 0.00 0.00 3.91
2797 3999 7.899973 AGAGTGTGGATTCATTTATTTTGCTT 58.100 30.769 0.00 0.00 0.00 3.91
2798 4000 8.031277 AGAGTGTGGATTCATTTATTTTGCTTC 58.969 33.333 0.00 0.00 0.00 3.86
2799 4001 6.808212 AGTGTGGATTCATTTATTTTGCTTCG 59.192 34.615 0.00 0.00 0.00 3.79
2800 4002 6.586082 GTGTGGATTCATTTATTTTGCTTCGT 59.414 34.615 0.00 0.00 0.00 3.85
2801 4003 7.753132 GTGTGGATTCATTTATTTTGCTTCGTA 59.247 33.333 0.00 0.00 0.00 3.43
2802 4004 8.465999 TGTGGATTCATTTATTTTGCTTCGTAT 58.534 29.630 0.00 0.00 0.00 3.06
2803 4005 8.745837 GTGGATTCATTTATTTTGCTTCGTATG 58.254 33.333 0.00 0.00 0.00 2.39
2804 4006 8.465999 TGGATTCATTTATTTTGCTTCGTATGT 58.534 29.630 0.00 0.00 0.00 2.29
2805 4007 9.944663 GGATTCATTTATTTTGCTTCGTATGTA 57.055 29.630 0.00 0.00 0.00 2.29
2808 4010 9.982291 TTCATTTATTTTGCTTCGTATGTAGTC 57.018 29.630 0.00 0.00 0.00 2.59
2809 4011 9.378551 TCATTTATTTTGCTTCGTATGTAGTCT 57.621 29.630 0.00 0.00 0.00 3.24
2813 4015 9.811995 TTATTTTGCTTCGTATGTAGTCTATGT 57.188 29.630 0.00 0.00 0.00 2.29
2814 4016 8.718102 ATTTTGCTTCGTATGTAGTCTATGTT 57.282 30.769 0.00 0.00 0.00 2.71
2815 4017 7.520119 TTTGCTTCGTATGTAGTCTATGTTG 57.480 36.000 0.00 0.00 0.00 3.33
2816 4018 6.203808 TGCTTCGTATGTAGTCTATGTTGT 57.796 37.500 0.00 0.00 0.00 3.32
2817 4019 7.324354 TGCTTCGTATGTAGTCTATGTTGTA 57.676 36.000 0.00 0.00 0.00 2.41
2818 4020 7.937649 TGCTTCGTATGTAGTCTATGTTGTAT 58.062 34.615 0.00 0.00 0.00 2.29
2819 4021 8.410912 TGCTTCGTATGTAGTCTATGTTGTATT 58.589 33.333 0.00 0.00 0.00 1.89
2820 4022 8.903723 GCTTCGTATGTAGTCTATGTTGTATTC 58.096 37.037 0.00 0.00 0.00 1.75
2821 4023 8.998558 TTCGTATGTAGTCTATGTTGTATTCG 57.001 34.615 0.00 0.00 0.00 3.34
2822 4024 7.073883 TCGTATGTAGTCTATGTTGTATTCGC 58.926 38.462 0.00 0.00 0.00 4.70
2823 4025 7.041576 TCGTATGTAGTCTATGTTGTATTCGCT 60.042 37.037 0.00 0.00 0.00 4.93
2824 4026 8.225777 CGTATGTAGTCTATGTTGTATTCGCTA 58.774 37.037 0.00 0.00 0.00 4.26
2825 4027 9.888878 GTATGTAGTCTATGTTGTATTCGCTAA 57.111 33.333 0.00 0.00 0.00 3.09
2827 4029 9.811995 ATGTAGTCTATGTTGTATTCGCTAAAA 57.188 29.630 0.00 0.00 0.00 1.52
2828 4030 9.811995 TGTAGTCTATGTTGTATTCGCTAAAAT 57.188 29.630 0.00 0.00 0.00 1.82
2830 4032 8.142994 AGTCTATGTTGTATTCGCTAAAATGG 57.857 34.615 0.00 0.00 0.00 3.16
2831 4033 6.851330 GTCTATGTTGTATTCGCTAAAATGGC 59.149 38.462 0.00 0.00 0.00 4.40
2832 4034 5.835113 ATGTTGTATTCGCTAAAATGGCT 57.165 34.783 0.00 0.00 0.00 4.75
2833 4035 5.637006 TGTTGTATTCGCTAAAATGGCTT 57.363 34.783 0.00 0.00 0.00 4.35
2834 4036 6.745159 TGTTGTATTCGCTAAAATGGCTTA 57.255 33.333 0.00 0.00 0.00 3.09
2835 4037 7.328277 TGTTGTATTCGCTAAAATGGCTTAT 57.672 32.000 0.00 0.00 0.00 1.73
2836 4038 8.439993 TGTTGTATTCGCTAAAATGGCTTATA 57.560 30.769 0.00 0.00 0.00 0.98
2837 4039 9.062524 TGTTGTATTCGCTAAAATGGCTTATAT 57.937 29.630 0.00 0.00 0.00 0.86
2838 4040 9.893305 GTTGTATTCGCTAAAATGGCTTATATT 57.107 29.630 0.00 0.00 0.00 1.28
2843 4045 8.911918 TTCGCTAAAATGGCTTATATTTAGGA 57.088 30.769 0.00 0.00 36.39 2.94
2844 4046 8.911918 TCGCTAAAATGGCTTATATTTAGGAA 57.088 30.769 0.00 0.00 36.39 3.36
2845 4047 8.780249 TCGCTAAAATGGCTTATATTTAGGAAC 58.220 33.333 0.00 0.00 36.39 3.62
2846 4048 7.744715 CGCTAAAATGGCTTATATTTAGGAACG 59.255 37.037 0.00 0.00 36.39 3.95
2847 4049 8.021396 GCTAAAATGGCTTATATTTAGGAACGG 58.979 37.037 0.00 0.00 36.39 4.44
2848 4050 9.280174 CTAAAATGGCTTATATTTAGGAACGGA 57.720 33.333 0.00 0.00 33.69 4.69
2849 4051 7.745620 AAATGGCTTATATTTAGGAACGGAG 57.254 36.000 0.00 0.00 0.00 4.63
2850 4052 5.223449 TGGCTTATATTTAGGAACGGAGG 57.777 43.478 0.00 0.00 0.00 4.30
2851 4053 4.041198 TGGCTTATATTTAGGAACGGAGGG 59.959 45.833 0.00 0.00 0.00 4.30
2852 4054 4.285260 GGCTTATATTTAGGAACGGAGGGA 59.715 45.833 0.00 0.00 0.00 4.20
2853 4055 5.480205 GCTTATATTTAGGAACGGAGGGAG 58.520 45.833 0.00 0.00 0.00 4.30
2854 4056 5.011840 GCTTATATTTAGGAACGGAGGGAGT 59.988 44.000 0.00 0.00 0.00 3.85
2855 4057 6.210185 GCTTATATTTAGGAACGGAGGGAGTA 59.790 42.308 0.00 0.00 0.00 2.59
2856 4058 7.577236 GCTTATATTTAGGAACGGAGGGAGTAG 60.577 44.444 0.00 0.00 0.00 2.57
2857 4059 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
2858 4060 2.431954 TAGGAACGGAGGGAGTAGTG 57.568 55.000 0.00 0.00 0.00 2.74
2859 4061 0.324460 AGGAACGGAGGGAGTAGTGG 60.324 60.000 0.00 0.00 0.00 4.00
2860 4062 0.324091 GGAACGGAGGGAGTAGTGGA 60.324 60.000 0.00 0.00 0.00 4.02
2861 4063 1.688627 GGAACGGAGGGAGTAGTGGAT 60.689 57.143 0.00 0.00 0.00 3.41
2862 4064 1.682323 GAACGGAGGGAGTAGTGGATC 59.318 57.143 0.00 0.00 0.00 3.36
2863 4065 0.106116 ACGGAGGGAGTAGTGGATCC 60.106 60.000 4.20 4.20 34.64 3.36
2864 4066 0.106167 CGGAGGGAGTAGTGGATCCA 60.106 60.000 11.44 11.44 37.33 3.41
2865 4067 1.710816 GGAGGGAGTAGTGGATCCAG 58.289 60.000 16.81 0.00 37.33 3.86
2866 4068 1.218196 GGAGGGAGTAGTGGATCCAGA 59.782 57.143 16.81 2.93 37.33 3.86
2867 4069 2.359355 GGAGGGAGTAGTGGATCCAGAA 60.359 54.545 16.81 2.78 37.33 3.02
2868 4070 2.962421 GAGGGAGTAGTGGATCCAGAAG 59.038 54.545 16.81 0.00 37.33 2.85
2869 4071 2.316372 AGGGAGTAGTGGATCCAGAAGT 59.684 50.000 16.81 9.10 37.33 3.01
2870 4072 3.532232 AGGGAGTAGTGGATCCAGAAGTA 59.468 47.826 16.81 1.64 37.33 2.24
2871 4073 4.016479 AGGGAGTAGTGGATCCAGAAGTAA 60.016 45.833 16.81 0.00 37.33 2.24
2872 4074 4.099727 GGGAGTAGTGGATCCAGAAGTAAC 59.900 50.000 16.81 7.27 37.33 2.50
2873 4075 4.957327 GGAGTAGTGGATCCAGAAGTAACT 59.043 45.833 16.81 11.95 35.54 2.24
2874 4076 6.127793 GGAGTAGTGGATCCAGAAGTAACTA 58.872 44.000 16.81 8.31 35.54 2.24
2875 4077 6.606395 GGAGTAGTGGATCCAGAAGTAACTAA 59.394 42.308 16.81 0.00 35.54 2.24
2876 4078 7.123847 GGAGTAGTGGATCCAGAAGTAACTAAA 59.876 40.741 16.81 0.00 35.54 1.85
2877 4079 8.431910 AGTAGTGGATCCAGAAGTAACTAAAA 57.568 34.615 16.81 0.00 0.00 1.52
2878 4080 8.877195 AGTAGTGGATCCAGAAGTAACTAAAAA 58.123 33.333 16.81 0.00 0.00 1.94
2879 4081 7.981102 AGTGGATCCAGAAGTAACTAAAAAC 57.019 36.000 16.81 0.00 0.00 2.43
2880 4082 7.514721 AGTGGATCCAGAAGTAACTAAAAACA 58.485 34.615 16.81 0.00 0.00 2.83
2881 4083 7.996644 AGTGGATCCAGAAGTAACTAAAAACAA 59.003 33.333 16.81 0.00 0.00 2.83
2882 4084 8.626526 GTGGATCCAGAAGTAACTAAAAACAAA 58.373 33.333 16.81 0.00 0.00 2.83
2883 4085 8.626526 TGGATCCAGAAGTAACTAAAAACAAAC 58.373 33.333 11.44 0.00 0.00 2.93
2884 4086 8.847196 GGATCCAGAAGTAACTAAAAACAAACT 58.153 33.333 6.95 0.00 0.00 2.66
2885 4087 9.665264 GATCCAGAAGTAACTAAAAACAAACTG 57.335 33.333 0.00 0.00 0.00 3.16
2886 4088 7.992008 TCCAGAAGTAACTAAAAACAAACTGG 58.008 34.615 0.00 0.00 40.56 4.00
2887 4089 7.612633 TCCAGAAGTAACTAAAAACAAACTGGT 59.387 33.333 0.00 0.00 40.25 4.00
2888 4090 8.248253 CCAGAAGTAACTAAAAACAAACTGGTT 58.752 33.333 0.00 0.00 36.35 3.67
2889 4091 9.634163 CAGAAGTAACTAAAAACAAACTGGTTT 57.366 29.630 0.00 0.00 39.27 3.27
2899 4101 2.137523 CAAACTGGTTTGCATGCTTCC 58.862 47.619 20.33 17.51 42.66 3.46
2900 4102 0.681175 AACTGGTTTGCATGCTTCCC 59.319 50.000 20.33 15.23 0.00 3.97
2901 4103 0.469705 ACTGGTTTGCATGCTTCCCA 60.470 50.000 20.33 18.76 0.00 4.37
2902 4104 0.037975 CTGGTTTGCATGCTTCCCAC 60.038 55.000 20.33 7.87 0.00 4.61
2903 4105 1.293179 GGTTTGCATGCTTCCCACC 59.707 57.895 20.33 13.02 0.00 4.61
2904 4106 1.470996 GGTTTGCATGCTTCCCACCA 61.471 55.000 20.33 0.00 0.00 4.17
2905 4107 0.609662 GTTTGCATGCTTCCCACCAT 59.390 50.000 20.33 0.00 0.00 3.55
2906 4108 1.824230 GTTTGCATGCTTCCCACCATA 59.176 47.619 20.33 0.00 0.00 2.74
2907 4109 2.228545 TTGCATGCTTCCCACCATAA 57.771 45.000 20.33 0.00 0.00 1.90
2908 4110 2.457813 TGCATGCTTCCCACCATAAT 57.542 45.000 20.33 0.00 0.00 1.28
2909 4111 2.033372 TGCATGCTTCCCACCATAATG 58.967 47.619 20.33 0.00 0.00 1.90
2910 4112 2.034124 GCATGCTTCCCACCATAATGT 58.966 47.619 11.37 0.00 0.00 2.71
2911 4113 2.431782 GCATGCTTCCCACCATAATGTT 59.568 45.455 11.37 0.00 0.00 2.71
2912 4114 3.738899 GCATGCTTCCCACCATAATGTTG 60.739 47.826 11.37 0.00 0.00 3.33
2913 4115 3.168035 TGCTTCCCACCATAATGTTGT 57.832 42.857 0.00 0.00 0.00 3.32
2914 4116 2.824936 TGCTTCCCACCATAATGTTGTG 59.175 45.455 0.00 0.00 0.00 3.33
2915 4117 2.417243 GCTTCCCACCATAATGTTGTGC 60.417 50.000 0.00 0.00 0.00 4.57
2916 4118 2.593925 TCCCACCATAATGTTGTGCA 57.406 45.000 0.00 0.00 0.00 4.57
2917 4119 3.098774 TCCCACCATAATGTTGTGCAT 57.901 42.857 0.00 0.00 40.03 3.96
2918 4120 4.242336 TCCCACCATAATGTTGTGCATA 57.758 40.909 0.00 0.00 36.67 3.14
2919 4121 4.802307 TCCCACCATAATGTTGTGCATAT 58.198 39.130 0.00 0.00 36.67 1.78
2920 4122 5.946486 TCCCACCATAATGTTGTGCATATA 58.054 37.500 0.00 0.00 36.67 0.86
2921 4123 5.767665 TCCCACCATAATGTTGTGCATATAC 59.232 40.000 0.00 0.00 36.67 1.47
2922 4124 5.534278 CCCACCATAATGTTGTGCATATACA 59.466 40.000 0.00 0.00 36.67 2.29
2923 4125 6.209192 CCCACCATAATGTTGTGCATATACAT 59.791 38.462 0.00 0.00 36.67 2.29
2924 4126 7.255906 CCCACCATAATGTTGTGCATATACATT 60.256 37.037 20.46 20.46 43.02 2.71
2925 4127 8.143193 CCACCATAATGTTGTGCATATACATTT 58.857 33.333 21.30 11.59 41.36 2.32
2926 4128 9.531942 CACCATAATGTTGTGCATATACATTTT 57.468 29.630 21.30 14.54 41.36 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.697147 TTTCCTGCTGGCCGAAGCTT 62.697 55.000 15.52 0.00 43.90 3.74
1 2 2.697147 TTTTCCTGCTGGCCGAAGCT 62.697 55.000 15.52 0.00 43.90 3.74
2 3 2.268076 TTTTCCTGCTGGCCGAAGC 61.268 57.895 8.13 8.13 43.82 3.86
4 5 0.467290 AAGTTTTCCTGCTGGCCGAA 60.467 50.000 4.42 0.00 0.00 4.30
5 6 0.889186 GAAGTTTTCCTGCTGGCCGA 60.889 55.000 4.42 0.00 0.00 5.54
6 7 1.581447 GAAGTTTTCCTGCTGGCCG 59.419 57.895 4.42 0.00 0.00 6.13
7 8 1.581447 CGAAGTTTTCCTGCTGGCC 59.419 57.895 4.42 0.00 0.00 5.36
8 9 0.889186 TCCGAAGTTTTCCTGCTGGC 60.889 55.000 4.42 0.00 0.00 4.85
9 10 1.160137 CTCCGAAGTTTTCCTGCTGG 58.840 55.000 2.58 2.58 0.00 4.85
10 11 2.072298 CTCTCCGAAGTTTTCCTGCTG 58.928 52.381 0.00 0.00 0.00 4.41
11 12 1.971357 TCTCTCCGAAGTTTTCCTGCT 59.029 47.619 0.00 0.00 0.00 4.24
12 13 2.070028 GTCTCTCCGAAGTTTTCCTGC 58.930 52.381 0.00 0.00 0.00 4.85
64 65 3.314541 GGTCTCTCCGAAGTTTTGCTA 57.685 47.619 0.00 0.00 0.00 3.49
162 800 1.200020 CCTCGGAAGTTTTGATGGTGC 59.800 52.381 0.00 0.00 0.00 5.01
168 806 0.034337 CGGTCCCTCGGAAGTTTTGA 59.966 55.000 0.00 0.00 31.38 2.69
236 874 2.224233 CCCATCACATGAGGTCTAGCAG 60.224 54.545 0.00 0.00 0.00 4.24
347 991 3.045601 TCTCAACCTAAAGAGCTGCAC 57.954 47.619 1.02 0.00 0.00 4.57
348 992 3.261643 TGATCTCAACCTAAAGAGCTGCA 59.738 43.478 1.02 0.00 0.00 4.41
349 993 3.866651 TGATCTCAACCTAAAGAGCTGC 58.133 45.455 0.00 0.00 0.00 5.25
350 994 5.426504 ACATGATCTCAACCTAAAGAGCTG 58.573 41.667 0.00 0.00 0.00 4.24
351 995 5.690464 ACATGATCTCAACCTAAAGAGCT 57.310 39.130 0.00 0.00 0.00 4.09
352 996 5.465056 GCTACATGATCTCAACCTAAAGAGC 59.535 44.000 0.00 0.00 0.00 4.09
355 999 6.259608 CCTTGCTACATGATCTCAACCTAAAG 59.740 42.308 0.00 0.00 0.00 1.85
358 1020 4.716784 ACCTTGCTACATGATCTCAACCTA 59.283 41.667 0.00 0.00 0.00 3.08
362 1024 4.824479 TCACCTTGCTACATGATCTCAA 57.176 40.909 0.00 0.00 0.00 3.02
369 1031 7.148540 CCATTTTCATTTTCACCTTGCTACATG 60.149 37.037 0.00 0.00 0.00 3.21
373 1035 6.662865 TCCATTTTCATTTTCACCTTGCTA 57.337 33.333 0.00 0.00 0.00 3.49
380 1042 9.800433 AACCAAAATTTCCATTTTCATTTTCAC 57.200 25.926 0.00 0.00 40.09 3.18
381 1043 9.798994 CAACCAAAATTTCCATTTTCATTTTCA 57.201 25.926 0.00 0.00 40.09 2.69
382 1044 8.754096 GCAACCAAAATTTCCATTTTCATTTTC 58.246 29.630 0.00 0.00 40.09 2.29
384 1046 7.921745 CAGCAACCAAAATTTCCATTTTCATTT 59.078 29.630 0.00 0.00 40.09 2.32
385 1047 7.068470 ACAGCAACCAAAATTTCCATTTTCATT 59.932 29.630 0.00 0.00 40.09 2.57
395 1113 5.815222 ACCTTGTTACAGCAACCAAAATTTC 59.185 36.000 0.00 0.00 36.20 2.17
404 1122 3.317993 ACCAATCACCTTGTTACAGCAAC 59.682 43.478 0.00 0.00 37.67 4.17
488 1206 8.383318 AGCAGTAAATTACACCATGATGATAC 57.617 34.615 5.89 0.00 0.00 2.24
489 1207 8.839343 CAAGCAGTAAATTACACCATGATGATA 58.161 33.333 5.89 0.00 0.00 2.15
490 1208 7.340232 ACAAGCAGTAAATTACACCATGATGAT 59.660 33.333 5.89 0.00 0.00 2.45
526 1244 8.685838 AAAACAGTAGTTTCTACTGCCAAATA 57.314 30.769 26.60 0.00 46.79 1.40
578 1324 4.563184 CGCTACATCAAGGACACTTCTAAC 59.437 45.833 0.00 0.00 33.81 2.34
580 1326 4.014406 TCGCTACATCAAGGACACTTCTA 58.986 43.478 0.00 0.00 33.81 2.10
582 1328 3.232213 TCGCTACATCAAGGACACTTC 57.768 47.619 0.00 0.00 33.81 3.01
584 1330 3.525537 CATTCGCTACATCAAGGACACT 58.474 45.455 0.00 0.00 0.00 3.55
585 1331 2.609459 CCATTCGCTACATCAAGGACAC 59.391 50.000 0.00 0.00 0.00 3.67
601 1636 0.469144 ACCCACCACAACACCCATTC 60.469 55.000 0.00 0.00 0.00 2.67
602 1637 0.469144 GACCCACCACAACACCCATT 60.469 55.000 0.00 0.00 0.00 3.16
603 1638 1.152830 GACCCACCACAACACCCAT 59.847 57.895 0.00 0.00 0.00 4.00
611 1660 2.369015 ACCAAGGGACCCACCACA 60.369 61.111 14.60 0.00 41.20 4.17
641 1690 1.803334 TGGATAACGCAGGACACAAC 58.197 50.000 0.00 0.00 0.00 3.32
645 1694 0.251634 TGCATGGATAACGCAGGACA 59.748 50.000 0.00 0.00 0.00 4.02
648 1697 1.002142 CACATGCATGGATAACGCAGG 60.002 52.381 29.41 1.09 42.76 4.85
669 1718 2.476320 GCTCCCATTCGCTGCCTTC 61.476 63.158 0.00 0.00 0.00 3.46
697 1746 2.879233 GCTCCACACCCGGACTCAA 61.879 63.158 0.73 0.00 0.00 3.02
757 1808 2.517875 AATCCATGGCTGCCGCTC 60.518 61.111 14.98 0.00 36.09 5.03
798 1849 2.223021 CGAGAGAGTGAGAGAGAAAGCG 60.223 54.545 0.00 0.00 0.00 4.68
811 1862 1.594194 CCTGAGCTGCACGAGAGAGT 61.594 60.000 1.02 0.00 0.00 3.24
888 1939 3.965026 CTCCTCCTCCGGTGGCTGA 62.965 68.421 18.03 14.31 36.40 4.26
980 2043 2.028420 TGGGAATCTCGCATCAACAG 57.972 50.000 0.00 0.00 34.23 3.16
1157 2224 4.509600 AGAAGAAGAAGAAGCGAGTTGTTG 59.490 41.667 0.00 0.00 0.00 3.33
1159 2226 4.329462 AGAAGAAGAAGAAGCGAGTTGT 57.671 40.909 0.00 0.00 0.00 3.32
1160 2227 4.987912 AGAAGAAGAAGAAGAAGCGAGTTG 59.012 41.667 0.00 0.00 0.00 3.16
1179 2252 2.219674 GCTCACGAGACAACACAAGAAG 59.780 50.000 0.00 0.00 0.00 2.85
1181 2254 1.409064 AGCTCACGAGACAACACAAGA 59.591 47.619 0.00 0.00 0.00 3.02
1182 2255 1.789464 GAGCTCACGAGACAACACAAG 59.211 52.381 9.40 0.00 0.00 3.16
1184 2257 0.744281 TGAGCTCACGAGACAACACA 59.256 50.000 13.74 0.00 0.00 3.72
1185 2258 1.132588 GTGAGCTCACGAGACAACAC 58.867 55.000 29.84 5.09 37.10 3.32
1186 2259 3.569916 GTGAGCTCACGAGACAACA 57.430 52.632 29.84 0.00 37.10 3.33
1196 2269 1.891811 CTCTGTTCTCAGGTGAGCTCA 59.108 52.381 13.74 13.74 41.80 4.26
1207 2280 1.001860 AGAAGCTGCCACTCTGTTCTC 59.998 52.381 0.00 0.00 0.00 2.87
1208 2281 1.001860 GAGAAGCTGCCACTCTGTTCT 59.998 52.381 13.75 7.00 0.00 3.01
1209 2282 1.437625 GAGAAGCTGCCACTCTGTTC 58.562 55.000 13.75 2.75 0.00 3.18
1210 2283 0.036022 GGAGAAGCTGCCACTCTGTT 59.964 55.000 18.21 0.00 0.00 3.16
1211 2284 1.676384 GGAGAAGCTGCCACTCTGT 59.324 57.895 18.21 0.00 0.00 3.41
1212 2285 1.078567 GGGAGAAGCTGCCACTCTG 60.079 63.158 18.21 0.00 41.77 3.35
1213 2286 1.229464 AGGGAGAAGCTGCCACTCT 60.229 57.895 18.21 9.23 44.71 3.24
1214 2287 1.078567 CAGGGAGAAGCTGCCACTC 60.079 63.158 7.72 12.97 44.71 3.51
1215 2288 1.835927 GACAGGGAGAAGCTGCCACT 61.836 60.000 7.72 0.00 44.71 4.00
1216 2289 1.376553 GACAGGGAGAAGCTGCCAC 60.377 63.158 7.72 0.00 44.71 5.01
1217 2290 1.537397 AGACAGGGAGAAGCTGCCA 60.537 57.895 7.72 0.00 44.71 4.92
1218 2291 1.078567 CAGACAGGGAGAAGCTGCC 60.079 63.158 0.00 0.00 42.52 4.85
1219 2292 0.673022 CACAGACAGGGAGAAGCTGC 60.673 60.000 0.00 0.00 0.00 5.25
1220 2293 0.683973 ACACAGACAGGGAGAAGCTG 59.316 55.000 0.00 0.00 0.00 4.24
1221 2294 0.972883 GACACAGACAGGGAGAAGCT 59.027 55.000 0.00 0.00 0.00 3.74
1222 2295 0.036858 GGACACAGACAGGGAGAAGC 60.037 60.000 0.00 0.00 0.00 3.86
1378 2487 1.514228 CGTGATGGTCTCCGACACG 60.514 63.158 16.99 16.99 43.78 4.49
1639 2748 4.899239 CGGGCGTCCATGAGCTCC 62.899 72.222 12.15 0.00 0.00 4.70
1681 2790 0.034337 TGCGGTTGTACTTCCTGGAC 59.966 55.000 0.00 0.00 0.00 4.02
1685 2794 0.892755 TCGATGCGGTTGTACTTCCT 59.107 50.000 0.00 0.00 0.00 3.36
1687 2796 1.654105 CACTCGATGCGGTTGTACTTC 59.346 52.381 0.00 0.00 0.00 3.01
1723 2832 2.697147 GAAGCACCTTGGTGGCCTCA 62.697 60.000 19.89 0.00 40.22 3.86
1773 2911 9.623000 TCACAACTAGTAGTAGATGCAACTATA 57.377 33.333 11.68 0.00 33.37 1.31
1774 2912 8.521170 TCACAACTAGTAGTAGATGCAACTAT 57.479 34.615 11.68 0.00 33.37 2.12
1775 2913 7.933215 TCACAACTAGTAGTAGATGCAACTA 57.067 36.000 11.68 0.00 33.37 2.24
1776 2914 6.835819 TCACAACTAGTAGTAGATGCAACT 57.164 37.500 11.68 0.86 33.37 3.16
1777 2915 7.258441 TCATCACAACTAGTAGTAGATGCAAC 58.742 38.462 22.85 0.00 34.72 4.17
1778 2916 7.404671 TCATCACAACTAGTAGTAGATGCAA 57.595 36.000 22.85 12.43 34.72 4.08
1779 2917 7.285401 TGATCATCACAACTAGTAGTAGATGCA 59.715 37.037 22.85 17.20 34.72 3.96
1780 2918 7.652727 TGATCATCACAACTAGTAGTAGATGC 58.347 38.462 22.85 15.74 34.72 3.91
1814 2957 3.355378 CCCCAAGCACATCAGAATTGTA 58.645 45.455 0.00 0.00 0.00 2.41
1815 2958 2.173519 CCCCAAGCACATCAGAATTGT 58.826 47.619 0.00 0.00 0.00 2.71
2009 3188 1.197492 TCACGAGCAATGCAACACATC 59.803 47.619 8.35 0.00 38.34 3.06
2122 3304 3.425162 AGGAACTGAAGAATGGTGTCC 57.575 47.619 0.00 0.00 37.18 4.02
2141 3323 4.094887 GGTTGGCAGTAATGTACATGTCAG 59.905 45.833 9.63 4.10 0.00 3.51
2203 3391 2.773993 TCGATAAACAAGGGGGTCAC 57.226 50.000 0.00 0.00 0.00 3.67
2227 3415 1.792367 TCAAGTCAGCAAATGTCGTCG 59.208 47.619 0.00 0.00 0.00 5.12
2243 3431 3.618698 TCGAGTAGCGATCGAAATCAAG 58.381 45.455 21.57 3.91 45.52 3.02
2263 3451 9.530633 AAAGATAGAAAACATATGACGGTACTC 57.469 33.333 10.38 0.00 0.00 2.59
2275 3465 7.231317 TGCTGGTGAGAAAAAGATAGAAAACAT 59.769 33.333 0.00 0.00 0.00 2.71
2287 3477 1.408702 GTGCCTTGCTGGTGAGAAAAA 59.591 47.619 0.00 0.00 38.35 1.94
2309 3499 3.293311 TGAGAAATTTGCAGCAAGAGC 57.707 42.857 8.12 0.00 42.56 4.09
2310 3500 4.613944 TGTTGAGAAATTTGCAGCAAGAG 58.386 39.130 8.12 0.00 0.00 2.85
2331 3521 4.741321 AACCCAATTGCAGGAACATATG 57.259 40.909 7.64 0.00 0.00 1.78
2336 3526 3.030668 CTGAAACCCAATTGCAGGAAC 57.969 47.619 7.64 0.59 0.00 3.62
2342 3537 1.273327 CCAGTCCTGAAACCCAATTGC 59.727 52.381 0.00 0.00 0.00 3.56
2384 3585 3.565902 AGTAGCTCAAACAAGGAAGTTGC 59.434 43.478 0.00 0.00 40.15 4.17
2419 3620 5.709631 TGTTGCAGCTTAACATTGAGGATTA 59.290 36.000 8.78 0.00 33.43 1.75
2420 3621 4.523943 TGTTGCAGCTTAACATTGAGGATT 59.476 37.500 8.78 0.00 33.43 3.01
2427 3628 4.326504 AGCTTTGTTGCAGCTTAACATT 57.673 36.364 12.62 0.18 45.82 2.71
2431 3632 4.261572 CCAACTAGCTTTGTTGCAGCTTAA 60.262 41.667 20.21 0.00 45.82 1.85
2454 3656 8.801913 GCAACAATATAAGCTGATCAAAGAAAC 58.198 33.333 0.00 0.00 0.00 2.78
2465 3667 3.603857 GCCGTACGCAACAATATAAGCTG 60.604 47.826 10.49 0.00 37.47 4.24
2466 3668 2.542595 GCCGTACGCAACAATATAAGCT 59.457 45.455 10.49 0.00 37.47 3.74
2467 3669 2.542595 AGCCGTACGCAACAATATAAGC 59.457 45.455 10.49 3.07 41.38 3.09
2468 3670 3.799963 TGAGCCGTACGCAACAATATAAG 59.200 43.478 10.49 0.00 41.38 1.73
2469 3671 3.783191 TGAGCCGTACGCAACAATATAA 58.217 40.909 10.49 0.00 41.38 0.98
2470 3672 3.067040 TCTGAGCCGTACGCAACAATATA 59.933 43.478 10.49 0.00 41.38 0.86
2471 3673 2.159156 TCTGAGCCGTACGCAACAATAT 60.159 45.455 10.49 0.00 41.38 1.28
2472 3674 1.202817 TCTGAGCCGTACGCAACAATA 59.797 47.619 10.49 0.00 41.38 1.90
2473 3675 0.037697 TCTGAGCCGTACGCAACAAT 60.038 50.000 10.49 0.00 41.38 2.71
2474 3676 0.942410 GTCTGAGCCGTACGCAACAA 60.942 55.000 10.49 0.00 41.38 2.83
2475 3677 1.372499 GTCTGAGCCGTACGCAACA 60.372 57.895 10.49 7.93 41.38 3.33
2476 3678 1.071567 GAGTCTGAGCCGTACGCAAC 61.072 60.000 10.49 1.03 41.38 4.17
2477 3679 1.211969 GAGTCTGAGCCGTACGCAA 59.788 57.895 10.49 0.00 41.38 4.85
2478 3680 1.674651 AGAGTCTGAGCCGTACGCA 60.675 57.895 10.49 1.43 41.38 5.24
2479 3681 1.226435 CAGAGTCTGAGCCGTACGC 60.226 63.158 15.46 5.63 32.44 4.42
2480 3682 1.018148 ATCAGAGTCTGAGCCGTACG 58.982 55.000 26.13 8.69 44.08 3.67
2481 3683 3.182967 CAAATCAGAGTCTGAGCCGTAC 58.817 50.000 26.13 0.00 44.08 3.67
2482 3684 2.826128 ACAAATCAGAGTCTGAGCCGTA 59.174 45.455 26.13 4.24 44.08 4.02
2483 3685 1.620819 ACAAATCAGAGTCTGAGCCGT 59.379 47.619 26.13 18.84 44.08 5.68
2484 3686 1.998315 CACAAATCAGAGTCTGAGCCG 59.002 52.381 26.13 18.27 44.08 5.52
2485 3687 2.289945 ACCACAAATCAGAGTCTGAGCC 60.290 50.000 26.13 0.00 44.08 4.70
2486 3688 3.051081 ACCACAAATCAGAGTCTGAGC 57.949 47.619 26.13 0.00 44.08 4.26
2487 3689 3.188048 GCAACCACAAATCAGAGTCTGAG 59.812 47.826 26.13 16.00 44.08 3.35
2488 3690 3.141398 GCAACCACAAATCAGAGTCTGA 58.859 45.455 24.66 24.66 44.99 3.27
2489 3691 2.880268 TGCAACCACAAATCAGAGTCTG 59.120 45.455 14.36 14.36 0.00 3.51
2490 3692 3.213206 TGCAACCACAAATCAGAGTCT 57.787 42.857 0.00 0.00 0.00 3.24
2491 3693 3.066621 TGTTGCAACCACAAATCAGAGTC 59.933 43.478 26.14 0.00 0.00 3.36
2492 3694 3.023119 TGTTGCAACCACAAATCAGAGT 58.977 40.909 26.14 0.00 0.00 3.24
2493 3695 3.713858 TGTTGCAACCACAAATCAGAG 57.286 42.857 26.14 0.00 0.00 3.35
2494 3696 3.194329 TGTTGTTGCAACCACAAATCAGA 59.806 39.130 28.49 8.50 32.41 3.27
2495 3697 3.519579 TGTTGTTGCAACCACAAATCAG 58.480 40.909 28.49 0.00 32.41 2.90
2496 3698 3.519579 CTGTTGTTGCAACCACAAATCA 58.480 40.909 29.60 14.85 34.65 2.57
2497 3699 2.284952 GCTGTTGTTGCAACCACAAATC 59.715 45.455 29.60 20.02 34.65 2.17
2498 3700 2.278854 GCTGTTGTTGCAACCACAAAT 58.721 42.857 29.60 0.00 34.65 2.32
2499 3701 1.719600 GCTGTTGTTGCAACCACAAA 58.280 45.000 29.60 15.22 34.65 2.83
2500 3702 0.457509 CGCTGTTGTTGCAACCACAA 60.458 50.000 29.60 16.44 34.65 3.33
2501 3703 1.138459 CGCTGTTGTTGCAACCACA 59.862 52.632 28.56 28.56 34.02 4.17
2502 3704 0.592247 CTCGCTGTTGTTGCAACCAC 60.592 55.000 26.14 24.55 0.00 4.16
2503 3705 1.029408 ACTCGCTGTTGTTGCAACCA 61.029 50.000 26.14 16.48 0.00 3.67
2504 3706 0.592247 CACTCGCTGTTGTTGCAACC 60.592 55.000 26.14 12.64 0.00 3.77
2505 3707 0.592247 CCACTCGCTGTTGTTGCAAC 60.592 55.000 22.83 22.83 0.00 4.17
2506 3708 0.746204 TCCACTCGCTGTTGTTGCAA 60.746 50.000 0.00 0.00 0.00 4.08
2507 3709 0.534877 ATCCACTCGCTGTTGTTGCA 60.535 50.000 0.00 0.00 0.00 4.08
2508 3710 0.110056 CATCCACTCGCTGTTGTTGC 60.110 55.000 0.00 0.00 0.00 4.17
2509 3711 1.462283 CTCATCCACTCGCTGTTGTTG 59.538 52.381 0.00 0.00 0.00 3.33
2510 3712 1.800805 CTCATCCACTCGCTGTTGTT 58.199 50.000 0.00 0.00 0.00 2.83
2511 3713 0.671781 GCTCATCCACTCGCTGTTGT 60.672 55.000 0.00 0.00 0.00 3.32
2512 3714 0.390866 AGCTCATCCACTCGCTGTTG 60.391 55.000 0.00 0.00 0.00 3.33
2513 3715 0.322975 AAGCTCATCCACTCGCTGTT 59.677 50.000 0.00 0.00 32.22 3.16
2514 3716 0.322975 AAAGCTCATCCACTCGCTGT 59.677 50.000 0.00 0.00 32.22 4.40
2515 3717 0.725686 CAAAGCTCATCCACTCGCTG 59.274 55.000 0.00 0.00 32.22 5.18
2516 3718 0.322975 ACAAAGCTCATCCACTCGCT 59.677 50.000 0.00 0.00 0.00 4.93
2517 3719 1.160137 AACAAAGCTCATCCACTCGC 58.840 50.000 0.00 0.00 0.00 5.03
2518 3720 4.183865 TCATAACAAAGCTCATCCACTCG 58.816 43.478 0.00 0.00 0.00 4.18
2519 3721 5.412594 TGTTCATAACAAAGCTCATCCACTC 59.587 40.000 0.00 0.00 38.72 3.51
2520 3722 5.316167 TGTTCATAACAAAGCTCATCCACT 58.684 37.500 0.00 0.00 38.72 4.00
2521 3723 5.627499 TGTTCATAACAAAGCTCATCCAC 57.373 39.130 0.00 0.00 38.72 4.02
2533 3735 5.869344 CAGCTACTAGTGCTTGTTCATAACA 59.131 40.000 14.64 0.00 38.92 2.41
2534 3736 5.869888 ACAGCTACTAGTGCTTGTTCATAAC 59.130 40.000 14.64 0.00 38.92 1.89
2535 3737 5.869344 CACAGCTACTAGTGCTTGTTCATAA 59.131 40.000 14.64 0.00 38.92 1.90
2536 3738 5.185056 TCACAGCTACTAGTGCTTGTTCATA 59.815 40.000 14.64 2.65 38.92 2.15
2537 3739 4.021104 TCACAGCTACTAGTGCTTGTTCAT 60.021 41.667 14.64 0.00 38.92 2.57
2538 3740 3.320826 TCACAGCTACTAGTGCTTGTTCA 59.679 43.478 14.64 6.01 38.92 3.18
2539 3741 3.914312 TCACAGCTACTAGTGCTTGTTC 58.086 45.455 14.64 0.00 38.92 3.18
2540 3742 4.336889 TTCACAGCTACTAGTGCTTGTT 57.663 40.909 14.64 3.29 38.92 2.83
2541 3743 4.543590 ATTCACAGCTACTAGTGCTTGT 57.456 40.909 14.64 13.20 38.92 3.16
2542 3744 4.931601 TCAATTCACAGCTACTAGTGCTTG 59.068 41.667 14.64 14.92 38.92 4.01
2543 3745 5.152623 TCAATTCACAGCTACTAGTGCTT 57.847 39.130 14.64 6.62 38.92 3.91
2544 3746 4.808414 TCAATTCACAGCTACTAGTGCT 57.192 40.909 5.39 9.69 42.06 4.40
2545 3747 6.428385 AATTCAATTCACAGCTACTAGTGC 57.572 37.500 5.39 7.40 35.76 4.40
2546 3748 8.483218 CGATAATTCAATTCACAGCTACTAGTG 58.517 37.037 5.39 0.00 37.10 2.74
2547 3749 7.169982 GCGATAATTCAATTCACAGCTACTAGT 59.830 37.037 0.00 0.00 0.00 2.57
2548 3750 7.383572 AGCGATAATTCAATTCACAGCTACTAG 59.616 37.037 0.00 0.00 0.00 2.57
2549 3751 7.210174 AGCGATAATTCAATTCACAGCTACTA 58.790 34.615 0.00 0.00 0.00 1.82
2550 3752 6.051717 AGCGATAATTCAATTCACAGCTACT 58.948 36.000 0.00 0.00 0.00 2.57
2551 3753 6.292389 AGCGATAATTCAATTCACAGCTAC 57.708 37.500 0.00 0.00 0.00 3.58
2552 3754 5.175673 CGAGCGATAATTCAATTCACAGCTA 59.824 40.000 0.00 0.00 0.00 3.32
2553 3755 4.025396 CGAGCGATAATTCAATTCACAGCT 60.025 41.667 3.02 3.02 0.00 4.24
2554 3756 4.206843 CGAGCGATAATTCAATTCACAGC 58.793 43.478 0.00 0.00 0.00 4.40
2555 3757 5.395325 ACGAGCGATAATTCAATTCACAG 57.605 39.130 0.00 0.00 0.00 3.66
2556 3758 6.270064 TCTACGAGCGATAATTCAATTCACA 58.730 36.000 0.00 0.00 0.00 3.58
2557 3759 6.749216 TCTACGAGCGATAATTCAATTCAC 57.251 37.500 0.00 0.00 0.00 3.18
2558 3760 7.145323 TCATCTACGAGCGATAATTCAATTCA 58.855 34.615 0.00 0.00 0.00 2.57
2559 3761 7.568267 TCATCTACGAGCGATAATTCAATTC 57.432 36.000 0.00 0.00 0.00 2.17
2560 3762 7.573916 CTCATCTACGAGCGATAATTCAATT 57.426 36.000 0.00 0.00 0.00 2.32
2573 3775 3.043419 CCCGGGCTCATCTACGAG 58.957 66.667 8.08 0.00 36.02 4.18
2574 3776 3.224324 GCCCGGGCTCATCTACGA 61.224 66.667 38.76 0.00 38.26 3.43
2588 3790 3.564225 ACGATTATTCAATTTCGGAGCCC 59.436 43.478 7.19 0.00 0.00 5.19
2589 3791 4.813296 ACGATTATTCAATTTCGGAGCC 57.187 40.909 7.19 0.00 0.00 4.70
2590 3792 6.945072 ACTAACGATTATTCAATTTCGGAGC 58.055 36.000 7.19 0.00 0.00 4.70
2591 3793 8.215132 GCTACTAACGATTATTCAATTTCGGAG 58.785 37.037 7.19 6.34 0.00 4.63
2592 3794 7.170320 GGCTACTAACGATTATTCAATTTCGGA 59.830 37.037 7.19 0.00 0.00 4.55
2593 3795 7.288672 GGCTACTAACGATTATTCAATTTCGG 58.711 38.462 7.19 0.00 0.00 4.30
2594 3796 7.001922 CGGCTACTAACGATTATTCAATTTCG 58.998 38.462 0.00 1.91 0.00 3.46
2595 3797 6.790825 GCGGCTACTAACGATTATTCAATTTC 59.209 38.462 0.00 0.00 0.00 2.17
2596 3798 6.259167 TGCGGCTACTAACGATTATTCAATTT 59.741 34.615 0.00 0.00 0.00 1.82
2597 3799 5.756347 TGCGGCTACTAACGATTATTCAATT 59.244 36.000 0.00 0.00 0.00 2.32
2598 3800 5.176958 GTGCGGCTACTAACGATTATTCAAT 59.823 40.000 0.00 0.00 0.00 2.57
2599 3801 4.505191 GTGCGGCTACTAACGATTATTCAA 59.495 41.667 0.00 0.00 0.00 2.69
2600 3802 4.046462 GTGCGGCTACTAACGATTATTCA 58.954 43.478 0.00 0.00 0.00 2.57
2601 3803 4.046462 TGTGCGGCTACTAACGATTATTC 58.954 43.478 0.00 0.00 0.00 1.75
2602 3804 4.049546 TGTGCGGCTACTAACGATTATT 57.950 40.909 0.00 0.00 0.00 1.40
2603 3805 3.720949 TGTGCGGCTACTAACGATTAT 57.279 42.857 0.00 0.00 0.00 1.28
2604 3806 3.317149 AGATGTGCGGCTACTAACGATTA 59.683 43.478 0.00 0.00 0.00 1.75
2605 3807 2.100916 AGATGTGCGGCTACTAACGATT 59.899 45.455 0.00 0.00 0.00 3.34
2606 3808 1.681793 AGATGTGCGGCTACTAACGAT 59.318 47.619 0.00 0.00 0.00 3.73
2607 3809 1.100510 AGATGTGCGGCTACTAACGA 58.899 50.000 0.00 0.00 0.00 3.85
2608 3810 1.852895 GAAGATGTGCGGCTACTAACG 59.147 52.381 0.00 0.00 0.00 3.18
2609 3811 3.117046 GAGAAGATGTGCGGCTACTAAC 58.883 50.000 0.00 0.00 0.00 2.34
2610 3812 2.100916 GGAGAAGATGTGCGGCTACTAA 59.899 50.000 0.00 0.00 0.00 2.24
2611 3813 1.681793 GGAGAAGATGTGCGGCTACTA 59.318 52.381 0.00 0.00 0.00 1.82
2612 3814 0.461961 GGAGAAGATGTGCGGCTACT 59.538 55.000 0.00 0.00 0.00 2.57
2613 3815 0.175760 TGGAGAAGATGTGCGGCTAC 59.824 55.000 0.00 0.00 0.00 3.58
2614 3816 0.461548 CTGGAGAAGATGTGCGGCTA 59.538 55.000 0.00 0.00 0.00 3.93
2615 3817 1.220206 CTGGAGAAGATGTGCGGCT 59.780 57.895 0.00 0.00 0.00 5.52
2616 3818 1.817099 CCTGGAGAAGATGTGCGGC 60.817 63.158 0.00 0.00 0.00 6.53
2617 3819 0.467384 ATCCTGGAGAAGATGTGCGG 59.533 55.000 1.52 0.00 0.00 5.69
2618 3820 1.579698 CATCCTGGAGAAGATGTGCG 58.420 55.000 1.52 0.00 36.06 5.34
2619 3821 1.487976 TCCATCCTGGAGAAGATGTGC 59.512 52.381 1.52 0.00 42.67 4.57
2628 3830 8.916757 TTTCTTTCGAAACAATCCATCCTGGAG 61.917 40.741 6.47 0.00 40.93 3.86
2629 3831 7.194483 TTTCTTTCGAAACAATCCATCCTGGA 61.194 38.462 6.47 0.00 41.41 3.86
2630 3832 4.009675 TCTTTCGAAACAATCCATCCTGG 58.990 43.478 6.47 0.00 39.43 4.45
2631 3833 5.627499 TTCTTTCGAAACAATCCATCCTG 57.373 39.130 6.47 0.00 0.00 3.86
2632 3834 6.840780 ATTTCTTTCGAAACAATCCATCCT 57.159 33.333 6.47 0.00 41.58 3.24
2633 3835 7.889589 AAATTTCTTTCGAAACAATCCATCC 57.110 32.000 6.47 0.00 41.58 3.51
2634 3836 9.626045 ACTAAATTTCTTTCGAAACAATCCATC 57.374 29.630 6.47 0.00 41.58 3.51
2635 3837 9.981114 AACTAAATTTCTTTCGAAACAATCCAT 57.019 25.926 6.47 2.46 41.58 3.41
2636 3838 9.243637 CAACTAAATTTCTTTCGAAACAATCCA 57.756 29.630 6.47 0.34 41.58 3.41
2637 3839 8.214472 GCAACTAAATTTCTTTCGAAACAATCC 58.786 33.333 6.47 0.00 41.58 3.01
2638 3840 8.751335 TGCAACTAAATTTCTTTCGAAACAATC 58.249 29.630 6.47 0.00 41.58 2.67
2639 3841 8.539674 GTGCAACTAAATTTCTTTCGAAACAAT 58.460 29.630 6.47 5.67 41.58 2.71
2640 3842 7.009723 GGTGCAACTAAATTTCTTTCGAAACAA 59.990 33.333 6.47 0.00 38.35 2.83
2641 3843 6.474102 GGTGCAACTAAATTTCTTTCGAAACA 59.526 34.615 6.47 0.00 38.35 2.83
2642 3844 6.344702 CGGTGCAACTAAATTTCTTTCGAAAC 60.345 38.462 6.47 0.00 38.35 2.78
2643 3845 5.683743 CGGTGCAACTAAATTTCTTTCGAAA 59.316 36.000 10.71 10.71 39.25 3.46
2644 3846 5.209240 CGGTGCAACTAAATTTCTTTCGAA 58.791 37.500 0.00 0.00 36.74 3.71
2645 3847 4.273969 ACGGTGCAACTAAATTTCTTTCGA 59.726 37.500 0.00 0.00 36.74 3.71
2646 3848 4.378616 CACGGTGCAACTAAATTTCTTTCG 59.621 41.667 0.00 0.00 36.74 3.46
2647 3849 4.148174 GCACGGTGCAACTAAATTTCTTTC 59.852 41.667 27.10 0.00 44.26 2.62
2648 3850 4.048504 GCACGGTGCAACTAAATTTCTTT 58.951 39.130 27.10 0.00 44.26 2.52
2649 3851 3.638484 GCACGGTGCAACTAAATTTCTT 58.362 40.909 27.10 0.00 44.26 2.52
2650 3852 2.350388 CGCACGGTGCAACTAAATTTCT 60.350 45.455 30.23 0.00 45.36 2.52
2651 3853 1.976045 CGCACGGTGCAACTAAATTTC 59.024 47.619 30.23 0.00 45.36 2.17
2652 3854 1.335506 CCGCACGGTGCAACTAAATTT 60.336 47.619 30.23 0.00 45.36 1.82
2653 3855 0.239879 CCGCACGGTGCAACTAAATT 59.760 50.000 30.23 0.00 45.36 1.82
2654 3856 1.873165 CCGCACGGTGCAACTAAAT 59.127 52.632 30.23 0.00 45.36 1.40
2655 3857 2.899044 GCCGCACGGTGCAACTAAA 61.899 57.895 30.23 0.00 45.36 1.85
2656 3858 3.350612 GCCGCACGGTGCAACTAA 61.351 61.111 30.23 0.00 45.36 2.24
2657 3859 4.308458 AGCCGCACGGTGCAACTA 62.308 61.111 30.23 0.00 45.36 2.24
2666 3868 2.501223 TTTACAGAGGGAGCCGCACG 62.501 60.000 0.00 0.00 0.00 5.34
2667 3869 0.741221 CTTTACAGAGGGAGCCGCAC 60.741 60.000 0.00 0.00 0.00 5.34
2668 3870 0.902984 TCTTTACAGAGGGAGCCGCA 60.903 55.000 0.00 0.00 0.00 5.69
2669 3871 0.249398 TTCTTTACAGAGGGAGCCGC 59.751 55.000 0.00 0.00 0.00 6.53
2670 3872 2.762535 TTTCTTTACAGAGGGAGCCG 57.237 50.000 0.00 0.00 0.00 5.52
2671 3873 7.304497 TCTATATTTCTTTACAGAGGGAGCC 57.696 40.000 0.00 0.00 0.00 4.70
2672 3874 6.871492 GCTCTATATTTCTTTACAGAGGGAGC 59.129 42.308 0.00 0.00 34.36 4.70
2673 3875 7.040340 TCGCTCTATATTTCTTTACAGAGGGAG 60.040 40.741 10.88 0.00 43.15 4.30
2674 3876 6.776116 TCGCTCTATATTTCTTTACAGAGGGA 59.224 38.462 10.88 10.88 44.70 4.20
2675 3877 6.982852 TCGCTCTATATTTCTTTACAGAGGG 58.017 40.000 7.03 7.03 41.71 4.30
2676 3878 7.593273 CACTCGCTCTATATTTCTTTACAGAGG 59.407 40.741 0.00 0.00 32.08 3.69
2677 3879 8.132362 ACACTCGCTCTATATTTCTTTACAGAG 58.868 37.037 0.00 0.00 34.08 3.35
2678 3880 7.997482 ACACTCGCTCTATATTTCTTTACAGA 58.003 34.615 0.00 0.00 0.00 3.41
2679 3881 9.171701 GTACACTCGCTCTATATTTCTTTACAG 57.828 37.037 0.00 0.00 0.00 2.74
2680 3882 8.900781 AGTACACTCGCTCTATATTTCTTTACA 58.099 33.333 0.00 0.00 0.00 2.41
2681 3883 9.733219 AAGTACACTCGCTCTATATTTCTTTAC 57.267 33.333 0.00 0.00 0.00 2.01
2682 3884 9.947669 GAAGTACACTCGCTCTATATTTCTTTA 57.052 33.333 0.00 0.00 0.00 1.85
2683 3885 8.688151 AGAAGTACACTCGCTCTATATTTCTTT 58.312 33.333 0.00 0.00 0.00 2.52
2684 3886 8.228035 AGAAGTACACTCGCTCTATATTTCTT 57.772 34.615 0.00 0.00 0.00 2.52
2685 3887 7.811117 AGAAGTACACTCGCTCTATATTTCT 57.189 36.000 0.00 0.00 0.00 2.52
2686 3888 9.947669 TTTAGAAGTACACTCGCTCTATATTTC 57.052 33.333 0.00 0.00 0.00 2.17
2693 3895 8.077386 GCTTATATTTAGAAGTACACTCGCTCT 58.923 37.037 0.00 0.00 0.00 4.09
2694 3896 7.326547 GGCTTATATTTAGAAGTACACTCGCTC 59.673 40.741 0.00 0.00 0.00 5.03
2695 3897 7.146648 GGCTTATATTTAGAAGTACACTCGCT 58.853 38.462 0.00 0.00 0.00 4.93
2696 3898 6.365518 GGGCTTATATTTAGAAGTACACTCGC 59.634 42.308 0.00 0.00 0.00 5.03
2697 3899 7.659186 AGGGCTTATATTTAGAAGTACACTCG 58.341 38.462 0.00 0.00 0.00 4.18
2698 3900 9.833917 AAAGGGCTTATATTTAGAAGTACACTC 57.166 33.333 0.00 0.00 0.00 3.51
2717 3919 9.785982 GTCTATATTGAAATCTCTAAAAGGGCT 57.214 33.333 0.00 0.00 0.00 5.19
2718 3920 9.785982 AGTCTATATTGAAATCTCTAAAAGGGC 57.214 33.333 0.00 0.00 0.00 5.19
2726 3928 8.353684 CCGTGTGTAGTCTATATTGAAATCTCT 58.646 37.037 0.00 0.00 0.00 3.10
2727 3929 8.350722 TCCGTGTGTAGTCTATATTGAAATCTC 58.649 37.037 0.00 0.00 0.00 2.75
2728 3930 8.234136 TCCGTGTGTAGTCTATATTGAAATCT 57.766 34.615 0.00 0.00 0.00 2.40
2729 3931 8.916654 CATCCGTGTGTAGTCTATATTGAAATC 58.083 37.037 0.00 0.00 0.00 2.17
2730 3932 8.421784 ACATCCGTGTGTAGTCTATATTGAAAT 58.578 33.333 0.00 0.00 37.14 2.17
2731 3933 7.778083 ACATCCGTGTGTAGTCTATATTGAAA 58.222 34.615 0.00 0.00 37.14 2.69
2732 3934 7.342769 ACATCCGTGTGTAGTCTATATTGAA 57.657 36.000 0.00 0.00 37.14 2.69
2733 3935 6.954487 ACATCCGTGTGTAGTCTATATTGA 57.046 37.500 0.00 0.00 37.14 2.57
2738 3940 9.381033 GTCTATATACATCCGTGTGTAGTCTAT 57.619 37.037 3.93 1.05 39.39 1.98
2739 3941 7.543520 CGTCTATATACATCCGTGTGTAGTCTA 59.456 40.741 3.93 0.00 39.39 2.59
2740 3942 6.368243 CGTCTATATACATCCGTGTGTAGTCT 59.632 42.308 3.93 0.00 39.39 3.24
2741 3943 6.146837 ACGTCTATATACATCCGTGTGTAGTC 59.853 42.308 3.93 0.00 39.39 2.59
2742 3944 5.994054 ACGTCTATATACATCCGTGTGTAGT 59.006 40.000 3.93 0.00 39.39 2.73
2743 3945 6.477669 ACGTCTATATACATCCGTGTGTAG 57.522 41.667 3.93 0.00 39.39 2.74
2744 3946 8.552083 AATACGTCTATATACATCCGTGTGTA 57.448 34.615 0.00 0.41 39.39 2.90
2745 3947 7.444629 AATACGTCTATATACATCCGTGTGT 57.555 36.000 0.00 0.00 39.39 3.72
2746 3948 8.738199 AAAATACGTCTATATACATCCGTGTG 57.262 34.615 0.00 0.00 39.39 3.82
2759 3961 8.692710 TGAATCCACACTCTAAAATACGTCTAT 58.307 33.333 0.00 0.00 0.00 1.98
2760 3962 8.058667 TGAATCCACACTCTAAAATACGTCTA 57.941 34.615 0.00 0.00 0.00 2.59
2761 3963 6.931838 TGAATCCACACTCTAAAATACGTCT 58.068 36.000 0.00 0.00 0.00 4.18
2762 3964 7.772332 ATGAATCCACACTCTAAAATACGTC 57.228 36.000 0.00 0.00 0.00 4.34
2763 3965 8.561738 AAATGAATCCACACTCTAAAATACGT 57.438 30.769 0.00 0.00 0.00 3.57
2769 3971 9.638239 GCAAAATAAATGAATCCACACTCTAAA 57.362 29.630 0.00 0.00 0.00 1.85
2770 3972 9.023962 AGCAAAATAAATGAATCCACACTCTAA 57.976 29.630 0.00 0.00 0.00 2.10
2771 3973 8.579850 AGCAAAATAAATGAATCCACACTCTA 57.420 30.769 0.00 0.00 0.00 2.43
2772 3974 7.472334 AGCAAAATAAATGAATCCACACTCT 57.528 32.000 0.00 0.00 0.00 3.24
2773 3975 7.008628 CGAAGCAAAATAAATGAATCCACACTC 59.991 37.037 0.00 0.00 0.00 3.51
2774 3976 6.808212 CGAAGCAAAATAAATGAATCCACACT 59.192 34.615 0.00 0.00 0.00 3.55
2775 3977 6.586082 ACGAAGCAAAATAAATGAATCCACAC 59.414 34.615 0.00 0.00 0.00 3.82
2776 3978 6.686630 ACGAAGCAAAATAAATGAATCCACA 58.313 32.000 0.00 0.00 0.00 4.17
2777 3979 8.745837 CATACGAAGCAAAATAAATGAATCCAC 58.254 33.333 0.00 0.00 0.00 4.02
2778 3980 8.465999 ACATACGAAGCAAAATAAATGAATCCA 58.534 29.630 0.00 0.00 0.00 3.41
2779 3981 8.856490 ACATACGAAGCAAAATAAATGAATCC 57.144 30.769 0.00 0.00 0.00 3.01
2782 3984 9.982291 GACTACATACGAAGCAAAATAAATGAA 57.018 29.630 0.00 0.00 0.00 2.57
2783 3985 9.378551 AGACTACATACGAAGCAAAATAAATGA 57.621 29.630 0.00 0.00 0.00 2.57
2787 3989 9.811995 ACATAGACTACATACGAAGCAAAATAA 57.188 29.630 0.00 0.00 0.00 1.40
2788 3990 9.811995 AACATAGACTACATACGAAGCAAAATA 57.188 29.630 0.00 0.00 0.00 1.40
2789 3991 8.604035 CAACATAGACTACATACGAAGCAAAAT 58.396 33.333 0.00 0.00 0.00 1.82
2790 3992 7.601130 ACAACATAGACTACATACGAAGCAAAA 59.399 33.333 0.00 0.00 0.00 2.44
2791 3993 7.094631 ACAACATAGACTACATACGAAGCAAA 58.905 34.615 0.00 0.00 0.00 3.68
2792 3994 6.627243 ACAACATAGACTACATACGAAGCAA 58.373 36.000 0.00 0.00 0.00 3.91
2793 3995 6.203808 ACAACATAGACTACATACGAAGCA 57.796 37.500 0.00 0.00 0.00 3.91
2794 3996 8.798748 AATACAACATAGACTACATACGAAGC 57.201 34.615 0.00 0.00 0.00 3.86
2795 3997 9.104126 CGAATACAACATAGACTACATACGAAG 57.896 37.037 0.00 0.00 0.00 3.79
2796 3998 7.588854 GCGAATACAACATAGACTACATACGAA 59.411 37.037 0.00 0.00 0.00 3.85
2797 3999 7.041576 AGCGAATACAACATAGACTACATACGA 60.042 37.037 0.00 0.00 0.00 3.43
2798 4000 7.076362 AGCGAATACAACATAGACTACATACG 58.924 38.462 0.00 0.00 0.00 3.06
2799 4001 9.888878 TTAGCGAATACAACATAGACTACATAC 57.111 33.333 0.00 0.00 0.00 2.39
2801 4003 9.811995 TTTTAGCGAATACAACATAGACTACAT 57.188 29.630 0.00 0.00 0.00 2.29
2802 4004 9.811995 ATTTTAGCGAATACAACATAGACTACA 57.188 29.630 0.00 0.00 0.00 2.74
2804 4006 9.256477 CCATTTTAGCGAATACAACATAGACTA 57.744 33.333 0.00 0.00 0.00 2.59
2805 4007 7.254795 GCCATTTTAGCGAATACAACATAGACT 60.255 37.037 0.00 0.00 0.00 3.24
2806 4008 6.851330 GCCATTTTAGCGAATACAACATAGAC 59.149 38.462 0.00 0.00 0.00 2.59
2807 4009 6.765989 AGCCATTTTAGCGAATACAACATAGA 59.234 34.615 0.00 0.00 34.64 1.98
2808 4010 6.959361 AGCCATTTTAGCGAATACAACATAG 58.041 36.000 0.00 0.00 34.64 2.23
2809 4011 6.935741 AGCCATTTTAGCGAATACAACATA 57.064 33.333 0.00 0.00 34.64 2.29
2810 4012 5.835113 AGCCATTTTAGCGAATACAACAT 57.165 34.783 0.00 0.00 34.64 2.71
2811 4013 5.637006 AAGCCATTTTAGCGAATACAACA 57.363 34.783 0.00 0.00 34.64 3.33
2812 4014 9.893305 AATATAAGCCATTTTAGCGAATACAAC 57.107 29.630 0.00 0.00 34.64 3.32
2817 4019 9.515226 TCCTAAATATAAGCCATTTTAGCGAAT 57.485 29.630 0.00 0.00 32.72 3.34
2818 4020 8.911918 TCCTAAATATAAGCCATTTTAGCGAA 57.088 30.769 0.00 0.00 32.72 4.70
2819 4021 8.780249 GTTCCTAAATATAAGCCATTTTAGCGA 58.220 33.333 0.00 0.00 32.72 4.93
2820 4022 7.744715 CGTTCCTAAATATAAGCCATTTTAGCG 59.255 37.037 0.00 0.00 32.72 4.26
2821 4023 8.021396 CCGTTCCTAAATATAAGCCATTTTAGC 58.979 37.037 0.00 0.00 32.72 3.09
2822 4024 9.280174 TCCGTTCCTAAATATAAGCCATTTTAG 57.720 33.333 0.00 0.00 33.47 1.85
2823 4025 9.280174 CTCCGTTCCTAAATATAAGCCATTTTA 57.720 33.333 0.00 0.00 0.00 1.52
2824 4026 7.230712 CCTCCGTTCCTAAATATAAGCCATTTT 59.769 37.037 0.00 0.00 0.00 1.82
2825 4027 6.715264 CCTCCGTTCCTAAATATAAGCCATTT 59.285 38.462 0.00 0.00 0.00 2.32
2826 4028 6.238648 CCTCCGTTCCTAAATATAAGCCATT 58.761 40.000 0.00 0.00 0.00 3.16
2827 4029 5.280521 CCCTCCGTTCCTAAATATAAGCCAT 60.281 44.000 0.00 0.00 0.00 4.40
2828 4030 4.041198 CCCTCCGTTCCTAAATATAAGCCA 59.959 45.833 0.00 0.00 0.00 4.75
2829 4031 4.285260 TCCCTCCGTTCCTAAATATAAGCC 59.715 45.833 0.00 0.00 0.00 4.35
2830 4032 5.011840 ACTCCCTCCGTTCCTAAATATAAGC 59.988 44.000 0.00 0.00 0.00 3.09
2831 4033 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2832 4034 7.232127 CACTACTCCCTCCGTTCCTAAATATAA 59.768 40.741 0.00 0.00 0.00 0.98
2833 4035 6.718454 CACTACTCCCTCCGTTCCTAAATATA 59.282 42.308 0.00 0.00 0.00 0.86
2834 4036 5.539193 CACTACTCCCTCCGTTCCTAAATAT 59.461 44.000 0.00 0.00 0.00 1.28
2835 4037 4.891756 CACTACTCCCTCCGTTCCTAAATA 59.108 45.833 0.00 0.00 0.00 1.40
2836 4038 3.705072 CACTACTCCCTCCGTTCCTAAAT 59.295 47.826 0.00 0.00 0.00 1.40
2837 4039 3.094572 CACTACTCCCTCCGTTCCTAAA 58.905 50.000 0.00 0.00 0.00 1.85
2838 4040 2.622452 CCACTACTCCCTCCGTTCCTAA 60.622 54.545 0.00 0.00 0.00 2.69
2839 4041 1.064166 CCACTACTCCCTCCGTTCCTA 60.064 57.143 0.00 0.00 0.00 2.94
2840 4042 0.324460 CCACTACTCCCTCCGTTCCT 60.324 60.000 0.00 0.00 0.00 3.36
2841 4043 0.324091 TCCACTACTCCCTCCGTTCC 60.324 60.000 0.00 0.00 0.00 3.62
2842 4044 1.682323 GATCCACTACTCCCTCCGTTC 59.318 57.143 0.00 0.00 0.00 3.95
2843 4045 1.688627 GGATCCACTACTCCCTCCGTT 60.689 57.143 6.95 0.00 0.00 4.44
2844 4046 0.106116 GGATCCACTACTCCCTCCGT 60.106 60.000 6.95 0.00 0.00 4.69
2845 4047 0.106167 TGGATCCACTACTCCCTCCG 60.106 60.000 11.44 0.00 0.00 4.63
2846 4048 1.218196 TCTGGATCCACTACTCCCTCC 59.782 57.143 11.44 0.00 0.00 4.30
2847 4049 2.757894 TCTGGATCCACTACTCCCTC 57.242 55.000 11.44 0.00 0.00 4.30
2848 4050 2.316372 ACTTCTGGATCCACTACTCCCT 59.684 50.000 11.44 0.00 0.00 4.20
2849 4051 2.753247 ACTTCTGGATCCACTACTCCC 58.247 52.381 11.44 0.00 0.00 4.30
2850 4052 4.957327 AGTTACTTCTGGATCCACTACTCC 59.043 45.833 11.44 0.00 0.00 3.85
2851 4053 7.642082 TTAGTTACTTCTGGATCCACTACTC 57.358 40.000 11.44 0.00 0.00 2.59
2852 4054 8.431910 TTTTAGTTACTTCTGGATCCACTACT 57.568 34.615 11.44 10.03 0.00 2.57
2853 4055 8.933807 GTTTTTAGTTACTTCTGGATCCACTAC 58.066 37.037 11.44 2.94 0.00 2.73
2854 4056 8.653191 TGTTTTTAGTTACTTCTGGATCCACTA 58.347 33.333 11.44 6.11 0.00 2.74
2855 4057 7.514721 TGTTTTTAGTTACTTCTGGATCCACT 58.485 34.615 11.44 7.20 0.00 4.00
2856 4058 7.739498 TGTTTTTAGTTACTTCTGGATCCAC 57.261 36.000 11.44 0.00 0.00 4.02
2857 4059 8.626526 GTTTGTTTTTAGTTACTTCTGGATCCA 58.373 33.333 15.27 15.27 0.00 3.41
2858 4060 8.847196 AGTTTGTTTTTAGTTACTTCTGGATCC 58.153 33.333 4.20 4.20 0.00 3.36
2859 4061 9.665264 CAGTTTGTTTTTAGTTACTTCTGGATC 57.335 33.333 0.00 0.00 0.00 3.36
2860 4062 8.630037 CCAGTTTGTTTTTAGTTACTTCTGGAT 58.370 33.333 0.00 0.00 39.59 3.41
2861 4063 7.612633 ACCAGTTTGTTTTTAGTTACTTCTGGA 59.387 33.333 0.00 0.00 39.59 3.86
2862 4064 7.768240 ACCAGTTTGTTTTTAGTTACTTCTGG 58.232 34.615 0.00 0.00 41.91 3.86
2863 4065 9.634163 AAACCAGTTTGTTTTTAGTTACTTCTG 57.366 29.630 0.00 0.00 34.92 3.02
2864 4066 9.634163 CAAACCAGTTTGTTTTTAGTTACTTCT 57.366 29.630 13.85 0.00 43.52 2.85
2880 4082 1.070601 GGGAAGCATGCAAACCAGTTT 59.929 47.619 21.98 1.84 0.00 2.66
2881 4083 0.681175 GGGAAGCATGCAAACCAGTT 59.319 50.000 21.98 2.69 0.00 3.16
2882 4084 0.469705 TGGGAAGCATGCAAACCAGT 60.470 50.000 21.98 0.00 0.00 4.00
2883 4085 0.037975 GTGGGAAGCATGCAAACCAG 60.038 55.000 21.98 0.00 0.00 4.00
2884 4086 1.470996 GGTGGGAAGCATGCAAACCA 61.471 55.000 21.98 20.39 0.00 3.67
2885 4087 1.293179 GGTGGGAAGCATGCAAACC 59.707 57.895 21.98 18.00 0.00 3.27
2886 4088 0.609662 ATGGTGGGAAGCATGCAAAC 59.390 50.000 21.98 10.22 0.00 2.93
2887 4089 2.228545 TATGGTGGGAAGCATGCAAA 57.771 45.000 21.98 0.00 0.00 3.68
2888 4090 2.228545 TTATGGTGGGAAGCATGCAA 57.771 45.000 21.98 0.00 0.00 4.08
2889 4091 2.033372 CATTATGGTGGGAAGCATGCA 58.967 47.619 21.98 0.00 0.00 3.96
2890 4092 2.034124 ACATTATGGTGGGAAGCATGC 58.966 47.619 10.51 10.51 0.00 4.06
2891 4093 3.448301 ACAACATTATGGTGGGAAGCATG 59.552 43.478 15.15 0.00 39.97 4.06
2892 4094 3.448301 CACAACATTATGGTGGGAAGCAT 59.552 43.478 15.15 0.00 42.20 3.79
2893 4095 2.824936 CACAACATTATGGTGGGAAGCA 59.175 45.455 15.15 0.00 42.20 3.91
2894 4096 2.417243 GCACAACATTATGGTGGGAAGC 60.417 50.000 17.61 9.74 42.20 3.86
2895 4097 2.824936 TGCACAACATTATGGTGGGAAG 59.175 45.455 17.61 3.48 42.20 3.46
2896 4098 2.881734 TGCACAACATTATGGTGGGAA 58.118 42.857 17.61 1.86 42.20 3.97
2897 4099 2.593925 TGCACAACATTATGGTGGGA 57.406 45.000 17.61 2.78 42.20 4.37
2898 4100 5.534278 TGTATATGCACAACATTATGGTGGG 59.466 40.000 15.15 11.96 42.59 4.61
2899 4101 6.631971 TGTATATGCACAACATTATGGTGG 57.368 37.500 15.15 4.92 39.97 4.61
2900 4102 9.531942 AAAATGTATATGCACAACATTATGGTG 57.468 29.630 18.30 8.90 41.67 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.