Multiple sequence alignment - TraesCS2A01G560300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G560300 chr2A 100.000 4235 0 0 1 4235 762619895 762624129 0.000000e+00 7821.0
1 TraesCS2A01G560300 chr2A 100.000 1013 0 0 4528 5540 762624422 762625434 0.000000e+00 1871.0
2 TraesCS2A01G560300 chr2A 80.374 1177 128 36 2370 3493 762152159 762151033 0.000000e+00 798.0
3 TraesCS2A01G560300 chr2A 87.535 353 41 3 3629 3981 762122213 762121864 6.680000e-109 405.0
4 TraesCS2A01G560300 chr2A 87.263 369 29 6 3825 4189 762149080 762148726 6.680000e-109 405.0
5 TraesCS2A01G560300 chr2A 83.500 400 54 6 3130 3525 762122776 762122385 4.080000e-96 363.0
6 TraesCS2A01G560300 chr2A 80.706 425 26 14 1623 2029 762154504 762154118 4.230000e-71 279.0
7 TraesCS2A01G560300 chr2A 88.398 181 12 6 1733 1912 20111201 20111029 5.620000e-50 209.0
8 TraesCS2A01G560300 chr2A 87.429 175 17 3 3658 3827 762149336 762149162 4.380000e-46 196.0
9 TraesCS2A01G560300 chr2A 96.970 33 1 0 172 204 762561067 762561099 7.750000e-04 56.5
10 TraesCS2A01G560300 chr2D 91.530 3294 183 29 979 4235 637433476 637430242 0.000000e+00 4449.0
11 TraesCS2A01G560300 chr2D 84.359 991 121 19 1937 2906 381062550 381063527 0.000000e+00 941.0
12 TraesCS2A01G560300 chr2D 85.563 755 80 17 1937 2678 637755199 637755937 0.000000e+00 763.0
13 TraesCS2A01G560300 chr2D 80.698 1031 104 52 941 1941 637751480 637752445 0.000000e+00 713.0
14 TraesCS2A01G560300 chr2D 80.310 1031 107 55 941 1941 381050601 381051565 0.000000e+00 691.0
15 TraesCS2A01G560300 chr2D 89.228 492 30 11 455 940 637434028 637433554 1.330000e-165 593.0
16 TraesCS2A01G560300 chr2D 86.469 473 50 7 1 459 637434546 637434074 1.780000e-139 507.0
17 TraesCS2A01G560300 chr2D 89.209 417 26 5 4528 4927 637430145 637429731 2.300000e-138 503.0
18 TraesCS2A01G560300 chr2D 88.525 366 27 6 3825 4189 381083960 381084311 3.970000e-116 429.0
19 TraesCS2A01G560300 chr2D 87.978 366 29 6 3825 4189 637765277 637765628 8.580000e-113 418.0
20 TraesCS2A01G560300 chr2D 92.086 278 21 1 3248 3525 381083245 381083521 1.870000e-104 390.0
21 TraesCS2A01G560300 chr2D 91.367 278 24 0 3248 3525 637764560 637764837 1.130000e-101 381.0
22 TraesCS2A01G560300 chr2D 91.367 278 22 2 3248 3525 381075750 381076025 4.050000e-101 379.0
23 TraesCS2A01G560300 chr2D 80.472 466 89 2 1 466 637444552 637444089 6.830000e-94 355.0
24 TraesCS2A01G560300 chr2D 82.831 332 43 7 5101 5424 637429722 637429397 9.080000e-73 285.0
25 TraesCS2A01G560300 chr2D 82.237 304 39 6 2951 3254 381063664 381063952 1.190000e-61 248.0
26 TraesCS2A01G560300 chr2D 86.283 226 31 0 3602 3827 637764949 637765174 4.290000e-61 246.0
27 TraesCS2A01G560300 chr2D 86.283 226 30 1 3602 3827 381083633 381083857 1.540000e-60 244.0
28 TraesCS2A01G560300 chr2D 80.147 272 26 13 4611 4858 380928370 380928103 1.590000e-40 178.0
29 TraesCS2A01G560300 chrUn 91.572 1673 97 14 2329 3965 24000458 23998794 0.000000e+00 2268.0
30 TraesCS2A01G560300 chrUn 90.476 1512 82 23 558 2058 24001985 24000525 0.000000e+00 1938.0
31 TraesCS2A01G560300 chrUn 92.473 465 34 1 1 465 24002868 24002405 0.000000e+00 664.0
32 TraesCS2A01G560300 chrUn 88.889 414 29 8 4528 4927 23998476 23998066 1.390000e-135 494.0
33 TraesCS2A01G560300 chrUn 97.345 226 6 0 4010 4235 23998797 23998572 8.710000e-103 385.0
34 TraesCS2A01G560300 chrUn 90.826 109 8 1 455 561 24002364 24002256 1.610000e-30 145.0
35 TraesCS2A01G560300 chr2B 79.846 1171 122 40 2370 3487 795275618 795276727 0.000000e+00 750.0
36 TraesCS2A01G560300 chr2B 80.236 764 84 25 1623 2354 795265460 795266188 3.830000e-141 512.0
37 TraesCS2A01G560300 chr2B 85.101 396 55 2 3130 3525 795287467 795287858 8.640000e-108 401.0
38 TraesCS2A01G560300 chr2B 87.088 364 29 5 3830 4189 795277130 795277479 4.020000e-106 396.0
39 TraesCS2A01G560300 chr2B 81.796 412 74 1 1 412 794865636 794865226 1.480000e-90 344.0
40 TraesCS2A01G560300 chr2B 84.663 326 40 4 3602 3918 795288013 795288337 3.220000e-82 316.0
41 TraesCS2A01G560300 chr2B 83.406 229 33 3 1 228 794786916 794787140 2.020000e-49 207.0
42 TraesCS2A01G560300 chr2B 86.705 173 20 1 3658 3827 795276871 795277043 7.330000e-44 189.0
43 TraesCS2A01G560300 chr2B 86.391 169 14 5 4939 5102 453265611 453265447 5.700000e-40 176.0
44 TraesCS2A01G560300 chr6D 82.479 702 71 28 1730 2420 21514554 21515214 8.050000e-158 568.0
45 TraesCS2A01G560300 chr6D 88.889 207 13 7 1730 1935 242424646 242424449 4.290000e-61 246.0
46 TraesCS2A01G560300 chr6A 82.403 699 69 30 1733 2420 47269735 47269080 1.350000e-155 560.0
47 TraesCS2A01G560300 chr7D 77.403 1009 120 53 3270 4235 590594475 590595418 8.290000e-138 501.0
48 TraesCS2A01G560300 chr7D 81.148 610 77 20 3299 3873 590443892 590443286 6.540000e-124 455.0
49 TraesCS2A01G560300 chr3B 90.260 308 21 8 1730 2036 433936720 433936421 1.450000e-105 394.0
50 TraesCS2A01G560300 chr3B 86.145 166 14 5 4941 5101 519860245 519860084 2.650000e-38 171.0
51 TraesCS2A01G560300 chr4A 87.356 174 15 4 4934 5101 101750306 101750478 5.660000e-45 193.0
52 TraesCS2A01G560300 chr4A 84.971 173 16 6 4939 5106 450788270 450788437 3.430000e-37 167.0
53 TraesCS2A01G560300 chr4D 85.632 174 15 6 4934 5102 83140414 83140582 2.050000e-39 174.0
54 TraesCS2A01G560300 chr4D 86.228 167 14 4 4941 5102 465125310 465125472 7.380000e-39 172.0
55 TraesCS2A01G560300 chr4D 84.483 174 19 4 4934 5101 363677560 363677389 1.230000e-36 165.0
56 TraesCS2A01G560300 chr5A 85.799 169 13 5 4939 5100 706676872 706677036 9.540000e-38 169.0
57 TraesCS2A01G560300 chr5A 95.000 40 2 0 5501 5540 279103049 279103088 4.630000e-06 63.9
58 TraesCS2A01G560300 chr7B 85.629 167 15 5 4940 5101 682239791 682239953 3.430000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G560300 chr2A 762619895 762625434 5539 False 4846.000000 7821 100.000000 1 5540 2 chr2A.!!$F2 5539
1 TraesCS2A01G560300 chr2A 762148726 762154504 5778 True 419.500000 798 83.943000 1623 4189 4 chr2A.!!$R3 2566
2 TraesCS2A01G560300 chr2A 762121864 762122776 912 True 384.000000 405 85.517500 3130 3981 2 chr2A.!!$R2 851
3 TraesCS2A01G560300 chr2D 637429397 637434546 5149 True 1267.400000 4449 87.853400 1 5424 5 chr2D.!!$R3 5423
4 TraesCS2A01G560300 chr2D 637751480 637755937 4457 False 738.000000 763 83.130500 941 2678 2 chr2D.!!$F5 1737
5 TraesCS2A01G560300 chr2D 381050601 381051565 964 False 691.000000 691 80.310000 941 1941 1 chr2D.!!$F1 1000
6 TraesCS2A01G560300 chr2D 381062550 381063952 1402 False 594.500000 941 83.298000 1937 3254 2 chr2D.!!$F3 1317
7 TraesCS2A01G560300 chr2D 381083245 381084311 1066 False 354.333333 429 88.964667 3248 4189 3 chr2D.!!$F4 941
8 TraesCS2A01G560300 chr2D 637764560 637765628 1068 False 348.333333 418 88.542667 3248 4189 3 chr2D.!!$F6 941
9 TraesCS2A01G560300 chrUn 23998066 24002868 4802 True 982.333333 2268 91.930167 1 4927 6 chrUn.!!$R1 4926
10 TraesCS2A01G560300 chr2B 795265460 795266188 728 False 512.000000 512 80.236000 1623 2354 1 chr2B.!!$F2 731
11 TraesCS2A01G560300 chr2B 795275618 795277479 1861 False 445.000000 750 84.546333 2370 4189 3 chr2B.!!$F3 1819
12 TraesCS2A01G560300 chr2B 795287467 795288337 870 False 358.500000 401 84.882000 3130 3918 2 chr2B.!!$F4 788
13 TraesCS2A01G560300 chr6D 21514554 21515214 660 False 568.000000 568 82.479000 1730 2420 1 chr6D.!!$F1 690
14 TraesCS2A01G560300 chr6A 47269080 47269735 655 True 560.000000 560 82.403000 1733 2420 1 chr6A.!!$R1 687
15 TraesCS2A01G560300 chr7D 590594475 590595418 943 False 501.000000 501 77.403000 3270 4235 1 chr7D.!!$F1 965
16 TraesCS2A01G560300 chr7D 590443286 590443892 606 True 455.000000 455 81.148000 3299 3873 1 chr7D.!!$R1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
968 1345 0.186386 GATCTTCCTCCTCCTCCGGA 59.814 60.0 2.93 2.93 0.00 5.14 F
2174 7137 0.032952 TGTTCAGTAGGTGTCGTGCC 59.967 55.0 0.00 0.00 0.00 5.01 F
2526 7575 0.825010 CTCAGGTGCAGTTTGCCCTT 60.825 55.0 7.93 0.00 44.23 3.95 F
3090 8262 0.577269 GACAACCGATGCTATGACGC 59.423 55.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2756 7816 0.107361 AACCACCAGGCCGTAATAGC 60.107 55.000 0.00 0.0 39.06 2.97 R
3090 8262 1.068055 GTGGGTTTGCAGCAGATCTTG 60.068 52.381 0.00 0.0 0.00 3.02 R
3918 11021 1.234821 TCAGTCATGGTGGTTTTCGC 58.765 50.000 0.00 0.0 0.00 4.70 R
5036 12185 0.104487 TGGACTACACGCGGAACAAA 59.896 50.000 12.47 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 0.996229 CGGCGTACGTGTTGTTCGTA 60.996 55.000 17.90 0.00 42.57 3.43
103 104 1.358152 AAAGGACCTCGTGGATTCCA 58.642 50.000 11.17 0.00 32.53 3.53
163 166 1.374125 CATGACCTTGCCGACGACA 60.374 57.895 0.00 0.00 0.00 4.35
221 224 2.635915 AGGATGTGTACAAGAACCGGAA 59.364 45.455 9.46 0.00 0.00 4.30
228 231 3.385433 TGTACAAGAACCGGAAGAGTCAA 59.615 43.478 9.46 0.00 0.00 3.18
254 257 1.746615 GCGTGCATGATGACCTGGT 60.747 57.895 10.93 0.00 0.00 4.00
266 269 0.602905 GACCTGGTGCACCACTACAC 60.603 60.000 34.74 18.88 42.01 2.90
277 280 2.028839 CACCACTACACCAATCACCGTA 60.029 50.000 0.00 0.00 0.00 4.02
280 283 1.274596 CTACACCAATCACCGTACGC 58.725 55.000 10.49 0.00 0.00 4.42
308 314 2.431942 GTACGAGTGGTGGGCACG 60.432 66.667 0.00 0.00 0.00 5.34
326 332 1.477295 ACGCCTTAGGAGCAAGTACTC 59.523 52.381 0.69 0.00 35.86 2.59
362 368 2.750350 CCTTGCCCTTCTCACCGT 59.250 61.111 0.00 0.00 0.00 4.83
488 553 1.879380 TCTTGTCGCATTGTTTCCCAG 59.121 47.619 0.00 0.00 0.00 4.45
541 608 3.998341 TCCCTTGTGTTATTTACTCGCAC 59.002 43.478 0.00 0.00 0.00 5.34
556 897 1.713830 GCACGGTGCTTATTCGGTC 59.286 57.895 25.08 0.00 40.96 4.79
592 933 6.257423 TCGATGCACATTGTTATGATGTTTC 58.743 36.000 0.00 0.00 35.64 2.78
846 1195 4.176752 GCGCTTCCCTCCCCGATT 62.177 66.667 0.00 0.00 0.00 3.34
851 1200 1.749334 CTTCCCTCCCCGATTCCTCG 61.749 65.000 0.00 0.00 44.62 4.63
868 1219 1.068250 CGCCGATTCTTCCTCCTCC 59.932 63.158 0.00 0.00 0.00 4.30
869 1220 1.395826 CGCCGATTCTTCCTCCTCCT 61.396 60.000 0.00 0.00 0.00 3.69
870 1221 0.391228 GCCGATTCTTCCTCCTCCTC 59.609 60.000 0.00 0.00 0.00 3.71
871 1222 1.044611 CCGATTCTTCCTCCTCCTCC 58.955 60.000 0.00 0.00 0.00 4.30
872 1223 1.412361 CCGATTCTTCCTCCTCCTCCT 60.412 57.143 0.00 0.00 0.00 3.69
873 1224 1.960689 CGATTCTTCCTCCTCCTCCTC 59.039 57.143 0.00 0.00 0.00 3.71
874 1225 2.325484 GATTCTTCCTCCTCCTCCTCC 58.675 57.143 0.00 0.00 0.00 4.30
875 1226 1.398799 TTCTTCCTCCTCCTCCTCCT 58.601 55.000 0.00 0.00 0.00 3.69
876 1227 0.930726 TCTTCCTCCTCCTCCTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
903 1254 3.956848 CCCAAATCCATCCTCTTTCCTTC 59.043 47.826 0.00 0.00 0.00 3.46
928 1279 2.288886 CCGATTATCTTCTTCCGACCCC 60.289 54.545 0.00 0.00 0.00 4.95
962 1339 2.038659 CACTCCAGATCTTCCTCCTCC 58.961 57.143 0.00 0.00 0.00 4.30
965 1342 1.219213 TCCAGATCTTCCTCCTCCTCC 59.781 57.143 0.00 0.00 0.00 4.30
967 1344 0.187361 AGATCTTCCTCCTCCTCCGG 59.813 60.000 0.00 0.00 0.00 5.14
968 1345 0.186386 GATCTTCCTCCTCCTCCGGA 59.814 60.000 2.93 2.93 0.00 5.14
970 1347 0.637195 TCTTCCTCCTCCTCCGGATT 59.363 55.000 3.57 0.00 31.43 3.01
971 1348 0.755686 CTTCCTCCTCCTCCGGATTG 59.244 60.000 3.57 0.00 31.43 2.67
973 1350 2.419198 CTCCTCCTCCGGATTGCG 59.581 66.667 3.57 0.00 31.43 4.85
974 1351 3.798954 CTCCTCCTCCGGATTGCGC 62.799 68.421 3.57 0.00 31.43 6.09
977 1354 3.798954 CTCCTCCGGATTGCGCTCC 62.799 68.421 3.57 7.38 0.00 4.70
1188 1591 2.685534 CCCGTTCCAGGCCCCATTA 61.686 63.158 0.00 0.00 0.00 1.90
1252 1667 0.179150 CGCCGTCAGAGAAGAAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
1278 1693 3.462678 GACGACCAGGAGCCTCCC 61.463 72.222 7.26 0.00 37.19 4.30
1380 1807 4.767255 AAGCCCGCTGAGAAGCCG 62.767 66.667 0.00 0.00 0.00 5.52
1399 1826 2.402572 GCGGCAAAGAAGGAGGAGC 61.403 63.158 0.00 0.00 0.00 4.70
1450 1877 3.649277 CTCCTCAACCAGACGGCGG 62.649 68.421 13.24 0.00 34.57 6.13
1494 1921 4.980805 GCCGCCGAGTCCAACACA 62.981 66.667 0.00 0.00 0.00 3.72
1510 1937 0.730834 CACAGAGACCAACGAGCGAG 60.731 60.000 0.00 0.00 0.00 5.03
1524 1951 3.479269 CGAGCCAACGCGTCTTCC 61.479 66.667 14.44 1.09 41.18 3.46
1527 1954 4.090057 GCCAACGCGTCTTCCAGC 62.090 66.667 14.44 5.75 0.00 4.85
1572 1999 3.805307 CTCTGCGACGTCGAGGCT 61.805 66.667 39.74 0.00 43.02 4.58
1603 2030 3.310860 ATCCCGTGCCTCGACAACC 62.311 63.158 0.02 0.00 42.86 3.77
1605 2032 2.432628 CCGTGCCTCGACAACCTC 60.433 66.667 0.02 0.00 42.86 3.85
1799 2240 3.890756 TGTCTTTGGTGCATGATTTCAGT 59.109 39.130 0.00 0.00 0.00 3.41
1815 2262 7.755591 TGATTTCAGTTTATCTTCAGACATGC 58.244 34.615 0.00 0.00 0.00 4.06
2030 6992 4.090090 AGGTAACACTCAGACATGCTACT 58.910 43.478 0.00 0.00 41.41 2.57
2077 7040 3.002791 TGATAAGTTCAGAGCCTTTGCG 58.997 45.455 0.00 0.00 44.33 4.85
2080 7043 2.543777 AGTTCAGAGCCTTTGCGTTA 57.456 45.000 0.00 0.00 44.33 3.18
2087 7050 4.458989 TCAGAGCCTTTGCGTTATGAAAAT 59.541 37.500 0.00 0.00 44.33 1.82
2174 7137 0.032952 TGTTCAGTAGGTGTCGTGCC 59.967 55.000 0.00 0.00 0.00 5.01
2187 7150 3.003897 GTGTCGTGCCCAAATTTCTGTAA 59.996 43.478 0.00 0.00 0.00 2.41
2233 7197 3.199727 TGGTTGCCATATGCTGTCTAAGA 59.800 43.478 0.00 0.00 42.00 2.10
2234 7198 3.561725 GGTTGCCATATGCTGTCTAAGAC 59.438 47.826 0.00 0.00 42.00 3.01
2235 7199 3.475566 TGCCATATGCTGTCTAAGACC 57.524 47.619 0.00 0.00 42.00 3.85
2236 7200 2.771372 TGCCATATGCTGTCTAAGACCA 59.229 45.455 0.00 0.00 42.00 4.02
2237 7201 3.199727 TGCCATATGCTGTCTAAGACCAA 59.800 43.478 0.00 0.00 42.00 3.67
2312 7313 7.128976 GCTCTCGATTTAGGAATTCAATTCAC 58.871 38.462 12.27 1.95 41.03 3.18
2319 7320 9.994432 GATTTAGGAATTCAATTCACTGTAGTG 57.006 33.333 12.27 5.67 46.91 2.74
2442 7481 1.700600 GCTGCGGAGTTGCTAGCTTC 61.701 60.000 17.23 10.69 36.63 3.86
2445 7484 1.519455 CGGAGTTGCTAGCTTCGGG 60.519 63.158 17.23 3.58 31.72 5.14
2496 7545 1.774639 TGTCGTTCGCACCTAAAGAC 58.225 50.000 0.00 0.00 36.34 3.01
2526 7575 0.825010 CTCAGGTGCAGTTTGCCCTT 60.825 55.000 7.93 0.00 44.23 3.95
2701 7761 1.265365 GTTCCTCTCTGTTGCTGTTGC 59.735 52.381 0.00 0.00 40.20 4.17
2756 7816 2.481952 GCTGTTGCTAGAACTGAACAGG 59.518 50.000 0.00 0.00 43.60 4.00
2792 7852 1.607148 GGTTACTTTGTGTGGTCTGCC 59.393 52.381 0.00 0.00 0.00 4.85
2859 7938 8.557029 GGGAAGGTAAATTAACTGATGATTACG 58.443 37.037 0.00 0.00 0.00 3.18
2861 7940 7.492352 AGGTAAATTAACTGATGATTACGGC 57.508 36.000 0.00 0.00 0.00 5.68
2862 7941 7.051623 AGGTAAATTAACTGATGATTACGGCA 58.948 34.615 0.00 0.00 0.00 5.69
2863 7942 7.719633 AGGTAAATTAACTGATGATTACGGCAT 59.280 33.333 0.00 0.00 0.00 4.40
2864 7943 8.349983 GGTAAATTAACTGATGATTACGGCATT 58.650 33.333 0.00 0.00 0.00 3.56
2865 7944 9.382244 GTAAATTAACTGATGATTACGGCATTC 57.618 33.333 0.00 0.00 0.00 2.67
2866 7945 7.566760 AATTAACTGATGATTACGGCATTCA 57.433 32.000 0.00 0.00 0.00 2.57
2867 7946 6.993786 TTAACTGATGATTACGGCATTCAA 57.006 33.333 0.00 0.00 0.00 2.69
2868 7947 7.566760 TTAACTGATGATTACGGCATTCAAT 57.433 32.000 0.00 0.00 0.00 2.57
2870 7949 6.064846 ACTGATGATTACGGCATTCAATTC 57.935 37.500 0.00 0.00 0.00 2.17
2875 7954 8.034215 TGATGATTACGGCATTCAATTCTTTTT 58.966 29.630 0.00 0.00 0.00 1.94
2890 7969 8.859090 TCAATTCTTTTTCATTGTGGACATACT 58.141 29.630 0.00 0.00 32.96 2.12
2891 7970 8.918658 CAATTCTTTTTCATTGTGGACATACTG 58.081 33.333 0.00 0.00 0.00 2.74
2894 7973 7.648142 TCTTTTTCATTGTGGACATACTGTTC 58.352 34.615 0.00 0.00 0.00 3.18
2906 7985 4.469657 ACATACTGTTCTTGCTCCCAAAA 58.530 39.130 0.00 0.00 0.00 2.44
2907 7986 4.278419 ACATACTGTTCTTGCTCCCAAAAC 59.722 41.667 0.00 0.00 0.00 2.43
2908 7987 3.018423 ACTGTTCTTGCTCCCAAAACT 57.982 42.857 0.00 0.00 0.00 2.66
2915 8003 3.070446 TCTTGCTCCCAAAACTTCGACTA 59.930 43.478 0.00 0.00 0.00 2.59
2923 8011 7.279313 GCTCCCAAAACTTCGACTATTGTAATA 59.721 37.037 0.00 0.00 0.00 0.98
3064 8236 2.599659 GGAGCAGCGATTTTCCAAAAG 58.400 47.619 0.00 0.00 0.00 2.27
3090 8262 0.577269 GACAACCGATGCTATGACGC 59.423 55.000 0.00 0.00 0.00 5.19
3109 8286 1.250328 CAAGATCTGCTGCAAACCCA 58.750 50.000 3.02 0.00 0.00 4.51
3115 8292 1.799258 CTGCTGCAAACCCACCACTC 61.799 60.000 3.02 0.00 0.00 3.51
3170 8351 7.397892 TGGTAAGTGTTCTCATTTTCAACAA 57.602 32.000 0.00 0.00 31.95 2.83
3534 8832 3.458189 GAGGGTAAGAACGGATCACATG 58.542 50.000 0.00 0.00 0.00 3.21
3650 10546 6.252869 GCAGAAAATTTCATCATACTGCAGTG 59.747 38.462 29.57 13.86 45.48 3.66
3678 10575 1.934589 TAATCCGTGTCATCCGCTTG 58.065 50.000 0.00 0.00 0.00 4.01
3918 11021 1.927174 CTAGAGAAAACCGACATGGCG 59.073 52.381 15.88 15.88 43.94 5.69
3919 11022 1.134694 GAGAAAACCGACATGGCGC 59.865 57.895 17.71 0.00 43.94 6.53
3959 11066 6.558009 TGATCAAATGCTGTTTAATCTGCTC 58.442 36.000 14.21 5.50 34.27 4.26
4019 11127 6.706270 TGTGGATAGAACAAGAGTTGAAGTTC 59.294 38.462 0.00 0.00 38.30 3.01
4152 11279 2.389866 GATACGCGAGGTGGAGTCGG 62.390 65.000 15.93 0.00 37.91 4.79
4552 11684 4.560128 ACGAGTGTAGCATAGCATATTGG 58.440 43.478 0.00 0.00 0.00 3.16
4738 11873 4.632538 TTCGTCGATGAGATGTGTGTAT 57.367 40.909 7.51 0.00 37.18 2.29
4794 11942 9.305925 GATGAGACATTTTTGTTTTTCAGTCTT 57.694 29.630 0.00 0.00 35.45 3.01
4796 11944 9.787532 TGAGACATTTTTGTTTTTCAGTCTTAG 57.212 29.630 0.00 0.00 35.45 2.18
4805 11953 2.169832 TTCAGTCTTAGGCAGTGCAC 57.830 50.000 18.61 9.40 0.00 4.57
4806 11954 1.047801 TCAGTCTTAGGCAGTGCACA 58.952 50.000 21.04 0.00 0.00 4.57
4811 11960 3.254166 AGTCTTAGGCAGTGCACAATTTG 59.746 43.478 21.04 9.64 0.00 2.32
4844 11993 8.667076 TTTTTACTTGTAGTAGGACTTGGAAC 57.333 34.615 0.00 0.00 31.47 3.62
4909 12058 3.696281 TGATGGCATTATTCTTGCACG 57.304 42.857 0.00 0.00 41.95 5.34
4927 12076 4.058124 GCACGACCAATCTGCATATTAGA 58.942 43.478 0.00 0.00 32.45 2.10
4928 12077 4.084328 GCACGACCAATCTGCATATTAGAC 60.084 45.833 0.00 0.00 32.45 2.59
4930 12079 6.447162 CACGACCAATCTGCATATTAGACTA 58.553 40.000 0.00 0.00 0.00 2.59
4931 12080 7.093354 CACGACCAATCTGCATATTAGACTAT 58.907 38.462 0.00 0.00 0.00 2.12
4934 12083 9.295214 CGACCAATCTGCATATTAGACTATTAG 57.705 37.037 0.00 0.00 0.00 1.73
4936 12085 9.935241 ACCAATCTGCATATTAGACTATTAGTG 57.065 33.333 0.00 0.00 0.00 2.74
4948 12097 9.969001 ATTAGACTATTAGTGATCTACTCCCTC 57.031 37.037 0.00 0.00 40.89 4.30
4949 12098 6.786122 AGACTATTAGTGATCTACTCCCTCC 58.214 44.000 0.00 0.00 40.89 4.30
4950 12099 6.333168 AGACTATTAGTGATCTACTCCCTCCA 59.667 42.308 0.00 0.00 40.89 3.86
4951 12100 7.019153 AGACTATTAGTGATCTACTCCCTCCAT 59.981 40.741 0.00 0.00 40.89 3.41
4952 12101 7.540183 ACTATTAGTGATCTACTCCCTCCATT 58.460 38.462 0.00 0.00 40.89 3.16
4953 12102 8.013667 ACTATTAGTGATCTACTCCCTCCATTT 58.986 37.037 0.00 0.00 40.89 2.32
4954 12103 6.732896 TTAGTGATCTACTCCCTCCATTTC 57.267 41.667 0.00 0.00 40.89 2.17
4955 12104 4.889780 AGTGATCTACTCCCTCCATTTCT 58.110 43.478 0.00 0.00 33.17 2.52
4956 12105 6.031964 AGTGATCTACTCCCTCCATTTCTA 57.968 41.667 0.00 0.00 33.17 2.10
4957 12106 6.444704 AGTGATCTACTCCCTCCATTTCTAA 58.555 40.000 0.00 0.00 33.17 2.10
4958 12107 6.903534 AGTGATCTACTCCCTCCATTTCTAAA 59.096 38.462 0.00 0.00 33.17 1.85
4959 12108 7.570607 AGTGATCTACTCCCTCCATTTCTAAAT 59.429 37.037 0.00 0.00 33.17 1.40
4960 12109 8.871125 GTGATCTACTCCCTCCATTTCTAAATA 58.129 37.037 0.00 0.00 0.00 1.40
4961 12110 9.621239 TGATCTACTCCCTCCATTTCTAAATAT 57.379 33.333 0.00 0.00 0.00 1.28
4965 12114 9.660180 CTACTCCCTCCATTTCTAAATATAAGC 57.340 37.037 0.00 0.00 0.00 3.09
4966 12115 7.462590 ACTCCCTCCATTTCTAAATATAAGCC 58.537 38.462 0.00 0.00 0.00 4.35
4967 12116 7.295911 ACTCCCTCCATTTCTAAATATAAGCCT 59.704 37.037 0.00 0.00 0.00 4.58
4968 12117 8.057246 TCCCTCCATTTCTAAATATAAGCCTT 57.943 34.615 0.00 0.00 0.00 4.35
4969 12118 9.177927 TCCCTCCATTTCTAAATATAAGCCTTA 57.822 33.333 0.00 0.00 0.00 2.69
4970 12119 9.981460 CCCTCCATTTCTAAATATAAGCCTTAT 57.019 33.333 2.01 2.01 0.00 1.73
4989 12138 9.429359 AGCCTTATTAGAGATTTCATCAATACG 57.571 33.333 0.00 0.00 0.00 3.06
4990 12139 8.660373 GCCTTATTAGAGATTTCATCAATACGG 58.340 37.037 0.00 0.00 0.00 4.02
4991 12140 9.929180 CCTTATTAGAGATTTCATCAATACGGA 57.071 33.333 0.00 0.00 0.00 4.69
4995 12144 9.915629 ATTAGAGATTTCATCAATACGGACTAC 57.084 33.333 0.00 0.00 0.00 2.73
4996 12145 7.348080 AGAGATTTCATCAATACGGACTACA 57.652 36.000 0.00 0.00 0.00 2.74
4997 12146 7.957002 AGAGATTTCATCAATACGGACTACAT 58.043 34.615 0.00 0.00 0.00 2.29
4998 12147 9.078990 AGAGATTTCATCAATACGGACTACATA 57.921 33.333 0.00 0.00 0.00 2.29
4999 12148 9.130312 GAGATTTCATCAATACGGACTACATAC 57.870 37.037 0.00 0.00 0.00 2.39
5000 12149 8.638873 AGATTTCATCAATACGGACTACATACA 58.361 33.333 0.00 0.00 0.00 2.29
5001 12150 8.818141 ATTTCATCAATACGGACTACATACAG 57.182 34.615 0.00 0.00 0.00 2.74
5002 12151 7.576861 TTCATCAATACGGACTACATACAGA 57.423 36.000 0.00 0.00 0.00 3.41
5003 12152 7.761038 TCATCAATACGGACTACATACAGAT 57.239 36.000 0.00 0.00 0.00 2.90
5004 12153 7.593825 TCATCAATACGGACTACATACAGATG 58.406 38.462 0.00 0.00 39.16 2.90
5006 12155 8.512138 CATCAATACGGACTACATACAGATGTA 58.488 37.037 0.00 0.00 44.77 2.29
5007 12156 8.631480 TCAATACGGACTACATACAGATGTAT 57.369 34.615 0.00 0.00 45.42 2.29
5008 12157 9.729281 TCAATACGGACTACATACAGATGTATA 57.271 33.333 5.21 0.00 45.42 1.47
5044 12193 8.795786 TTAAAGATTCACTCATTTTTGTTCCG 57.204 30.769 0.00 0.00 0.00 4.30
5045 12194 4.798574 AGATTCACTCATTTTTGTTCCGC 58.201 39.130 0.00 0.00 0.00 5.54
5046 12195 2.679355 TCACTCATTTTTGTTCCGCG 57.321 45.000 0.00 0.00 0.00 6.46
5047 12196 1.944024 TCACTCATTTTTGTTCCGCGT 59.056 42.857 4.92 0.00 0.00 6.01
5048 12197 2.043411 CACTCATTTTTGTTCCGCGTG 58.957 47.619 4.92 0.00 0.00 5.34
5049 12198 1.673920 ACTCATTTTTGTTCCGCGTGT 59.326 42.857 4.92 0.00 0.00 4.49
5050 12199 2.873472 ACTCATTTTTGTTCCGCGTGTA 59.127 40.909 4.92 0.00 0.00 2.90
5051 12200 3.059188 ACTCATTTTTGTTCCGCGTGTAG 60.059 43.478 4.92 0.00 0.00 2.74
5052 12201 2.873472 TCATTTTTGTTCCGCGTGTAGT 59.127 40.909 4.92 0.00 0.00 2.73
5053 12202 3.059461 TCATTTTTGTTCCGCGTGTAGTC 60.059 43.478 4.92 0.00 0.00 2.59
5054 12203 1.219646 TTTTGTTCCGCGTGTAGTCC 58.780 50.000 4.92 0.00 0.00 3.85
5055 12204 0.104487 TTTGTTCCGCGTGTAGTCCA 59.896 50.000 4.92 0.00 0.00 4.02
5056 12205 0.319083 TTGTTCCGCGTGTAGTCCAT 59.681 50.000 4.92 0.00 0.00 3.41
5057 12206 1.175654 TGTTCCGCGTGTAGTCCATA 58.824 50.000 4.92 0.00 0.00 2.74
5058 12207 1.545136 TGTTCCGCGTGTAGTCCATAA 59.455 47.619 4.92 0.00 0.00 1.90
5059 12208 2.166870 TGTTCCGCGTGTAGTCCATAAT 59.833 45.455 4.92 0.00 0.00 1.28
5060 12209 2.502213 TCCGCGTGTAGTCCATAATG 57.498 50.000 4.92 0.00 0.00 1.90
5061 12210 1.067974 TCCGCGTGTAGTCCATAATGG 59.932 52.381 4.92 0.00 39.43 3.16
5062 12211 1.067974 CCGCGTGTAGTCCATAATGGA 59.932 52.381 4.92 0.00 45.98 3.41
5076 12225 7.823745 TCCATAATGGAATCTCTAAAAAGGC 57.176 36.000 0.00 0.00 45.00 4.35
5077 12226 7.586349 TCCATAATGGAATCTCTAAAAAGGCT 58.414 34.615 0.00 0.00 45.00 4.58
5078 12227 8.061304 TCCATAATGGAATCTCTAAAAAGGCTT 58.939 33.333 0.00 0.00 45.00 4.35
5079 12228 9.354673 CCATAATGGAATCTCTAAAAAGGCTTA 57.645 33.333 0.00 0.00 40.96 3.09
5092 12241 9.333724 TCTAAAAAGGCTTATATTTAGGAACGG 57.666 33.333 21.19 4.97 36.48 4.44
5093 12242 9.333724 CTAAAAAGGCTTATATTTAGGAACGGA 57.666 33.333 16.77 0.00 33.69 4.69
5094 12243 7.803279 AAAAGGCTTATATTTAGGAACGGAG 57.197 36.000 0.00 0.00 0.00 4.63
5095 12244 5.485209 AGGCTTATATTTAGGAACGGAGG 57.515 43.478 0.00 0.00 0.00 4.30
5096 12245 4.286291 AGGCTTATATTTAGGAACGGAGGG 59.714 45.833 0.00 0.00 0.00 4.30
5097 12246 4.285260 GGCTTATATTTAGGAACGGAGGGA 59.715 45.833 0.00 0.00 0.00 4.20
5098 12247 5.480205 GCTTATATTTAGGAACGGAGGGAG 58.520 45.833 0.00 0.00 0.00 4.30
5099 12248 5.011840 GCTTATATTTAGGAACGGAGGGAGT 59.988 44.000 0.00 0.00 0.00 3.85
5110 12259 5.410746 GGAACGGAGGGAGTAAGTTTTAAAG 59.589 44.000 0.00 0.00 0.00 1.85
5115 12264 5.064834 GGAGGGAGTAAGTTTTAAAGCGATG 59.935 44.000 0.00 0.00 0.00 3.84
5123 12272 3.758554 AGTTTTAAAGCGATGCAGACCAT 59.241 39.130 0.00 0.00 36.70 3.55
5130 12279 2.095059 AGCGATGCAGACCATGAAAAAC 60.095 45.455 0.00 0.00 33.29 2.43
5131 12280 2.351641 GCGATGCAGACCATGAAAAACA 60.352 45.455 0.00 0.00 33.29 2.83
5132 12281 3.856638 GCGATGCAGACCATGAAAAACAA 60.857 43.478 0.00 0.00 33.29 2.83
5133 12282 3.916172 CGATGCAGACCATGAAAAACAAG 59.084 43.478 0.00 0.00 33.29 3.16
5145 12294 6.420008 CCATGAAAAACAAGAAAGAGCTTCAG 59.580 38.462 0.00 0.00 36.40 3.02
5150 12299 9.521503 GAAAAACAAGAAAGAGCTTCAGTAAAT 57.478 29.630 0.00 0.00 36.40 1.40
5158 12307 8.940952 AGAAAGAGCTTCAGTAAATGTATGAAC 58.059 33.333 0.00 0.00 36.40 3.18
5167 12316 8.492673 TCAGTAAATGTATGAACCTTGACATC 57.507 34.615 0.00 0.00 31.37 3.06
5169 12318 8.729756 CAGTAAATGTATGAACCTTGACATCAA 58.270 33.333 0.00 0.00 31.37 2.57
5176 12325 3.909662 CTTGACATCAAGCCCGGG 58.090 61.111 19.09 19.09 45.59 5.73
5177 12326 1.299648 CTTGACATCAAGCCCGGGA 59.700 57.895 29.31 2.23 45.59 5.14
5185 12334 4.798882 ACATCAAGCCCGGGAAAAATATA 58.201 39.130 29.31 0.00 0.00 0.86
5186 12335 4.583073 ACATCAAGCCCGGGAAAAATATAC 59.417 41.667 29.31 1.92 0.00 1.47
5217 12366 2.550830 AATCGCATACTCCCATGGTC 57.449 50.000 11.73 0.00 0.00 4.02
5291 12441 6.850752 TGGATGTTCACAAGATAGTCTACA 57.149 37.500 0.00 0.00 0.00 2.74
5292 12442 7.239763 TGGATGTTCACAAGATAGTCTACAA 57.760 36.000 0.00 0.00 0.00 2.41
5293 12443 7.097192 TGGATGTTCACAAGATAGTCTACAAC 58.903 38.462 0.00 0.00 0.00 3.32
5294 12444 6.535508 GGATGTTCACAAGATAGTCTACAACC 59.464 42.308 0.00 0.00 0.00 3.77
5295 12445 5.790593 TGTTCACAAGATAGTCTACAACCC 58.209 41.667 0.00 0.00 0.00 4.11
5296 12446 5.176592 GTTCACAAGATAGTCTACAACCCC 58.823 45.833 0.00 0.00 0.00 4.95
5297 12447 3.773119 TCACAAGATAGTCTACAACCCCC 59.227 47.826 0.00 0.00 0.00 5.40
5299 12449 4.019681 CACAAGATAGTCTACAACCCCCAA 60.020 45.833 0.00 0.00 0.00 4.12
5356 12512 7.721402 ACTCTAGATTACTCATAAGTGCCAAG 58.279 38.462 0.00 0.00 36.92 3.61
5357 12513 7.561722 ACTCTAGATTACTCATAAGTGCCAAGA 59.438 37.037 0.00 0.00 36.92 3.02
5370 12526 9.669353 CATAAGTGCCAAGATATAAATTGTGAC 57.331 33.333 1.09 0.00 0.00 3.67
5375 12531 9.109393 GTGCCAAGATATAAATTGTGACTCTAA 57.891 33.333 0.00 0.00 0.00 2.10
5376 12532 9.330063 TGCCAAGATATAAATTGTGACTCTAAG 57.670 33.333 0.00 0.00 0.00 2.18
5427 12584 8.929827 TTGATCATTATTGTTGCCTTTATGTG 57.070 30.769 0.00 0.00 0.00 3.21
5428 12585 8.065473 TGATCATTATTGTTGCCTTTATGTGT 57.935 30.769 0.00 0.00 0.00 3.72
5429 12586 7.975058 TGATCATTATTGTTGCCTTTATGTGTG 59.025 33.333 0.00 0.00 0.00 3.82
5430 12587 7.225784 TCATTATTGTTGCCTTTATGTGTGT 57.774 32.000 0.00 0.00 0.00 3.72
5431 12588 7.089538 TCATTATTGTTGCCTTTATGTGTGTG 58.910 34.615 0.00 0.00 0.00 3.82
5432 12589 4.935352 ATTGTTGCCTTTATGTGTGTGT 57.065 36.364 0.00 0.00 0.00 3.72
5433 12590 7.511959 TTATTGTTGCCTTTATGTGTGTGTA 57.488 32.000 0.00 0.00 0.00 2.90
5434 12591 6.588719 ATTGTTGCCTTTATGTGTGTGTAT 57.411 33.333 0.00 0.00 0.00 2.29
5435 12592 5.621197 TGTTGCCTTTATGTGTGTGTATC 57.379 39.130 0.00 0.00 0.00 2.24
5436 12593 5.066593 TGTTGCCTTTATGTGTGTGTATCA 58.933 37.500 0.00 0.00 0.00 2.15
5437 12594 5.049060 TGTTGCCTTTATGTGTGTGTATCAC 60.049 40.000 0.00 0.00 46.31 3.06
5438 12595 4.905429 TGCCTTTATGTGTGTGTATCACT 58.095 39.130 1.72 0.00 46.27 3.41
5439 12596 6.043854 TGCCTTTATGTGTGTGTATCACTA 57.956 37.500 1.72 0.00 46.27 2.74
5440 12597 6.649155 TGCCTTTATGTGTGTGTATCACTAT 58.351 36.000 1.72 0.00 46.27 2.12
5441 12598 7.787028 TGCCTTTATGTGTGTGTATCACTATA 58.213 34.615 1.72 0.00 46.27 1.31
5442 12599 7.926018 TGCCTTTATGTGTGTGTATCACTATAG 59.074 37.037 0.00 0.00 46.27 1.31
5443 12600 7.385205 GCCTTTATGTGTGTGTATCACTATAGG 59.615 40.741 4.43 0.00 46.27 2.57
5444 12601 8.421784 CCTTTATGTGTGTGTATCACTATAGGT 58.578 37.037 4.43 0.00 46.27 3.08
5445 12602 9.249457 CTTTATGTGTGTGTATCACTATAGGTG 57.751 37.037 4.43 0.66 46.27 4.00
5473 12630 3.687125 TCACTAGAACTGTGATCGACCT 58.313 45.455 0.00 0.00 39.23 3.85
5474 12631 4.840271 TCACTAGAACTGTGATCGACCTA 58.160 43.478 0.00 0.00 39.23 3.08
5475 12632 5.250982 TCACTAGAACTGTGATCGACCTAA 58.749 41.667 0.00 0.00 39.23 2.69
5476 12633 5.708697 TCACTAGAACTGTGATCGACCTAAA 59.291 40.000 0.00 0.00 39.23 1.85
5477 12634 6.208007 TCACTAGAACTGTGATCGACCTAAAA 59.792 38.462 0.00 0.00 39.23 1.52
5478 12635 6.308282 CACTAGAACTGTGATCGACCTAAAAC 59.692 42.308 0.00 0.00 37.60 2.43
5479 12636 5.209818 AGAACTGTGATCGACCTAAAACA 57.790 39.130 0.00 0.00 0.00 2.83
5480 12637 5.607477 AGAACTGTGATCGACCTAAAACAA 58.393 37.500 0.00 0.00 0.00 2.83
5481 12638 5.696724 AGAACTGTGATCGACCTAAAACAAG 59.303 40.000 0.00 0.00 0.00 3.16
5482 12639 4.315803 ACTGTGATCGACCTAAAACAAGG 58.684 43.478 0.00 0.00 42.82 3.61
5483 12640 4.039973 ACTGTGATCGACCTAAAACAAGGA 59.960 41.667 0.00 0.00 39.15 3.36
5484 12641 4.566004 TGTGATCGACCTAAAACAAGGAG 58.434 43.478 0.00 0.00 39.15 3.69
5485 12642 4.039973 TGTGATCGACCTAAAACAAGGAGT 59.960 41.667 0.00 0.00 39.15 3.85
5486 12643 4.995487 GTGATCGACCTAAAACAAGGAGTT 59.005 41.667 0.00 0.00 43.89 3.01
5487 12644 4.994852 TGATCGACCTAAAACAAGGAGTTG 59.005 41.667 0.00 0.00 41.19 3.16
5501 12658 7.316544 ACAAGGAGTTGTTGTGTACTTAAAG 57.683 36.000 0.00 0.00 45.00 1.85
5502 12659 6.183360 ACAAGGAGTTGTTGTGTACTTAAAGC 60.183 38.462 0.00 0.00 45.00 3.51
5503 12660 5.433526 AGGAGTTGTTGTGTACTTAAAGCA 58.566 37.500 0.00 0.00 0.00 3.91
5504 12661 6.062095 AGGAGTTGTTGTGTACTTAAAGCAT 58.938 36.000 0.00 0.00 0.00 3.79
5505 12662 6.204882 AGGAGTTGTTGTGTACTTAAAGCATC 59.795 38.462 0.00 0.00 0.00 3.91
5506 12663 6.313744 AGTTGTTGTGTACTTAAAGCATCC 57.686 37.500 0.00 0.00 0.00 3.51
5507 12664 5.049680 AGTTGTTGTGTACTTAAAGCATCCG 60.050 40.000 0.00 0.00 0.00 4.18
5508 12665 4.382291 TGTTGTGTACTTAAAGCATCCGT 58.618 39.130 0.00 0.00 0.00 4.69
5509 12666 5.539979 TGTTGTGTACTTAAAGCATCCGTA 58.460 37.500 0.00 0.00 0.00 4.02
5510 12667 5.636121 TGTTGTGTACTTAAAGCATCCGTAG 59.364 40.000 0.00 0.00 0.00 3.51
5511 12668 4.178540 TGTGTACTTAAAGCATCCGTAGC 58.821 43.478 0.00 0.00 0.00 3.58
5512 12669 3.554731 GTGTACTTAAAGCATCCGTAGCC 59.445 47.826 0.00 0.00 0.00 3.93
5513 12670 3.196039 TGTACTTAAAGCATCCGTAGCCA 59.804 43.478 0.00 0.00 0.00 4.75
5514 12671 3.343941 ACTTAAAGCATCCGTAGCCAA 57.656 42.857 0.00 0.00 0.00 4.52
5515 12672 3.886123 ACTTAAAGCATCCGTAGCCAAT 58.114 40.909 0.00 0.00 0.00 3.16
5516 12673 3.877508 ACTTAAAGCATCCGTAGCCAATC 59.122 43.478 0.00 0.00 0.00 2.67
5517 12674 1.680338 AAAGCATCCGTAGCCAATCC 58.320 50.000 0.00 0.00 0.00 3.01
5518 12675 0.179018 AAGCATCCGTAGCCAATCCC 60.179 55.000 0.00 0.00 0.00 3.85
5519 12676 1.056700 AGCATCCGTAGCCAATCCCT 61.057 55.000 0.00 0.00 0.00 4.20
5520 12677 0.179018 GCATCCGTAGCCAATCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
5521 12678 1.071699 GCATCCGTAGCCAATCCCTTA 59.928 52.381 0.00 0.00 0.00 2.69
5522 12679 2.486548 GCATCCGTAGCCAATCCCTTAA 60.487 50.000 0.00 0.00 0.00 1.85
5523 12680 3.815809 CATCCGTAGCCAATCCCTTAAA 58.184 45.455 0.00 0.00 0.00 1.52
5524 12681 4.204012 CATCCGTAGCCAATCCCTTAAAA 58.796 43.478 0.00 0.00 0.00 1.52
5525 12682 4.304048 TCCGTAGCCAATCCCTTAAAAA 57.696 40.909 0.00 0.00 0.00 1.94
5526 12683 4.011698 TCCGTAGCCAATCCCTTAAAAAC 58.988 43.478 0.00 0.00 0.00 2.43
5527 12684 3.129813 CCGTAGCCAATCCCTTAAAAACC 59.870 47.826 0.00 0.00 0.00 3.27
5528 12685 4.014406 CGTAGCCAATCCCTTAAAAACCT 58.986 43.478 0.00 0.00 0.00 3.50
5529 12686 4.461431 CGTAGCCAATCCCTTAAAAACCTT 59.539 41.667 0.00 0.00 0.00 3.50
5530 12687 5.047590 CGTAGCCAATCCCTTAAAAACCTTT 60.048 40.000 0.00 0.00 0.00 3.11
5531 12688 6.151480 CGTAGCCAATCCCTTAAAAACCTTTA 59.849 38.462 0.00 0.00 0.00 1.85
5532 12689 6.605471 AGCCAATCCCTTAAAAACCTTTAG 57.395 37.500 0.00 0.00 0.00 1.85
5533 12690 6.319715 AGCCAATCCCTTAAAAACCTTTAGA 58.680 36.000 0.00 0.00 0.00 2.10
5534 12691 6.437477 AGCCAATCCCTTAAAAACCTTTAGAG 59.563 38.462 0.00 0.00 0.00 2.43
5536 12693 6.951778 CCAATCCCTTAAAAACCTTTAGAGGA 59.048 38.462 6.26 0.00 46.74 3.71
5537 12694 7.122799 CCAATCCCTTAAAAACCTTTAGAGGAG 59.877 40.741 6.26 0.00 46.74 3.69
5538 12695 6.775234 TCCCTTAAAAACCTTTAGAGGAGT 57.225 37.500 6.26 0.00 46.74 3.85
5539 12696 7.876978 TCCCTTAAAAACCTTTAGAGGAGTA 57.123 36.000 6.26 0.00 46.74 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.299014 TACGCCGTCACGTCGTTTT 60.299 52.632 13.06 0.00 44.43 2.43
54 55 2.010817 GTACGCCGTCACGTCGTTT 61.011 57.895 13.06 0.00 44.43 3.60
84 85 1.003233 GTGGAATCCACGAGGTCCTTT 59.997 52.381 17.46 0.00 44.95 3.11
116 117 1.093159 CATCTTCTTCACCAGCAGGC 58.907 55.000 0.00 0.00 39.06 4.85
163 166 4.988598 CCTCACCACGGCAGCGTT 62.989 66.667 0.00 0.00 0.00 4.84
221 224 1.301716 ACGCGGCACAATTGACTCT 60.302 52.632 13.59 0.00 0.00 3.24
242 245 2.077579 TGGTGCACCAGGTCATCAT 58.922 52.632 34.74 0.00 42.01 2.45
254 257 1.544537 GGTGATTGGTGTAGTGGTGCA 60.545 52.381 0.00 0.00 0.00 4.57
266 269 1.680105 GACACGCGTACGGTGATTGG 61.680 60.000 30.55 13.56 46.04 3.16
277 280 0.318022 TCGTACATGTTGACACGCGT 60.318 50.000 5.58 5.58 32.46 6.01
280 283 1.719246 CCACTCGTACATGTTGACACG 59.281 52.381 2.30 8.23 33.22 4.49
326 332 4.101448 CCGTCCAGGGGCTCTTGG 62.101 72.222 8.85 8.85 35.97 3.61
359 365 4.180946 CGAGGAGCAGGACGACGG 62.181 72.222 0.00 0.00 0.00 4.79
362 368 3.125573 CGACGAGGAGCAGGACGA 61.126 66.667 0.00 0.00 0.00 4.20
400 406 3.369261 GGATCATAGCCTAGGACTGCATG 60.369 52.174 14.75 10.60 0.00 4.06
488 553 4.550422 GGATTTCTTCCACTTCAACTTGC 58.450 43.478 0.00 0.00 44.74 4.01
541 608 0.174845 TGAGGACCGAATAAGCACCG 59.825 55.000 0.00 0.00 0.00 4.94
556 897 7.587629 ACAATGTGCATCGATATATTTTGAGG 58.412 34.615 0.00 0.00 0.00 3.86
620 961 9.522804 GTAAAAACATCACACATCCTAAAAACA 57.477 29.630 0.00 0.00 0.00 2.83
688 1035 2.048877 CGCCCGTAGAAACCGTGT 60.049 61.111 0.00 0.00 0.00 4.49
793 1142 3.055819 GGGAAGAAAAATCCAGCCTTTCC 60.056 47.826 0.00 0.00 38.80 3.13
794 1143 3.055819 GGGGAAGAAAAATCCAGCCTTTC 60.056 47.826 0.00 0.00 38.80 2.62
840 1189 1.664965 GAATCGGCGAGGAATCGGG 60.665 63.158 17.22 0.00 0.00 5.14
841 1190 0.249489 AAGAATCGGCGAGGAATCGG 60.249 55.000 17.22 0.00 0.00 4.18
842 1191 1.132588 GAAGAATCGGCGAGGAATCG 58.867 55.000 17.22 0.00 0.00 3.34
843 1192 1.069358 AGGAAGAATCGGCGAGGAATC 59.931 52.381 17.22 11.05 0.00 2.52
844 1193 1.069358 GAGGAAGAATCGGCGAGGAAT 59.931 52.381 17.22 1.24 0.00 3.01
845 1194 0.460311 GAGGAAGAATCGGCGAGGAA 59.540 55.000 17.22 0.00 0.00 3.36
846 1195 1.392710 GGAGGAAGAATCGGCGAGGA 61.393 60.000 17.22 0.00 0.00 3.71
851 1200 0.391228 GAGGAGGAGGAAGAATCGGC 59.609 60.000 0.00 0.00 0.00 5.54
868 1219 1.915078 ATTTGGGGCACGAGGAGGAG 61.915 60.000 0.00 0.00 0.00 3.69
869 1220 1.910580 GATTTGGGGCACGAGGAGGA 61.911 60.000 0.00 0.00 0.00 3.71
870 1221 1.452108 GATTTGGGGCACGAGGAGG 60.452 63.158 0.00 0.00 0.00 4.30
871 1222 1.452108 GGATTTGGGGCACGAGGAG 60.452 63.158 0.00 0.00 0.00 3.69
872 1223 1.570857 ATGGATTTGGGGCACGAGGA 61.571 55.000 0.00 0.00 0.00 3.71
873 1224 1.076777 ATGGATTTGGGGCACGAGG 60.077 57.895 0.00 0.00 0.00 4.63
874 1225 1.103398 GGATGGATTTGGGGCACGAG 61.103 60.000 0.00 0.00 0.00 4.18
875 1226 1.077068 GGATGGATTTGGGGCACGA 60.077 57.895 0.00 0.00 0.00 4.35
876 1227 1.076777 AGGATGGATTTGGGGCACG 60.077 57.895 0.00 0.00 0.00 5.34
903 1254 1.797025 GGAAGAAGATAATCGGGCGG 58.203 55.000 0.00 0.00 0.00 6.13
934 1285 3.007831 GGAAGATCTGGAGTGGATGGATC 59.992 52.174 0.00 0.00 34.69 3.36
935 1286 2.978278 GGAAGATCTGGAGTGGATGGAT 59.022 50.000 0.00 0.00 0.00 3.41
937 1288 2.368221 GAGGAAGATCTGGAGTGGATGG 59.632 54.545 0.00 0.00 0.00 3.51
938 1289 2.368221 GGAGGAAGATCTGGAGTGGATG 59.632 54.545 0.00 0.00 0.00 3.51
973 1350 0.389166 CTCCTTATCGCATCCGGAGC 60.389 60.000 11.34 12.90 35.35 4.70
974 1351 0.389166 GCTCCTTATCGCATCCGGAG 60.389 60.000 11.34 3.17 43.18 4.63
977 1354 1.734477 CGGCTCCTTATCGCATCCG 60.734 63.158 0.00 0.00 0.00 4.18
1058 1461 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1059 1462 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1060 1463 1.087725 AGGAGGAGGAGGAGGAGGA 59.912 63.158 0.00 0.00 0.00 3.71
1061 1464 1.232792 CAGGAGGAGGAGGAGGAGG 59.767 68.421 0.00 0.00 0.00 4.30
1062 1465 1.457455 GCAGGAGGAGGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
1063 1466 1.938596 AGCAGGAGGAGGAGGAGGA 60.939 63.158 0.00 0.00 0.00 3.71
1299 1714 1.438651 TTGCTTTCTCCGTGGAATCG 58.561 50.000 0.00 0.00 0.00 3.34
1349 1767 2.202810 GCTTCTCCTCCGGCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
1380 1807 1.746991 CTCCTCCTTCTTTGCCGCC 60.747 63.158 0.00 0.00 0.00 6.13
1381 1808 2.402572 GCTCCTCCTTCTTTGCCGC 61.403 63.158 0.00 0.00 0.00 6.53
1382 1809 1.746991 GGCTCCTCCTTCTTTGCCG 60.747 63.158 0.00 0.00 0.00 5.69
1399 1826 4.078516 GTCGGGGAACACCTCGGG 62.079 72.222 8.66 0.00 46.43 5.14
1494 1921 2.569134 GCTCGCTCGTTGGTCTCT 59.431 61.111 0.00 0.00 0.00 3.10
1510 1937 4.090057 GCTGGAAGACGCGTTGGC 62.090 66.667 15.53 8.18 34.07 4.52
1546 1973 2.817396 GTCGCAGAGCTTCCAGCC 60.817 66.667 0.00 0.00 43.77 4.85
1572 1999 2.125326 CGGGATGTAGTCGGCTCCA 61.125 63.158 0.00 0.00 0.00 3.86
1603 2030 1.227497 GCTTCCTGATGGCCTCGAG 60.227 63.158 5.13 5.13 0.00 4.04
1605 2032 1.227497 GAGCTTCCTGATGGCCTCG 60.227 63.158 3.32 0.00 0.00 4.63
1713 2152 3.158648 TCCGGCCACCTTATCGGG 61.159 66.667 2.24 0.00 42.44 5.14
1799 2240 8.296713 GGTAAACAAAGCATGTCTGAAGATAAA 58.703 33.333 0.00 0.00 42.99 1.40
1815 2262 4.752101 CCTCTGTCAGTCAGGTAAACAAAG 59.248 45.833 0.00 0.00 43.76 2.77
1849 2297 4.100808 TGCTATACCATATCTGCACACACA 59.899 41.667 0.00 0.00 0.00 3.72
1850 2298 4.631131 TGCTATACCATATCTGCACACAC 58.369 43.478 0.00 0.00 0.00 3.82
1851 2299 4.953940 TGCTATACCATATCTGCACACA 57.046 40.909 0.00 0.00 0.00 3.72
1852 2300 5.702670 ACATTGCTATACCATATCTGCACAC 59.297 40.000 0.00 0.00 0.00 3.82
1853 2301 5.868454 ACATTGCTATACCATATCTGCACA 58.132 37.500 0.00 0.00 0.00 4.57
1964 5195 2.639286 GCACCACGCTTGAACTGG 59.361 61.111 0.00 0.00 37.77 4.00
2101 7064 8.978472 TGCCTAGAGTAACTTAATGTGTCTAAT 58.022 33.333 0.00 0.00 0.00 1.73
2105 7068 6.018669 GCATGCCTAGAGTAACTTAATGTGTC 60.019 42.308 6.36 0.00 0.00 3.67
2111 7074 6.326583 ACCATAGCATGCCTAGAGTAACTTAA 59.673 38.462 15.66 0.00 0.00 1.85
2219 7182 9.060347 CAATAACATTGGTCTTAGACAGCATAT 57.940 33.333 14.72 2.52 33.68 1.78
2285 7283 6.610741 ATTGAATTCCTAAATCGAGAGCAC 57.389 37.500 2.27 0.00 0.00 4.40
2292 7290 8.883731 ACTACAGTGAATTGAATTCCTAAATCG 58.116 33.333 14.73 3.35 38.50 3.34
2312 7313 6.766467 ACCTCAGTTTTAGGTTTTCACTACAG 59.234 38.462 0.00 0.00 45.26 2.74
2442 7481 4.772624 TCTCTGTCAAATAGATATCCCCCG 59.227 45.833 0.00 0.00 0.00 5.73
2445 7484 6.593382 GCACATCTCTGTCAAATAGATATCCC 59.407 42.308 0.00 0.00 31.62 3.85
2526 7575 3.627041 ATAGCAGGGATTCCTCTCTCA 57.373 47.619 2.01 0.00 42.67 3.27
2620 7676 0.606096 TCGATATGCCATGGTACCCG 59.394 55.000 14.67 13.06 0.00 5.28
2637 7693 6.631636 GCTTGTTGTAAAAGAAAGTACCTTCG 59.368 38.462 0.00 0.00 0.00 3.79
2674 7734 6.711277 ACAGCAACAGAGAGGAACAATATTA 58.289 36.000 0.00 0.00 0.00 0.98
2680 7740 2.564771 CAACAGCAACAGAGAGGAACA 58.435 47.619 0.00 0.00 0.00 3.18
2738 7798 2.772287 AGCCTGTTCAGTTCTAGCAAC 58.228 47.619 0.00 0.00 0.00 4.17
2756 7816 0.107361 AACCACCAGGCCGTAATAGC 60.107 55.000 0.00 0.00 39.06 2.97
2859 7938 6.427547 TCCACAATGAAAAAGAATTGAATGCC 59.572 34.615 2.60 0.00 37.26 4.40
2861 7940 8.367943 TGTCCACAATGAAAAAGAATTGAATG 57.632 30.769 2.60 0.00 37.26 2.67
2863 7942 9.474920 GTATGTCCACAATGAAAAAGAATTGAA 57.525 29.630 2.60 0.00 37.26 2.69
2864 7943 8.859090 AGTATGTCCACAATGAAAAAGAATTGA 58.141 29.630 2.60 0.00 37.26 2.57
2865 7944 8.918658 CAGTATGTCCACAATGAAAAAGAATTG 58.081 33.333 0.00 0.00 39.26 2.32
2890 7969 2.357637 CGAAGTTTTGGGAGCAAGAACA 59.642 45.455 0.00 0.00 0.00 3.18
2891 7970 2.616842 TCGAAGTTTTGGGAGCAAGAAC 59.383 45.455 0.00 0.00 0.00 3.01
2894 7973 2.222027 AGTCGAAGTTTTGGGAGCAAG 58.778 47.619 0.00 0.00 0.00 4.01
2906 7985 9.740239 TCGCTATTTTATTACAATAGTCGAAGT 57.260 29.630 17.16 0.00 38.42 3.01
2949 8041 5.469760 GCTGGGAAAGTGCAAAACAAAATAT 59.530 36.000 0.00 0.00 0.00 1.28
3064 8236 1.139520 GCATCGGTTGTCCATTGGC 59.860 57.895 0.00 0.00 0.00 4.52
3090 8262 1.068055 GTGGGTTTGCAGCAGATCTTG 60.068 52.381 0.00 0.00 0.00 3.02
3115 8292 5.982356 TCAGGATTATCAAACTCTCCACAG 58.018 41.667 0.00 0.00 0.00 3.66
3170 8351 6.171921 GGTCATCAGCATCAAAGATATAGCT 58.828 40.000 0.00 0.00 0.00 3.32
3234 8415 4.813027 CAATGAAACATTCCTGAAGGGTG 58.187 43.478 0.00 0.00 36.25 4.61
3650 10546 5.614668 CGGATGACACGGATTAATGTTATGC 60.615 44.000 0.00 0.00 32.18 3.14
3918 11021 1.234821 TCAGTCATGGTGGTTTTCGC 58.765 50.000 0.00 0.00 0.00 4.70
3919 11022 3.073678 TGATCAGTCATGGTGGTTTTCG 58.926 45.455 0.00 0.00 0.00 3.46
4019 11127 3.620374 AGCATCATTCAGCACTTAAGTCG 59.380 43.478 4.77 3.03 0.00 4.18
4128 11255 1.298413 CCACCTCGCGTATCGTCTG 60.298 63.158 5.77 0.00 39.67 3.51
4152 11279 1.661821 AGTGCAGCGACTTGACGAC 60.662 57.895 0.00 0.00 35.09 4.34
4531 11663 3.928992 CCCAATATGCTATGCTACACTCG 59.071 47.826 0.00 0.00 0.00 4.18
4552 11684 3.034721 TCGGCGGTAACAATATCATCC 57.965 47.619 7.21 0.00 0.00 3.51
4656 11791 1.544825 TTTGCTGAGCCTACTCGCCT 61.545 55.000 0.23 0.00 46.69 5.52
4790 11938 3.253188 TCAAATTGTGCACTGCCTAAGAC 59.747 43.478 19.41 0.00 0.00 3.01
4794 11942 3.419943 TGATCAAATTGTGCACTGCCTA 58.580 40.909 19.41 0.00 0.00 3.93
4796 11944 2.728690 TGATCAAATTGTGCACTGCC 57.271 45.000 19.41 4.10 0.00 4.85
4825 11974 7.171630 ACTATGTTCCAAGTCCTACTACAAG 57.828 40.000 0.00 0.00 0.00 3.16
4826 11975 8.654485 TTACTATGTTCCAAGTCCTACTACAA 57.346 34.615 0.00 0.00 0.00 2.41
4872 12021 7.764141 TGCCATCATACTTGTATTGCATAAT 57.236 32.000 0.00 0.00 0.00 1.28
4927 12076 6.532119 TGGAGGGAGTAGATCACTAATAGT 57.468 41.667 0.00 0.00 43.76 2.12
4928 12077 8.429237 AAATGGAGGGAGTAGATCACTAATAG 57.571 38.462 0.00 0.00 43.76 1.73
4930 12079 7.079048 AGAAATGGAGGGAGTAGATCACTAAT 58.921 38.462 0.00 0.00 43.76 1.73
4931 12080 6.444704 AGAAATGGAGGGAGTAGATCACTAA 58.555 40.000 0.00 0.00 43.76 2.24
4934 12083 6.732896 TTAGAAATGGAGGGAGTAGATCAC 57.267 41.667 0.00 0.00 0.00 3.06
4935 12084 7.937700 ATTTAGAAATGGAGGGAGTAGATCA 57.062 36.000 0.00 0.00 0.00 2.92
4939 12088 9.660180 GCTTATATTTAGAAATGGAGGGAGTAG 57.340 37.037 0.00 0.00 0.00 2.57
4940 12089 8.603304 GGCTTATATTTAGAAATGGAGGGAGTA 58.397 37.037 0.00 0.00 0.00 2.59
4941 12090 7.295911 AGGCTTATATTTAGAAATGGAGGGAGT 59.704 37.037 0.00 0.00 0.00 3.85
4942 12091 7.694093 AGGCTTATATTTAGAAATGGAGGGAG 58.306 38.462 0.00 0.00 0.00 4.30
4943 12092 7.648177 AGGCTTATATTTAGAAATGGAGGGA 57.352 36.000 0.00 0.00 0.00 4.20
4944 12093 9.981460 ATAAGGCTTATATTTAGAAATGGAGGG 57.019 33.333 17.92 0.00 0.00 4.30
4963 12112 9.429359 CGTATTGATGAAATCTCTAATAAGGCT 57.571 33.333 0.00 0.00 45.81 4.58
4964 12113 8.660373 CCGTATTGATGAAATCTCTAATAAGGC 58.340 37.037 0.00 0.00 45.81 4.35
4965 12114 9.929180 TCCGTATTGATGAAATCTCTAATAAGG 57.071 33.333 0.00 0.00 45.81 2.69
4969 12118 9.915629 GTAGTCCGTATTGATGAAATCTCTAAT 57.084 33.333 0.00 0.00 45.81 1.73
4970 12119 8.909923 TGTAGTCCGTATTGATGAAATCTCTAA 58.090 33.333 0.00 0.00 45.81 2.10
4971 12120 8.459911 TGTAGTCCGTATTGATGAAATCTCTA 57.540 34.615 0.00 0.00 45.81 2.43
4972 12121 7.348080 TGTAGTCCGTATTGATGAAATCTCT 57.652 36.000 0.00 0.00 45.81 3.10
4973 12122 9.130312 GTATGTAGTCCGTATTGATGAAATCTC 57.870 37.037 0.00 0.00 45.81 2.75
4974 12123 8.638873 TGTATGTAGTCCGTATTGATGAAATCT 58.361 33.333 0.00 0.00 45.81 2.40
4975 12124 8.812147 TGTATGTAGTCCGTATTGATGAAATC 57.188 34.615 0.00 0.00 45.83 2.17
4976 12125 8.638873 TCTGTATGTAGTCCGTATTGATGAAAT 58.361 33.333 0.00 0.00 0.00 2.17
4977 12126 8.002984 TCTGTATGTAGTCCGTATTGATGAAA 57.997 34.615 0.00 0.00 0.00 2.69
4978 12127 7.576861 TCTGTATGTAGTCCGTATTGATGAA 57.423 36.000 0.00 0.00 0.00 2.57
4979 12128 7.230712 ACATCTGTATGTAGTCCGTATTGATGA 59.769 37.037 0.00 0.00 44.66 2.92
4980 12129 7.371159 ACATCTGTATGTAGTCCGTATTGATG 58.629 38.462 0.00 0.00 44.66 3.07
4981 12130 7.526142 ACATCTGTATGTAGTCCGTATTGAT 57.474 36.000 0.00 0.00 44.66 2.57
4982 12131 6.954487 ACATCTGTATGTAGTCCGTATTGA 57.046 37.500 0.00 0.00 44.66 2.57
5018 12167 9.243637 CGGAACAAAAATGAGTGAATCTTTAAA 57.756 29.630 0.00 0.00 0.00 1.52
5019 12168 7.381139 GCGGAACAAAAATGAGTGAATCTTTAA 59.619 33.333 0.00 0.00 0.00 1.52
5020 12169 6.861055 GCGGAACAAAAATGAGTGAATCTTTA 59.139 34.615 0.00 0.00 0.00 1.85
5021 12170 5.691754 GCGGAACAAAAATGAGTGAATCTTT 59.308 36.000 0.00 0.00 0.00 2.52
5022 12171 5.222631 GCGGAACAAAAATGAGTGAATCTT 58.777 37.500 0.00 0.00 0.00 2.40
5023 12172 4.613622 CGCGGAACAAAAATGAGTGAATCT 60.614 41.667 0.00 0.00 0.00 2.40
5024 12173 3.603770 CGCGGAACAAAAATGAGTGAATC 59.396 43.478 0.00 0.00 0.00 2.52
5025 12174 3.004315 ACGCGGAACAAAAATGAGTGAAT 59.996 39.130 12.47 0.00 0.00 2.57
5026 12175 2.356382 ACGCGGAACAAAAATGAGTGAA 59.644 40.909 12.47 0.00 0.00 3.18
5027 12176 1.944024 ACGCGGAACAAAAATGAGTGA 59.056 42.857 12.47 0.00 0.00 3.41
5028 12177 2.043411 CACGCGGAACAAAAATGAGTG 58.957 47.619 12.47 0.00 0.00 3.51
5029 12178 1.673920 ACACGCGGAACAAAAATGAGT 59.326 42.857 12.47 0.00 0.00 3.41
5030 12179 2.399396 ACACGCGGAACAAAAATGAG 57.601 45.000 12.47 0.00 0.00 2.90
5031 12180 2.873472 ACTACACGCGGAACAAAAATGA 59.127 40.909 12.47 0.00 0.00 2.57
5032 12181 3.223157 GACTACACGCGGAACAAAAATG 58.777 45.455 12.47 0.00 0.00 2.32
5033 12182 2.224784 GGACTACACGCGGAACAAAAAT 59.775 45.455 12.47 0.00 0.00 1.82
5034 12183 1.598601 GGACTACACGCGGAACAAAAA 59.401 47.619 12.47 0.00 0.00 1.94
5035 12184 1.219646 GGACTACACGCGGAACAAAA 58.780 50.000 12.47 0.00 0.00 2.44
5036 12185 0.104487 TGGACTACACGCGGAACAAA 59.896 50.000 12.47 0.00 0.00 2.83
5037 12186 0.319083 ATGGACTACACGCGGAACAA 59.681 50.000 12.47 0.00 0.00 2.83
5038 12187 1.175654 TATGGACTACACGCGGAACA 58.824 50.000 12.47 0.00 0.00 3.18
5039 12188 2.282701 TTATGGACTACACGCGGAAC 57.717 50.000 12.47 0.00 0.00 3.62
5040 12189 2.482316 CCATTATGGACTACACGCGGAA 60.482 50.000 12.47 0.00 40.96 4.30
5041 12190 1.067974 CCATTATGGACTACACGCGGA 59.932 52.381 12.47 0.00 40.96 5.54
5042 12191 1.067974 TCCATTATGGACTACACGCGG 59.932 52.381 10.29 1.27 42.67 6.46
5043 12192 2.502213 TCCATTATGGACTACACGCG 57.498 50.000 10.29 3.53 42.67 6.01
5052 12201 7.586349 AGCCTTTTTAGAGATTCCATTATGGA 58.414 34.615 10.29 10.29 46.61 3.41
5053 12202 7.830099 AGCCTTTTTAGAGATTCCATTATGG 57.170 36.000 4.57 4.57 39.43 2.74
5066 12215 9.333724 CCGTTCCTAAATATAAGCCTTTTTAGA 57.666 33.333 8.15 0.00 34.90 2.10
5067 12216 9.333724 TCCGTTCCTAAATATAAGCCTTTTTAG 57.666 33.333 1.71 1.71 33.47 1.85
5068 12217 9.333724 CTCCGTTCCTAAATATAAGCCTTTTTA 57.666 33.333 0.00 0.00 0.00 1.52
5069 12218 7.284716 CCTCCGTTCCTAAATATAAGCCTTTTT 59.715 37.037 0.00 0.00 0.00 1.94
5070 12219 6.771267 CCTCCGTTCCTAAATATAAGCCTTTT 59.229 38.462 0.00 0.00 0.00 2.27
5071 12220 6.296803 CCTCCGTTCCTAAATATAAGCCTTT 58.703 40.000 0.00 0.00 0.00 3.11
5072 12221 5.221864 CCCTCCGTTCCTAAATATAAGCCTT 60.222 44.000 0.00 0.00 0.00 4.35
5073 12222 4.286291 CCCTCCGTTCCTAAATATAAGCCT 59.714 45.833 0.00 0.00 0.00 4.58
5074 12223 4.285260 TCCCTCCGTTCCTAAATATAAGCC 59.715 45.833 0.00 0.00 0.00 4.35
5075 12224 5.011840 ACTCCCTCCGTTCCTAAATATAAGC 59.988 44.000 0.00 0.00 0.00 3.09
5076 12225 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5077 12226 7.786464 ACTTACTCCCTCCGTTCCTAAATATAA 59.214 37.037 0.00 0.00 0.00 0.98
5078 12227 7.300658 ACTTACTCCCTCCGTTCCTAAATATA 58.699 38.462 0.00 0.00 0.00 0.86
5079 12228 6.141790 ACTTACTCCCTCCGTTCCTAAATAT 58.858 40.000 0.00 0.00 0.00 1.28
5080 12229 5.522641 ACTTACTCCCTCCGTTCCTAAATA 58.477 41.667 0.00 0.00 0.00 1.40
5081 12230 4.359996 ACTTACTCCCTCCGTTCCTAAAT 58.640 43.478 0.00 0.00 0.00 1.40
5082 12231 3.782992 ACTTACTCCCTCCGTTCCTAAA 58.217 45.455 0.00 0.00 0.00 1.85
5083 12232 3.463048 ACTTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
5084 12233 3.463048 AACTTACTCCCTCCGTTCCTA 57.537 47.619 0.00 0.00 0.00 2.94
5085 12234 2.322339 AACTTACTCCCTCCGTTCCT 57.678 50.000 0.00 0.00 0.00 3.36
5086 12235 3.413846 AAAACTTACTCCCTCCGTTCC 57.586 47.619 0.00 0.00 0.00 3.62
5087 12236 5.106791 GCTTTAAAACTTACTCCCTCCGTTC 60.107 44.000 0.00 0.00 0.00 3.95
5088 12237 4.758674 GCTTTAAAACTTACTCCCTCCGTT 59.241 41.667 0.00 0.00 0.00 4.44
5089 12238 4.321718 GCTTTAAAACTTACTCCCTCCGT 58.678 43.478 0.00 0.00 0.00 4.69
5090 12239 3.370061 CGCTTTAAAACTTACTCCCTCCG 59.630 47.826 0.00 0.00 0.00 4.63
5091 12240 4.572909 TCGCTTTAAAACTTACTCCCTCC 58.427 43.478 0.00 0.00 0.00 4.30
5092 12241 5.447413 GCATCGCTTTAAAACTTACTCCCTC 60.447 44.000 0.00 0.00 0.00 4.30
5093 12242 4.395231 GCATCGCTTTAAAACTTACTCCCT 59.605 41.667 0.00 0.00 0.00 4.20
5094 12243 4.155280 TGCATCGCTTTAAAACTTACTCCC 59.845 41.667 0.00 0.00 0.00 4.30
5095 12244 5.121768 TCTGCATCGCTTTAAAACTTACTCC 59.878 40.000 0.00 0.00 0.00 3.85
5096 12245 6.016111 GTCTGCATCGCTTTAAAACTTACTC 58.984 40.000 0.00 0.00 0.00 2.59
5097 12246 5.106673 GGTCTGCATCGCTTTAAAACTTACT 60.107 40.000 0.00 0.00 0.00 2.24
5098 12247 5.086727 GGTCTGCATCGCTTTAAAACTTAC 58.913 41.667 0.00 0.00 0.00 2.34
5099 12248 4.757657 TGGTCTGCATCGCTTTAAAACTTA 59.242 37.500 0.00 0.00 0.00 2.24
5110 12259 2.253603 GTTTTTCATGGTCTGCATCGC 58.746 47.619 0.00 0.00 0.00 4.58
5115 12264 5.591099 TCTTTCTTGTTTTTCATGGTCTGC 58.409 37.500 0.00 0.00 0.00 4.26
5123 12272 6.515272 ACTGAAGCTCTTTCTTGTTTTTCA 57.485 33.333 0.00 0.00 36.71 2.69
5130 12279 8.939929 TCATACATTTACTGAAGCTCTTTCTTG 58.060 33.333 0.00 0.00 36.71 3.02
5131 12280 9.507329 TTCATACATTTACTGAAGCTCTTTCTT 57.493 29.630 0.00 0.00 36.71 2.52
5132 12281 8.940952 GTTCATACATTTACTGAAGCTCTTTCT 58.059 33.333 0.00 0.00 36.71 2.52
5133 12282 8.178313 GGTTCATACATTTACTGAAGCTCTTTC 58.822 37.037 6.49 0.00 41.68 2.62
5167 12316 2.292292 CCGTATATTTTTCCCGGGCTTG 59.708 50.000 18.49 0.00 35.11 4.01
5169 12318 1.491754 ACCGTATATTTTTCCCGGGCT 59.508 47.619 18.49 0.00 42.81 5.19
5170 12319 1.605232 CACCGTATATTTTTCCCGGGC 59.395 52.381 18.49 0.00 42.81 6.13
5195 12344 3.740115 ACCATGGGAGTATGCGATTAAC 58.260 45.455 18.09 0.00 0.00 2.01
5198 12347 1.270305 CGACCATGGGAGTATGCGATT 60.270 52.381 18.09 0.00 0.00 3.34
5201 12350 1.956170 GCGACCATGGGAGTATGCG 60.956 63.158 18.09 8.69 0.00 4.73
5344 12500 9.669353 GTCACAATTTATATCTTGGCACTTATG 57.331 33.333 0.00 0.00 0.00 1.90
5349 12505 7.559590 AGAGTCACAATTTATATCTTGGCAC 57.440 36.000 0.00 0.00 0.00 5.01
5360 12516 8.147704 TGATGTCACACTTAGAGTCACAATTTA 58.852 33.333 0.00 0.00 0.00 1.40
5363 12519 6.101650 TGATGTCACACTTAGAGTCACAAT 57.898 37.500 0.00 0.00 0.00 2.71
5370 12526 5.240891 ACATGGTTGATGTCACACTTAGAG 58.759 41.667 0.00 0.00 41.91 2.43
5375 12531 4.973168 AGTTACATGGTTGATGTCACACT 58.027 39.130 0.00 0.00 41.91 3.55
5376 12532 6.795098 TTAGTTACATGGTTGATGTCACAC 57.205 37.500 0.00 0.00 41.91 3.82
5453 12610 5.562506 TTAGGTCGATCACAGTTCTAGTG 57.437 43.478 0.00 0.00 38.32 2.74
5454 12611 6.015688 TGTTTTAGGTCGATCACAGTTCTAGT 60.016 38.462 0.00 0.00 0.00 2.57
5455 12612 6.387465 TGTTTTAGGTCGATCACAGTTCTAG 58.613 40.000 0.00 0.00 0.00 2.43
5456 12613 6.335471 TGTTTTAGGTCGATCACAGTTCTA 57.665 37.500 0.00 0.00 0.00 2.10
5457 12614 5.209818 TGTTTTAGGTCGATCACAGTTCT 57.790 39.130 0.00 0.00 0.00 3.01
5458 12615 5.107065 CCTTGTTTTAGGTCGATCACAGTTC 60.107 44.000 0.00 0.00 0.00 3.01
5459 12616 4.755123 CCTTGTTTTAGGTCGATCACAGTT 59.245 41.667 0.00 0.00 0.00 3.16
5460 12617 4.039973 TCCTTGTTTTAGGTCGATCACAGT 59.960 41.667 0.00 0.00 36.63 3.55
5461 12618 4.566004 TCCTTGTTTTAGGTCGATCACAG 58.434 43.478 0.00 0.00 36.63 3.66
5462 12619 4.039973 ACTCCTTGTTTTAGGTCGATCACA 59.960 41.667 0.00 0.00 36.63 3.58
5463 12620 4.566987 ACTCCTTGTTTTAGGTCGATCAC 58.433 43.478 0.00 0.00 36.63 3.06
5464 12621 4.884668 ACTCCTTGTTTTAGGTCGATCA 57.115 40.909 0.00 0.00 36.63 2.92
5465 12622 4.995487 ACAACTCCTTGTTTTAGGTCGATC 59.005 41.667 0.00 0.00 37.31 3.69
5466 12623 4.969484 ACAACTCCTTGTTTTAGGTCGAT 58.031 39.130 0.00 0.00 37.31 3.59
5467 12624 4.411256 ACAACTCCTTGTTTTAGGTCGA 57.589 40.909 0.00 0.00 37.31 4.20
5468 12625 4.334481 ACAACAACTCCTTGTTTTAGGTCG 59.666 41.667 0.00 0.00 46.55 4.79
5469 12626 5.124936 ACACAACAACTCCTTGTTTTAGGTC 59.875 40.000 0.00 0.00 46.55 3.85
5470 12627 5.014202 ACACAACAACTCCTTGTTTTAGGT 58.986 37.500 0.00 0.00 46.55 3.08
5471 12628 5.576447 ACACAACAACTCCTTGTTTTAGG 57.424 39.130 0.00 0.00 46.55 2.69
5472 12629 7.316544 AGTACACAACAACTCCTTGTTTTAG 57.683 36.000 0.00 0.00 46.55 1.85
5473 12630 7.690952 AAGTACACAACAACTCCTTGTTTTA 57.309 32.000 0.00 0.00 46.55 1.52
5474 12631 6.584185 AAGTACACAACAACTCCTTGTTTT 57.416 33.333 0.00 0.00 46.55 2.43
5475 12632 7.690952 TTAAGTACACAACAACTCCTTGTTT 57.309 32.000 0.00 0.00 46.55 2.83
5477 12634 6.183360 GCTTTAAGTACACAACAACTCCTTGT 60.183 38.462 0.00 0.00 42.81 3.16
5478 12635 6.183360 TGCTTTAAGTACACAACAACTCCTTG 60.183 38.462 0.00 0.00 0.00 3.61
5479 12636 5.883673 TGCTTTAAGTACACAACAACTCCTT 59.116 36.000 0.00 0.00 0.00 3.36
5480 12637 5.433526 TGCTTTAAGTACACAACAACTCCT 58.566 37.500 0.00 0.00 0.00 3.69
5481 12638 5.744666 TGCTTTAAGTACACAACAACTCC 57.255 39.130 0.00 0.00 0.00 3.85
5482 12639 6.371389 GGATGCTTTAAGTACACAACAACTC 58.629 40.000 0.00 0.00 0.00 3.01
5483 12640 5.049680 CGGATGCTTTAAGTACACAACAACT 60.050 40.000 0.00 0.00 0.00 3.16
5484 12641 5.144359 CGGATGCTTTAAGTACACAACAAC 58.856 41.667 0.00 0.00 0.00 3.32
5485 12642 4.817464 ACGGATGCTTTAAGTACACAACAA 59.183 37.500 0.00 0.00 0.00 2.83
5486 12643 4.382291 ACGGATGCTTTAAGTACACAACA 58.618 39.130 0.00 0.00 0.00 3.33
5487 12644 5.445540 GCTACGGATGCTTTAAGTACACAAC 60.446 44.000 0.00 0.00 0.00 3.32
5488 12645 4.628333 GCTACGGATGCTTTAAGTACACAA 59.372 41.667 0.00 0.00 0.00 3.33
5489 12646 4.178540 GCTACGGATGCTTTAAGTACACA 58.821 43.478 0.00 0.00 0.00 3.72
5490 12647 3.554731 GGCTACGGATGCTTTAAGTACAC 59.445 47.826 0.00 0.00 0.00 2.90
5491 12648 3.196039 TGGCTACGGATGCTTTAAGTACA 59.804 43.478 0.00 0.00 0.00 2.90
5492 12649 3.788937 TGGCTACGGATGCTTTAAGTAC 58.211 45.455 0.00 0.00 0.00 2.73
5493 12650 4.475051 TTGGCTACGGATGCTTTAAGTA 57.525 40.909 0.00 0.00 0.00 2.24
5494 12651 3.343941 TTGGCTACGGATGCTTTAAGT 57.656 42.857 0.00 0.00 0.00 2.24
5495 12652 3.251004 GGATTGGCTACGGATGCTTTAAG 59.749 47.826 0.00 0.00 0.00 1.85
5496 12653 3.211045 GGATTGGCTACGGATGCTTTAA 58.789 45.455 0.00 0.00 0.00 1.52
5497 12654 2.486548 GGGATTGGCTACGGATGCTTTA 60.487 50.000 0.00 0.00 0.00 1.85
5498 12655 1.680338 GGATTGGCTACGGATGCTTT 58.320 50.000 0.00 0.00 0.00 3.51
5499 12656 0.179018 GGGATTGGCTACGGATGCTT 60.179 55.000 0.00 0.00 0.00 3.91
5500 12657 1.056700 AGGGATTGGCTACGGATGCT 61.057 55.000 0.00 0.00 0.00 3.79
5501 12658 0.179018 AAGGGATTGGCTACGGATGC 60.179 55.000 0.00 0.00 0.00 3.91
5502 12659 3.485463 TTAAGGGATTGGCTACGGATG 57.515 47.619 0.00 0.00 0.00 3.51
5503 12660 4.513406 TTTTAAGGGATTGGCTACGGAT 57.487 40.909 0.00 0.00 0.00 4.18
5504 12661 4.011698 GTTTTTAAGGGATTGGCTACGGA 58.988 43.478 0.00 0.00 0.00 4.69
5505 12662 3.129813 GGTTTTTAAGGGATTGGCTACGG 59.870 47.826 0.00 0.00 0.00 4.02
5506 12663 4.014406 AGGTTTTTAAGGGATTGGCTACG 58.986 43.478 0.00 0.00 0.00 3.51
5507 12664 5.995565 AAGGTTTTTAAGGGATTGGCTAC 57.004 39.130 0.00 0.00 0.00 3.58
5508 12665 7.471890 TCTAAAGGTTTTTAAGGGATTGGCTA 58.528 34.615 0.00 0.00 0.00 3.93
5509 12666 6.319715 TCTAAAGGTTTTTAAGGGATTGGCT 58.680 36.000 0.00 0.00 0.00 4.75
5510 12667 6.351033 CCTCTAAAGGTTTTTAAGGGATTGGC 60.351 42.308 0.00 0.00 37.94 4.52
5511 12668 6.951778 TCCTCTAAAGGTTTTTAAGGGATTGG 59.048 38.462 0.00 0.00 43.82 3.16
5512 12669 7.670140 ACTCCTCTAAAGGTTTTTAAGGGATTG 59.330 37.037 0.00 0.00 43.82 2.67
5513 12670 7.766628 ACTCCTCTAAAGGTTTTTAAGGGATT 58.233 34.615 0.00 0.00 43.82 3.01
5514 12671 7.344599 ACTCCTCTAAAGGTTTTTAAGGGAT 57.655 36.000 0.00 0.00 43.82 3.85
5515 12672 6.775234 ACTCCTCTAAAGGTTTTTAAGGGA 57.225 37.500 0.00 0.00 43.82 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.