Multiple sequence alignment - TraesCS2A01G558900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G558900 chr2A 100.000 4644 0 0 1 4644 762143891 762148534 0.000000e+00 8576.0
1 TraesCS2A01G558900 chr2A 84.655 1349 138 30 2332 3649 762089829 762091139 0.000000e+00 1280.0
2 TraesCS2A01G558900 chr2A 83.096 982 100 29 1397 2333 762088833 762089793 0.000000e+00 833.0
3 TraesCS2A01G558900 chr2A 81.127 763 126 12 2906 3655 762006950 762006193 3.090000e-166 595.0
4 TraesCS2A01G558900 chr2A 78.535 983 155 38 1380 2329 762008140 762007181 3.090000e-166 595.0
5 TraesCS2A01G558900 chr2A 83.201 631 97 4 260 888 762018557 762019180 1.870000e-158 569.0
6 TraesCS2A01G558900 chr2A 82.008 239 23 10 2649 2880 762097261 762097486 7.930000e-43 185.0
7 TraesCS2A01G558900 chr2A 75.896 307 54 10 264 551 741986068 741985763 6.270000e-29 139.0
8 TraesCS2A01G558900 chr2A 100.000 29 0 0 4125 4153 762147956 762147984 2.000000e-03 54.7
9 TraesCS2A01G558900 chr2A 100.000 29 0 0 4066 4094 762148015 762148043 2.000000e-03 54.7
10 TraesCS2A01G558900 chr2B 96.608 2860 30 6 1814 4644 795280498 795277677 0.000000e+00 4682.0
11 TraesCS2A01G558900 chr2B 98.343 905 15 0 886 1790 795281399 795280495 0.000000e+00 1589.0
12 TraesCS2A01G558900 chr2B 85.598 1347 131 25 2332 3649 795306957 795305645 0.000000e+00 1354.0
13 TraesCS2A01G558900 chr2B 91.489 846 27 18 47 891 795282256 795281455 0.000000e+00 1122.0
14 TraesCS2A01G558900 chr2B 82.177 1038 112 35 1347 2333 795308008 795306993 0.000000e+00 824.0
15 TraesCS2A01G558900 chr2B 84.301 637 98 2 256 891 795241717 795241082 5.100000e-174 621.0
16 TraesCS2A01G558900 chr2B 78.301 977 154 38 1380 2323 795440832 795441783 1.120000e-160 577.0
17 TraesCS2A01G558900 chr2B 83.043 631 98 4 260 888 795425589 795424966 8.720000e-157 564.0
18 TraesCS2A01G558900 chr2B 79.202 351 71 2 887 1236 794898765 794898416 4.640000e-60 243.0
19 TraesCS2A01G558900 chr2B 100.000 29 0 0 4066 4094 795278162 795278134 2.000000e-03 54.7
20 TraesCS2A01G558900 chr2B 100.000 29 0 0 4125 4153 795278221 795278193 2.000000e-03 54.7
21 TraesCS2A01G558900 chr2D 96.256 2591 54 8 1226 3787 381087893 381085317 0.000000e+00 4207.0
22 TraesCS2A01G558900 chr2D 96.249 2559 50 8 1264 3787 380924584 380927131 0.000000e+00 4152.0
23 TraesCS2A01G558900 chr2D 84.966 1184 121 22 2332 3487 381196314 381195160 0.000000e+00 1147.0
24 TraesCS2A01G558900 chr2D 96.804 657 21 0 235 891 381089244 381088588 0.000000e+00 1098.0
25 TraesCS2A01G558900 chr2D 96.330 654 24 0 235 888 380774354 380775007 0.000000e+00 1075.0
26 TraesCS2A01G558900 chr2D 82.776 987 117 24 1384 2333 381197320 381196350 0.000000e+00 832.0
27 TraesCS2A01G558900 chr2D 84.639 638 96 2 255 891 381295014 381294378 6.560000e-178 634.0
28 TraesCS2A01G558900 chr2D 96.581 351 12 0 886 1236 380775066 380775416 2.410000e-162 582.0
29 TraesCS2A01G558900 chr2D 95.278 360 8 4 886 1236 380938680 380939039 3.140000e-156 562.0
30 TraesCS2A01G558900 chr2D 96.463 311 11 0 235 545 380938348 380938658 8.910000e-142 514.0
31 TraesCS2A01G558900 chr2D 91.081 370 7 5 3785 4128 380927175 380927544 1.170000e-130 477.0
32 TraesCS2A01G558900 chr2D 97.802 273 6 0 964 1236 381088476 381088204 5.440000e-129 472.0
33 TraesCS2A01G558900 chr2D 87.601 371 17 9 4285 4644 637766176 637765824 2.010000e-108 403.0
34 TraesCS2A01G558900 chr2D 91.497 294 11 4 4351 4643 380928089 380928369 4.360000e-105 392.0
35 TraesCS2A01G558900 chr2D 91.353 266 7 2 3867 4117 637766462 637766198 2.660000e-92 350.0
36 TraesCS2A01G558900 chr2D 88.629 299 9 6 4348 4644 381084774 381084499 1.600000e-89 340.0
37 TraesCS2A01G558900 chr2D 90.441 272 5 3 3867 4117 381085161 381084890 5.760000e-89 339.0
38 TraesCS2A01G558900 chr2D 91.342 231 8 4 3557 3787 637766834 637766616 5.840000e-79 305.0
39 TraesCS2A01G558900 chr2D 86.719 256 8 2 1 235 381090111 381089861 1.280000e-65 261.0
40 TraesCS2A01G558900 chr2D 85.441 261 10 4 1 240 380937735 380937988 3.590000e-61 246.0
41 TraesCS2A01G558900 chr2D 76.667 390 51 24 1226 1589 381202578 381202203 3.690000e-41 180.0
42 TraesCS2A01G558900 chr2D 100.000 86 0 0 3785 3870 381085273 381085188 4.810000e-35 159.0
43 TraesCS2A01G558900 chr2D 95.349 86 1 1 3785 3870 637766571 637766489 2.920000e-27 134.0
44 TraesCS2A01G558900 chr2D 98.485 66 1 0 4285 4350 381084868 381084803 2.940000e-22 117.0
45 TraesCS2A01G558900 chr2D 79.365 189 12 10 1 166 381566040 381565856 1.770000e-19 108.0
46 TraesCS2A01G558900 chr2D 98.305 59 1 0 886 944 381088532 381088474 2.290000e-18 104.0
47 TraesCS2A01G558900 chr2D 100.000 44 0 0 4275 4318 380927961 380928004 1.070000e-11 82.4
48 TraesCS2A01G558900 chr2D 94.872 39 1 1 4312 4350 380928017 380928054 5.020000e-05 60.2
49 TraesCS2A01G558900 chr2D 100.000 29 0 0 4125 4153 380927482 380927510 2.000000e-03 54.7
50 TraesCS2A01G558900 chr2D 100.000 29 0 0 4125 4153 381084941 381084913 2.000000e-03 54.7
51 TraesCS2A01G558900 chr2D 100.000 29 0 0 4125 4153 637766249 637766221 2.000000e-03 54.7
52 TraesCS2A01G558900 chrUn 83.574 1315 139 30 1382 2650 22338835 22337552 0.000000e+00 1160.0
53 TraesCS2A01G558900 chrUn 86.785 1014 102 18 2649 3649 22336540 22335546 0.000000e+00 1101.0
54 TraesCS2A01G558900 chrUn 80.120 1001 158 26 265 1233 22369039 22370030 0.000000e+00 708.0
55 TraesCS2A01G558900 chrUn 79.365 189 12 10 1 166 22748388 22748572 1.770000e-19 108.0
56 TraesCS2A01G558900 chr6A 81.497 1470 170 49 1226 2650 18601869 18600457 0.000000e+00 1114.0
57 TraesCS2A01G558900 chr6A 85.830 988 117 10 2674 3655 18599403 18598433 0.000000e+00 1027.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G558900 chr2A 762143891 762148534 4643 False 2895.133333 8576 100.0000 1 4644 3 chr2A.!!$F4 4643
1 TraesCS2A01G558900 chr2A 762088833 762091139 2306 False 1056.500000 1280 83.8755 1397 3649 2 chr2A.!!$F3 2252
2 TraesCS2A01G558900 chr2A 762006193 762008140 1947 True 595.000000 595 79.8310 1380 3655 2 chr2A.!!$R2 2275
3 TraesCS2A01G558900 chr2A 762018557 762019180 623 False 569.000000 569 83.2010 260 888 1 chr2A.!!$F1 628
4 TraesCS2A01G558900 chr2B 795277677 795282256 4579 True 1500.480000 4682 97.2880 47 4644 5 chr2B.!!$R4 4597
5 TraesCS2A01G558900 chr2B 795305645 795308008 2363 True 1089.000000 1354 83.8875 1347 3649 2 chr2B.!!$R5 2302
6 TraesCS2A01G558900 chr2B 795241082 795241717 635 True 621.000000 621 84.3010 256 891 1 chr2B.!!$R2 635
7 TraesCS2A01G558900 chr2B 795440832 795441783 951 False 577.000000 577 78.3010 1380 2323 1 chr2B.!!$F1 943
8 TraesCS2A01G558900 chr2B 795424966 795425589 623 True 564.000000 564 83.0430 260 888 1 chr2B.!!$R3 628
9 TraesCS2A01G558900 chr2D 381195160 381197320 2160 True 989.500000 1147 83.8710 1384 3487 2 chr2D.!!$R5 2103
10 TraesCS2A01G558900 chr2D 380924584 380928369 3785 False 869.716667 4152 95.6165 1264 4643 6 chr2D.!!$F2 3379
11 TraesCS2A01G558900 chr2D 380774354 380775416 1062 False 828.500000 1075 96.4555 235 1236 2 chr2D.!!$F1 1001
12 TraesCS2A01G558900 chr2D 381084499 381090111 5612 True 715.170000 4207 95.3441 1 4644 10 chr2D.!!$R4 4643
13 TraesCS2A01G558900 chr2D 381294378 381295014 636 True 634.000000 634 84.6390 255 891 1 chr2D.!!$R2 636
14 TraesCS2A01G558900 chr2D 380937735 380939039 1304 False 440.666667 562 92.3940 1 1236 3 chr2D.!!$F3 1235
15 TraesCS2A01G558900 chr2D 637765824 637766834 1010 True 249.340000 403 93.1290 3557 4644 5 chr2D.!!$R6 1087
16 TraesCS2A01G558900 chrUn 22335546 22338835 3289 True 1130.500000 1160 85.1795 1382 3649 2 chrUn.!!$R1 2267
17 TraesCS2A01G558900 chrUn 22369039 22370030 991 False 708.000000 708 80.1200 265 1233 1 chrUn.!!$F1 968
18 TraesCS2A01G558900 chr6A 18598433 18601869 3436 True 1070.500000 1114 83.6635 1226 3655 2 chr6A.!!$R1 2429

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1689 0.740868 CGGCGACAGATGTCATTGGT 60.741 55.0 13.09 0.0 44.99 3.67 F
1521 2628 0.183492 ACAGGGCTTGTCAAGAGCAA 59.817 50.0 16.99 0.0 41.89 3.91 F
1626 2757 2.559698 TGGATTTTCTGCTGGTCGAA 57.440 45.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2602 3811 3.772853 AACAGCCTCGGCAAGTGCA 62.773 57.895 11.02 0.0 44.88 4.57 R
2868 5130 5.064198 CCGTTCGCAAACAGATCCTAATAAA 59.936 40.000 0.00 0.0 34.93 1.40 R
3677 6084 7.361201 GCTGCTACATGAGATTTGACAAACTAA 60.361 37.037 1.94 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 113 0.810426 TGAGGCAAACACGCGTAACA 60.810 50.000 13.44 0.57 0.00 2.41
165 187 9.277783 GAGATGCAGGTTTTGTATAATATGTCT 57.722 33.333 0.00 0.00 31.76 3.41
267 909 8.573885 GGGTCTGTACTTTGCTTACTTTATTTT 58.426 33.333 0.00 0.00 0.00 1.82
558 1200 5.665459 ACTCAATGGAGAAGTATGTAGTGC 58.335 41.667 3.42 0.00 44.26 4.40
584 1226 9.617975 CATTCAGTTTTCTGTTCTATTTTCCTC 57.382 33.333 0.00 0.00 46.98 3.71
629 1272 8.208718 TGTAGCACATTATGATTAGGTGTTTC 57.791 34.615 0.00 0.00 0.00 2.78
730 1373 6.064060 TGTTGAGTTTGAAGTTGATCTCCAT 58.936 36.000 0.00 0.00 0.00 3.41
906 1610 2.818921 TGGCCTTTTAAGCATGGATGT 58.181 42.857 3.32 0.00 0.00 3.06
945 1680 4.827087 CCTGCTGCGGCGACAGAT 62.827 66.667 27.18 0.00 40.25 2.90
946 1681 3.561213 CTGCTGCGGCGACAGATG 61.561 66.667 27.18 17.25 40.25 2.90
947 1682 4.377708 TGCTGCGGCGACAGATGT 62.378 61.111 27.18 0.00 40.25 3.06
948 1683 3.558411 GCTGCGGCGACAGATGTC 61.558 66.667 27.18 11.41 40.25 3.06
949 1684 2.125952 CTGCGGCGACAGATGTCA 60.126 61.111 21.28 2.82 44.99 3.58
950 1685 1.520120 CTGCGGCGACAGATGTCAT 60.520 57.895 21.28 0.00 44.99 3.06
951 1686 1.079197 TGCGGCGACAGATGTCATT 60.079 52.632 12.98 0.00 44.99 2.57
952 1687 1.349627 GCGGCGACAGATGTCATTG 59.650 57.895 12.98 2.99 44.99 2.82
953 1688 2.009108 CGGCGACAGATGTCATTGG 58.991 57.895 13.09 0.00 44.99 3.16
954 1689 0.740868 CGGCGACAGATGTCATTGGT 60.741 55.000 13.09 0.00 44.99 3.67
955 1690 1.470805 CGGCGACAGATGTCATTGGTA 60.471 52.381 13.09 0.00 44.99 3.25
956 1691 2.627945 GGCGACAGATGTCATTGGTAA 58.372 47.619 13.09 0.00 44.99 2.85
957 1692 2.609459 GGCGACAGATGTCATTGGTAAG 59.391 50.000 13.09 0.00 44.99 2.34
958 1693 3.521560 GCGACAGATGTCATTGGTAAGA 58.478 45.455 13.09 0.00 44.99 2.10
959 1694 3.307242 GCGACAGATGTCATTGGTAAGAC 59.693 47.826 13.09 0.00 44.99 3.01
960 1695 4.748892 CGACAGATGTCATTGGTAAGACT 58.251 43.478 13.09 0.00 44.99 3.24
961 1696 5.171476 CGACAGATGTCATTGGTAAGACTT 58.829 41.667 13.09 0.00 44.99 3.01
962 1697 5.062683 CGACAGATGTCATTGGTAAGACTTG 59.937 44.000 13.09 0.00 44.99 3.16
963 1698 4.697352 ACAGATGTCATTGGTAAGACTTGC 59.303 41.667 0.00 0.00 35.81 4.01
964 1699 4.696877 CAGATGTCATTGGTAAGACTTGCA 59.303 41.667 5.62 0.00 35.81 4.08
965 1700 4.940046 AGATGTCATTGGTAAGACTTGCAG 59.060 41.667 5.62 0.00 35.81 4.41
1134 1869 2.037121 TGCTCGAGAAGGTCACATCAAA 59.963 45.455 18.75 0.00 0.00 2.69
1314 2376 2.106566 TCTGATTCTGACTCTGGCTCC 58.893 52.381 2.88 0.00 0.00 4.70
1320 2382 2.757917 GACTCTGGCTCCGGCTCT 60.758 66.667 0.00 0.00 38.73 4.09
1431 2526 2.940994 TGGTTGATGTTCTTTCCGGA 57.059 45.000 0.00 0.00 0.00 5.14
1521 2628 0.183492 ACAGGGCTTGTCAAGAGCAA 59.817 50.000 16.99 0.00 41.89 3.91
1626 2757 2.559698 TGGATTTTCTGCTGGTCGAA 57.440 45.000 0.00 0.00 0.00 3.71
2424 3624 8.344446 AGTTTAAACTGAGTTGTTTGGTTACT 57.656 30.769 19.94 0.00 40.00 2.24
2553 3753 5.559417 GCACTGTTGAAAATTTTCTGCCATG 60.559 40.000 26.73 20.11 38.02 3.66
2560 3760 9.255304 GTTGAAAATTTTCTGCCATGTTTAGTA 57.745 29.630 26.73 3.61 38.02 1.82
2582 3782 5.831702 AAGCATAGAGAAAATCAGCAAGG 57.168 39.130 0.00 0.00 0.00 3.61
2602 3811 7.231519 AGCAAGGAAAGCAATTAAAGTAGTCTT 59.768 33.333 0.00 0.00 35.14 3.01
2825 5087 3.128349 GTGTAAAAGCAGAAGGTGTCGA 58.872 45.455 0.00 0.00 0.00 4.20
3677 6084 2.251600 GCTTGTTGCTGCTGCTAGT 58.748 52.632 17.00 0.00 40.48 2.57
4038 6593 3.196469 TGATTCTGTGGGTTGAGAGCTAG 59.804 47.826 0.00 0.00 0.00 3.42
4163 6718 2.846371 CCTGAGAAGAGGCGTTTGG 58.154 57.895 0.00 0.00 0.00 3.28
4164 6719 0.035458 CCTGAGAAGAGGCGTTTGGT 59.965 55.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.903682 TGCTAAACTTTGTTAGTAGTGTACTAG 57.096 33.333 0.00 0.00 41.84 2.57
292 934 4.787598 CAGCACCAAAGATAAGTGTCAAC 58.212 43.478 0.00 0.00 33.96 3.18
558 1200 9.617975 GAGGAAAATAGAACAGAAAACTGAATG 57.382 33.333 0.00 0.00 0.00 2.67
584 1226 5.413309 ACATAGTCAGGAGGAAGAAACAG 57.587 43.478 0.00 0.00 0.00 3.16
629 1272 6.206048 TCCTGCAAGCATCACATCATTATTAG 59.794 38.462 0.00 0.00 0.00 1.73
640 1283 2.798499 GCAATCATCCTGCAAGCATCAC 60.798 50.000 0.00 0.00 39.69 3.06
730 1373 1.208052 GACTCTGCTCCATTGGCTACA 59.792 52.381 0.00 0.00 0.00 2.74
906 1610 2.167693 AGACCAAGAACACACAACTCGA 59.832 45.455 0.00 0.00 0.00 4.04
944 1679 4.012374 CCTGCAAGTCTTACCAATGACAT 58.988 43.478 0.00 0.00 35.81 3.06
945 1680 3.411446 CCTGCAAGTCTTACCAATGACA 58.589 45.455 0.00 0.00 35.81 3.58
946 1681 2.162408 GCCTGCAAGTCTTACCAATGAC 59.838 50.000 0.00 0.00 0.00 3.06
947 1682 2.436417 GCCTGCAAGTCTTACCAATGA 58.564 47.619 0.00 0.00 0.00 2.57
948 1683 1.131126 CGCCTGCAAGTCTTACCAATG 59.869 52.381 0.00 0.00 0.00 2.82
949 1684 1.003118 TCGCCTGCAAGTCTTACCAAT 59.997 47.619 0.00 0.00 0.00 3.16
950 1685 0.394938 TCGCCTGCAAGTCTTACCAA 59.605 50.000 0.00 0.00 0.00 3.67
951 1686 0.037326 CTCGCCTGCAAGTCTTACCA 60.037 55.000 0.00 0.00 0.00 3.25
952 1687 0.037232 ACTCGCCTGCAAGTCTTACC 60.037 55.000 0.00 0.00 0.00 2.85
953 1688 1.461127 CAACTCGCCTGCAAGTCTTAC 59.539 52.381 0.00 0.00 0.00 2.34
954 1689 1.070134 ACAACTCGCCTGCAAGTCTTA 59.930 47.619 0.00 0.00 0.00 2.10
955 1690 0.179045 ACAACTCGCCTGCAAGTCTT 60.179 50.000 0.00 0.00 0.00 3.01
956 1691 0.882042 CACAACTCGCCTGCAAGTCT 60.882 55.000 0.00 0.00 0.00 3.24
957 1692 1.571460 CACAACTCGCCTGCAAGTC 59.429 57.895 0.00 0.00 0.00 3.01
958 1693 2.546494 GCACAACTCGCCTGCAAGT 61.546 57.895 0.00 0.00 0.00 3.16
959 1694 1.789078 AAGCACAACTCGCCTGCAAG 61.789 55.000 0.00 0.00 33.06 4.01
960 1695 1.785041 GAAGCACAACTCGCCTGCAA 61.785 55.000 0.00 0.00 33.06 4.08
961 1696 2.203195 AAGCACAACTCGCCTGCA 60.203 55.556 0.00 0.00 33.06 4.41
962 1697 1.510480 AAGAAGCACAACTCGCCTGC 61.510 55.000 0.00 0.00 0.00 4.85
963 1698 0.236711 CAAGAAGCACAACTCGCCTG 59.763 55.000 0.00 0.00 0.00 4.85
964 1699 0.106708 TCAAGAAGCACAACTCGCCT 59.893 50.000 0.00 0.00 0.00 5.52
965 1700 1.129437 GATCAAGAAGCACAACTCGCC 59.871 52.381 0.00 0.00 0.00 5.54
1320 2382 1.224315 CATCTCATGGCCGGAACCA 59.776 57.895 5.05 3.83 45.82 3.67
1418 2513 2.504367 CAAGGTGTCCGGAAAGAACAT 58.496 47.619 5.23 0.00 0.00 2.71
1431 2526 2.025887 CCTCTTAAGCATCCCAAGGTGT 60.026 50.000 0.00 0.00 0.00 4.16
1521 2628 2.711547 GGGCCCTAGGTTAGACATGATT 59.288 50.000 17.04 0.00 0.00 2.57
2424 3624 8.012957 ACACAAAACAATTCCAAGGTATGTAA 57.987 30.769 0.00 0.00 0.00 2.41
2553 3753 8.883731 TGCTGATTTTCTCTATGCTTACTAAAC 58.116 33.333 0.00 0.00 0.00 2.01
2560 3760 5.503927 TCCTTGCTGATTTTCTCTATGCTT 58.496 37.500 0.00 0.00 0.00 3.91
2582 3782 7.363431 AGTGCAAGACTACTTTAATTGCTTTC 58.637 34.615 9.33 1.64 44.99 2.62
2602 3811 3.772853 AACAGCCTCGGCAAGTGCA 62.773 57.895 11.02 0.00 44.88 4.57
2825 5087 9.492973 CACAGGTTTTGAATTTGGATTTAGAAT 57.507 29.630 0.00 0.00 0.00 2.40
2868 5130 5.064198 CCGTTCGCAAACAGATCCTAATAAA 59.936 40.000 0.00 0.00 34.93 1.40
3676 6083 7.806690 TGCTACATGAGATTTGACAAACTAAC 58.193 34.615 1.94 0.00 0.00 2.34
3677 6084 7.361201 GCTGCTACATGAGATTTGACAAACTAA 60.361 37.037 1.94 0.00 0.00 2.24
3728 6135 9.278978 TGACAACTAACTACATGCTCAAATTAA 57.721 29.630 0.00 0.00 0.00 1.40
3729 6136 8.840833 TGACAACTAACTACATGCTCAAATTA 57.159 30.769 0.00 0.00 0.00 1.40
3730 6137 7.744087 TGACAACTAACTACATGCTCAAATT 57.256 32.000 0.00 0.00 0.00 1.82
4038 6593 3.365969 CGAGGAAGCCAACCAAATTACAC 60.366 47.826 0.00 0.00 0.00 2.90
4154 6709 1.528309 CAGACCCAACCAAACGCCT 60.528 57.895 0.00 0.00 0.00 5.52
4155 6710 2.561037 CCAGACCCAACCAAACGCC 61.561 63.158 0.00 0.00 0.00 5.68
4156 6711 3.039134 CCAGACCCAACCAAACGC 58.961 61.111 0.00 0.00 0.00 4.84
4157 6712 2.561037 GGCCAGACCCAACCAAACG 61.561 63.158 0.00 0.00 0.00 3.60
4158 6713 1.152546 AGGCCAGACCCAACCAAAC 60.153 57.895 5.01 0.00 40.58 2.93
4159 6714 1.152567 CAGGCCAGACCCAACCAAA 60.153 57.895 5.01 0.00 40.58 3.28
4160 6715 2.520458 CAGGCCAGACCCAACCAA 59.480 61.111 5.01 0.00 40.58 3.67
4161 6716 3.579302 CCAGGCCAGACCCAACCA 61.579 66.667 5.01 0.00 40.58 3.67
4162 6717 3.580319 ACCAGGCCAGACCCAACC 61.580 66.667 5.01 0.00 40.58 3.77
4163 6718 2.282462 CACCAGGCCAGACCCAAC 60.282 66.667 5.01 0.00 40.58 3.77
4164 6719 3.579302 CCACCAGGCCAGACCCAA 61.579 66.667 5.01 0.00 40.58 4.12
4499 7426 1.391485 CAAAGTCGCTGATGAGGTTCG 59.609 52.381 0.00 0.00 0.00 3.95
4546 7474 9.084533 TGAGCCTAACATACATACATACATACA 57.915 33.333 0.00 0.00 0.00 2.29
4547 7475 9.923143 TTGAGCCTAACATACATACATACATAC 57.077 33.333 0.00 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.