Multiple sequence alignment - TraesCS2A01G558200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G558200 chr2A 100.000 3445 0 0 1 3445 761543684 761540240 0.000000e+00 6362.0
1 TraesCS2A01G558200 chr2A 84.977 659 95 3 1752 2408 761563823 761563167 0.000000e+00 665.0
2 TraesCS2A01G558200 chr2D 88.846 1309 72 25 1 1260 637801097 637802380 0.000000e+00 1541.0
3 TraesCS2A01G558200 chr2D 93.884 932 52 3 1701 2632 637802371 637803297 0.000000e+00 1400.0
4 TraesCS2A01G558200 chr2D 88.536 724 33 17 2727 3445 637803411 637804089 0.000000e+00 832.0
5 TraesCS2A01G558200 chr2B 94.702 755 39 1 1701 2455 796341518 796342271 0.000000e+00 1171.0
6 TraesCS2A01G558200 chr2B 84.352 671 99 5 1705 2372 796277652 796278319 0.000000e+00 652.0
7 TraesCS2A01G558200 chr2B 90.343 466 31 8 472 924 796340685 796341149 1.770000e-167 599.0
8 TraesCS2A01G558200 chr2B 90.110 455 35 1 1254 1708 118127715 118128159 1.780000e-162 582.0
9 TraesCS2A01G558200 chr2B 87.805 492 33 19 2966 3445 796343112 796343588 5.020000e-153 551.0
10 TraesCS2A01G558200 chr2B 95.640 344 11 2 920 1260 796341185 796341527 1.810000e-152 549.0
11 TraesCS2A01G558200 chr2B 85.746 456 56 7 1254 1708 18843432 18843879 1.120000e-129 473.0
12 TraesCS2A01G558200 chr2B 79.956 459 74 12 1254 1707 42601959 42601514 4.290000e-84 322.0
13 TraesCS2A01G558200 chr2B 84.746 236 35 1 1025 1260 796277424 796277658 5.750000e-58 235.0
14 TraesCS2A01G558200 chr2B 88.614 202 7 8 2454 2643 796342432 796342629 7.440000e-57 231.0
15 TraesCS2A01G558200 chr5B 98.482 461 7 0 1248 1708 576865344 576865804 0.000000e+00 813.0
16 TraesCS2A01G558200 chr4A 98.681 455 6 0 1254 1708 718820022 718820476 0.000000e+00 808.0
17 TraesCS2A01G558200 chr4A 88.769 463 35 2 1254 1708 715067655 715068108 5.020000e-153 551.0
18 TraesCS2A01G558200 chr4A 86.957 322 31 7 2941 3254 17735693 17736011 5.470000e-93 351.0
19 TraesCS2A01G558200 chr7B 97.403 462 4 1 1255 1708 657424986 657425447 0.000000e+00 780.0
20 TraesCS2A01G558200 chr3A 95.604 455 17 1 1254 1708 32543190 32542739 0.000000e+00 726.0
21 TraesCS2A01G558200 chr1D 84.100 717 99 9 1706 2409 342170507 342171221 0.000000e+00 678.0
22 TraesCS2A01G558200 chr1D 86.592 179 21 1 1023 1201 342170293 342170468 9.760000e-46 195.0
23 TraesCS2A01G558200 chrUn 81.228 847 144 10 1701 2543 249446427 249447262 0.000000e+00 669.0
24 TraesCS2A01G558200 chrUn 86.531 245 32 1 1016 1260 249446193 249446436 5.670000e-68 268.0
25 TraesCS2A01G558200 chrUn 78.893 289 46 11 922 1204 22708931 22708652 7.590000e-42 182.0
26 TraesCS2A01G558200 chr1B 83.333 738 99 16 1691 2409 458263257 458263989 0.000000e+00 660.0
27 TraesCS2A01G558200 chr1B 83.541 723 97 15 1704 2409 458081744 458082461 0.000000e+00 656.0
28 TraesCS2A01G558200 chr1B 85.339 457 58 7 1253 1708 8599724 8600172 6.730000e-127 464.0
29 TraesCS2A01G558200 chr1B 81.532 222 34 4 1039 1260 458081537 458081751 3.530000e-40 176.0
30 TraesCS2A01G558200 chr6B 92.641 462 26 1 1255 1708 22878817 22878356 0.000000e+00 658.0
31 TraesCS2A01G558200 chr1A 83.403 717 104 10 1706 2409 441842246 441842960 0.000000e+00 651.0
32 TraesCS2A01G558200 chr1A 86.592 179 21 1 1023 1201 441842032 441842207 9.760000e-46 195.0
33 TraesCS2A01G558200 chr3B 95.822 383 16 0 1326 1708 763518380 763517998 1.360000e-173 619.0
34 TraesCS2A01G558200 chr3B 81.707 82 12 3 219 300 780861970 780861892 7.980000e-07 65.8
35 TraesCS2A01G558200 chr3D 96.739 368 12 0 1253 1620 70108928 70109295 6.320000e-172 614.0
36 TraesCS2A01G558200 chr3D 100.000 29 0 0 85 113 584457812 584457784 2.000000e-03 54.7
37 TraesCS2A01G558200 chr7A 86.769 325 32 7 2941 3257 663800511 663800190 5.470000e-93 351.0
38 TraesCS2A01G558200 chr5A 84.021 194 25 2 1023 1213 597280027 597279837 7.590000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G558200 chr2A 761540240 761543684 3444 True 6362.000000 6362 100.0000 1 3445 1 chr2A.!!$R1 3444
1 TraesCS2A01G558200 chr2A 761563167 761563823 656 True 665.000000 665 84.9770 1752 2408 1 chr2A.!!$R2 656
2 TraesCS2A01G558200 chr2D 637801097 637804089 2992 False 1257.666667 1541 90.4220 1 3445 3 chr2D.!!$F1 3444
3 TraesCS2A01G558200 chr2B 796340685 796343588 2903 False 620.200000 1171 91.4208 472 3445 5 chr2B.!!$F4 2973
4 TraesCS2A01G558200 chr2B 796277424 796278319 895 False 443.500000 652 84.5490 1025 2372 2 chr2B.!!$F3 1347
5 TraesCS2A01G558200 chr1D 342170293 342171221 928 False 436.500000 678 85.3460 1023 2409 2 chr1D.!!$F1 1386
6 TraesCS2A01G558200 chrUn 249446193 249447262 1069 False 468.500000 669 83.8795 1016 2543 2 chrUn.!!$F1 1527
7 TraesCS2A01G558200 chr1B 458263257 458263989 732 False 660.000000 660 83.3330 1691 2409 1 chr1B.!!$F2 718
8 TraesCS2A01G558200 chr1B 458081537 458082461 924 False 416.000000 656 82.5365 1039 2409 2 chr1B.!!$F3 1370
9 TraesCS2A01G558200 chr1A 441842032 441842960 928 False 423.000000 651 84.9975 1023 2409 2 chr1A.!!$F1 1386

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 265 0.178938 ACCAACATGCCCACAATCCA 60.179 50.0 0.0 0.0 0.0 3.41 F
1254 1342 0.101399 GCGTGTCGTCCATCATCTCT 59.899 55.0 0.0 0.0 0.0 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1616 0.038166 GCCACCCAGATCACTTTCCA 59.962 55.0 0.00 0.0 0.00 3.53 R
2915 3857 0.605083 CTACTCAGCTGTGGAGTGCA 59.395 55.0 18.19 0.0 44.86 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 99 4.455877 GGGAACATCACTTACCACTGAAAG 59.544 45.833 0.00 0.00 42.29 2.62
152 161 0.319986 TGTGCGAGCACCGATAACAA 60.320 50.000 23.31 1.41 45.63 2.83
211 220 9.377383 CGGATTTAAATTAATAAAGCAGTACCG 57.623 33.333 1.43 1.90 33.86 4.02
217 226 2.288961 ATAAAGCAGTACCGACACCG 57.711 50.000 0.00 0.00 0.00 4.94
236 245 0.673985 GGCCAACTCAAAACTCCACC 59.326 55.000 0.00 0.00 0.00 4.61
243 252 2.291282 ACTCAAAACTCCACCACCAACA 60.291 45.455 0.00 0.00 0.00 3.33
256 265 0.178938 ACCAACATGCCCACAATCCA 60.179 50.000 0.00 0.00 0.00 3.41
302 311 9.669065 TTCGAAGACGCCTTTGAGAAGGATAAT 62.669 40.741 9.29 0.00 46.85 1.28
345 354 1.361668 CGTCATCGCCCCTTGTCAAG 61.362 60.000 5.53 5.53 0.00 3.02
359 368 5.023551 CTTGTCAAGGACTTAAGCTTTCG 57.976 43.478 3.20 0.00 33.15 3.46
364 373 1.073284 AGGACTTAAGCTTTCGCCCAA 59.927 47.619 3.20 0.00 36.60 4.12
367 376 1.886542 ACTTAAGCTTTCGCCCAAAGG 59.113 47.619 3.20 0.00 41.84 3.11
382 391 1.655114 AAAGGGACCCACAACAGCCT 61.655 55.000 14.60 0.00 0.00 4.58
573 582 7.390996 CCCATGTGTATACACTAGTAGGAGTAG 59.609 44.444 30.69 12.21 46.55 2.57
622 632 9.449719 CAGTATAACTTTTAGGAACAGGACAAT 57.550 33.333 0.00 0.00 0.00 2.71
703 713 4.392754 TCGTCACATGGTTCAATGAAGATG 59.607 41.667 11.39 11.39 0.00 2.90
797 830 9.270576 CATTTCAACAATTTATGAGAGAAGACG 57.729 33.333 0.00 0.00 0.00 4.18
817 850 2.688507 GTGTCACATGGTCCTGTAGTG 58.311 52.381 0.00 0.00 0.00 2.74
843 881 3.643237 AGATGATAAGGGGAACTCGTGA 58.357 45.455 0.00 0.00 0.00 4.35
846 884 2.232941 TGATAAGGGGAACTCGTGACAC 59.767 50.000 0.00 0.00 0.00 3.67
875 913 1.956170 CAACCAACGAGCAGCGAGT 60.956 57.895 5.99 0.00 44.57 4.18
876 914 1.956170 AACCAACGAGCAGCGAGTG 60.956 57.895 5.99 3.82 44.57 3.51
877 915 2.049156 CCAACGAGCAGCGAGTGA 60.049 61.111 5.99 0.00 44.57 3.41
882 920 1.585002 CGAGCAGCGAGTGAGTAGC 60.585 63.158 0.00 0.00 44.57 3.58
883 921 1.508545 GAGCAGCGAGTGAGTAGCA 59.491 57.895 0.00 0.00 0.00 3.49
963 1048 1.347378 TGGCGCCATAATCTATCAGCA 59.653 47.619 29.03 0.00 0.00 4.41
965 1050 2.005451 GCGCCATAATCTATCAGCAGG 58.995 52.381 0.00 0.00 0.00 4.85
966 1051 2.005451 CGCCATAATCTATCAGCAGGC 58.995 52.381 0.00 0.00 37.54 4.85
1251 1339 3.706140 GGCGTGTCGTCCATCATC 58.294 61.111 0.00 0.00 0.00 2.92
1252 1340 1.141881 GGCGTGTCGTCCATCATCT 59.858 57.895 0.00 0.00 0.00 2.90
1253 1341 0.872021 GGCGTGTCGTCCATCATCTC 60.872 60.000 0.00 0.00 0.00 2.75
1254 1342 0.101399 GCGTGTCGTCCATCATCTCT 59.899 55.000 0.00 0.00 0.00 3.10
1255 1343 1.862008 GCGTGTCGTCCATCATCTCTC 60.862 57.143 0.00 0.00 0.00 3.20
1256 1344 1.401905 CGTGTCGTCCATCATCTCTCA 59.598 52.381 0.00 0.00 0.00 3.27
1257 1345 2.540565 CGTGTCGTCCATCATCTCTCAG 60.541 54.545 0.00 0.00 0.00 3.35
1258 1346 2.027385 TGTCGTCCATCATCTCTCAGG 58.973 52.381 0.00 0.00 0.00 3.86
1259 1347 1.339610 GTCGTCCATCATCTCTCAGGG 59.660 57.143 0.00 0.00 0.00 4.45
1260 1348 1.063642 TCGTCCATCATCTCTCAGGGT 60.064 52.381 0.00 0.00 0.00 4.34
1261 1349 1.068281 CGTCCATCATCTCTCAGGGTG 59.932 57.143 0.00 0.00 0.00 4.61
1262 1350 1.415659 GTCCATCATCTCTCAGGGTGG 59.584 57.143 0.00 0.00 0.00 4.61
1263 1351 1.291939 TCCATCATCTCTCAGGGTGGA 59.708 52.381 0.00 0.00 32.26 4.02
1264 1352 1.415659 CCATCATCTCTCAGGGTGGAC 59.584 57.143 0.00 0.00 0.00 4.02
1265 1353 2.113807 CATCATCTCTCAGGGTGGACA 58.886 52.381 0.00 0.00 0.00 4.02
1266 1354 1.561643 TCATCTCTCAGGGTGGACAC 58.438 55.000 0.00 0.00 0.00 3.67
1267 1355 0.174389 CATCTCTCAGGGTGGACACG 59.826 60.000 0.00 0.00 0.00 4.49
1268 1356 0.972983 ATCTCTCAGGGTGGACACGG 60.973 60.000 0.00 0.00 0.00 4.94
1269 1357 1.908793 CTCTCAGGGTGGACACGGT 60.909 63.158 0.00 0.00 0.00 4.83
1270 1358 1.878656 CTCTCAGGGTGGACACGGTC 61.879 65.000 0.00 0.00 0.00 4.79
1299 1387 4.083862 GGTCCCTGACCGAGCCAC 62.084 72.222 0.00 0.00 43.14 5.01
1300 1388 4.083862 GTCCCTGACCGAGCCACC 62.084 72.222 0.00 0.00 0.00 4.61
1303 1391 4.003788 CCTGACCGAGCCACCGTT 62.004 66.667 0.00 0.00 0.00 4.44
1304 1392 2.030562 CTGACCGAGCCACCGTTT 59.969 61.111 0.00 0.00 0.00 3.60
1305 1393 2.280524 TGACCGAGCCACCGTTTG 60.281 61.111 0.00 0.00 0.00 2.93
1362 1450 4.699522 GCCTCGCGGTCCTGGTTT 62.700 66.667 6.13 0.00 0.00 3.27
1363 1451 2.434359 CCTCGCGGTCCTGGTTTC 60.434 66.667 6.13 0.00 0.00 2.78
1364 1452 2.342279 CTCGCGGTCCTGGTTTCA 59.658 61.111 6.13 0.00 0.00 2.69
1365 1453 1.301401 CTCGCGGTCCTGGTTTCAA 60.301 57.895 6.13 0.00 0.00 2.69
1366 1454 1.291877 CTCGCGGTCCTGGTTTCAAG 61.292 60.000 6.13 0.00 0.00 3.02
1367 1455 2.325082 CGCGGTCCTGGTTTCAAGG 61.325 63.158 0.00 0.00 0.00 3.61
1368 1456 1.072505 GCGGTCCTGGTTTCAAGGA 59.927 57.895 0.00 0.00 0.00 3.36
1371 1459 2.928416 GTCCTGGTTTCAAGGACCG 58.072 57.895 11.18 0.00 44.56 4.79
1372 1460 0.605589 GTCCTGGTTTCAAGGACCGG 60.606 60.000 11.18 0.00 44.56 5.28
1373 1461 0.765135 TCCTGGTTTCAAGGACCGGA 60.765 55.000 9.46 3.76 44.70 5.14
1374 1462 0.605589 CCTGGTTTCAAGGACCGGAC 60.606 60.000 9.46 0.00 44.70 4.79
1375 1463 0.605589 CTGGTTTCAAGGACCGGACC 60.606 60.000 15.76 15.76 44.70 4.46
1376 1464 1.670083 GGTTTCAAGGACCGGACCG 60.670 63.158 17.44 6.99 34.73 4.79
1422 1510 3.697747 CGGACCGGCCAACCACTA 61.698 66.667 5.81 0.00 35.94 2.74
1423 1511 2.046604 GGACCGGCCAACCACTAC 60.047 66.667 0.00 0.00 36.34 2.73
1424 1512 2.046604 GACCGGCCAACCACTACC 60.047 66.667 0.00 0.00 34.57 3.18
1425 1513 2.850130 ACCGGCCAACCACTACCA 60.850 61.111 0.00 0.00 34.57 3.25
1426 1514 2.046314 CCGGCCAACCACTACCAG 60.046 66.667 2.24 0.00 34.57 4.00
1427 1515 2.746277 CGGCCAACCACTACCAGC 60.746 66.667 2.24 0.00 34.57 4.85
1428 1516 2.746277 GGCCAACCACTACCAGCG 60.746 66.667 0.00 0.00 35.26 5.18
1429 1517 2.345991 GCCAACCACTACCAGCGA 59.654 61.111 0.00 0.00 0.00 4.93
1430 1518 2.033194 GCCAACCACTACCAGCGAC 61.033 63.158 0.00 0.00 0.00 5.19
1431 1519 1.736645 CCAACCACTACCAGCGACG 60.737 63.158 0.00 0.00 0.00 5.12
1432 1520 1.287815 CAACCACTACCAGCGACGA 59.712 57.895 0.00 0.00 0.00 4.20
1433 1521 1.007336 CAACCACTACCAGCGACGAC 61.007 60.000 0.00 0.00 0.00 4.34
1434 1522 2.202440 CCACTACCAGCGACGACG 60.202 66.667 2.12 2.12 42.93 5.12
1435 1523 2.559840 CACTACCAGCGACGACGT 59.440 61.111 9.33 0.00 41.98 4.34
1436 1524 1.796355 CACTACCAGCGACGACGTG 60.796 63.158 4.58 6.08 41.98 4.49
1437 1525 2.874780 CTACCAGCGACGACGTGC 60.875 66.667 4.58 9.80 41.98 5.34
1438 1526 3.604494 CTACCAGCGACGACGTGCA 62.604 63.158 19.52 0.00 41.98 4.57
1439 1527 3.884581 TACCAGCGACGACGTGCAC 62.885 63.158 19.52 6.82 41.98 4.57
1462 1550 4.641645 CGCTGGCAAGGTGGGTGA 62.642 66.667 0.00 0.00 0.00 4.02
1463 1551 2.985847 GCTGGCAAGGTGGGTGAC 60.986 66.667 0.00 0.00 0.00 3.67
1464 1552 2.669569 CTGGCAAGGTGGGTGACG 60.670 66.667 0.00 0.00 0.00 4.35
1465 1553 3.476031 CTGGCAAGGTGGGTGACGT 62.476 63.158 0.00 0.00 0.00 4.34
1466 1554 2.978010 GGCAAGGTGGGTGACGTG 60.978 66.667 0.00 0.00 0.00 4.49
1467 1555 3.660111 GCAAGGTGGGTGACGTGC 61.660 66.667 0.00 0.00 0.00 5.34
1468 1556 3.345808 CAAGGTGGGTGACGTGCG 61.346 66.667 0.00 0.00 0.00 5.34
1485 1573 4.664677 GCACGACTGTGGCGAGGT 62.665 66.667 0.00 0.00 46.51 3.85
1486 1574 2.734723 CACGACTGTGGCGAGGTG 60.735 66.667 0.00 0.00 42.59 4.00
1487 1575 3.991051 ACGACTGTGGCGAGGTGG 61.991 66.667 0.00 0.00 0.00 4.61
1488 1576 4.742201 CGACTGTGGCGAGGTGGG 62.742 72.222 0.00 0.00 0.00 4.61
1514 1602 4.918129 GATAGCGCGGGCGTCGAA 62.918 66.667 19.46 3.99 46.35 3.71
1515 1603 4.925576 ATAGCGCGGGCGTCGAAG 62.926 66.667 19.46 0.00 46.35 3.79
1533 1621 4.954933 GGCGACCTGCTATGGAAA 57.045 55.556 0.00 0.00 45.43 3.13
1534 1622 2.695314 GGCGACCTGCTATGGAAAG 58.305 57.895 0.00 0.00 45.43 2.62
1535 1623 0.107654 GGCGACCTGCTATGGAAAGT 60.108 55.000 0.00 0.00 45.43 2.66
1536 1624 1.009829 GCGACCTGCTATGGAAAGTG 58.990 55.000 0.00 0.00 41.73 3.16
1537 1625 1.405526 GCGACCTGCTATGGAAAGTGA 60.406 52.381 0.00 0.00 41.73 3.41
1538 1626 2.743183 GCGACCTGCTATGGAAAGTGAT 60.743 50.000 0.00 0.00 41.73 3.06
1539 1627 3.126831 CGACCTGCTATGGAAAGTGATC 58.873 50.000 0.00 0.00 0.00 2.92
1540 1628 3.181471 CGACCTGCTATGGAAAGTGATCT 60.181 47.826 0.00 0.00 0.00 2.75
1541 1629 4.125703 GACCTGCTATGGAAAGTGATCTG 58.874 47.826 0.00 0.00 0.00 2.90
1542 1630 3.118112 ACCTGCTATGGAAAGTGATCTGG 60.118 47.826 0.00 0.00 0.00 3.86
1543 1631 3.474600 CTGCTATGGAAAGTGATCTGGG 58.525 50.000 0.00 0.00 0.00 4.45
1544 1632 2.846206 TGCTATGGAAAGTGATCTGGGT 59.154 45.455 0.00 0.00 0.00 4.51
1545 1633 3.209410 GCTATGGAAAGTGATCTGGGTG 58.791 50.000 0.00 0.00 0.00 4.61
1546 1634 2.814805 ATGGAAAGTGATCTGGGTGG 57.185 50.000 0.00 0.00 0.00 4.61
1547 1635 0.038166 TGGAAAGTGATCTGGGTGGC 59.962 55.000 0.00 0.00 0.00 5.01
1548 1636 1.026718 GGAAAGTGATCTGGGTGGCG 61.027 60.000 0.00 0.00 0.00 5.69
1549 1637 1.648467 GAAAGTGATCTGGGTGGCGC 61.648 60.000 0.00 0.00 0.00 6.53
1550 1638 3.958147 AAGTGATCTGGGTGGCGCG 62.958 63.158 0.00 0.00 0.00 6.86
1574 1662 6.442513 GCTGTTAGCCATTATTTTCTCTGT 57.557 37.500 0.00 0.00 34.48 3.41
1575 1663 7.553881 GCTGTTAGCCATTATTTTCTCTGTA 57.446 36.000 0.00 0.00 34.48 2.74
1576 1664 7.410485 GCTGTTAGCCATTATTTTCTCTGTAC 58.590 38.462 0.00 0.00 34.48 2.90
1577 1665 7.467403 GCTGTTAGCCATTATTTTCTCTGTACC 60.467 40.741 0.00 0.00 34.48 3.34
1578 1666 6.537301 TGTTAGCCATTATTTTCTCTGTACCG 59.463 38.462 0.00 0.00 0.00 4.02
1579 1667 5.099042 AGCCATTATTTTCTCTGTACCGT 57.901 39.130 0.00 0.00 0.00 4.83
1580 1668 4.876107 AGCCATTATTTTCTCTGTACCGTG 59.124 41.667 0.00 0.00 0.00 4.94
1581 1669 4.873827 GCCATTATTTTCTCTGTACCGTGA 59.126 41.667 0.00 0.00 0.00 4.35
1582 1670 5.527582 GCCATTATTTTCTCTGTACCGTGAT 59.472 40.000 0.00 0.00 0.00 3.06
1583 1671 6.511767 GCCATTATTTTCTCTGTACCGTGATG 60.512 42.308 0.00 0.00 0.00 3.07
1584 1672 6.538742 CCATTATTTTCTCTGTACCGTGATGT 59.461 38.462 0.00 0.00 0.00 3.06
1585 1673 7.065803 CCATTATTTTCTCTGTACCGTGATGTT 59.934 37.037 0.00 0.00 0.00 2.71
1586 1674 7.972832 TTATTTTCTCTGTACCGTGATGTTT 57.027 32.000 0.00 0.00 0.00 2.83
1587 1675 5.917541 TTTTCTCTGTACCGTGATGTTTC 57.082 39.130 0.00 0.00 0.00 2.78
1588 1676 4.866508 TTCTCTGTACCGTGATGTTTCT 57.133 40.909 0.00 0.00 0.00 2.52
1589 1677 4.866508 TCTCTGTACCGTGATGTTTCTT 57.133 40.909 0.00 0.00 0.00 2.52
1590 1678 4.806330 TCTCTGTACCGTGATGTTTCTTC 58.194 43.478 0.00 0.00 0.00 2.87
1591 1679 3.921677 TCTGTACCGTGATGTTTCTTCC 58.078 45.455 0.00 0.00 0.00 3.46
1592 1680 3.576982 TCTGTACCGTGATGTTTCTTCCT 59.423 43.478 0.00 0.00 0.00 3.36
1593 1681 4.039973 TCTGTACCGTGATGTTTCTTCCTT 59.960 41.667 0.00 0.00 0.00 3.36
1594 1682 4.710324 TGTACCGTGATGTTTCTTCCTTT 58.290 39.130 0.00 0.00 0.00 3.11
1595 1683 4.513692 TGTACCGTGATGTTTCTTCCTTTG 59.486 41.667 0.00 0.00 0.00 2.77
1596 1684 2.884639 ACCGTGATGTTTCTTCCTTTGG 59.115 45.455 0.00 0.00 0.00 3.28
1597 1685 2.351738 CCGTGATGTTTCTTCCTTTGGC 60.352 50.000 0.00 0.00 0.00 4.52
1598 1686 2.351738 CGTGATGTTTCTTCCTTTGGCC 60.352 50.000 0.00 0.00 0.00 5.36
1599 1687 1.885887 TGATGTTTCTTCCTTTGGCCG 59.114 47.619 0.00 0.00 0.00 6.13
1600 1688 1.886542 GATGTTTCTTCCTTTGGCCGT 59.113 47.619 0.00 0.00 0.00 5.68
1601 1689 1.770294 TGTTTCTTCCTTTGGCCGTT 58.230 45.000 0.00 0.00 0.00 4.44
1602 1690 2.104170 TGTTTCTTCCTTTGGCCGTTT 58.896 42.857 0.00 0.00 0.00 3.60
1603 1691 2.498078 TGTTTCTTCCTTTGGCCGTTTT 59.502 40.909 0.00 0.00 0.00 2.43
1604 1692 3.055747 TGTTTCTTCCTTTGGCCGTTTTT 60.056 39.130 0.00 0.00 0.00 1.94
1605 1693 3.446310 TTCTTCCTTTGGCCGTTTTTC 57.554 42.857 0.00 0.00 0.00 2.29
1606 1694 2.661718 TCTTCCTTTGGCCGTTTTTCT 58.338 42.857 0.00 0.00 0.00 2.52
1607 1695 3.822940 TCTTCCTTTGGCCGTTTTTCTA 58.177 40.909 0.00 0.00 0.00 2.10
1608 1696 3.566742 TCTTCCTTTGGCCGTTTTTCTAC 59.433 43.478 0.00 0.00 0.00 2.59
1609 1697 2.933573 TCCTTTGGCCGTTTTTCTACA 58.066 42.857 0.00 0.00 0.00 2.74
1610 1698 2.882137 TCCTTTGGCCGTTTTTCTACAG 59.118 45.455 0.00 0.00 0.00 2.74
1611 1699 2.607038 CCTTTGGCCGTTTTTCTACAGC 60.607 50.000 0.00 0.00 0.00 4.40
1612 1700 1.681538 TTGGCCGTTTTTCTACAGCA 58.318 45.000 0.00 0.00 0.00 4.41
1613 1701 1.904287 TGGCCGTTTTTCTACAGCAT 58.096 45.000 0.00 0.00 0.00 3.79
1614 1702 1.539388 TGGCCGTTTTTCTACAGCATG 59.461 47.619 0.00 0.00 46.00 4.06
1615 1703 1.617740 GCCGTTTTTCTACAGCATGC 58.382 50.000 10.51 10.51 42.53 4.06
1616 1704 1.068610 GCCGTTTTTCTACAGCATGCA 60.069 47.619 21.98 0.00 42.53 3.96
1617 1705 2.606795 GCCGTTTTTCTACAGCATGCAA 60.607 45.455 21.98 1.21 42.53 4.08
1618 1706 3.236816 CCGTTTTTCTACAGCATGCAAG 58.763 45.455 21.98 14.52 42.53 4.01
1619 1707 2.658325 CGTTTTTCTACAGCATGCAAGC 59.342 45.455 21.98 5.62 42.53 4.01
1620 1708 3.641648 GTTTTTCTACAGCATGCAAGCA 58.358 40.909 21.98 1.51 42.53 3.91
1621 1709 4.050553 GTTTTTCTACAGCATGCAAGCAA 58.949 39.130 21.98 8.00 42.53 3.91
1622 1710 4.524316 TTTTCTACAGCATGCAAGCAAT 57.476 36.364 21.98 5.93 42.53 3.56
1623 1711 5.641783 TTTTCTACAGCATGCAAGCAATA 57.358 34.783 21.98 6.82 42.53 1.90
1624 1712 5.840243 TTTCTACAGCATGCAAGCAATAT 57.160 34.783 21.98 0.71 42.53 1.28
1625 1713 6.940831 TTTCTACAGCATGCAAGCAATATA 57.059 33.333 21.98 1.88 42.53 0.86
1626 1714 6.549912 TTCTACAGCATGCAAGCAATATAG 57.450 37.500 21.98 11.16 42.53 1.31
1627 1715 3.637998 ACAGCATGCAAGCAATATAGC 57.362 42.857 21.98 0.00 42.53 2.97
1628 1716 2.953648 ACAGCATGCAAGCAATATAGCA 59.046 40.909 21.98 0.00 42.53 3.49
1629 1717 3.243301 ACAGCATGCAAGCAATATAGCAC 60.243 43.478 21.98 0.00 42.53 4.40
1630 1718 2.295349 AGCATGCAAGCAATATAGCACC 59.705 45.455 21.98 0.00 40.14 5.01
1631 1719 2.295349 GCATGCAAGCAATATAGCACCT 59.705 45.455 14.21 0.00 40.14 4.00
1632 1720 3.855895 GCATGCAAGCAATATAGCACCTG 60.856 47.826 14.21 0.00 40.14 4.00
1633 1721 1.677576 TGCAAGCAATATAGCACCTGC 59.322 47.619 0.00 0.00 42.49 4.85
1634 1722 1.677576 GCAAGCAATATAGCACCTGCA 59.322 47.619 0.00 0.00 45.16 4.41
1635 1723 2.295349 GCAAGCAATATAGCACCTGCAT 59.705 45.455 0.00 0.00 45.16 3.96
1636 1724 3.855895 GCAAGCAATATAGCACCTGCATG 60.856 47.826 0.00 0.00 45.16 4.06
1637 1725 3.497103 AGCAATATAGCACCTGCATGA 57.503 42.857 0.00 0.00 45.16 3.07
1638 1726 3.409570 AGCAATATAGCACCTGCATGAG 58.590 45.455 0.00 0.00 45.16 2.90
1639 1727 2.095364 GCAATATAGCACCTGCATGAGC 60.095 50.000 3.29 3.29 45.16 4.26
1640 1728 2.486472 ATATAGCACCTGCATGAGCC 57.514 50.000 7.72 0.00 45.16 4.70
1641 1729 0.397941 TATAGCACCTGCATGAGCCC 59.602 55.000 7.72 0.00 45.16 5.19
1642 1730 2.671370 ATAGCACCTGCATGAGCCCG 62.671 60.000 7.72 0.00 45.16 6.13
1644 1732 3.129502 CACCTGCATGAGCCCGTG 61.130 66.667 0.00 0.00 41.13 4.94
1645 1733 3.321648 ACCTGCATGAGCCCGTGA 61.322 61.111 0.00 0.00 41.13 4.35
1646 1734 2.191375 CCTGCATGAGCCCGTGAT 59.809 61.111 0.00 0.00 41.13 3.06
1647 1735 1.452651 CCTGCATGAGCCCGTGATT 60.453 57.895 0.00 0.00 41.13 2.57
1648 1736 1.033746 CCTGCATGAGCCCGTGATTT 61.034 55.000 0.00 0.00 41.13 2.17
1649 1737 0.813184 CTGCATGAGCCCGTGATTTT 59.187 50.000 0.00 0.00 41.13 1.82
1650 1738 0.810648 TGCATGAGCCCGTGATTTTC 59.189 50.000 0.00 0.00 41.13 2.29
1651 1739 1.098050 GCATGAGCCCGTGATTTTCT 58.902 50.000 0.00 0.00 33.58 2.52
1652 1740 1.064654 GCATGAGCCCGTGATTTTCTC 59.935 52.381 0.00 0.00 33.58 2.87
1653 1741 2.636830 CATGAGCCCGTGATTTTCTCT 58.363 47.619 0.00 0.00 0.00 3.10
1654 1742 2.099141 TGAGCCCGTGATTTTCTCTG 57.901 50.000 0.00 0.00 0.00 3.35
1655 1743 1.347707 TGAGCCCGTGATTTTCTCTGT 59.652 47.619 0.00 0.00 0.00 3.41
1656 1744 1.734465 GAGCCCGTGATTTTCTCTGTG 59.266 52.381 0.00 0.00 0.00 3.66
1657 1745 1.347707 AGCCCGTGATTTTCTCTGTGA 59.652 47.619 0.00 0.00 0.00 3.58
1658 1746 1.734465 GCCCGTGATTTTCTCTGTGAG 59.266 52.381 0.00 0.00 0.00 3.51
1659 1747 2.350522 CCCGTGATTTTCTCTGTGAGG 58.649 52.381 0.00 0.00 0.00 3.86
1660 1748 2.350522 CCGTGATTTTCTCTGTGAGGG 58.649 52.381 0.00 0.00 0.00 4.30
1661 1749 1.734465 CGTGATTTTCTCTGTGAGGGC 59.266 52.381 0.00 0.00 0.00 5.19
1662 1750 2.087646 GTGATTTTCTCTGTGAGGGCC 58.912 52.381 0.00 0.00 0.00 5.80
1663 1751 1.988107 TGATTTTCTCTGTGAGGGCCT 59.012 47.619 5.25 5.25 0.00 5.19
1664 1752 2.026822 TGATTTTCTCTGTGAGGGCCTC 60.027 50.000 26.95 26.95 0.00 4.70
1665 1753 0.321671 TTTTCTCTGTGAGGGCCTCG 59.678 55.000 27.58 14.36 32.35 4.63
1666 1754 2.172483 TTTCTCTGTGAGGGCCTCGC 62.172 60.000 34.76 34.76 40.91 5.03
1676 1764 2.812499 GGCCTCGCCGTGATTAGA 59.188 61.111 0.00 0.00 39.62 2.10
1677 1765 1.300233 GGCCTCGCCGTGATTAGAG 60.300 63.158 0.00 0.00 39.62 2.43
1681 1769 2.339728 CTCGCCGTGATTAGAGGATC 57.660 55.000 0.00 0.00 0.00 3.36
1682 1770 1.609072 CTCGCCGTGATTAGAGGATCA 59.391 52.381 0.00 0.00 37.82 2.92
1683 1771 2.028876 TCGCCGTGATTAGAGGATCAA 58.971 47.619 0.00 0.00 37.75 2.57
1684 1772 2.429250 TCGCCGTGATTAGAGGATCAAA 59.571 45.455 0.00 0.00 37.75 2.69
1685 1773 3.069586 TCGCCGTGATTAGAGGATCAAAT 59.930 43.478 0.00 0.00 37.75 2.32
1686 1774 3.809832 CGCCGTGATTAGAGGATCAAATT 59.190 43.478 0.00 0.00 37.75 1.82
1687 1775 4.319046 CGCCGTGATTAGAGGATCAAATTG 60.319 45.833 0.00 0.00 37.75 2.32
1688 1776 4.816385 GCCGTGATTAGAGGATCAAATTGA 59.184 41.667 0.00 0.00 37.75 2.57
1689 1777 5.296780 GCCGTGATTAGAGGATCAAATTGAA 59.703 40.000 0.00 0.00 37.75 2.69
1695 1783 4.286297 AGAGGATCAAATTGAACGTGGA 57.714 40.909 0.00 0.00 37.82 4.02
1698 1786 4.455877 GAGGATCAAATTGAACGTGGAGTT 59.544 41.667 0.00 0.00 39.92 3.01
1699 1787 4.216257 AGGATCAAATTGAACGTGGAGTTG 59.784 41.667 0.00 0.00 44.35 3.16
1706 2248 1.338655 TGAACGTGGAGTTGATCGTCA 59.661 47.619 0.00 0.00 44.35 4.35
2043 2597 2.281345 GCCCCATCATGCTCTCCG 60.281 66.667 0.00 0.00 0.00 4.63
2190 2744 0.605319 GAACAAGCCGTCATCCCACA 60.605 55.000 0.00 0.00 0.00 4.17
2411 2965 1.073199 CAACCAGAGGCCCTTCGTT 59.927 57.895 0.00 0.00 0.00 3.85
2414 2968 1.374947 CCAGAGGCCCTTCGTTGAA 59.625 57.895 0.00 0.00 0.00 2.69
2455 3171 7.359431 GCAAGTAACGCAGTAACAACATACTAA 60.359 37.037 0.00 0.00 45.00 2.24
2595 3322 3.862124 AGCATCGCTCAACACGAC 58.138 55.556 0.00 0.00 43.23 4.34
2640 3371 7.251704 CATGTCTTCCCATGTACTGTATTTC 57.748 40.000 0.00 0.00 37.91 2.17
2641 3372 6.367374 TGTCTTCCCATGTACTGTATTTCA 57.633 37.500 0.00 0.00 0.00 2.69
2642 3373 6.957631 TGTCTTCCCATGTACTGTATTTCAT 58.042 36.000 0.00 0.00 0.00 2.57
2643 3374 7.402054 TGTCTTCCCATGTACTGTATTTCATT 58.598 34.615 0.00 0.00 0.00 2.57
2646 3377 7.339212 TCTTCCCATGTACTGTATTTCATTTGG 59.661 37.037 0.00 0.00 0.00 3.28
2673 3529 3.872354 TCAAAAGCGAGAAATTCACGTG 58.128 40.909 9.94 9.94 33.10 4.49
2681 3537 4.034048 GCGAGAAATTCACGTGGATAACAT 59.966 41.667 17.00 0.00 33.10 2.71
2753 3687 4.808895 TGACAGCAGTAACAGTAAGTTGTG 59.191 41.667 0.00 0.00 41.50 3.33
2763 3697 8.873144 AGTAACAGTAAGTTGTGACCCTTAATA 58.127 33.333 0.00 0.00 41.50 0.98
2764 3698 9.492973 GTAACAGTAAGTTGTGACCCTTAATAA 57.507 33.333 0.00 0.00 41.50 1.40
2788 3722 7.907214 ATTACTCAGGTGTGAAGTTTGATAC 57.093 36.000 0.00 0.00 30.14 2.24
2789 3723 5.552870 ACTCAGGTGTGAAGTTTGATACT 57.447 39.130 0.00 0.00 39.32 2.12
2853 3789 3.540314 TGGTGCAGCTCAAAAACATTT 57.460 38.095 18.08 0.00 0.00 2.32
2863 3799 4.507388 GCTCAAAAACATTTAAGCACAGCA 59.493 37.500 0.00 0.00 0.00 4.41
2881 3817 1.151908 AAAGGCCTACCAAACGCCA 59.848 52.632 5.16 0.00 45.56 5.69
2882 3818 0.468400 AAAGGCCTACCAAACGCCAA 60.468 50.000 5.16 0.00 45.56 4.52
2890 3826 1.227205 CCAAACGCCAAAGCAGCAA 60.227 52.632 0.00 0.00 39.83 3.91
2891 3827 1.489881 CCAAACGCCAAAGCAGCAAC 61.490 55.000 0.00 0.00 39.83 4.17
2899 3835 2.029110 GCCAAAGCAGCAACAGGAAATA 60.029 45.455 0.00 0.00 39.53 1.40
2910 3846 4.640201 GCAACAGGAAATATGCAGGACTTA 59.360 41.667 0.00 0.00 38.63 2.24
2915 3857 6.891908 ACAGGAAATATGCAGGACTTACAAAT 59.108 34.615 0.00 0.00 0.00 2.32
2933 3875 1.269958 ATGCACTCCACAGCTGAGTA 58.730 50.000 23.35 0.00 41.02 2.59
2934 3876 0.605083 TGCACTCCACAGCTGAGTAG 59.395 55.000 23.35 11.86 41.02 2.57
2979 3937 8.940768 ATGGAAAAATTAACATAACAATCCGG 57.059 30.769 0.00 0.00 0.00 5.14
2993 3952 3.440173 ACAATCCGGTCAACAACATCATC 59.560 43.478 0.00 0.00 0.00 2.92
2996 3955 3.684908 TCCGGTCAACAACATCATCAAT 58.315 40.909 0.00 0.00 0.00 2.57
3000 3959 7.223584 TCCGGTCAACAACATCATCAATATAT 58.776 34.615 0.00 0.00 0.00 0.86
3114 4073 3.911661 ACTCAAGTTCAGCAGCAATTC 57.088 42.857 0.00 0.00 0.00 2.17
3173 4139 1.332375 CGCGGAAGGAAACAAGAACAA 59.668 47.619 0.00 0.00 0.00 2.83
3184 4150 1.867233 ACAAGAACAACAGCTAGTGCG 59.133 47.619 0.00 0.00 45.42 5.34
3226 4193 3.255149 AGCAGCAATTTTCTCTGAGTTGG 59.745 43.478 4.32 0.00 0.00 3.77
3344 4312 0.658536 GCTGCACGCTCAAAAGTGAC 60.659 55.000 0.00 0.00 40.56 3.67
3412 4384 4.386711 TCGACGAGATAGATAAGCCTGAA 58.613 43.478 0.00 0.00 0.00 3.02
3415 4387 6.824196 TCGACGAGATAGATAAGCCTGAATAT 59.176 38.462 0.00 0.00 0.00 1.28
3419 4391 7.147759 ACGAGATAGATAAGCCTGAATATGCAT 60.148 37.037 3.79 3.79 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.527816 GCCTCAGTCTCTTGGAGATATCAT 59.472 45.833 5.32 0.00 40.98 2.45
20 22 1.839424 TCTCAAGACTCATCGCCTCA 58.161 50.000 0.00 0.00 0.00 3.86
50 52 7.773224 CCCAACAACAATAACTCATATCTGGTA 59.227 37.037 0.00 0.00 0.00 3.25
55 57 8.050778 TGTTCCCAACAACAATAACTCATATC 57.949 34.615 0.00 0.00 38.72 1.63
58 60 6.493115 TGATGTTCCCAACAACAATAACTCAT 59.507 34.615 0.00 0.00 45.86 2.90
211 220 0.030235 GTTTTGAGTTGGCCGGTGTC 59.970 55.000 1.90 0.00 0.00 3.67
217 226 0.673985 GGTGGAGTTTTGAGTTGGCC 59.326 55.000 0.00 0.00 0.00 5.36
226 235 1.412343 GCATGTTGGTGGTGGAGTTTT 59.588 47.619 0.00 0.00 0.00 2.43
236 245 0.247185 GGATTGTGGGCATGTTGGTG 59.753 55.000 0.00 0.00 0.00 4.17
243 252 3.461085 ACTAATCTCTGGATTGTGGGCAT 59.539 43.478 2.01 0.00 41.66 4.40
256 265 4.642885 CGAAGAGTTCTCCCACTAATCTCT 59.357 45.833 0.00 0.00 33.13 3.10
302 311 2.428187 ACGAAACCATGGGCGTCA 59.572 55.556 18.09 0.00 30.15 4.35
359 368 2.200092 TTGTGGGTCCCTTTGGGC 59.800 61.111 10.00 0.00 43.94 5.36
364 373 2.069165 GAGGCTGTTGTGGGTCCCTT 62.069 60.000 10.00 0.00 0.00 3.95
367 376 1.600916 GTGAGGCTGTTGTGGGTCC 60.601 63.158 0.00 0.00 0.00 4.46
382 391 0.679505 CGTCTTCCAAGGTCTGGTGA 59.320 55.000 0.00 0.00 46.51 4.02
440 449 6.439375 TGTATTACACAAGGGTCACAGATAGT 59.561 38.462 0.00 0.00 32.95 2.12
467 476 9.135843 GCAACTTTGCGATGTGTACTATATATA 57.864 33.333 0.00 0.00 45.11 0.86
468 477 8.018677 GCAACTTTGCGATGTGTACTATATAT 57.981 34.615 0.00 0.00 45.11 0.86
469 478 7.402811 GCAACTTTGCGATGTGTACTATATA 57.597 36.000 0.00 0.00 45.11 0.86
470 479 6.287107 GCAACTTTGCGATGTGTACTATAT 57.713 37.500 0.00 0.00 45.11 0.86
573 582 2.548057 TCTGCTCAAATTTGGTGTCGTC 59.452 45.455 17.90 1.43 0.00 4.20
649 659 2.725811 TTGGGATTTGAGCGCAACA 58.274 47.368 11.47 6.70 33.94 3.33
656 666 1.270550 GGTGCACTGTTGGGATTTGAG 59.729 52.381 17.98 0.00 0.00 3.02
703 713 1.538047 ACTGATGAACCATGTGGCAC 58.462 50.000 11.55 11.55 39.32 5.01
797 830 2.299013 TCACTACAGGACCATGTGACAC 59.701 50.000 0.00 0.00 33.45 3.67
817 850 5.221541 ACGAGTTCCCCTTATCATCTTCATC 60.222 44.000 0.00 0.00 0.00 2.92
843 881 0.828022 TGGTTGAAGTCTGGACGTGT 59.172 50.000 0.00 0.00 36.20 4.49
846 884 0.859232 CGTTGGTTGAAGTCTGGACG 59.141 55.000 0.00 0.00 36.20 4.79
875 913 4.735132 GCCGTGCCGTGCTACTCA 62.735 66.667 0.00 0.00 0.00 3.41
876 914 4.436998 AGCCGTGCCGTGCTACTC 62.437 66.667 8.13 0.00 33.30 2.59
877 915 4.436998 GAGCCGTGCCGTGCTACT 62.437 66.667 9.30 0.00 34.66 2.57
935 1020 2.639839 AGATTATGGCGCCAACCTAGAT 59.360 45.455 36.33 18.17 0.00 1.98
936 1021 2.047061 AGATTATGGCGCCAACCTAGA 58.953 47.619 36.33 15.76 0.00 2.43
963 1048 2.356535 GGTCTGGTTGATCTTGATGCCT 60.357 50.000 0.00 0.00 0.00 4.75
965 1050 1.667724 CGGTCTGGTTGATCTTGATGC 59.332 52.381 0.00 0.00 0.00 3.91
966 1051 2.674852 CACGGTCTGGTTGATCTTGATG 59.325 50.000 0.00 0.00 27.57 3.07
1251 1339 1.878656 GACCGTGTCCACCCTGAGAG 61.879 65.000 0.00 0.00 0.00 3.20
1252 1340 1.906824 GACCGTGTCCACCCTGAGA 60.907 63.158 0.00 0.00 0.00 3.27
1253 1341 2.657237 GACCGTGTCCACCCTGAG 59.343 66.667 0.00 0.00 0.00 3.35
1283 1371 4.083862 GGTGGCTCGGTCAGGGAC 62.084 72.222 0.00 0.00 0.00 4.46
1286 1374 3.530910 AAACGGTGGCTCGGTCAGG 62.531 63.158 0.14 0.00 0.00 3.86
1287 1375 2.030562 AAACGGTGGCTCGGTCAG 59.969 61.111 0.14 0.00 0.00 3.51
1288 1376 2.280524 CAAACGGTGGCTCGGTCA 60.281 61.111 0.14 0.00 0.00 4.02
1289 1377 3.047877 CCAAACGGTGGCTCGGTC 61.048 66.667 0.14 0.00 41.72 4.79
1347 1435 1.291877 CTTGAAACCAGGACCGCGAG 61.292 60.000 8.23 0.00 0.00 5.03
1348 1436 1.301401 CTTGAAACCAGGACCGCGA 60.301 57.895 8.23 0.00 0.00 5.87
1349 1437 2.325082 CCTTGAAACCAGGACCGCG 61.325 63.158 0.00 0.00 0.00 6.46
1350 1438 1.072505 TCCTTGAAACCAGGACCGC 59.927 57.895 0.00 0.00 0.00 5.68
1351 1439 2.928416 GTCCTTGAAACCAGGACCG 58.072 57.895 7.76 0.00 44.56 4.79
1354 1442 0.765135 TCCGGTCCTTGAAACCAGGA 60.765 55.000 0.00 0.00 37.24 3.86
1355 1443 0.605589 GTCCGGTCCTTGAAACCAGG 60.606 60.000 0.00 0.00 36.53 4.45
1356 1444 0.605589 GGTCCGGTCCTTGAAACCAG 60.606 60.000 10.82 0.00 36.53 4.00
1357 1445 1.452801 GGTCCGGTCCTTGAAACCA 59.547 57.895 10.82 0.00 36.53 3.67
1358 1446 1.670083 CGGTCCGGTCCTTGAAACC 60.670 63.158 15.98 5.40 0.00 3.27
1359 1447 1.670083 CCGGTCCGGTCCTTGAAAC 60.670 63.158 23.02 0.00 42.73 2.78
1360 1448 2.745037 CCGGTCCGGTCCTTGAAA 59.255 61.111 23.02 0.00 42.73 2.69
1405 1493 3.697747 TAGTGGTTGGCCGGTCCG 61.698 66.667 2.12 3.60 37.80 4.79
1406 1494 2.046604 GTAGTGGTTGGCCGGTCC 60.047 66.667 2.12 5.67 37.67 4.46
1407 1495 2.046604 GGTAGTGGTTGGCCGGTC 60.047 66.667 0.00 0.00 37.67 4.79
1408 1496 2.850130 TGGTAGTGGTTGGCCGGT 60.850 61.111 1.90 0.00 37.67 5.28
1409 1497 2.046314 CTGGTAGTGGTTGGCCGG 60.046 66.667 0.00 0.00 37.67 6.13
1410 1498 2.746277 GCTGGTAGTGGTTGGCCG 60.746 66.667 0.00 0.00 37.67 6.13
1411 1499 2.746277 CGCTGGTAGTGGTTGGCC 60.746 66.667 0.00 0.00 0.00 5.36
1412 1500 2.033194 GTCGCTGGTAGTGGTTGGC 61.033 63.158 0.00 0.00 0.00 4.52
1413 1501 1.736645 CGTCGCTGGTAGTGGTTGG 60.737 63.158 0.00 0.00 0.00 3.77
1414 1502 1.007336 GTCGTCGCTGGTAGTGGTTG 61.007 60.000 0.00 0.00 0.00 3.77
1415 1503 1.288127 GTCGTCGCTGGTAGTGGTT 59.712 57.895 0.00 0.00 0.00 3.67
1416 1504 2.960170 GTCGTCGCTGGTAGTGGT 59.040 61.111 0.00 0.00 0.00 4.16
1417 1505 2.202440 CGTCGTCGCTGGTAGTGG 60.202 66.667 0.00 0.00 0.00 4.00
1418 1506 1.796355 CACGTCGTCGCTGGTAGTG 60.796 63.158 0.99 0.00 41.18 2.74
1419 1507 2.559840 CACGTCGTCGCTGGTAGT 59.440 61.111 0.99 0.00 41.18 2.73
1420 1508 2.874780 GCACGTCGTCGCTGGTAG 60.875 66.667 0.99 0.00 41.18 3.18
1421 1509 3.662153 TGCACGTCGTCGCTGGTA 61.662 61.111 16.80 0.00 41.18 3.25
1445 1533 4.641645 TCACCCACCTTGCCAGCG 62.642 66.667 0.00 0.00 0.00 5.18
1446 1534 2.985847 GTCACCCACCTTGCCAGC 60.986 66.667 0.00 0.00 0.00 4.85
1447 1535 2.669569 CGTCACCCACCTTGCCAG 60.670 66.667 0.00 0.00 0.00 4.85
1448 1536 3.484806 ACGTCACCCACCTTGCCA 61.485 61.111 0.00 0.00 0.00 4.92
1449 1537 2.978010 CACGTCACCCACCTTGCC 60.978 66.667 0.00 0.00 0.00 4.52
1450 1538 3.660111 GCACGTCACCCACCTTGC 61.660 66.667 0.00 0.00 0.00 4.01
1451 1539 3.345808 CGCACGTCACCCACCTTG 61.346 66.667 0.00 0.00 0.00 3.61
1468 1556 4.664677 ACCTCGCCACAGTCGTGC 62.665 66.667 0.00 0.00 42.17 5.34
1469 1557 2.734723 CACCTCGCCACAGTCGTG 60.735 66.667 0.00 0.00 43.21 4.35
1470 1558 3.991051 CCACCTCGCCACAGTCGT 61.991 66.667 0.00 0.00 0.00 4.34
1471 1559 4.742201 CCCACCTCGCCACAGTCG 62.742 72.222 0.00 0.00 0.00 4.18
1481 1569 2.363711 TATCGCATGTCGCCCACCTC 62.364 60.000 4.90 0.00 37.30 3.85
1482 1570 2.369257 CTATCGCATGTCGCCCACCT 62.369 60.000 4.90 0.00 37.30 4.00
1483 1571 1.956170 CTATCGCATGTCGCCCACC 60.956 63.158 4.90 0.00 37.30 4.61
1484 1572 2.598632 GCTATCGCATGTCGCCCAC 61.599 63.158 4.90 0.00 37.30 4.61
1485 1573 2.280119 GCTATCGCATGTCGCCCA 60.280 61.111 4.90 0.00 37.30 5.36
1486 1574 3.406361 CGCTATCGCATGTCGCCC 61.406 66.667 4.90 0.00 37.30 6.13
1497 1585 4.918129 TTCGACGCCCGCGCTATC 62.918 66.667 9.37 0.00 44.19 2.08
1498 1586 4.925576 CTTCGACGCCCGCGCTAT 62.926 66.667 9.37 0.00 44.19 2.97
1510 1598 1.756950 ATAGCAGGTCGCCCTTCGA 60.757 57.895 0.00 0.00 46.29 3.71
1511 1599 1.592669 CATAGCAGGTCGCCCTTCG 60.593 63.158 0.00 0.00 44.04 3.79
1512 1600 1.227674 CCATAGCAGGTCGCCCTTC 60.228 63.158 0.00 0.00 44.04 3.46
1513 1601 1.271840 TTCCATAGCAGGTCGCCCTT 61.272 55.000 0.00 0.00 44.04 3.95
1514 1602 1.271840 TTTCCATAGCAGGTCGCCCT 61.272 55.000 0.00 0.00 44.04 5.19
1515 1603 0.815615 CTTTCCATAGCAGGTCGCCC 60.816 60.000 0.00 0.00 44.04 6.13
1516 1604 0.107654 ACTTTCCATAGCAGGTCGCC 60.108 55.000 0.00 0.00 44.04 5.54
1517 1605 1.009829 CACTTTCCATAGCAGGTCGC 58.990 55.000 0.00 0.00 42.91 5.19
1518 1606 2.672961 TCACTTTCCATAGCAGGTCG 57.327 50.000 0.00 0.00 0.00 4.79
1519 1607 4.125703 CAGATCACTTTCCATAGCAGGTC 58.874 47.826 0.00 0.00 0.00 3.85
1520 1608 3.118112 CCAGATCACTTTCCATAGCAGGT 60.118 47.826 0.00 0.00 0.00 4.00
1521 1609 3.474600 CCAGATCACTTTCCATAGCAGG 58.525 50.000 0.00 0.00 0.00 4.85
1522 1610 3.118112 ACCCAGATCACTTTCCATAGCAG 60.118 47.826 0.00 0.00 0.00 4.24
1523 1611 2.846206 ACCCAGATCACTTTCCATAGCA 59.154 45.455 0.00 0.00 0.00 3.49
1524 1612 3.209410 CACCCAGATCACTTTCCATAGC 58.791 50.000 0.00 0.00 0.00 2.97
1525 1613 3.813443 CCACCCAGATCACTTTCCATAG 58.187 50.000 0.00 0.00 0.00 2.23
1526 1614 2.092429 GCCACCCAGATCACTTTCCATA 60.092 50.000 0.00 0.00 0.00 2.74
1527 1615 1.341383 GCCACCCAGATCACTTTCCAT 60.341 52.381 0.00 0.00 0.00 3.41
1528 1616 0.038166 GCCACCCAGATCACTTTCCA 59.962 55.000 0.00 0.00 0.00 3.53
1529 1617 1.026718 CGCCACCCAGATCACTTTCC 61.027 60.000 0.00 0.00 0.00 3.13
1530 1618 1.648467 GCGCCACCCAGATCACTTTC 61.648 60.000 0.00 0.00 0.00 2.62
1531 1619 1.675641 GCGCCACCCAGATCACTTT 60.676 57.895 0.00 0.00 0.00 2.66
1532 1620 2.045926 GCGCCACCCAGATCACTT 60.046 61.111 0.00 0.00 0.00 3.16
1533 1621 4.457496 CGCGCCACCCAGATCACT 62.457 66.667 0.00 0.00 0.00 3.41
1551 1639 6.442513 ACAGAGAAAATAATGGCTAACAGC 57.557 37.500 0.00 0.00 41.46 4.40
1552 1640 7.254455 CGGTACAGAGAAAATAATGGCTAACAG 60.254 40.741 0.00 0.00 0.00 3.16
1553 1641 6.537301 CGGTACAGAGAAAATAATGGCTAACA 59.463 38.462 0.00 0.00 0.00 2.41
1554 1642 6.537660 ACGGTACAGAGAAAATAATGGCTAAC 59.462 38.462 0.00 0.00 0.00 2.34
1555 1643 6.537301 CACGGTACAGAGAAAATAATGGCTAA 59.463 38.462 0.00 0.00 0.00 3.09
1556 1644 6.046593 CACGGTACAGAGAAAATAATGGCTA 58.953 40.000 0.00 0.00 0.00 3.93
1557 1645 4.876107 CACGGTACAGAGAAAATAATGGCT 59.124 41.667 0.00 0.00 0.00 4.75
1558 1646 4.873827 TCACGGTACAGAGAAAATAATGGC 59.126 41.667 0.00 0.00 0.00 4.40
1559 1647 6.538742 ACATCACGGTACAGAGAAAATAATGG 59.461 38.462 0.00 0.00 0.00 3.16
1560 1648 7.539712 ACATCACGGTACAGAGAAAATAATG 57.460 36.000 0.00 0.00 0.00 1.90
1561 1649 8.561738 AAACATCACGGTACAGAGAAAATAAT 57.438 30.769 0.00 0.00 0.00 1.28
1562 1650 7.876068 AGAAACATCACGGTACAGAGAAAATAA 59.124 33.333 0.00 0.00 0.00 1.40
1563 1651 7.383687 AGAAACATCACGGTACAGAGAAAATA 58.616 34.615 0.00 0.00 0.00 1.40
1564 1652 6.231211 AGAAACATCACGGTACAGAGAAAAT 58.769 36.000 0.00 0.00 0.00 1.82
1565 1653 5.607477 AGAAACATCACGGTACAGAGAAAA 58.393 37.500 0.00 0.00 0.00 2.29
1566 1654 5.209818 AGAAACATCACGGTACAGAGAAA 57.790 39.130 0.00 0.00 0.00 2.52
1567 1655 4.866508 AGAAACATCACGGTACAGAGAA 57.133 40.909 0.00 0.00 0.00 2.87
1568 1656 4.321750 GGAAGAAACATCACGGTACAGAGA 60.322 45.833 0.00 0.00 0.00 3.10
1569 1657 3.927142 GGAAGAAACATCACGGTACAGAG 59.073 47.826 0.00 0.00 0.00 3.35
1570 1658 3.576982 AGGAAGAAACATCACGGTACAGA 59.423 43.478 0.00 0.00 0.00 3.41
1571 1659 3.926616 AGGAAGAAACATCACGGTACAG 58.073 45.455 0.00 0.00 0.00 2.74
1572 1660 4.345859 AAGGAAGAAACATCACGGTACA 57.654 40.909 0.00 0.00 0.00 2.90
1573 1661 4.083484 CCAAAGGAAGAAACATCACGGTAC 60.083 45.833 0.00 0.00 0.00 3.34
1574 1662 4.069304 CCAAAGGAAGAAACATCACGGTA 58.931 43.478 0.00 0.00 0.00 4.02
1575 1663 2.884639 CCAAAGGAAGAAACATCACGGT 59.115 45.455 0.00 0.00 0.00 4.83
1576 1664 2.351738 GCCAAAGGAAGAAACATCACGG 60.352 50.000 0.00 0.00 0.00 4.94
1577 1665 2.351738 GGCCAAAGGAAGAAACATCACG 60.352 50.000 0.00 0.00 0.00 4.35
1578 1666 2.351738 CGGCCAAAGGAAGAAACATCAC 60.352 50.000 2.24 0.00 0.00 3.06
1579 1667 1.885887 CGGCCAAAGGAAGAAACATCA 59.114 47.619 2.24 0.00 0.00 3.07
1580 1668 1.886542 ACGGCCAAAGGAAGAAACATC 59.113 47.619 2.24 0.00 0.00 3.06
1581 1669 1.995376 ACGGCCAAAGGAAGAAACAT 58.005 45.000 2.24 0.00 0.00 2.71
1582 1670 1.770294 AACGGCCAAAGGAAGAAACA 58.230 45.000 2.24 0.00 0.00 2.83
1583 1671 2.882927 AAACGGCCAAAGGAAGAAAC 57.117 45.000 2.24 0.00 0.00 2.78
1584 1672 3.449377 AGAAAAACGGCCAAAGGAAGAAA 59.551 39.130 2.24 0.00 0.00 2.52
1585 1673 3.028130 AGAAAAACGGCCAAAGGAAGAA 58.972 40.909 2.24 0.00 0.00 2.52
1586 1674 2.661718 AGAAAAACGGCCAAAGGAAGA 58.338 42.857 2.24 0.00 0.00 2.87
1587 1675 3.316868 TGTAGAAAAACGGCCAAAGGAAG 59.683 43.478 2.24 0.00 0.00 3.46
1588 1676 3.288964 TGTAGAAAAACGGCCAAAGGAA 58.711 40.909 2.24 0.00 0.00 3.36
1589 1677 2.882137 CTGTAGAAAAACGGCCAAAGGA 59.118 45.455 2.24 0.00 0.00 3.36
1590 1678 2.607038 GCTGTAGAAAAACGGCCAAAGG 60.607 50.000 2.24 0.00 44.45 3.11
1591 1679 2.661594 GCTGTAGAAAAACGGCCAAAG 58.338 47.619 2.24 0.00 44.45 2.77
1592 1680 2.785713 GCTGTAGAAAAACGGCCAAA 57.214 45.000 2.24 0.00 44.45 3.28
1597 1685 2.987413 TGCATGCTGTAGAAAAACGG 57.013 45.000 20.33 0.00 0.00 4.44
1598 1686 2.658325 GCTTGCATGCTGTAGAAAAACG 59.342 45.455 20.33 0.00 0.00 3.60
1599 1687 3.641648 TGCTTGCATGCTGTAGAAAAAC 58.358 40.909 23.31 0.00 0.00 2.43
1600 1688 4.319139 TTGCTTGCATGCTGTAGAAAAA 57.681 36.364 23.31 5.96 0.00 1.94
1601 1689 4.524316 ATTGCTTGCATGCTGTAGAAAA 57.476 36.364 23.31 9.44 0.00 2.29
1602 1690 5.840243 ATATTGCTTGCATGCTGTAGAAA 57.160 34.783 23.31 14.07 0.00 2.52
1603 1691 5.049198 GCTATATTGCTTGCATGCTGTAGAA 60.049 40.000 23.31 10.75 0.00 2.10
1604 1692 4.453478 GCTATATTGCTTGCATGCTGTAGA 59.547 41.667 23.31 12.91 0.00 2.59
1605 1693 4.214758 TGCTATATTGCTTGCATGCTGTAG 59.785 41.667 23.31 16.30 0.00 2.74
1606 1694 4.023792 GTGCTATATTGCTTGCATGCTGTA 60.024 41.667 23.31 16.13 37.76 2.74
1607 1695 2.953648 TGCTATATTGCTTGCATGCTGT 59.046 40.909 23.31 14.68 0.00 4.40
1608 1696 3.305964 GTGCTATATTGCTTGCATGCTG 58.694 45.455 23.31 12.76 37.76 4.41
1609 1697 2.295349 GGTGCTATATTGCTTGCATGCT 59.705 45.455 23.31 8.62 37.76 3.79
1610 1698 2.295349 AGGTGCTATATTGCTTGCATGC 59.705 45.455 17.19 17.19 37.76 4.06
1611 1699 3.855895 GCAGGTGCTATATTGCTTGCATG 60.856 47.826 19.76 14.24 37.76 4.06
1612 1700 2.295349 GCAGGTGCTATATTGCTTGCAT 59.705 45.455 19.76 5.25 37.76 3.96
1613 1701 1.677576 GCAGGTGCTATATTGCTTGCA 59.322 47.619 19.76 0.00 36.40 4.08
1614 1702 1.677576 TGCAGGTGCTATATTGCTTGC 59.322 47.619 18.71 18.71 42.66 4.01
1615 1703 3.566742 TCATGCAGGTGCTATATTGCTTG 59.433 43.478 10.48 7.37 42.66 4.01
1616 1704 3.819337 CTCATGCAGGTGCTATATTGCTT 59.181 43.478 10.48 0.00 42.66 3.91
1617 1705 3.409570 CTCATGCAGGTGCTATATTGCT 58.590 45.455 10.48 0.00 42.66 3.91
1618 1706 2.095364 GCTCATGCAGGTGCTATATTGC 60.095 50.000 17.34 1.87 42.66 3.56
1619 1707 2.486982 GGCTCATGCAGGTGCTATATTG 59.513 50.000 22.66 0.00 42.66 1.90
1620 1708 2.553904 GGGCTCATGCAGGTGCTATATT 60.554 50.000 22.66 0.00 42.66 1.28
1621 1709 1.004044 GGGCTCATGCAGGTGCTATAT 59.996 52.381 22.66 0.00 42.66 0.86
1622 1710 0.397941 GGGCTCATGCAGGTGCTATA 59.602 55.000 22.66 0.00 42.66 1.31
1623 1711 1.150081 GGGCTCATGCAGGTGCTAT 59.850 57.895 22.66 0.00 42.66 2.97
1624 1712 2.591753 GGGCTCATGCAGGTGCTA 59.408 61.111 22.66 0.00 42.66 3.49
1625 1713 4.790962 CGGGCTCATGCAGGTGCT 62.791 66.667 22.66 0.00 42.66 4.40
1627 1715 2.881539 ATCACGGGCTCATGCAGGTG 62.882 60.000 0.00 0.00 41.83 4.00
1628 1716 2.202236 AATCACGGGCTCATGCAGGT 62.202 55.000 0.00 0.00 41.91 4.00
1629 1717 1.033746 AAATCACGGGCTCATGCAGG 61.034 55.000 0.00 0.00 41.91 4.85
1630 1718 0.813184 AAAATCACGGGCTCATGCAG 59.187 50.000 0.00 0.00 41.91 4.41
1631 1719 0.810648 GAAAATCACGGGCTCATGCA 59.189 50.000 0.00 0.00 41.91 3.96
1632 1720 1.064654 GAGAAAATCACGGGCTCATGC 59.935 52.381 0.00 0.00 38.76 4.06
1633 1721 2.353889 CAGAGAAAATCACGGGCTCATG 59.646 50.000 0.00 0.00 0.00 3.07
1634 1722 2.026822 ACAGAGAAAATCACGGGCTCAT 60.027 45.455 0.00 0.00 0.00 2.90
1635 1723 1.347707 ACAGAGAAAATCACGGGCTCA 59.652 47.619 0.00 0.00 0.00 4.26
1636 1724 1.734465 CACAGAGAAAATCACGGGCTC 59.266 52.381 0.00 0.00 0.00 4.70
1637 1725 1.347707 TCACAGAGAAAATCACGGGCT 59.652 47.619 0.00 0.00 0.00 5.19
1638 1726 1.734465 CTCACAGAGAAAATCACGGGC 59.266 52.381 0.00 0.00 0.00 6.13
1639 1727 2.350522 CCTCACAGAGAAAATCACGGG 58.649 52.381 0.00 0.00 0.00 5.28
1640 1728 2.350522 CCCTCACAGAGAAAATCACGG 58.649 52.381 0.00 0.00 0.00 4.94
1641 1729 1.734465 GCCCTCACAGAGAAAATCACG 59.266 52.381 0.00 0.00 0.00 4.35
1642 1730 2.087646 GGCCCTCACAGAGAAAATCAC 58.912 52.381 0.00 0.00 0.00 3.06
1643 1731 1.988107 AGGCCCTCACAGAGAAAATCA 59.012 47.619 0.00 0.00 0.00 2.57
1644 1732 2.637947 GAGGCCCTCACAGAGAAAATC 58.362 52.381 5.69 0.00 0.00 2.17
1645 1733 1.065854 CGAGGCCCTCACAGAGAAAAT 60.066 52.381 12.13 0.00 0.00 1.82
1646 1734 0.321671 CGAGGCCCTCACAGAGAAAA 59.678 55.000 12.13 0.00 0.00 2.29
1647 1735 1.975327 CGAGGCCCTCACAGAGAAA 59.025 57.895 12.13 0.00 0.00 2.52
1648 1736 2.650116 GCGAGGCCCTCACAGAGAA 61.650 63.158 12.13 0.00 0.00 2.87
1649 1737 3.071206 GCGAGGCCCTCACAGAGA 61.071 66.667 12.13 0.00 0.00 3.10
1650 1738 4.154347 GGCGAGGCCCTCACAGAG 62.154 72.222 12.13 0.00 44.06 3.35
1659 1747 1.300233 CTCTAATCACGGCGAGGCC 60.300 63.158 16.62 0.00 46.75 5.19
1660 1748 1.300233 CCTCTAATCACGGCGAGGC 60.300 63.158 16.62 0.00 36.91 4.70
1661 1749 0.962489 ATCCTCTAATCACGGCGAGG 59.038 55.000 16.62 8.24 43.44 4.63
1662 1750 1.609072 TGATCCTCTAATCACGGCGAG 59.391 52.381 16.62 5.72 30.76 5.03
1663 1751 1.687563 TGATCCTCTAATCACGGCGA 58.312 50.000 16.62 0.00 30.76 5.54
1664 1752 2.509052 TTGATCCTCTAATCACGGCG 57.491 50.000 4.80 4.80 35.44 6.46
1665 1753 4.816385 TCAATTTGATCCTCTAATCACGGC 59.184 41.667 0.00 0.00 35.44 5.68
1666 1754 6.510157 CGTTCAATTTGATCCTCTAATCACGG 60.510 42.308 0.00 0.00 35.44 4.94
1667 1755 6.036083 ACGTTCAATTTGATCCTCTAATCACG 59.964 38.462 0.00 5.78 35.44 4.35
1668 1756 7.182761 CACGTTCAATTTGATCCTCTAATCAC 58.817 38.462 0.00 0.00 35.44 3.06
1669 1757 6.316140 CCACGTTCAATTTGATCCTCTAATCA 59.684 38.462 0.00 0.00 33.88 2.57
1670 1758 6.538742 TCCACGTTCAATTTGATCCTCTAATC 59.461 38.462 0.00 0.00 0.00 1.75
1671 1759 6.414732 TCCACGTTCAATTTGATCCTCTAAT 58.585 36.000 0.00 0.00 0.00 1.73
1672 1760 5.800296 TCCACGTTCAATTTGATCCTCTAA 58.200 37.500 0.00 0.00 0.00 2.10
1673 1761 5.046591 ACTCCACGTTCAATTTGATCCTCTA 60.047 40.000 0.00 0.00 0.00 2.43
1674 1762 4.256920 CTCCACGTTCAATTTGATCCTCT 58.743 43.478 0.00 0.00 0.00 3.69
1675 1763 4.003648 ACTCCACGTTCAATTTGATCCTC 58.996 43.478 0.00 0.00 0.00 3.71
1676 1764 4.021102 ACTCCACGTTCAATTTGATCCT 57.979 40.909 0.00 0.00 0.00 3.24
1677 1765 4.215399 TCAACTCCACGTTCAATTTGATCC 59.785 41.667 0.00 0.00 32.27 3.36
1678 1766 5.356882 TCAACTCCACGTTCAATTTGATC 57.643 39.130 0.00 0.00 32.27 2.92
1679 1767 5.390885 CGATCAACTCCACGTTCAATTTGAT 60.391 40.000 0.00 8.25 35.45 2.57
1680 1768 4.084066 CGATCAACTCCACGTTCAATTTGA 60.084 41.667 0.00 0.00 32.27 2.69
1681 1769 4.151070 CGATCAACTCCACGTTCAATTTG 58.849 43.478 0.00 0.00 32.27 2.32
1682 1770 3.813166 ACGATCAACTCCACGTTCAATTT 59.187 39.130 0.00 0.00 35.47 1.82
1683 1771 3.399330 ACGATCAACTCCACGTTCAATT 58.601 40.909 0.00 0.00 35.47 2.32
1684 1772 2.993899 GACGATCAACTCCACGTTCAAT 59.006 45.455 0.00 0.00 39.04 2.57
1685 1773 2.223852 TGACGATCAACTCCACGTTCAA 60.224 45.455 0.00 0.00 39.04 2.69
1686 1774 1.338655 TGACGATCAACTCCACGTTCA 59.661 47.619 0.00 0.00 39.04 3.18
1687 1775 2.060326 TGACGATCAACTCCACGTTC 57.940 50.000 0.00 0.00 39.04 3.95
1688 1776 2.404215 CTTGACGATCAACTCCACGTT 58.596 47.619 0.00 0.00 39.04 3.99
1689 1777 1.336887 CCTTGACGATCAACTCCACGT 60.337 52.381 0.00 0.00 41.57 4.49
1695 1783 2.834549 AGATGTCCCTTGACGATCAACT 59.165 45.455 0.00 0.00 44.86 3.16
1698 1786 2.168521 GGAAGATGTCCCTTGACGATCA 59.831 50.000 0.00 0.00 44.86 2.92
1699 1787 2.827652 GGAAGATGTCCCTTGACGATC 58.172 52.381 0.00 0.00 44.86 3.69
1749 2291 4.778143 GAACCCGCCGGCATCTGT 62.778 66.667 28.98 14.27 0.00 3.41
1934 2488 1.375908 CAGCTCCCGCTTGTAGCAA 60.376 57.895 0.00 0.00 46.47 3.91
2043 2597 0.107993 GGGCCGTAGTTGTAGTTCCC 60.108 60.000 0.00 0.00 0.00 3.97
2411 2965 1.203038 TGCTGGATCAAAAGCCCTTCA 60.203 47.619 10.66 0.00 38.71 3.02
2414 2968 1.203100 ACTTGCTGGATCAAAAGCCCT 60.203 47.619 10.66 0.00 38.71 5.19
2455 3171 5.381757 AGGACTGACGCTAGATTTAGATCT 58.618 41.667 0.00 0.00 44.67 2.75
2543 3259 6.036577 ACGGCAAGTTTATTCATCCATTTT 57.963 33.333 0.00 0.00 0.00 1.82
2595 3322 4.204012 TGTTTTCAGTAAAGGACCTGTGG 58.796 43.478 0.00 0.00 0.00 4.17
2633 3364 9.638239 GCTTTTGAGTTATCCAAATGAAATACA 57.362 29.630 0.00 0.00 34.02 2.29
2634 3365 8.798153 CGCTTTTGAGTTATCCAAATGAAATAC 58.202 33.333 0.00 0.00 34.02 1.89
2635 3366 8.735315 TCGCTTTTGAGTTATCCAAATGAAATA 58.265 29.630 0.00 0.00 34.02 1.40
2636 3367 7.601856 TCGCTTTTGAGTTATCCAAATGAAAT 58.398 30.769 0.00 0.00 34.02 2.17
2637 3368 6.976088 TCGCTTTTGAGTTATCCAAATGAAA 58.024 32.000 0.00 0.00 34.02 2.69
2638 3369 6.429692 TCTCGCTTTTGAGTTATCCAAATGAA 59.570 34.615 0.00 0.00 37.28 2.57
2639 3370 5.937540 TCTCGCTTTTGAGTTATCCAAATGA 59.062 36.000 0.00 0.00 37.28 2.57
2640 3371 6.182039 TCTCGCTTTTGAGTTATCCAAATG 57.818 37.500 0.00 0.00 37.28 2.32
2641 3372 6.817765 TTCTCGCTTTTGAGTTATCCAAAT 57.182 33.333 0.00 0.00 37.28 2.32
2642 3373 6.627395 TTTCTCGCTTTTGAGTTATCCAAA 57.373 33.333 0.00 0.00 37.28 3.28
2643 3374 6.817765 ATTTCTCGCTTTTGAGTTATCCAA 57.182 33.333 0.00 0.00 37.28 3.53
2646 3377 6.462949 CGTGAATTTCTCGCTTTTGAGTTATC 59.537 38.462 7.80 0.00 37.28 1.75
2714 3621 8.353423 ACTGCTGTCAGGTAATTTTCATATTT 57.647 30.769 1.14 0.00 44.54 1.40
2753 3687 7.562135 TCACACCTGAGTAATTATTAAGGGTC 58.438 38.462 14.39 0.00 0.00 4.46
2763 3697 8.157476 AGTATCAAACTTCACACCTGAGTAATT 58.843 33.333 0.00 0.00 33.35 1.40
2764 3698 7.680730 AGTATCAAACTTCACACCTGAGTAAT 58.319 34.615 0.00 0.00 33.35 1.89
2787 3721 5.165961 TGCCTCTTGTGCTAATTTCTAGT 57.834 39.130 0.00 0.00 0.00 2.57
2788 3722 4.034975 GCTGCCTCTTGTGCTAATTTCTAG 59.965 45.833 0.00 0.00 0.00 2.43
2789 3723 3.941483 GCTGCCTCTTGTGCTAATTTCTA 59.059 43.478 0.00 0.00 0.00 2.10
2853 3789 1.613255 GGTAGGCCTTTGCTGTGCTTA 60.613 52.381 12.58 0.00 37.74 3.09
2881 3817 3.258872 TGCATATTTCCTGTTGCTGCTTT 59.741 39.130 0.00 0.00 36.10 3.51
2882 3818 2.827322 TGCATATTTCCTGTTGCTGCTT 59.173 40.909 0.00 0.00 36.10 3.91
2890 3826 5.435686 TGTAAGTCCTGCATATTTCCTGT 57.564 39.130 0.00 0.00 0.00 4.00
2891 3827 6.757897 TTTGTAAGTCCTGCATATTTCCTG 57.242 37.500 0.00 0.00 0.00 3.86
2899 3835 3.424703 AGTGCATTTGTAAGTCCTGCAT 58.575 40.909 0.00 0.00 43.89 3.96
2910 3846 0.956633 CAGCTGTGGAGTGCATTTGT 59.043 50.000 5.25 0.00 0.00 2.83
2915 3857 0.605083 CTACTCAGCTGTGGAGTGCA 59.395 55.000 18.19 0.00 44.86 4.57
2933 3875 8.593945 TCCATTGGAACTTCTTATTATTTGCT 57.406 30.769 1.94 0.00 0.00 3.91
2934 3876 9.651913 TTTCCATTGGAACTTCTTATTATTTGC 57.348 29.630 17.77 0.00 41.87 3.68
2961 3903 7.455641 TGTTGACCGGATTGTTATGTTAATT 57.544 32.000 9.46 0.00 0.00 1.40
2993 3952 8.558700 TGTGTTGTTGATCGGATTGATATATTG 58.441 33.333 0.00 0.00 37.47 1.90
2996 3955 8.675705 AATGTGTTGTTGATCGGATTGATATA 57.324 30.769 0.00 0.00 37.47 0.86
3000 3959 7.389803 AATAATGTGTTGTTGATCGGATTGA 57.610 32.000 0.00 0.00 0.00 2.57
3114 4073 3.613952 TTTGCTGCGCTTGCCGATG 62.614 57.895 19.73 0.00 40.02 3.84
3173 4139 2.357517 GCACACCGCACTAGCTGT 60.358 61.111 0.00 0.00 41.79 4.40
3184 4150 2.743928 CCGAGGCAGAAGCACACC 60.744 66.667 0.00 0.00 44.61 4.16
3226 4193 1.376553 GACTGCTCCCTGAAGCCAC 60.377 63.158 0.00 0.00 41.77 5.01
3249 4216 1.455786 CGCAAACTAGTGACAAGGACG 59.544 52.381 0.00 0.00 0.00 4.79
3344 4312 3.510388 TGGTTAGCTCTTCTGACGATG 57.490 47.619 0.00 0.00 32.53 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.