Multiple sequence alignment - TraesCS2A01G557800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G557800 chr2A 100.000 3475 0 0 1 3475 761277387 761280861 0.000000e+00 6418.0
1 TraesCS2A01G557800 chr2A 86.066 1421 165 13 1066 2464 52427833 52426424 0.000000e+00 1496.0
2 TraesCS2A01G557800 chr2A 81.550 1561 228 34 935 2457 52540894 52539356 0.000000e+00 1232.0
3 TraesCS2A01G557800 chr2A 81.818 1507 208 33 988 2456 52573151 52571673 0.000000e+00 1205.0
4 TraesCS2A01G557800 chr2A 80.818 1564 240 36 935 2457 52756571 52758115 0.000000e+00 1171.0
5 TraesCS2A01G557800 chr2A 93.519 216 10 2 719 934 757966245 757966456 5.600000e-83 318.0
6 TraesCS2A01G557800 chr2A 82.891 339 41 5 394 721 52573544 52573212 4.390000e-74 289.0
7 TraesCS2A01G557800 chr2A 91.617 167 14 0 2516 2682 52425932 52425766 7.500000e-57 231.0
8 TraesCS2A01G557800 chr2A 76.275 510 73 29 2523 3006 52538883 52538396 9.700000e-56 228.0
9 TraesCS2A01G557800 chr2A 87.059 85 9 1 573 657 52428309 52428227 1.030000e-15 95.3
10 TraesCS2A01G557800 chr2A 93.651 63 4 0 394 456 52428609 52428547 1.030000e-15 95.3
11 TraesCS2A01G557800 chr2B 96.117 1545 27 12 935 2461 794031829 794030300 0.000000e+00 2490.0
12 TraesCS2A01G557800 chr2B 85.867 1493 180 14 988 2460 79671762 79670281 0.000000e+00 1559.0
13 TraesCS2A01G557800 chr2B 95.682 741 11 9 1 721 794032560 794031821 0.000000e+00 1171.0
14 TraesCS2A01G557800 chr2B 80.901 1576 221 32 935 2457 79709170 79707622 0.000000e+00 1170.0
15 TraesCS2A01G557800 chr2B 87.161 701 41 20 2471 3153 794029839 794029170 0.000000e+00 750.0
16 TraesCS2A01G557800 chr2B 83.776 339 38 5 394 721 79709494 79709162 4.360000e-79 305.0
17 TraesCS2A01G557800 chr2B 84.564 149 17 2 573 721 79671967 79671825 3.620000e-30 143.0
18 TraesCS2A01G557800 chr2B 93.651 63 4 0 394 456 79672253 79672191 1.030000e-15 95.3
19 TraesCS2A01G557800 chr2D 81.028 1576 230 38 935 2466 51253202 51254752 0.000000e+00 1190.0
20 TraesCS2A01G557800 chr2D 81.095 1571 218 34 935 2457 51160237 51158698 0.000000e+00 1182.0
21 TraesCS2A01G557800 chr2D 88.713 567 47 2 988 1537 51137771 51137205 0.000000e+00 676.0
22 TraesCS2A01G557800 chr2D 82.793 401 60 6 2060 2460 51132097 51131706 1.980000e-92 350.0
23 TraesCS2A01G557800 chr2D 82.934 334 39 6 399 721 51160555 51160229 5.680000e-73 285.0
24 TraesCS2A01G557800 chr2D 76.560 593 69 39 2466 3025 51131252 51130697 9.570000e-66 261.0
25 TraesCS2A01G557800 chr2D 83.240 179 25 3 1 175 281292365 281292542 3.590000e-35 159.0
26 TraesCS2A01G557800 chr7B 80.850 1483 238 26 1000 2457 26654211 26652750 0.000000e+00 1123.0
27 TraesCS2A01G557800 chr7B 83.871 155 21 2 567 721 26654430 26654280 1.010000e-30 145.0
28 TraesCS2A01G557800 chr7D 81.562 1242 199 19 1227 2457 79360801 79359579 0.000000e+00 998.0
29 TraesCS2A01G557800 chr7D 91.852 270 18 2 3206 3475 62129071 62129336 1.180000e-99 374.0
30 TraesCS2A01G557800 chr7D 91.481 270 22 1 3206 3475 401123495 401123763 1.520000e-98 370.0
31 TraesCS2A01G557800 chr7D 88.415 164 19 0 2519 2682 79359083 79358920 7.610000e-47 198.0
32 TraesCS2A01G557800 chr7D 84.500 200 22 4 2479 2678 76398876 76399066 4.580000e-44 189.0
33 TraesCS2A01G557800 chr7D 82.888 187 23 4 535 721 79376415 79376238 3.590000e-35 159.0
34 TraesCS2A01G557800 chr7A 81.425 1249 190 26 1224 2457 82155407 82154186 0.000000e+00 983.0
35 TraesCS2A01G557800 chr7A 92.453 265 20 0 3206 3470 316107 315843 2.530000e-101 379.0
36 TraesCS2A01G557800 chr7A 84.404 218 25 4 2465 2682 82153731 82153523 4.550000e-49 206.0
37 TraesCS2A01G557800 chr7A 86.164 159 22 0 2519 2677 80315870 80316028 4.610000e-39 172.0
38 TraesCS2A01G557800 chr4B 93.633 267 16 1 3206 3472 489397824 489397559 6.990000e-107 398.0
39 TraesCS2A01G557800 chr1D 92.565 269 20 0 3206 3474 279520144 279519876 1.510000e-103 387.0
40 TraesCS2A01G557800 chr1D 92.509 267 20 0 3206 3472 319516453 319516719 1.960000e-102 383.0
41 TraesCS2A01G557800 chr1D 82.584 178 25 5 217 392 11758451 11758624 6.010000e-33 152.0
42 TraesCS2A01G557800 chr4D 93.130 262 18 0 3211 3472 132949911 132949650 5.440000e-103 385.0
43 TraesCS2A01G557800 chr1A 92.222 270 21 0 3206 3475 58287764 58287495 1.960000e-102 383.0
44 TraesCS2A01G557800 chr3B 92.453 265 19 1 3208 3472 349936670 349936933 9.100000e-101 377.0
45 TraesCS2A01G557800 chr3B 83.824 204 24 4 2479 2682 703924106 703924300 5.920000e-43 185.0
46 TraesCS2A01G557800 chr4A 94.444 216 9 1 722 937 604639722 604639510 2.590000e-86 329.0
47 TraesCS2A01G557800 chr4A 93.981 216 11 2 722 937 604639011 604638798 3.340000e-85 326.0
48 TraesCS2A01G557800 chr4A 94.419 215 7 5 724 937 604639937 604639727 3.340000e-85 326.0
49 TraesCS2A01G557800 chrUn 93.897 213 10 1 722 934 74669686 74669477 5.600000e-83 318.0
50 TraesCS2A01G557800 chr6B 93.427 213 11 3 722 934 9364946 9365155 2.600000e-81 313.0
51 TraesCS2A01G557800 chr3A 94.203 207 9 1 722 928 290712318 290712521 2.600000e-81 313.0
52 TraesCS2A01G557800 chr3A 92.958 213 13 2 722 934 627790304 627790094 3.370000e-80 309.0
53 TraesCS2A01G557800 chr5A 93.023 215 10 3 721 934 33132177 33131967 3.370000e-80 309.0
54 TraesCS2A01G557800 chr1B 77.941 204 42 3 997 1198 1200656 1200858 1.310000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G557800 chr2A 761277387 761280861 3474 False 6418.000000 6418 100.000000 1 3475 1 chr2A.!!$F3 3474
1 TraesCS2A01G557800 chr2A 52756571 52758115 1544 False 1171.000000 1171 80.818000 935 2457 1 chr2A.!!$F1 1522
2 TraesCS2A01G557800 chr2A 52571673 52573544 1871 True 747.000000 1205 82.354500 394 2456 2 chr2A.!!$R3 2062
3 TraesCS2A01G557800 chr2A 52538396 52540894 2498 True 730.000000 1232 78.912500 935 3006 2 chr2A.!!$R2 2071
4 TraesCS2A01G557800 chr2A 52425766 52428609 2843 True 479.400000 1496 89.598250 394 2682 4 chr2A.!!$R1 2288
5 TraesCS2A01G557800 chr2B 794029170 794032560 3390 True 1470.333333 2490 92.986667 1 3153 3 chr2B.!!$R3 3152
6 TraesCS2A01G557800 chr2B 79707622 79709494 1872 True 737.500000 1170 82.338500 394 2457 2 chr2B.!!$R2 2063
7 TraesCS2A01G557800 chr2B 79670281 79672253 1972 True 599.100000 1559 88.027333 394 2460 3 chr2B.!!$R1 2066
8 TraesCS2A01G557800 chr2D 51253202 51254752 1550 False 1190.000000 1190 81.028000 935 2466 1 chr2D.!!$F1 1531
9 TraesCS2A01G557800 chr2D 51158698 51160555 1857 True 733.500000 1182 82.014500 399 2457 2 chr2D.!!$R3 2058
10 TraesCS2A01G557800 chr2D 51137205 51137771 566 True 676.000000 676 88.713000 988 1537 1 chr2D.!!$R1 549
11 TraesCS2A01G557800 chr2D 51130697 51132097 1400 True 305.500000 350 79.676500 2060 3025 2 chr2D.!!$R2 965
12 TraesCS2A01G557800 chr7B 26652750 26654430 1680 True 634.000000 1123 82.360500 567 2457 2 chr7B.!!$R1 1890
13 TraesCS2A01G557800 chr7D 79358920 79360801 1881 True 598.000000 998 84.988500 1227 2682 2 chr7D.!!$R2 1455
14 TraesCS2A01G557800 chr7A 82153523 82155407 1884 True 594.500000 983 82.914500 1224 2682 2 chr7A.!!$R2 1458
15 TraesCS2A01G557800 chr4A 604638798 604639937 1139 True 327.000000 329 94.281333 722 937 3 chr4A.!!$R1 215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.716108 CATTGACTCGTTGTCTCCGC 59.284 55.0 11.24 0.0 45.54 5.54 F
739 1065 0.898326 TGGACGAGACTTGCCTGCTA 60.898 55.0 0.00 0.0 0.00 3.49 F
742 1068 0.900647 ACGAGACTTGCCTGCTACCT 60.901 55.0 0.00 0.0 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1352 2680 0.321210 CGTGTGGGTGGTCATTAGCA 60.321 55.0 0.00 0.0 0.0 3.49 R
2473 4296 0.390209 CGGTTATCGTCGGGTGGTTT 60.390 55.0 0.00 0.0 0.0 3.27 R
2697 4520 0.620121 CCCAAGGCCTTCCTCTCTCT 60.620 60.0 17.29 0.0 43.4 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 0.716108 CATTGACTCGTTGTCTCCGC 59.284 55.000 11.24 0.00 45.54 5.54
78 79 2.814919 CCGCCGTGGCCATAAAATATAA 59.185 45.455 9.72 0.00 37.98 0.98
96 97 7.474474 AATATAAGGTTATGGGAGGTGGAAA 57.526 36.000 0.00 0.00 0.00 3.13
154 155 5.860941 AGAGGCAGAAAATAGAATCGAGA 57.139 39.130 0.00 0.00 0.00 4.04
169 190 1.065345 TCGAGAAGATGGAGGAGACGT 60.065 52.381 0.00 0.00 0.00 4.34
305 326 8.994429 TTGCGTTAATGGATTGATTTACAAAT 57.006 26.923 0.00 0.00 42.03 2.32
324 345 6.917533 ACAAATTGATTCAGAGCTCGATTTT 58.082 32.000 8.37 0.10 34.64 1.82
325 346 7.373493 ACAAATTGATTCAGAGCTCGATTTTT 58.627 30.769 8.37 0.00 34.64 1.94
570 735 6.306987 AGATACATTACCCACATTCATTCCC 58.693 40.000 0.00 0.00 0.00 3.97
712 1038 2.295909 ACACATTAATTGTTGGCGCTGT 59.704 40.909 7.64 0.00 36.00 4.40
713 1039 3.504134 ACACATTAATTGTTGGCGCTGTA 59.496 39.130 7.64 0.00 36.00 2.74
714 1040 4.157656 ACACATTAATTGTTGGCGCTGTAT 59.842 37.500 7.64 0.00 36.00 2.29
715 1041 5.355630 ACACATTAATTGTTGGCGCTGTATA 59.644 36.000 7.64 0.00 36.00 1.47
716 1042 6.127869 ACACATTAATTGTTGGCGCTGTATAA 60.128 34.615 7.64 0.00 36.00 0.98
717 1043 6.749578 CACATTAATTGTTGGCGCTGTATAAA 59.250 34.615 7.64 0.00 36.00 1.40
718 1044 6.972328 ACATTAATTGTTGGCGCTGTATAAAG 59.028 34.615 7.64 0.00 33.74 1.85
719 1045 6.745159 TTAATTGTTGGCGCTGTATAAAGA 57.255 33.333 7.64 0.00 0.00 2.52
720 1046 5.835113 AATTGTTGGCGCTGTATAAAGAT 57.165 34.783 7.64 0.00 0.00 2.40
721 1047 4.614555 TTGTTGGCGCTGTATAAAGATG 57.385 40.909 7.64 0.00 0.00 2.90
722 1048 2.942376 TGTTGGCGCTGTATAAAGATGG 59.058 45.455 7.64 0.00 0.00 3.51
723 1049 3.202906 GTTGGCGCTGTATAAAGATGGA 58.797 45.455 7.64 0.00 0.00 3.41
724 1050 2.833794 TGGCGCTGTATAAAGATGGAC 58.166 47.619 7.64 0.00 0.00 4.02
725 1051 1.792949 GGCGCTGTATAAAGATGGACG 59.207 52.381 7.64 0.00 0.00 4.79
726 1052 2.545113 GGCGCTGTATAAAGATGGACGA 60.545 50.000 7.64 0.00 0.00 4.20
727 1053 2.726760 GCGCTGTATAAAGATGGACGAG 59.273 50.000 0.00 0.00 0.00 4.18
739 1065 0.898326 TGGACGAGACTTGCCTGCTA 60.898 55.000 0.00 0.00 0.00 3.49
742 1068 0.900647 ACGAGACTTGCCTGCTACCT 60.901 55.000 0.00 0.00 0.00 3.08
759 1085 3.295304 CTCGTCGTGTGCCCATCCA 62.295 63.158 0.00 0.00 0.00 3.41
905 2157 3.083997 GGGAGCACGGATGGGAGT 61.084 66.667 0.00 0.00 0.00 3.85
909 2161 2.106332 GCACGGATGGGAGTACGG 59.894 66.667 0.00 0.00 0.00 4.02
910 2162 2.812499 CACGGATGGGAGTACGGG 59.188 66.667 0.00 0.00 0.00 5.28
911 2163 2.443390 ACGGATGGGAGTACGGGG 60.443 66.667 0.00 0.00 0.00 5.73
912 2164 2.123597 CGGATGGGAGTACGGGGA 60.124 66.667 0.00 0.00 0.00 4.81
913 2165 2.201022 CGGATGGGAGTACGGGGAG 61.201 68.421 0.00 0.00 0.00 4.30
914 2166 1.837499 GGATGGGAGTACGGGGAGG 60.837 68.421 0.00 0.00 0.00 4.30
915 2167 1.837499 GATGGGAGTACGGGGAGGG 60.837 68.421 0.00 0.00 0.00 4.30
916 2168 2.308118 GATGGGAGTACGGGGAGGGA 62.308 65.000 0.00 0.00 0.00 4.20
917 2169 2.123382 GGGAGTACGGGGAGGGAG 60.123 72.222 0.00 0.00 0.00 4.30
918 2170 2.838693 GGAGTACGGGGAGGGAGC 60.839 72.222 0.00 0.00 0.00 4.70
919 2171 2.043248 GAGTACGGGGAGGGAGCA 60.043 66.667 0.00 0.00 0.00 4.26
920 2172 2.042843 AGTACGGGGAGGGAGCAG 60.043 66.667 0.00 0.00 0.00 4.24
921 2173 3.155167 GTACGGGGAGGGAGCAGG 61.155 72.222 0.00 0.00 0.00 4.85
922 2174 3.680196 TACGGGGAGGGAGCAGGT 61.680 66.667 0.00 0.00 0.00 4.00
923 2175 2.318966 TACGGGGAGGGAGCAGGTA 61.319 63.158 0.00 0.00 0.00 3.08
924 2176 1.877672 TACGGGGAGGGAGCAGGTAA 61.878 60.000 0.00 0.00 0.00 2.85
925 2177 2.435693 CGGGGAGGGAGCAGGTAAG 61.436 68.421 0.00 0.00 0.00 2.34
926 2178 2.747443 GGGGAGGGAGCAGGTAAGC 61.747 68.421 0.00 0.00 0.00 3.09
927 2179 2.747443 GGGAGGGAGCAGGTAAGCC 61.747 68.421 0.00 0.00 34.23 4.35
928 2180 2.501610 GAGGGAGCAGGTAAGCCG 59.498 66.667 0.00 0.00 40.50 5.52
929 2181 3.083997 AGGGAGCAGGTAAGCCGG 61.084 66.667 0.00 0.00 40.50 6.13
930 2182 3.081409 GGGAGCAGGTAAGCCGGA 61.081 66.667 5.05 0.00 40.50 5.14
931 2183 2.444256 GGGAGCAGGTAAGCCGGAT 61.444 63.158 5.05 0.00 40.50 4.18
932 2184 1.069935 GGAGCAGGTAAGCCGGATC 59.930 63.158 5.05 0.00 43.13 3.36
933 2185 1.069935 GAGCAGGTAAGCCGGATCC 59.930 63.158 5.05 0.00 39.02 3.36
1314 2642 2.110213 GACACGGTGGCCAAGACA 59.890 61.111 7.24 0.00 0.00 3.41
1982 3333 2.742372 GTTGCTCATGGTCGCCGT 60.742 61.111 0.00 0.00 0.00 5.68
2121 3473 2.229062 TCTGAGGAACAAGAGTACTGCG 59.771 50.000 0.00 0.00 0.00 5.18
2140 3492 2.673833 CGTTTACTCTGAGGGTGACAC 58.326 52.381 9.85 0.00 0.00 3.67
2145 3497 2.797786 ACTCTGAGGGTGACACTAGTC 58.202 52.381 9.85 0.89 45.19 2.59
2198 3550 5.882000 CCATATGTCCAATCTTCAACTGTCA 59.118 40.000 1.24 0.00 0.00 3.58
2461 3822 2.485122 CCGCGGTCCAAGCAAATC 59.515 61.111 19.50 0.00 34.19 2.17
2462 3823 2.331893 CCGCGGTCCAAGCAAATCA 61.332 57.895 19.50 0.00 34.19 2.57
2463 3824 1.656818 CCGCGGTCCAAGCAAATCAT 61.657 55.000 19.50 0.00 34.19 2.45
2477 4300 3.429085 CAAATCATCGTGCTGCTAAACC 58.571 45.455 0.00 0.00 0.00 3.27
2685 4508 4.643387 GTGGGTGAGCGGCCTGTT 62.643 66.667 0.00 0.00 0.00 3.16
2686 4509 2.925706 TGGGTGAGCGGCCTGTTA 60.926 61.111 0.00 0.00 0.00 2.41
2687 4510 2.349755 GGGTGAGCGGCCTGTTAA 59.650 61.111 0.00 0.00 0.00 2.01
2688 4511 1.302993 GGGTGAGCGGCCTGTTAAA 60.303 57.895 0.00 0.00 0.00 1.52
2689 4512 0.891904 GGGTGAGCGGCCTGTTAAAA 60.892 55.000 0.00 0.00 0.00 1.52
2691 4514 1.519408 GTGAGCGGCCTGTTAAAAGA 58.481 50.000 0.00 0.00 0.00 2.52
2692 4515 1.464997 GTGAGCGGCCTGTTAAAAGAG 59.535 52.381 0.00 0.00 0.00 2.85
2693 4516 1.346395 TGAGCGGCCTGTTAAAAGAGA 59.654 47.619 0.00 0.00 0.00 3.10
2694 4517 2.003301 GAGCGGCCTGTTAAAAGAGAG 58.997 52.381 0.00 0.00 0.00 3.20
2695 4518 1.623811 AGCGGCCTGTTAAAAGAGAGA 59.376 47.619 0.00 0.00 0.00 3.10
2696 4519 2.003301 GCGGCCTGTTAAAAGAGAGAG 58.997 52.381 0.00 0.00 0.00 3.20
2697 4520 2.353803 GCGGCCTGTTAAAAGAGAGAGA 60.354 50.000 0.00 0.00 0.00 3.10
2698 4521 3.516615 CGGCCTGTTAAAAGAGAGAGAG 58.483 50.000 0.00 0.00 0.00 3.20
2704 4529 6.404734 GCCTGTTAAAAGAGAGAGAGAGAGAG 60.405 46.154 0.00 0.00 0.00 3.20
2771 4623 0.179081 GGTGGGTATCGGAGAAGCAC 60.179 60.000 0.00 0.00 43.58 4.40
2805 4657 1.349234 CATCGTCGCTGTCATCACAA 58.651 50.000 0.00 0.00 29.82 3.33
2809 4661 0.164647 GTCGCTGTCATCACAAGTGC 59.835 55.000 0.00 0.00 29.82 4.40
2810 4662 0.249826 TCGCTGTCATCACAAGTGCA 60.250 50.000 0.00 0.00 29.82 4.57
2811 4663 0.587768 CGCTGTCATCACAAGTGCAA 59.412 50.000 0.00 0.00 29.82 4.08
2842 4694 3.730761 GCCATCGCCATCGCCATC 61.731 66.667 0.00 0.00 35.26 3.51
2843 4695 2.281002 CCATCGCCATCGCCATCA 60.281 61.111 0.00 0.00 35.26 3.07
2844 4696 2.610694 CCATCGCCATCGCCATCAC 61.611 63.158 0.00 0.00 35.26 3.06
2845 4697 2.281070 ATCGCCATCGCCATCACC 60.281 61.111 0.00 0.00 35.26 4.02
2846 4698 3.832237 ATCGCCATCGCCATCACCC 62.832 63.158 0.00 0.00 35.26 4.61
2873 4725 0.168788 CACCATGAACCATGTGCGTC 59.831 55.000 0.00 0.00 39.94 5.19
2890 4757 3.113322 GCGTCTTGTTTTTCTTTGTCCC 58.887 45.455 0.00 0.00 0.00 4.46
2911 4792 5.300792 TCCCTGTTCACTTCATTTTTGGTAC 59.699 40.000 0.00 0.00 0.00 3.34
2912 4793 5.212194 CCTGTTCACTTCATTTTTGGTACG 58.788 41.667 0.00 0.00 0.00 3.67
2913 4794 5.220970 CCTGTTCACTTCATTTTTGGTACGT 60.221 40.000 0.00 0.00 0.00 3.57
2914 4795 6.017770 CCTGTTCACTTCATTTTTGGTACGTA 60.018 38.462 0.00 0.00 0.00 3.57
2980 4861 5.971202 ACAGCAACTTTTTAACGTCTCATTG 59.029 36.000 0.00 0.00 0.00 2.82
3022 4903 3.342377 TCAGGTTATGCGATTCCAACA 57.658 42.857 0.00 0.00 0.00 3.33
3032 4913 5.079689 TGCGATTCCAACAGATTACTACA 57.920 39.130 0.00 0.00 0.00 2.74
3033 4914 5.109210 TGCGATTCCAACAGATTACTACAG 58.891 41.667 0.00 0.00 0.00 2.74
3034 4915 5.105513 TGCGATTCCAACAGATTACTACAGA 60.106 40.000 0.00 0.00 0.00 3.41
3035 4916 5.460419 GCGATTCCAACAGATTACTACAGAG 59.540 44.000 0.00 0.00 0.00 3.35
3036 4917 5.460419 CGATTCCAACAGATTACTACAGAGC 59.540 44.000 0.00 0.00 0.00 4.09
3037 4918 6.552445 ATTCCAACAGATTACTACAGAGCT 57.448 37.500 0.00 0.00 0.00 4.09
3038 4919 7.468768 CGATTCCAACAGATTACTACAGAGCTA 60.469 40.741 0.00 0.00 0.00 3.32
3039 4920 6.452494 TCCAACAGATTACTACAGAGCTAC 57.548 41.667 0.00 0.00 0.00 3.58
3040 4921 5.360144 TCCAACAGATTACTACAGAGCTACC 59.640 44.000 0.00 0.00 0.00 3.18
3041 4922 5.361285 CCAACAGATTACTACAGAGCTACCT 59.639 44.000 0.00 0.00 0.00 3.08
3042 4923 6.269315 CAACAGATTACTACAGAGCTACCTG 58.731 44.000 0.99 0.99 39.93 4.00
3043 4924 4.339814 ACAGATTACTACAGAGCTACCTGC 59.660 45.833 2.42 0.00 43.29 4.85
3046 4927 4.920640 TTACTACAGAGCTACCTGCATC 57.079 45.455 2.42 0.00 45.94 3.91
3047 4928 2.035632 ACTACAGAGCTACCTGCATCC 58.964 52.381 2.42 0.00 45.94 3.51
3048 4929 1.342819 CTACAGAGCTACCTGCATCCC 59.657 57.143 2.42 0.00 45.94 3.85
3049 4930 0.618680 ACAGAGCTACCTGCATCCCA 60.619 55.000 2.42 0.00 45.94 4.37
3153 5039 1.682005 GCTGGTGGGCTGCCAATAA 60.682 57.895 22.05 0.37 35.32 1.40
3154 5040 1.044790 GCTGGTGGGCTGCCAATAAT 61.045 55.000 22.05 0.00 35.32 1.28
3155 5041 0.748450 CTGGTGGGCTGCCAATAATG 59.252 55.000 22.05 1.74 35.32 1.90
3156 5042 0.040942 TGGTGGGCTGCCAATAATGT 59.959 50.000 22.05 0.00 32.29 2.71
3157 5043 0.461135 GGTGGGCTGCCAATAATGTG 59.539 55.000 22.05 0.00 0.00 3.21
3158 5044 1.185315 GTGGGCTGCCAATAATGTGT 58.815 50.000 22.05 0.00 0.00 3.72
3159 5045 1.134946 GTGGGCTGCCAATAATGTGTC 59.865 52.381 22.05 0.00 0.00 3.67
3160 5046 0.746659 GGGCTGCCAATAATGTGTCC 59.253 55.000 22.05 0.00 0.00 4.02
3161 5047 1.473258 GGCTGCCAATAATGTGTCCA 58.527 50.000 15.17 0.00 0.00 4.02
3162 5048 1.824230 GGCTGCCAATAATGTGTCCAA 59.176 47.619 15.17 0.00 0.00 3.53
3163 5049 2.233431 GGCTGCCAATAATGTGTCCAAA 59.767 45.455 15.17 0.00 0.00 3.28
3164 5050 3.118665 GGCTGCCAATAATGTGTCCAAAT 60.119 43.478 15.17 0.00 0.00 2.32
3165 5051 4.099266 GGCTGCCAATAATGTGTCCAAATA 59.901 41.667 15.17 0.00 0.00 1.40
3166 5052 5.043248 GCTGCCAATAATGTGTCCAAATAC 58.957 41.667 0.00 0.00 0.00 1.89
3167 5053 5.163519 GCTGCCAATAATGTGTCCAAATACT 60.164 40.000 0.00 0.00 0.00 2.12
3168 5054 6.627953 GCTGCCAATAATGTGTCCAAATACTT 60.628 38.462 0.00 0.00 0.00 2.24
3169 5055 6.629128 TGCCAATAATGTGTCCAAATACTTG 58.371 36.000 0.00 0.00 0.00 3.16
3177 5063 2.489040 CCAAATACTTGGTCGCCCC 58.511 57.895 0.00 0.00 46.25 5.80
3178 5064 0.322997 CCAAATACTTGGTCGCCCCA 60.323 55.000 0.00 0.00 46.25 4.96
3185 5071 2.519780 TGGTCGCCCCAAAACCAC 60.520 61.111 0.00 0.00 41.50 4.16
3186 5072 2.519780 GGTCGCCCCAAAACCACA 60.520 61.111 0.00 0.00 33.11 4.17
3187 5073 2.725641 GTCGCCCCAAAACCACAC 59.274 61.111 0.00 0.00 0.00 3.82
3188 5074 2.519780 TCGCCCCAAAACCACACC 60.520 61.111 0.00 0.00 0.00 4.16
3189 5075 3.611674 CGCCCCAAAACCACACCC 61.612 66.667 0.00 0.00 0.00 4.61
3190 5076 3.611674 GCCCCAAAACCACACCCG 61.612 66.667 0.00 0.00 0.00 5.28
3191 5077 2.196229 CCCCAAAACCACACCCGA 59.804 61.111 0.00 0.00 0.00 5.14
3192 5078 2.197605 CCCCAAAACCACACCCGAC 61.198 63.158 0.00 0.00 0.00 4.79
3193 5079 2.197605 CCCAAAACCACACCCGACC 61.198 63.158 0.00 0.00 0.00 4.79
3194 5080 2.197605 CCAAAACCACACCCGACCC 61.198 63.158 0.00 0.00 0.00 4.46
3195 5081 2.196502 AAAACCACACCCGACCCC 59.803 61.111 0.00 0.00 0.00 4.95
3196 5082 3.440162 AAAACCACACCCGACCCCC 62.440 63.158 0.00 0.00 0.00 5.40
3199 5085 3.892162 CCACACCCGACCCCCAAA 61.892 66.667 0.00 0.00 0.00 3.28
3200 5086 2.596338 CACACCCGACCCCCAAAC 60.596 66.667 0.00 0.00 0.00 2.93
3201 5087 3.893399 ACACCCGACCCCCAAACC 61.893 66.667 0.00 0.00 0.00 3.27
3212 5098 4.636435 CCAAACCGCACCCGACCT 62.636 66.667 0.00 0.00 36.29 3.85
3213 5099 3.047877 CAAACCGCACCCGACCTC 61.048 66.667 0.00 0.00 36.29 3.85
3214 5100 3.239253 AAACCGCACCCGACCTCT 61.239 61.111 0.00 0.00 36.29 3.69
3215 5101 3.236003 AAACCGCACCCGACCTCTC 62.236 63.158 0.00 0.00 36.29 3.20
3216 5102 4.680537 ACCGCACCCGACCTCTCT 62.681 66.667 0.00 0.00 36.29 3.10
3217 5103 3.382832 CCGCACCCGACCTCTCTT 61.383 66.667 0.00 0.00 36.29 2.85
3218 5104 2.182030 CGCACCCGACCTCTCTTC 59.818 66.667 0.00 0.00 36.29 2.87
3219 5105 2.579738 GCACCCGACCTCTCTTCC 59.420 66.667 0.00 0.00 0.00 3.46
3220 5106 3.020237 GCACCCGACCTCTCTTCCC 62.020 68.421 0.00 0.00 0.00 3.97
3221 5107 2.039137 ACCCGACCTCTCTTCCCC 59.961 66.667 0.00 0.00 0.00 4.81
3222 5108 3.148279 CCCGACCTCTCTTCCCCG 61.148 72.222 0.00 0.00 0.00 5.73
3223 5109 2.044252 CCGACCTCTCTTCCCCGA 60.044 66.667 0.00 0.00 0.00 5.14
3224 5110 2.122167 CCGACCTCTCTTCCCCGAG 61.122 68.421 0.00 0.00 0.00 4.63
3227 5113 3.532155 CCTCTCTTCCCCGAGGCG 61.532 72.222 0.00 0.00 40.27 5.52
3266 5152 2.998949 GGAGTCCCCATCCACACC 59.001 66.667 0.00 0.00 36.79 4.16
3267 5153 2.584608 GAGTCCCCATCCACACCG 59.415 66.667 0.00 0.00 0.00 4.94
3268 5154 3.682292 GAGTCCCCATCCACACCGC 62.682 68.421 0.00 0.00 0.00 5.68
3269 5155 4.796495 GTCCCCATCCACACCGCC 62.796 72.222 0.00 0.00 0.00 6.13
3272 5158 4.489771 CCCATCCACACCGCCCTC 62.490 72.222 0.00 0.00 0.00 4.30
3273 5159 3.716195 CCATCCACACCGCCCTCA 61.716 66.667 0.00 0.00 0.00 3.86
3274 5160 2.124983 CATCCACACCGCCCTCAG 60.125 66.667 0.00 0.00 0.00 3.35
3275 5161 4.101448 ATCCACACCGCCCTCAGC 62.101 66.667 0.00 0.00 38.52 4.26
3285 5171 4.767892 CCCTCAGCCCTCCCCCTT 62.768 72.222 0.00 0.00 0.00 3.95
3286 5172 3.093172 CCTCAGCCCTCCCCCTTC 61.093 72.222 0.00 0.00 0.00 3.46
3287 5173 2.285668 CTCAGCCCTCCCCCTTCA 60.286 66.667 0.00 0.00 0.00 3.02
3288 5174 1.695597 CTCAGCCCTCCCCCTTCAT 60.696 63.158 0.00 0.00 0.00 2.57
3289 5175 1.694169 TCAGCCCTCCCCCTTCATC 60.694 63.158 0.00 0.00 0.00 2.92
3290 5176 2.770048 AGCCCTCCCCCTTCATCG 60.770 66.667 0.00 0.00 0.00 3.84
3291 5177 3.090532 GCCCTCCCCCTTCATCGT 61.091 66.667 0.00 0.00 0.00 3.73
3292 5178 3.108288 GCCCTCCCCCTTCATCGTC 62.108 68.421 0.00 0.00 0.00 4.20
3293 5179 1.383248 CCCTCCCCCTTCATCGTCT 60.383 63.158 0.00 0.00 0.00 4.18
3294 5180 1.403687 CCCTCCCCCTTCATCGTCTC 61.404 65.000 0.00 0.00 0.00 3.36
3295 5181 1.403687 CCTCCCCCTTCATCGTCTCC 61.404 65.000 0.00 0.00 0.00 3.71
3296 5182 1.382695 TCCCCCTTCATCGTCTCCC 60.383 63.158 0.00 0.00 0.00 4.30
3297 5183 1.689233 CCCCCTTCATCGTCTCCCA 60.689 63.158 0.00 0.00 0.00 4.37
3298 5184 1.522569 CCCCTTCATCGTCTCCCAC 59.477 63.158 0.00 0.00 0.00 4.61
3299 5185 0.978146 CCCCTTCATCGTCTCCCACT 60.978 60.000 0.00 0.00 0.00 4.00
3300 5186 1.688311 CCCCTTCATCGTCTCCCACTA 60.688 57.143 0.00 0.00 0.00 2.74
3301 5187 2.320781 CCCTTCATCGTCTCCCACTAT 58.679 52.381 0.00 0.00 0.00 2.12
3302 5188 2.297597 CCCTTCATCGTCTCCCACTATC 59.702 54.545 0.00 0.00 0.00 2.08
3303 5189 2.030717 CCTTCATCGTCTCCCACTATCG 60.031 54.545 0.00 0.00 0.00 2.92
3304 5190 0.952280 TCATCGTCTCCCACTATCGC 59.048 55.000 0.00 0.00 0.00 4.58
3305 5191 0.039074 CATCGTCTCCCACTATCGCC 60.039 60.000 0.00 0.00 0.00 5.54
3306 5192 1.516365 ATCGTCTCCCACTATCGCCG 61.516 60.000 0.00 0.00 0.00 6.46
3307 5193 2.027751 GTCTCCCACTATCGCCGC 59.972 66.667 0.00 0.00 0.00 6.53
3308 5194 3.224324 TCTCCCACTATCGCCGCC 61.224 66.667 0.00 0.00 0.00 6.13
3309 5195 3.227276 CTCCCACTATCGCCGCCT 61.227 66.667 0.00 0.00 0.00 5.52
3310 5196 2.762459 TCCCACTATCGCCGCCTT 60.762 61.111 0.00 0.00 0.00 4.35
3311 5197 2.280186 CCCACTATCGCCGCCTTC 60.280 66.667 0.00 0.00 0.00 3.46
3312 5198 2.658593 CCACTATCGCCGCCTTCG 60.659 66.667 0.00 0.00 0.00 3.79
3313 5199 3.330853 CACTATCGCCGCCTTCGC 61.331 66.667 0.00 0.00 0.00 4.70
3314 5200 3.528370 ACTATCGCCGCCTTCGCT 61.528 61.111 0.00 0.00 0.00 4.93
3315 5201 3.032609 CTATCGCCGCCTTCGCTG 61.033 66.667 0.00 0.00 0.00 5.18
3316 5202 3.484742 CTATCGCCGCCTTCGCTGA 62.485 63.158 0.00 0.00 0.00 4.26
3317 5203 3.484742 TATCGCCGCCTTCGCTGAG 62.485 63.158 0.00 0.00 0.00 3.35
3347 5233 2.046892 CGAAGCCCCTGTGGTGAG 60.047 66.667 0.00 0.00 36.04 3.51
3348 5234 2.352805 GAAGCCCCTGTGGTGAGG 59.647 66.667 0.00 0.00 36.04 3.86
3349 5235 3.927481 GAAGCCCCTGTGGTGAGGC 62.927 68.421 0.00 0.00 46.13 4.70
3381 5267 4.753662 AGTCCTCGGCCAGCGGTA 62.754 66.667 2.24 0.00 0.00 4.02
3382 5268 3.766691 GTCCTCGGCCAGCGGTAA 61.767 66.667 2.24 0.00 0.00 2.85
3383 5269 3.766691 TCCTCGGCCAGCGGTAAC 61.767 66.667 2.24 0.00 0.00 2.50
3410 5296 4.899239 CAGCGGCGTCCATCTCCC 62.899 72.222 9.37 0.00 0.00 4.30
3412 5298 4.593864 GCGGCGTCCATCTCCCTC 62.594 72.222 9.37 0.00 0.00 4.30
3413 5299 3.917760 CGGCGTCCATCTCCCTCC 61.918 72.222 0.00 0.00 0.00 4.30
3414 5300 3.551407 GGCGTCCATCTCCCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
3415 5301 3.551407 GCGTCCATCTCCCTCCCC 61.551 72.222 0.00 0.00 0.00 4.81
3416 5302 2.844839 CGTCCATCTCCCTCCCCC 60.845 72.222 0.00 0.00 0.00 5.40
3417 5303 2.706071 GTCCATCTCCCTCCCCCT 59.294 66.667 0.00 0.00 0.00 4.79
3418 5304 1.460497 GTCCATCTCCCTCCCCCTC 60.460 68.421 0.00 0.00 0.00 4.30
3419 5305 2.122189 CCATCTCCCTCCCCCTCC 60.122 72.222 0.00 0.00 0.00 4.30
3420 5306 2.705410 CATCTCCCTCCCCCTCCA 59.295 66.667 0.00 0.00 0.00 3.86
3421 5307 1.004758 CATCTCCCTCCCCCTCCAA 59.995 63.158 0.00 0.00 0.00 3.53
3422 5308 0.624500 CATCTCCCTCCCCCTCCAAA 60.625 60.000 0.00 0.00 0.00 3.28
3423 5309 0.327964 ATCTCCCTCCCCCTCCAAAG 60.328 60.000 0.00 0.00 0.00 2.77
3424 5310 2.003548 CTCCCTCCCCCTCCAAAGG 61.004 68.421 0.00 0.00 42.95 3.11
3425 5311 3.744155 CCCTCCCCCTCCAAAGGC 61.744 72.222 0.00 0.00 41.85 4.35
3426 5312 2.941025 CCTCCCCCTCCAAAGGCA 60.941 66.667 0.00 0.00 41.85 4.75
3427 5313 2.679716 CTCCCCCTCCAAAGGCAG 59.320 66.667 0.00 0.00 41.85 4.85
3428 5314 2.121506 TCCCCCTCCAAAGGCAGT 60.122 61.111 0.00 0.00 41.85 4.40
3429 5315 2.036256 CCCCCTCCAAAGGCAGTG 59.964 66.667 0.00 0.00 41.85 3.66
3430 5316 2.677875 CCCCTCCAAAGGCAGTGC 60.678 66.667 6.55 6.55 41.85 4.40
3431 5317 3.058160 CCCTCCAAAGGCAGTGCG 61.058 66.667 9.45 0.00 41.85 5.34
3432 5318 3.741476 CCTCCAAAGGCAGTGCGC 61.741 66.667 9.45 0.00 35.37 6.09
3433 5319 2.979676 CTCCAAAGGCAGTGCGCA 60.980 61.111 5.66 5.66 45.17 6.09
3434 5320 2.974489 CTCCAAAGGCAGTGCGCAG 61.974 63.158 12.22 0.00 45.17 5.18
3435 5321 3.289834 CCAAAGGCAGTGCGCAGT 61.290 61.111 12.22 12.72 45.17 4.40
3436 5322 2.050714 CAAAGGCAGTGCGCAGTG 60.051 61.111 35.42 35.42 45.17 3.66
3437 5323 3.289834 AAAGGCAGTGCGCAGTGG 61.290 61.111 38.35 23.82 45.17 4.00
3441 5327 4.332637 GCAGTGCGCAGTGGGTTG 62.333 66.667 38.35 19.27 41.79 3.77
3442 5328 3.663176 CAGTGCGCAGTGGGTTGG 61.663 66.667 32.97 10.31 0.00 3.77
3443 5329 4.189580 AGTGCGCAGTGGGTTGGT 62.190 61.111 18.84 0.00 0.00 3.67
3444 5330 3.964875 GTGCGCAGTGGGTTGGTG 61.965 66.667 12.22 0.00 0.00 4.17
3447 5333 3.286751 CGCAGTGGGTTGGTGGTG 61.287 66.667 0.00 0.00 0.00 4.17
3448 5334 2.912025 GCAGTGGGTTGGTGGTGG 60.912 66.667 0.00 0.00 0.00 4.61
3449 5335 2.912025 CAGTGGGTTGGTGGTGGC 60.912 66.667 0.00 0.00 0.00 5.01
3450 5336 4.218686 AGTGGGTTGGTGGTGGCC 62.219 66.667 0.00 0.00 0.00 5.36
3451 5337 4.531426 GTGGGTTGGTGGTGGCCA 62.531 66.667 0.00 0.00 36.62 5.36
3452 5338 4.217210 TGGGTTGGTGGTGGCCAG 62.217 66.667 5.11 0.00 40.01 4.85
3453 5339 4.994756 GGGTTGGTGGTGGCCAGG 62.995 72.222 5.11 0.00 40.01 4.45
3454 5340 3.897122 GGTTGGTGGTGGCCAGGA 61.897 66.667 5.11 0.00 40.01 3.86
3455 5341 2.282462 GTTGGTGGTGGCCAGGAG 60.282 66.667 5.11 0.00 40.01 3.69
3456 5342 2.449518 TTGGTGGTGGCCAGGAGA 60.450 61.111 5.11 0.00 40.01 3.71
3457 5343 1.852157 TTGGTGGTGGCCAGGAGAT 60.852 57.895 5.11 0.00 40.01 2.75
3458 5344 1.852157 TTGGTGGTGGCCAGGAGATC 61.852 60.000 5.11 0.00 40.01 2.75
3459 5345 1.997874 GGTGGTGGCCAGGAGATCT 60.998 63.158 5.11 0.00 32.34 2.75
3460 5346 1.566298 GGTGGTGGCCAGGAGATCTT 61.566 60.000 5.11 0.00 32.34 2.40
3461 5347 0.107459 GTGGTGGCCAGGAGATCTTC 60.107 60.000 5.11 0.00 32.34 2.87
3462 5348 1.144936 GGTGGCCAGGAGATCTTCG 59.855 63.158 5.11 0.00 0.00 3.79
3463 5349 1.144936 GTGGCCAGGAGATCTTCGG 59.855 63.158 5.11 1.90 0.00 4.30
3464 5350 2.110006 GGCCAGGAGATCTTCGGC 59.890 66.667 21.79 21.79 42.21 5.54
3465 5351 2.279784 GCCAGGAGATCTTCGGCG 60.280 66.667 17.45 0.00 32.14 6.46
3466 5352 2.419198 CCAGGAGATCTTCGGCGG 59.581 66.667 7.21 0.00 0.00 6.13
3467 5353 2.279784 CAGGAGATCTTCGGCGGC 60.280 66.667 7.21 0.00 0.00 6.53
3468 5354 3.541713 AGGAGATCTTCGGCGGCC 61.542 66.667 9.54 9.54 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 7.362574 CCATAACCTTATATTTTATGGCCACGG 60.363 40.741 8.16 0.00 43.19 4.94
78 79 2.290705 CGTTTTCCACCTCCCATAACCT 60.291 50.000 0.00 0.00 0.00 3.50
96 97 7.600752 TGTTTTTCTTCTCAAATCCAAAACGTT 59.399 29.630 0.00 0.00 36.07 3.99
154 155 2.414994 TCGTACGTCTCCTCCATCTT 57.585 50.000 16.05 0.00 0.00 2.40
169 190 3.215244 GTTTCGTAGTCGTTCGTTCGTA 58.785 45.455 2.67 0.00 38.33 3.43
186 207 1.940613 GCGGTGATGATGGTAGGTTTC 59.059 52.381 0.00 0.00 0.00 2.78
570 735 4.578871 TGATAAGATTATGTGGGATGGCG 58.421 43.478 0.00 0.00 0.00 5.69
712 1038 4.649674 AGGCAAGTCTCGTCCATCTTTATA 59.350 41.667 0.00 0.00 0.00 0.98
713 1039 3.452627 AGGCAAGTCTCGTCCATCTTTAT 59.547 43.478 0.00 0.00 0.00 1.40
714 1040 2.832129 AGGCAAGTCTCGTCCATCTTTA 59.168 45.455 0.00 0.00 0.00 1.85
715 1041 1.625818 AGGCAAGTCTCGTCCATCTTT 59.374 47.619 0.00 0.00 0.00 2.52
716 1042 1.066573 CAGGCAAGTCTCGTCCATCTT 60.067 52.381 0.00 0.00 0.00 2.40
717 1043 0.534412 CAGGCAAGTCTCGTCCATCT 59.466 55.000 0.00 0.00 0.00 2.90
718 1044 1.086634 GCAGGCAAGTCTCGTCCATC 61.087 60.000 0.00 0.00 0.00 3.51
719 1045 1.078848 GCAGGCAAGTCTCGTCCAT 60.079 57.895 0.00 0.00 0.00 3.41
720 1046 0.898326 TAGCAGGCAAGTCTCGTCCA 60.898 55.000 0.00 0.00 0.00 4.02
721 1047 0.458716 GTAGCAGGCAAGTCTCGTCC 60.459 60.000 0.00 0.00 0.00 4.79
722 1048 0.458716 GGTAGCAGGCAAGTCTCGTC 60.459 60.000 0.00 0.00 0.00 4.20
723 1049 0.900647 AGGTAGCAGGCAAGTCTCGT 60.901 55.000 0.00 0.00 0.00 4.18
724 1050 0.179124 GAGGTAGCAGGCAAGTCTCG 60.179 60.000 0.00 0.00 0.00 4.04
725 1051 0.179124 CGAGGTAGCAGGCAAGTCTC 60.179 60.000 0.00 0.00 0.00 3.36
726 1052 0.900647 ACGAGGTAGCAGGCAAGTCT 60.901 55.000 0.00 0.00 0.00 3.24
727 1053 0.458716 GACGAGGTAGCAGGCAAGTC 60.459 60.000 0.00 0.00 0.00 3.01
739 1065 3.296709 GATGGGCACACGACGAGGT 62.297 63.158 0.00 0.00 0.00 3.85
742 1068 2.655073 ATGGATGGGCACACGACGA 61.655 57.895 0.00 0.00 0.00 4.20
905 2157 1.877672 TTACCTGCTCCCTCCCCGTA 61.878 60.000 0.00 0.00 0.00 4.02
909 2161 2.747443 GGCTTACCTGCTCCCTCCC 61.747 68.421 0.00 0.00 0.00 4.30
910 2162 2.911928 GGCTTACCTGCTCCCTCC 59.088 66.667 0.00 0.00 0.00 4.30
911 2163 2.501610 CGGCTTACCTGCTCCCTC 59.498 66.667 0.00 0.00 0.00 4.30
912 2164 2.898472 ATCCGGCTTACCTGCTCCCT 62.898 60.000 0.00 0.00 0.00 4.20
913 2165 2.384653 GATCCGGCTTACCTGCTCCC 62.385 65.000 0.00 0.00 0.00 4.30
914 2166 1.069935 GATCCGGCTTACCTGCTCC 59.930 63.158 0.00 0.00 0.00 4.70
915 2167 1.069935 GGATCCGGCTTACCTGCTC 59.930 63.158 0.00 0.00 0.00 4.26
916 2168 0.105658 TAGGATCCGGCTTACCTGCT 60.106 55.000 5.98 2.36 34.42 4.24
917 2169 0.977395 ATAGGATCCGGCTTACCTGC 59.023 55.000 5.98 0.00 34.42 4.85
918 2170 4.527038 TCTTTATAGGATCCGGCTTACCTG 59.473 45.833 5.98 0.00 34.42 4.00
919 2171 4.748701 TCTTTATAGGATCCGGCTTACCT 58.251 43.478 5.98 5.16 36.65 3.08
920 2172 5.678955 ATCTTTATAGGATCCGGCTTACC 57.321 43.478 5.98 0.00 0.00 2.85
921 2173 5.351740 GCAATCTTTATAGGATCCGGCTTAC 59.648 44.000 5.98 0.00 0.00 2.34
922 2174 5.488341 GCAATCTTTATAGGATCCGGCTTA 58.512 41.667 5.98 0.00 0.00 3.09
923 2175 4.327680 GCAATCTTTATAGGATCCGGCTT 58.672 43.478 5.98 0.00 0.00 4.35
924 2176 3.307762 GGCAATCTTTATAGGATCCGGCT 60.308 47.826 5.98 0.00 0.00 5.52
925 2177 3.010420 GGCAATCTTTATAGGATCCGGC 58.990 50.000 5.98 0.00 0.00 6.13
926 2178 4.256920 CAGGCAATCTTTATAGGATCCGG 58.743 47.826 5.98 0.00 0.00 5.14
927 2179 4.256920 CCAGGCAATCTTTATAGGATCCG 58.743 47.826 5.98 0.00 0.00 4.18
928 2180 5.006386 CACCAGGCAATCTTTATAGGATCC 58.994 45.833 2.48 2.48 0.00 3.36
929 2181 5.869579 TCACCAGGCAATCTTTATAGGATC 58.130 41.667 0.00 0.00 0.00 3.36
930 2182 5.912149 TCACCAGGCAATCTTTATAGGAT 57.088 39.130 0.00 0.00 0.00 3.24
931 2183 5.912149 ATCACCAGGCAATCTTTATAGGA 57.088 39.130 0.00 0.00 0.00 2.94
932 2184 6.016777 GTCAATCACCAGGCAATCTTTATAGG 60.017 42.308 0.00 0.00 0.00 2.57
933 2185 6.016777 GGTCAATCACCAGGCAATCTTTATAG 60.017 42.308 0.00 0.00 45.98 1.31
1101 2417 4.522789 GCAGAGGGTTTTCTGGTATTTTGA 59.477 41.667 5.30 0.00 43.80 2.69
1352 2680 0.321210 CGTGTGGGTGGTCATTAGCA 60.321 55.000 0.00 0.00 0.00 3.49
1982 3333 2.721167 CTCCGGTCAATGGAGCCGA 61.721 63.158 0.00 2.09 45.99 5.54
2121 3473 4.523558 ACTAGTGTCACCCTCAGAGTAAAC 59.476 45.833 0.00 0.00 0.00 2.01
2140 3492 3.252215 CAGGATCTTACCAGCGAGACTAG 59.748 52.174 0.00 0.00 0.00 2.57
2145 3497 1.115467 ACCAGGATCTTACCAGCGAG 58.885 55.000 0.00 0.00 0.00 5.03
2198 3550 5.126061 AGAGCTCATTATGTTGCGGATTTTT 59.874 36.000 17.77 0.00 0.00 1.94
2461 3822 3.975992 GTGGTTTAGCAGCACGATG 57.024 52.632 0.00 0.00 43.81 3.84
2469 4292 1.184431 TATCGTCGGGTGGTTTAGCA 58.816 50.000 0.00 0.00 0.00 3.49
2473 4296 0.390209 CGGTTATCGTCGGGTGGTTT 60.390 55.000 0.00 0.00 0.00 3.27
2494 4317 4.796231 GTCGTCGATGCCAGCGGT 62.796 66.667 1.22 0.00 0.00 5.68
2682 4505 6.785076 TCCTCTCTCTCTCTCTCTTTTAACA 58.215 40.000 0.00 0.00 0.00 2.41
2683 4506 7.148069 CCTTCCTCTCTCTCTCTCTCTTTTAAC 60.148 44.444 0.00 0.00 0.00 2.01
2684 4507 6.889722 CCTTCCTCTCTCTCTCTCTCTTTTAA 59.110 42.308 0.00 0.00 0.00 1.52
2685 4508 6.423182 CCTTCCTCTCTCTCTCTCTCTTTTA 58.577 44.000 0.00 0.00 0.00 1.52
2686 4509 5.264395 CCTTCCTCTCTCTCTCTCTCTTTT 58.736 45.833 0.00 0.00 0.00 2.27
2687 4510 4.860022 CCTTCCTCTCTCTCTCTCTCTTT 58.140 47.826 0.00 0.00 0.00 2.52
2688 4511 3.372025 GCCTTCCTCTCTCTCTCTCTCTT 60.372 52.174 0.00 0.00 0.00 2.85
2689 4512 2.173569 GCCTTCCTCTCTCTCTCTCTCT 59.826 54.545 0.00 0.00 0.00 3.10
2691 4514 1.215423 GGCCTTCCTCTCTCTCTCTCT 59.785 57.143 0.00 0.00 0.00 3.10
2692 4515 1.215423 AGGCCTTCCTCTCTCTCTCTC 59.785 57.143 0.00 0.00 38.72 3.20
2693 4516 1.308877 AGGCCTTCCTCTCTCTCTCT 58.691 55.000 0.00 0.00 38.72 3.10
2694 4517 1.756538 CAAGGCCTTCCTCTCTCTCTC 59.243 57.143 17.29 0.00 43.40 3.20
2695 4518 1.622173 CCAAGGCCTTCCTCTCTCTCT 60.622 57.143 17.29 0.00 43.40 3.10
2696 4519 0.829990 CCAAGGCCTTCCTCTCTCTC 59.170 60.000 17.29 0.00 43.40 3.20
2697 4520 0.620121 CCCAAGGCCTTCCTCTCTCT 60.620 60.000 17.29 0.00 43.40 3.10
2698 4521 1.911471 CCCAAGGCCTTCCTCTCTC 59.089 63.158 17.29 0.00 43.40 3.20
2809 4661 2.680913 GGCGCAGTAGCACCACTTG 61.681 63.158 10.83 0.00 42.60 3.16
2810 4662 2.358737 GGCGCAGTAGCACCACTT 60.359 61.111 10.83 0.00 42.60 3.16
2825 4677 3.730761 GATGGCGATGGCGATGGC 61.731 66.667 7.17 7.17 37.76 4.40
2835 4687 3.399181 GGGTGAGGGTGATGGCGA 61.399 66.667 0.00 0.00 0.00 5.54
2836 4688 3.391665 GAGGGTGAGGGTGATGGCG 62.392 68.421 0.00 0.00 0.00 5.69
2837 4689 2.300967 TGAGGGTGAGGGTGATGGC 61.301 63.158 0.00 0.00 0.00 4.40
2838 4690 1.604378 GTGAGGGTGAGGGTGATGG 59.396 63.158 0.00 0.00 0.00 3.51
2839 4691 1.200760 TGGTGAGGGTGAGGGTGATG 61.201 60.000 0.00 0.00 0.00 3.07
2840 4692 0.253347 ATGGTGAGGGTGAGGGTGAT 60.253 55.000 0.00 0.00 0.00 3.06
2841 4693 1.160870 ATGGTGAGGGTGAGGGTGA 59.839 57.895 0.00 0.00 0.00 4.02
2842 4694 1.200760 TCATGGTGAGGGTGAGGGTG 61.201 60.000 0.00 0.00 0.00 4.61
2843 4695 0.475632 TTCATGGTGAGGGTGAGGGT 60.476 55.000 0.00 0.00 0.00 4.34
2844 4696 0.035056 GTTCATGGTGAGGGTGAGGG 60.035 60.000 0.00 0.00 0.00 4.30
2845 4697 0.035056 GGTTCATGGTGAGGGTGAGG 60.035 60.000 0.00 0.00 0.00 3.86
2846 4698 0.692476 TGGTTCATGGTGAGGGTGAG 59.308 55.000 0.00 0.00 0.00 3.51
2873 4725 5.576774 GTGAACAGGGACAAAGAAAAACAAG 59.423 40.000 0.00 0.00 0.00 3.16
2890 4757 5.816919 ACGTACCAAAAATGAAGTGAACAG 58.183 37.500 0.00 0.00 0.00 3.16
2911 4792 3.000078 GGTGATGACGCAACAGTAATACG 60.000 47.826 0.00 0.00 0.00 3.06
2912 4793 3.930229 TGGTGATGACGCAACAGTAATAC 59.070 43.478 0.00 0.00 30.68 1.89
2913 4794 4.195225 TGGTGATGACGCAACAGTAATA 57.805 40.909 0.00 0.00 30.68 0.98
2914 4795 3.052455 TGGTGATGACGCAACAGTAAT 57.948 42.857 0.00 0.00 30.68 1.89
2980 4861 1.956477 AGTTTGCACCAGTGGAATCAC 59.044 47.619 18.40 5.70 40.52 3.06
3022 4903 4.537751 TGCAGGTAGCTCTGTAGTAATCT 58.462 43.478 4.51 0.00 45.94 2.40
3032 4913 1.053264 CCTGGGATGCAGGTAGCTCT 61.053 60.000 0.00 0.00 45.94 4.09
3033 4914 1.449353 CCTGGGATGCAGGTAGCTC 59.551 63.158 0.00 0.00 45.94 4.09
3034 4915 2.750657 GCCTGGGATGCAGGTAGCT 61.751 63.158 0.00 0.00 45.94 3.32
3035 4916 2.203266 GCCTGGGATGCAGGTAGC 60.203 66.667 0.00 0.00 41.73 3.58
3036 4917 0.250640 GATGCCTGGGATGCAGGTAG 60.251 60.000 5.06 0.00 42.92 3.18
3037 4918 0.987613 TGATGCCTGGGATGCAGGTA 60.988 55.000 5.06 0.00 42.92 3.08
3038 4919 1.652187 ATGATGCCTGGGATGCAGGT 61.652 55.000 5.06 0.00 42.92 4.00
3039 4920 0.894184 GATGATGCCTGGGATGCAGG 60.894 60.000 5.06 0.00 42.92 4.85
3040 4921 0.179001 TGATGATGCCTGGGATGCAG 60.179 55.000 5.06 0.00 42.92 4.41
3041 4922 0.259356 TTGATGATGCCTGGGATGCA 59.741 50.000 5.06 4.16 43.97 3.96
3042 4923 1.405872 TTTGATGATGCCTGGGATGC 58.594 50.000 5.06 0.00 0.00 3.91
3043 4924 3.227614 TGATTTGATGATGCCTGGGATG 58.772 45.455 5.06 0.00 0.00 3.51
3046 4927 4.475051 TTTTGATTTGATGATGCCTGGG 57.525 40.909 0.00 0.00 0.00 4.45
3047 4928 5.239351 TGTTTTTGATTTGATGATGCCTGG 58.761 37.500 0.00 0.00 0.00 4.45
3048 4929 6.647481 TCTTGTTTTTGATTTGATGATGCCTG 59.353 34.615 0.00 0.00 0.00 4.85
3049 4930 6.761312 TCTTGTTTTTGATTTGATGATGCCT 58.239 32.000 0.00 0.00 0.00 4.75
3170 5056 2.725641 GTGTGGTTTTGGGGCGAC 59.274 61.111 0.00 0.00 0.00 5.19
3171 5057 2.519780 GGTGTGGTTTTGGGGCGA 60.520 61.111 0.00 0.00 0.00 5.54
3172 5058 3.611674 GGGTGTGGTTTTGGGGCG 61.612 66.667 0.00 0.00 0.00 6.13
3173 5059 3.611674 CGGGTGTGGTTTTGGGGC 61.612 66.667 0.00 0.00 0.00 5.80
3174 5060 2.196229 TCGGGTGTGGTTTTGGGG 59.804 61.111 0.00 0.00 0.00 4.96
3175 5061 2.197605 GGTCGGGTGTGGTTTTGGG 61.198 63.158 0.00 0.00 0.00 4.12
3176 5062 2.197605 GGGTCGGGTGTGGTTTTGG 61.198 63.158 0.00 0.00 0.00 3.28
3177 5063 2.197605 GGGGTCGGGTGTGGTTTTG 61.198 63.158 0.00 0.00 0.00 2.44
3178 5064 2.196502 GGGGTCGGGTGTGGTTTT 59.803 61.111 0.00 0.00 0.00 2.43
3179 5065 3.893399 GGGGGTCGGGTGTGGTTT 61.893 66.667 0.00 0.00 0.00 3.27
3182 5068 3.892162 TTTGGGGGTCGGGTGTGG 61.892 66.667 0.00 0.00 0.00 4.17
3183 5069 2.596338 GTTTGGGGGTCGGGTGTG 60.596 66.667 0.00 0.00 0.00 3.82
3184 5070 3.893399 GGTTTGGGGGTCGGGTGT 61.893 66.667 0.00 0.00 0.00 4.16
3195 5081 4.636435 AGGTCGGGTGCGGTTTGG 62.636 66.667 0.00 0.00 0.00 3.28
3196 5082 3.047877 GAGGTCGGGTGCGGTTTG 61.048 66.667 0.00 0.00 0.00 2.93
3197 5083 3.236003 GAGAGGTCGGGTGCGGTTT 62.236 63.158 0.00 0.00 0.00 3.27
3198 5084 3.692406 GAGAGGTCGGGTGCGGTT 61.692 66.667 0.00 0.00 0.00 4.44
3199 5085 4.680537 AGAGAGGTCGGGTGCGGT 62.681 66.667 0.00 0.00 0.00 5.68
3200 5086 3.358076 GAAGAGAGGTCGGGTGCGG 62.358 68.421 0.00 0.00 0.00 5.69
3201 5087 2.182030 GAAGAGAGGTCGGGTGCG 59.818 66.667 0.00 0.00 0.00 5.34
3202 5088 2.579738 GGAAGAGAGGTCGGGTGC 59.420 66.667 0.00 0.00 0.00 5.01
3203 5089 2.359967 GGGGAAGAGAGGTCGGGTG 61.360 68.421 0.00 0.00 0.00 4.61
3204 5090 2.039137 GGGGAAGAGAGGTCGGGT 59.961 66.667 0.00 0.00 0.00 5.28
3205 5091 3.148279 CGGGGAAGAGAGGTCGGG 61.148 72.222 0.00 0.00 0.00 5.14
3206 5092 2.044252 TCGGGGAAGAGAGGTCGG 60.044 66.667 0.00 0.00 0.00 4.79
3207 5093 2.122167 CCTCGGGGAAGAGAGGTCG 61.122 68.421 0.00 0.00 46.68 4.79
3208 5094 3.942601 CCTCGGGGAAGAGAGGTC 58.057 66.667 0.00 0.00 46.68 3.85
3211 5097 3.532155 CCGCCTCGGGGAAGAGAG 61.532 72.222 4.80 0.00 44.15 3.20
3249 5135 2.998949 GGTGTGGATGGGGACTCC 59.001 66.667 0.00 0.00 0.00 3.85
3250 5136 2.584608 CGGTGTGGATGGGGACTC 59.415 66.667 0.00 0.00 0.00 3.36
3251 5137 3.717294 GCGGTGTGGATGGGGACT 61.717 66.667 0.00 0.00 0.00 3.85
3252 5138 4.796495 GGCGGTGTGGATGGGGAC 62.796 72.222 0.00 0.00 0.00 4.46
3255 5141 4.489771 GAGGGCGGTGTGGATGGG 62.490 72.222 0.00 0.00 0.00 4.00
3256 5142 3.687321 CTGAGGGCGGTGTGGATGG 62.687 68.421 0.00 0.00 0.00 3.51
3257 5143 2.124983 CTGAGGGCGGTGTGGATG 60.125 66.667 0.00 0.00 0.00 3.51
3258 5144 4.101448 GCTGAGGGCGGTGTGGAT 62.101 66.667 0.00 0.00 0.00 3.41
3268 5154 4.767892 AAGGGGGAGGGCTGAGGG 62.768 72.222 0.00 0.00 0.00 4.30
3269 5155 3.093172 GAAGGGGGAGGGCTGAGG 61.093 72.222 0.00 0.00 0.00 3.86
3270 5156 1.695597 ATGAAGGGGGAGGGCTGAG 60.696 63.158 0.00 0.00 0.00 3.35
3271 5157 1.694169 GATGAAGGGGGAGGGCTGA 60.694 63.158 0.00 0.00 0.00 4.26
3272 5158 2.922234 GATGAAGGGGGAGGGCTG 59.078 66.667 0.00 0.00 0.00 4.85
3273 5159 2.770048 CGATGAAGGGGGAGGGCT 60.770 66.667 0.00 0.00 0.00 5.19
3274 5160 3.090532 ACGATGAAGGGGGAGGGC 61.091 66.667 0.00 0.00 0.00 5.19
3275 5161 1.383248 AGACGATGAAGGGGGAGGG 60.383 63.158 0.00 0.00 0.00 4.30
3276 5162 1.403687 GGAGACGATGAAGGGGGAGG 61.404 65.000 0.00 0.00 0.00 4.30
3277 5163 1.403687 GGGAGACGATGAAGGGGGAG 61.404 65.000 0.00 0.00 0.00 4.30
3278 5164 1.382695 GGGAGACGATGAAGGGGGA 60.383 63.158 0.00 0.00 0.00 4.81
3279 5165 1.689233 TGGGAGACGATGAAGGGGG 60.689 63.158 0.00 0.00 0.00 5.40
3280 5166 0.978146 AGTGGGAGACGATGAAGGGG 60.978 60.000 0.00 0.00 0.00 4.79
3281 5167 1.776662 TAGTGGGAGACGATGAAGGG 58.223 55.000 0.00 0.00 0.00 3.95
3282 5168 2.030717 CGATAGTGGGAGACGATGAAGG 60.031 54.545 0.00 0.00 0.00 3.46
3283 5169 2.605823 GCGATAGTGGGAGACGATGAAG 60.606 54.545 0.00 0.00 39.35 3.02
3284 5170 1.337071 GCGATAGTGGGAGACGATGAA 59.663 52.381 0.00 0.00 39.35 2.57
3285 5171 0.952280 GCGATAGTGGGAGACGATGA 59.048 55.000 0.00 0.00 39.35 2.92
3286 5172 0.039074 GGCGATAGTGGGAGACGATG 60.039 60.000 0.00 0.00 39.35 3.84
3287 5173 1.516365 CGGCGATAGTGGGAGACGAT 61.516 60.000 0.00 0.00 39.35 3.73
3288 5174 2.184830 CGGCGATAGTGGGAGACGA 61.185 63.158 0.00 0.00 39.35 4.20
3289 5175 2.331805 CGGCGATAGTGGGAGACG 59.668 66.667 0.00 0.00 39.35 4.18
3290 5176 2.027751 GCGGCGATAGTGGGAGAC 59.972 66.667 12.98 0.00 39.35 3.36
3291 5177 3.224324 GGCGGCGATAGTGGGAGA 61.224 66.667 12.98 0.00 39.35 3.71
3292 5178 2.701163 GAAGGCGGCGATAGTGGGAG 62.701 65.000 12.98 0.00 39.35 4.30
3293 5179 2.762459 AAGGCGGCGATAGTGGGA 60.762 61.111 12.98 0.00 39.35 4.37
3294 5180 2.280186 GAAGGCGGCGATAGTGGG 60.280 66.667 12.98 0.00 39.35 4.61
3295 5181 2.658593 CGAAGGCGGCGATAGTGG 60.659 66.667 12.98 0.00 39.35 4.00
3296 5182 3.330853 GCGAAGGCGGCGATAGTG 61.331 66.667 12.98 0.00 38.16 2.74
3297 5183 3.528370 AGCGAAGGCGGCGATAGT 61.528 61.111 12.98 0.00 46.35 2.12
3298 5184 3.032609 CAGCGAAGGCGGCGATAG 61.033 66.667 12.98 0.00 46.35 2.08
3299 5185 3.484742 CTCAGCGAAGGCGGCGATA 62.485 63.158 12.98 0.00 46.35 2.92
3300 5186 4.880537 CTCAGCGAAGGCGGCGAT 62.881 66.667 12.98 0.00 46.35 4.58
3329 5215 4.329545 TCACCACAGGGGCTTCGC 62.330 66.667 0.00 0.00 42.05 4.70
3330 5216 2.046892 CTCACCACAGGGGCTTCG 60.047 66.667 0.00 0.00 42.05 3.79
3331 5217 2.352805 CCTCACCACAGGGGCTTC 59.647 66.667 0.00 0.00 42.05 3.86
3332 5218 3.971702 GCCTCACCACAGGGGCTT 61.972 66.667 0.00 0.00 42.05 4.35
3364 5250 4.753662 TACCGCTGGCCGAGGACT 62.754 66.667 20.47 5.37 40.02 3.85
3365 5251 3.766691 TTACCGCTGGCCGAGGAC 61.767 66.667 20.47 0.00 40.02 3.85
3366 5252 3.766691 GTTACCGCTGGCCGAGGA 61.767 66.667 20.47 5.30 40.02 3.71
3393 5279 4.899239 GGGAGATGGACGCCGCTG 62.899 72.222 0.00 0.00 39.38 5.18
3395 5281 4.593864 GAGGGAGATGGACGCCGC 62.594 72.222 0.00 0.00 39.38 6.53
3396 5282 3.917760 GGAGGGAGATGGACGCCG 61.918 72.222 0.00 0.00 39.38 6.46
3397 5283 3.551407 GGGAGGGAGATGGACGCC 61.551 72.222 0.00 0.00 37.74 5.68
3398 5284 3.551407 GGGGAGGGAGATGGACGC 61.551 72.222 0.00 0.00 0.00 5.19
3399 5285 2.844839 GGGGGAGGGAGATGGACG 60.845 72.222 0.00 0.00 0.00 4.79
3400 5286 1.460497 GAGGGGGAGGGAGATGGAC 60.460 68.421 0.00 0.00 0.00 4.02
3401 5287 2.727071 GGAGGGGGAGGGAGATGGA 61.727 68.421 0.00 0.00 0.00 3.41
3402 5288 2.122189 GGAGGGGGAGGGAGATGG 60.122 72.222 0.00 0.00 0.00 3.51
3403 5289 0.624500 TTTGGAGGGGGAGGGAGATG 60.625 60.000 0.00 0.00 0.00 2.90
3404 5290 0.327964 CTTTGGAGGGGGAGGGAGAT 60.328 60.000 0.00 0.00 0.00 2.75
3405 5291 1.082954 CTTTGGAGGGGGAGGGAGA 59.917 63.158 0.00 0.00 0.00 3.71
3406 5292 2.003548 CCTTTGGAGGGGGAGGGAG 61.004 68.421 0.00 0.00 39.55 4.30
3407 5293 2.127297 CCTTTGGAGGGGGAGGGA 59.873 66.667 0.00 0.00 39.55 4.20
3408 5294 3.744155 GCCTTTGGAGGGGGAGGG 61.744 72.222 0.00 0.00 43.75 4.30
3409 5295 2.941025 TGCCTTTGGAGGGGGAGG 60.941 66.667 0.00 0.00 43.75 4.30
3410 5296 2.234296 ACTGCCTTTGGAGGGGGAG 61.234 63.158 0.00 0.00 43.75 4.30
3411 5297 2.121506 ACTGCCTTTGGAGGGGGA 60.122 61.111 0.00 0.00 43.75 4.81
3412 5298 2.036256 CACTGCCTTTGGAGGGGG 59.964 66.667 0.00 0.00 43.75 5.40
3413 5299 2.677875 GCACTGCCTTTGGAGGGG 60.678 66.667 0.00 0.00 43.75 4.79
3414 5300 3.058160 CGCACTGCCTTTGGAGGG 61.058 66.667 0.00 0.00 43.75 4.30
3415 5301 3.741476 GCGCACTGCCTTTGGAGG 61.741 66.667 0.30 0.00 46.50 4.30
3416 5302 2.974489 CTGCGCACTGCCTTTGGAG 61.974 63.158 5.66 0.00 45.60 3.86
3417 5303 2.979676 CTGCGCACTGCCTTTGGA 60.980 61.111 5.66 0.00 45.60 3.53
3418 5304 3.289834 ACTGCGCACTGCCTTTGG 61.290 61.111 5.66 0.00 45.60 3.28
3419 5305 2.050714 CACTGCGCACTGCCTTTG 60.051 61.111 5.66 0.00 45.60 2.77
3420 5306 3.289834 CCACTGCGCACTGCCTTT 61.290 61.111 5.66 0.00 45.60 3.11
3424 5310 4.332637 CAACCCACTGCGCACTGC 62.333 66.667 5.66 0.00 46.70 4.40
3425 5311 3.663176 CCAACCCACTGCGCACTG 61.663 66.667 5.66 8.24 0.00 3.66
3426 5312 4.189580 ACCAACCCACTGCGCACT 62.190 61.111 5.66 0.00 0.00 4.40
3427 5313 3.964875 CACCAACCCACTGCGCAC 61.965 66.667 5.66 0.00 0.00 5.34
3430 5316 3.286751 CACCACCAACCCACTGCG 61.287 66.667 0.00 0.00 0.00 5.18
3431 5317 2.912025 CCACCACCAACCCACTGC 60.912 66.667 0.00 0.00 0.00 4.40
3432 5318 2.912025 GCCACCACCAACCCACTG 60.912 66.667 0.00 0.00 0.00 3.66
3433 5319 4.218686 GGCCACCACCAACCCACT 62.219 66.667 0.00 0.00 0.00 4.00
3434 5320 4.531426 TGGCCACCACCAACCCAC 62.531 66.667 0.00 0.00 36.55 4.61
3435 5321 4.217210 CTGGCCACCACCAACCCA 62.217 66.667 0.00 0.00 39.86 4.51
3436 5322 4.994756 CCTGGCCACCACCAACCC 62.995 72.222 0.00 0.00 39.86 4.11
3437 5323 3.868200 CTCCTGGCCACCACCAACC 62.868 68.421 0.00 0.00 39.86 3.77
3438 5324 2.142292 ATCTCCTGGCCACCACCAAC 62.142 60.000 0.00 0.00 39.86 3.77
3439 5325 1.852157 ATCTCCTGGCCACCACCAA 60.852 57.895 0.00 0.00 39.86 3.67
3440 5326 2.204136 ATCTCCTGGCCACCACCA 60.204 61.111 0.00 0.00 38.29 4.17
3441 5327 1.566298 AAGATCTCCTGGCCACCACC 61.566 60.000 0.00 0.00 0.00 4.61
3442 5328 0.107459 GAAGATCTCCTGGCCACCAC 60.107 60.000 0.00 0.00 0.00 4.16
3443 5329 1.617018 CGAAGATCTCCTGGCCACCA 61.617 60.000 0.00 0.00 0.00 4.17
3444 5330 1.144936 CGAAGATCTCCTGGCCACC 59.855 63.158 0.00 0.00 0.00 4.61
3445 5331 1.144936 CCGAAGATCTCCTGGCCAC 59.855 63.158 0.00 0.00 0.00 5.01
3446 5332 2.735772 GCCGAAGATCTCCTGGCCA 61.736 63.158 17.67 4.71 39.83 5.36
3447 5333 2.110006 GCCGAAGATCTCCTGGCC 59.890 66.667 17.67 0.00 39.83 5.36
3448 5334 2.279784 CGCCGAAGATCTCCTGGC 60.280 66.667 18.23 18.23 42.29 4.85
3449 5335 2.419198 CCGCCGAAGATCTCCTGG 59.581 66.667 0.00 0.00 0.00 4.45
3450 5336 2.279784 GCCGCCGAAGATCTCCTG 60.280 66.667 0.00 0.00 0.00 3.86
3451 5337 3.541713 GGCCGCCGAAGATCTCCT 61.542 66.667 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.