Multiple sequence alignment - TraesCS2A01G557600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G557600 chr2A 100.000 4503 0 0 1 4503 761245109 761249611 0.000000e+00 8316.0
1 TraesCS2A01G557600 chr2A 85.530 387 46 8 154 530 117365898 117366284 3.260000e-106 396.0
2 TraesCS2A01G557600 chr2A 87.368 95 1 7 4395 4489 769498665 769498582 1.030000e-16 99.0
3 TraesCS2A01G557600 chr2B 92.631 1167 52 12 1640 2791 794051399 794050252 0.000000e+00 1648.0
4 TraesCS2A01G557600 chr2B 83.977 1398 112 45 4 1346 794053155 794051815 0.000000e+00 1238.0
5 TraesCS2A01G557600 chr2B 89.529 764 49 14 3074 3825 794049825 794049081 0.000000e+00 939.0
6 TraesCS2A01G557600 chr2B 84.235 425 43 17 4090 4503 794049010 794048599 4.220000e-105 392.0
7 TraesCS2A01G557600 chr2B 84.456 386 48 10 154 529 166418304 166418687 1.980000e-98 370.0
8 TraesCS2A01G557600 chr2B 95.050 202 9 1 2805 3005 794050041 794049840 2.610000e-82 316.0
9 TraesCS2A01G557600 chr2B 96.491 57 2 0 3870 3926 794049068 794049012 1.330000e-15 95.3
10 TraesCS2A01G557600 chr2D 89.514 906 67 11 1837 2734 635952150 635951265 0.000000e+00 1122.0
11 TraesCS2A01G557600 chr2D 86.131 959 71 25 2873 3825 635950957 635950055 0.000000e+00 977.0
12 TraesCS2A01G557600 chr2D 88.056 427 22 16 911 1332 635952952 635952550 3.150000e-131 479.0
13 TraesCS2A01G557600 chr2D 83.771 419 44 17 4088 4491 635949979 635949570 4.250000e-100 375.0
14 TraesCS2A01G557600 chr2D 83.465 381 54 7 159 530 115931891 115932271 3.330000e-91 346.0
15 TraesCS2A01G557600 chr2D 79.618 471 65 16 88 530 155067729 155067262 4.370000e-80 309.0
16 TraesCS2A01G557600 chr2D 97.647 170 3 1 3926 4094 161906851 161907020 1.580000e-74 291.0
17 TraesCS2A01G557600 chr2D 91.667 156 9 1 1652 1803 635952396 635952241 3.530000e-51 213.0
18 TraesCS2A01G557600 chr2D 75.365 479 74 33 88 529 402707664 402707193 1.650000e-44 191.0
19 TraesCS2A01G557600 chr2D 86.614 127 6 5 1491 1607 635952520 635952395 3.660000e-26 130.0
20 TraesCS2A01G557600 chr2D 92.857 70 5 0 88 157 324430796 324430865 7.970000e-18 102.0
21 TraesCS2A01G557600 chr2D 97.561 41 0 1 684 723 635953111 635953071 8.080000e-08 69.4
22 TraesCS2A01G557600 chr6D 96.040 404 14 1 4088 4491 156193148 156193549 0.000000e+00 656.0
23 TraesCS2A01G557600 chr6D 83.113 379 56 8 154 527 346949530 346949905 5.580000e-89 339.0
24 TraesCS2A01G557600 chr6D 97.701 87 2 0 3842 3928 156193064 156193150 2.810000e-32 150.0
25 TraesCS2A01G557600 chr3D 82.979 376 56 8 159 530 311707788 311708159 2.600000e-87 333.0
26 TraesCS2A01G557600 chr3D 98.824 85 1 0 3842 3926 535158725 535158809 7.800000e-33 152.0
27 TraesCS2A01G557600 chr3D 97.701 87 2 0 3842 3928 25846370 25846456 2.810000e-32 150.0
28 TraesCS2A01G557600 chr5A 82.383 386 59 8 151 530 303405787 303405405 1.210000e-85 327.0
29 TraesCS2A01G557600 chr5A 88.406 69 8 0 88 156 484396302 484396370 2.890000e-12 84.2
30 TraesCS2A01G557600 chr3B 82.632 380 57 8 154 527 10206953 10207329 1.210000e-85 327.0
31 TraesCS2A01G557600 chr1D 81.201 383 59 11 154 530 446432605 446432230 3.410000e-76 296.0
32 TraesCS2A01G557600 chr1D 96.591 176 5 1 3925 4099 196817845 196817670 1.580000e-74 291.0
33 TraesCS2A01G557600 chr1D 93.194 191 7 6 3906 4094 393753468 393753282 4.440000e-70 276.0
34 TraesCS2A01G557600 chr1D 100.000 87 0 0 3842 3928 24992210 24992124 1.300000e-35 161.0
35 TraesCS2A01G557600 chr1D 78.169 142 25 6 1045 1183 426174902 426175040 8.030000e-13 86.1
36 TraesCS2A01G557600 chr4D 98.214 168 2 1 3924 4090 93338209 93338042 4.410000e-75 292.0
37 TraesCS2A01G557600 chr5B 96.571 175 5 1 3922 4095 6397224 6397050 5.700000e-74 289.0
38 TraesCS2A01G557600 chr5B 88.235 68 8 0 90 157 8021355 8021288 1.040000e-11 82.4
39 TraesCS2A01G557600 chr4B 94.681 188 7 3 3914 4100 585609113 585609298 5.700000e-74 289.0
40 TraesCS2A01G557600 chr4B 92.857 70 5 0 88 157 66781203 66781272 7.970000e-18 102.0
41 TraesCS2A01G557600 chr7D 95.556 180 4 4 3913 4090 39001272 39001449 7.370000e-73 285.0
42 TraesCS2A01G557600 chr6A 97.590 166 4 0 3927 4092 60016873 60016708 7.370000e-73 285.0
43 TraesCS2A01G557600 chr6A 76.923 312 54 16 208 509 52488334 52488637 1.300000e-35 161.0
44 TraesCS2A01G557600 chr5D 93.651 189 9 2 3927 4112 321901914 321902102 3.430000e-71 279.0
45 TraesCS2A01G557600 chr5D 100.000 87 0 0 3842 3928 69455523 69455609 1.300000e-35 161.0
46 TraesCS2A01G557600 chr5D 92.188 64 5 0 88 151 7912076 7912013 1.730000e-14 91.6
47 TraesCS2A01G557600 chr3A 80.115 347 58 10 191 530 384739806 384739464 9.670000e-62 248.0
48 TraesCS2A01G557600 chr7B 97.701 87 2 0 3842 3928 152912685 152912599 2.810000e-32 150.0
49 TraesCS2A01G557600 chr7B 89.655 87 0 1 3842 3928 65396807 65396884 7.970000e-18 102.0
50 TraesCS2A01G557600 chr7A 89.773 88 7 2 4352 4437 674873953 674874040 1.320000e-20 111.0
51 TraesCS2A01G557600 chr1B 80.000 115 19 4 1071 1183 575861159 575861271 1.040000e-11 82.4
52 TraesCS2A01G557600 chr1A 80.000 115 19 4 1071 1183 521289224 521289336 1.040000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G557600 chr2A 761245109 761249611 4502 False 8316.000000 8316 100.000000 1 4503 1 chr2A.!!$F2 4502
1 TraesCS2A01G557600 chr2B 794048599 794053155 4556 True 771.383333 1648 90.318833 4 4503 6 chr2B.!!$R1 4499
2 TraesCS2A01G557600 chr2D 635949570 635953111 3541 True 480.771429 1122 89.044857 684 4491 7 chr2D.!!$R3 3807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 242 0.389757 GGGCGACAGATAGGGTCTTC 59.610 60.0 0.0 0.0 34.00 2.87 F
1904 2204 0.385473 AAGTTGCGAATTTCGTGGCG 60.385 50.0 19.1 0.0 42.81 5.69 F
2803 3355 0.535797 CCAAGGACGGAGGGAGTAAC 59.464 60.0 0.0 0.0 0.00 2.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2349 0.100325 CCGCACTGCAAGACAAAACA 59.900 50.0 1.11 0.0 37.43 2.83 R
3143 3705 0.027194 CTGAAATGTCATGCGAGGCG 59.973 55.0 0.00 0.0 31.85 5.52 R
3670 4235 0.834687 AACTCCCACTCCGGTGCTAA 60.835 55.0 0.00 0.0 41.75 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.550406 CATGATAATTTATTTGGCCAATTGACT 57.450 29.630 21.26 4.02 0.00 3.41
82 83 5.689383 TTGACTAGCAAAATGTTGGACTC 57.311 39.130 0.00 0.00 35.10 3.36
97 98 2.271800 GGACTCGCTGGTGTTATTCTG 58.728 52.381 0.00 0.00 0.00 3.02
115 116 8.660373 GTTATTCTGAACACCAGTGATAGAAAG 58.340 37.037 4.48 0.00 43.38 2.62
127 128 7.182206 ACCAGTGATAGAAAGGTTTAGTATGGT 59.818 37.037 0.00 0.00 0.00 3.55
162 186 2.899256 TCCTTGGGGATTCAAGCTTTTG 59.101 45.455 0.00 0.00 41.89 2.44
176 200 6.680810 TCAAGCTTTTGTCTGATTATTGTGG 58.319 36.000 0.00 0.00 0.00 4.17
179 203 5.769662 AGCTTTTGTCTGATTATTGTGGTCA 59.230 36.000 0.00 0.00 0.00 4.02
192 216 8.863872 ATTATTGTGGTCATAATTACTAGGGC 57.136 34.615 0.00 0.00 0.00 5.19
214 238 3.537874 GCGGGCGACAGATAGGGT 61.538 66.667 0.00 0.00 0.00 4.34
218 242 0.389757 GGGCGACAGATAGGGTCTTC 59.610 60.000 0.00 0.00 34.00 2.87
224 248 1.831736 ACAGATAGGGTCTTCGGTTGG 59.168 52.381 0.00 0.00 34.00 3.77
242 266 2.771089 TGGACAACTGACTCTTGATGC 58.229 47.619 0.00 0.00 0.00 3.91
246 270 2.369860 ACAACTGACTCTTGATGCAGGA 59.630 45.455 0.00 0.00 32.82 3.86
249 273 2.836372 ACTGACTCTTGATGCAGGATGA 59.164 45.455 0.00 0.00 39.69 2.92
254 278 1.558294 TCTTGATGCAGGATGAGTGCT 59.442 47.619 0.00 0.00 41.78 4.40
263 288 1.973515 AGGATGAGTGCTGTCAAGACA 59.026 47.619 2.56 2.56 39.32 3.41
280 305 6.375455 GTCAAGACATAATTTGGACACATCCT 59.625 38.462 0.00 0.00 46.43 3.24
286 311 6.375455 ACATAATTTGGACACATCCTCACTTC 59.625 38.462 0.00 0.00 46.43 3.01
290 315 2.094026 TGGACACATCCTCACTTCGATG 60.094 50.000 0.00 0.00 46.43 3.84
292 317 0.926155 CACATCCTCACTTCGATGCG 59.074 55.000 0.00 0.00 39.63 4.73
320 345 6.677431 GCAGTCAAATCTTGATGGATGACTTC 60.677 42.308 16.96 12.29 42.47 3.01
340 365 8.593679 TGACTTCCAGAGTACAAATTAAGATCA 58.406 33.333 0.00 0.00 39.19 2.92
341 366 9.606631 GACTTCCAGAGTACAAATTAAGATCAT 57.393 33.333 0.00 0.00 39.19 2.45
374 399 7.811282 TCCTGACACAAATATATGGGTGTAAT 58.189 34.615 17.78 2.04 43.91 1.89
404 429 8.225603 AGTCCTTATACACATGCCTATTTTTG 57.774 34.615 0.00 0.00 0.00 2.44
407 432 9.688091 TCCTTATACACATGCCTATTTTTGTAA 57.312 29.630 0.00 0.00 0.00 2.41
436 461 7.649306 AGTGTTTTCAACATCAGCTTGATTTAC 59.351 33.333 0.00 0.00 44.35 2.01
443 468 3.520290 TCAGCTTGATTTACGATCCGT 57.480 42.857 0.00 0.00 44.35 4.69
450 475 5.163893 GCTTGATTTACGATCCGTTCAAAGA 60.164 40.000 0.00 0.00 41.54 2.52
465 490 9.624697 TCCGTTCAAAGATGAAATTTAATTCTG 57.375 29.630 0.00 0.00 46.66 3.02
497 522 7.981102 ACTTGTTTAAGACCCTAGCTTAAAG 57.019 36.000 11.71 5.89 44.11 1.85
505 530 2.789409 CCTAGCTTAAAGGGCACTGT 57.211 50.000 0.00 0.00 0.00 3.55
512 537 4.800554 AAGGGCACTGTCCTTTCG 57.199 55.556 9.29 0.00 46.43 3.46
531 556 2.422479 TCGTGGGTTCGATAACTCAGAG 59.578 50.000 0.00 0.00 46.73 3.35
532 557 2.422479 CGTGGGTTCGATAACTCAGAGA 59.578 50.000 3.79 0.00 46.73 3.10
557 599 7.979444 AAAAAGACGAGATTCATTCCTGTTA 57.021 32.000 0.00 0.00 0.00 2.41
564 606 8.608844 ACGAGATTCATTCCTGTTATATTTCC 57.391 34.615 0.00 0.00 0.00 3.13
565 607 8.210946 ACGAGATTCATTCCTGTTATATTTCCA 58.789 33.333 0.00 0.00 0.00 3.53
566 608 9.224267 CGAGATTCATTCCTGTTATATTTCCAT 57.776 33.333 0.00 0.00 0.00 3.41
571 613 8.450578 TCATTCCTGTTATATTTCCATGTCAC 57.549 34.615 0.00 0.00 0.00 3.67
574 616 9.784531 ATTCCTGTTATATTTCCATGTCACTAG 57.215 33.333 0.00 0.00 0.00 2.57
577 619 7.875041 CCTGTTATATTTCCATGTCACTAGAGG 59.125 40.741 0.00 0.00 0.00 3.69
580 622 9.262358 GTTATATTTCCATGTCACTAGAGGAAC 57.738 37.037 0.00 0.00 38.03 3.62
590 632 6.017192 TGTCACTAGAGGAACTAATCAAGGT 58.983 40.000 0.00 0.00 41.55 3.50
594 636 4.917906 AGAGGAACTAATCAAGGTGCTT 57.082 40.909 0.00 0.00 44.88 3.91
595 637 4.583871 AGAGGAACTAATCAAGGTGCTTG 58.416 43.478 0.00 0.00 44.88 4.01
599 641 5.248477 AGGAACTAATCAAGGTGCTTGTAGA 59.752 40.000 0.00 0.00 41.58 2.59
604 646 8.723942 ACTAATCAAGGTGCTTGTAGAAATAG 57.276 34.615 0.00 0.00 41.66 1.73
605 647 8.540388 ACTAATCAAGGTGCTTGTAGAAATAGA 58.460 33.333 0.00 0.00 41.66 1.98
607 649 8.814038 AATCAAGGTGCTTGTAGAAATAGAAT 57.186 30.769 0.00 0.00 41.66 2.40
610 652 6.992063 AGGTGCTTGTAGAAATAGAATGTG 57.008 37.500 0.00 0.00 0.00 3.21
611 653 5.355350 AGGTGCTTGTAGAAATAGAATGTGC 59.645 40.000 0.00 0.00 0.00 4.57
612 654 5.258622 GTGCTTGTAGAAATAGAATGTGCG 58.741 41.667 0.00 0.00 0.00 5.34
613 655 4.935205 TGCTTGTAGAAATAGAATGTGCGT 59.065 37.500 0.00 0.00 0.00 5.24
614 656 6.035650 GTGCTTGTAGAAATAGAATGTGCGTA 59.964 38.462 0.00 0.00 0.00 4.42
615 657 6.035650 TGCTTGTAGAAATAGAATGTGCGTAC 59.964 38.462 0.00 0.00 0.00 3.67
616 658 6.035650 GCTTGTAGAAATAGAATGTGCGTACA 59.964 38.462 9.28 9.28 41.89 2.90
628 670 4.475763 TGTGCGTACATTTACAAAGGTG 57.524 40.909 0.82 0.00 34.45 4.00
630 672 4.212425 TGTGCGTACATTTACAAAGGTGAG 59.788 41.667 0.82 0.00 34.45 3.51
634 676 4.378046 CGTACATTTACAAAGGTGAGTGGC 60.378 45.833 2.46 0.00 34.45 5.01
635 677 2.890945 ACATTTACAAAGGTGAGTGGCC 59.109 45.455 0.00 0.00 30.94 5.36
639 681 1.071471 CAAAGGTGAGTGGCCGAGT 59.929 57.895 0.00 0.00 0.00 4.18
641 683 1.696097 AAAGGTGAGTGGCCGAGTGT 61.696 55.000 0.00 0.00 0.00 3.55
646 688 1.891919 GAGTGGCCGAGTGTTTGCA 60.892 57.895 0.00 0.00 0.00 4.08
653 695 2.031683 GGCCGAGTGTTTGCATATGTAC 59.968 50.000 4.29 1.61 0.00 2.90
658 700 4.388773 CGAGTGTTTGCATATGTACTGTGT 59.611 41.667 4.29 0.00 0.00 3.72
659 701 5.611796 AGTGTTTGCATATGTACTGTGTG 57.388 39.130 4.29 0.00 0.00 3.82
660 702 4.083324 AGTGTTTGCATATGTACTGTGTGC 60.083 41.667 4.29 11.58 36.39 4.57
733 776 3.356529 AGAAATTAGTGACAGGGCTGG 57.643 47.619 0.00 0.00 34.19 4.85
734 777 2.912956 AGAAATTAGTGACAGGGCTGGA 59.087 45.455 0.00 0.00 34.19 3.86
735 778 3.330701 AGAAATTAGTGACAGGGCTGGAA 59.669 43.478 0.00 0.00 34.19 3.53
736 779 3.806949 AATTAGTGACAGGGCTGGAAA 57.193 42.857 0.00 0.00 34.19 3.13
737 780 3.806949 ATTAGTGACAGGGCTGGAAAA 57.193 42.857 0.00 0.00 34.19 2.29
831 878 6.572167 AAGGAAGAGAAAAATTCTGCTCAG 57.428 37.500 0.00 0.00 40.87 3.35
1077 1133 1.080366 GTACACGGGCATGTCGTCA 60.080 57.895 12.06 2.95 38.94 4.35
1092 1148 1.967779 TCGTCAGACAACATCAAGGGA 59.032 47.619 0.41 0.00 0.00 4.20
1228 1284 3.148279 CGTTCCCCTCCTCCCTCG 61.148 72.222 0.00 0.00 0.00 4.63
1266 1322 3.925913 CGCAATTCGGGTTGAAAAATCAT 59.074 39.130 5.11 0.00 40.71 2.45
1304 1360 2.808206 CCGCAGACCACCCTATCCC 61.808 68.421 0.00 0.00 0.00 3.85
1309 1370 1.384643 GACCACCCTATCCCCTGCT 60.385 63.158 0.00 0.00 0.00 4.24
1318 1379 3.628257 CCCTATCCCCTGCTCAAAAATGT 60.628 47.826 0.00 0.00 0.00 2.71
1338 1399 4.588899 TGTCATCCCCATTTCAGTGTTAG 58.411 43.478 0.00 0.00 0.00 2.34
1365 1572 1.142465 CACCTGCCTGATGCCTATCTT 59.858 52.381 0.00 0.00 40.16 2.40
1370 1577 2.439135 TGCCTGATGCCTATCTTGCTTA 59.561 45.455 0.00 0.00 40.16 3.09
1371 1578 3.073503 TGCCTGATGCCTATCTTGCTTAT 59.926 43.478 0.00 0.00 40.16 1.73
1372 1579 4.286808 TGCCTGATGCCTATCTTGCTTATA 59.713 41.667 0.00 0.00 40.16 0.98
1373 1580 5.045359 TGCCTGATGCCTATCTTGCTTATAT 60.045 40.000 0.00 0.00 40.16 0.86
1375 1582 6.038050 GCCTGATGCCTATCTTGCTTATATTC 59.962 42.308 0.00 0.00 34.31 1.75
1376 1583 7.108194 CCTGATGCCTATCTTGCTTATATTCA 58.892 38.462 0.00 0.00 34.31 2.57
1377 1584 7.280428 CCTGATGCCTATCTTGCTTATATTCAG 59.720 40.741 0.00 0.00 34.31 3.02
1446 1657 1.984297 GTCGACCGCAGTTTAGACTTC 59.016 52.381 3.51 0.00 32.54 3.01
1462 1683 9.535878 GTTTAGACTTCTATTATGTCCTTCCAG 57.464 37.037 0.00 0.00 33.70 3.86
1478 1699 4.273480 CCTTCCAGTGTTAATCGCATTAGG 59.727 45.833 0.00 0.00 0.00 2.69
1569 1799 1.347817 CTCGCTGCTCGGTGAAGTTC 61.348 60.000 0.00 0.00 39.05 3.01
1607 1837 0.960861 GTGCCCCCAAGCTGTTACTC 60.961 60.000 0.00 0.00 0.00 2.59
1608 1838 1.378646 GCCCCCAAGCTGTTACTCC 60.379 63.158 0.00 0.00 0.00 3.85
1609 1839 1.303282 CCCCCAAGCTGTTACTCCC 59.697 63.158 0.00 0.00 0.00 4.30
1610 1840 1.303282 CCCCAAGCTGTTACTCCCC 59.697 63.158 0.00 0.00 0.00 4.81
1611 1841 1.303282 CCCAAGCTGTTACTCCCCC 59.697 63.158 0.00 0.00 0.00 5.40
1612 1842 1.208165 CCCAAGCTGTTACTCCCCCT 61.208 60.000 0.00 0.00 0.00 4.79
1613 1843 1.580059 CCAAGCTGTTACTCCCCCTA 58.420 55.000 0.00 0.00 0.00 3.53
1614 1844 1.913419 CCAAGCTGTTACTCCCCCTAA 59.087 52.381 0.00 0.00 0.00 2.69
1615 1845 2.092914 CCAAGCTGTTACTCCCCCTAAG 60.093 54.545 0.00 0.00 0.00 2.18
1616 1846 1.205055 AGCTGTTACTCCCCCTAAGC 58.795 55.000 0.00 0.00 0.00 3.09
1617 1847 1.205055 GCTGTTACTCCCCCTAAGCT 58.795 55.000 0.00 0.00 0.00 3.74
1618 1848 1.134371 GCTGTTACTCCCCCTAAGCTG 60.134 57.143 0.00 0.00 0.00 4.24
1619 1849 0.909623 TGTTACTCCCCCTAAGCTGC 59.090 55.000 0.00 0.00 0.00 5.25
1620 1850 1.205055 GTTACTCCCCCTAAGCTGCT 58.795 55.000 0.00 0.00 0.00 4.24
1621 1851 2.292653 TGTTACTCCCCCTAAGCTGCTA 60.293 50.000 0.90 0.00 0.00 3.49
1622 1852 2.770232 GTTACTCCCCCTAAGCTGCTAA 59.230 50.000 0.90 0.00 0.00 3.09
1623 1853 2.198334 ACTCCCCCTAAGCTGCTAAT 57.802 50.000 0.90 0.00 0.00 1.73
1624 1854 2.050918 ACTCCCCCTAAGCTGCTAATC 58.949 52.381 0.90 0.00 0.00 1.75
1625 1855 1.349357 CTCCCCCTAAGCTGCTAATCC 59.651 57.143 0.90 0.00 0.00 3.01
1626 1856 1.140312 CCCCCTAAGCTGCTAATCCA 58.860 55.000 0.90 0.00 0.00 3.41
1627 1857 1.707427 CCCCCTAAGCTGCTAATCCAT 59.293 52.381 0.90 0.00 0.00 3.41
1628 1858 2.553904 CCCCCTAAGCTGCTAATCCATG 60.554 54.545 0.90 0.00 0.00 3.66
1629 1859 2.373169 CCCCTAAGCTGCTAATCCATGA 59.627 50.000 0.90 0.00 0.00 3.07
1630 1860 3.406764 CCCTAAGCTGCTAATCCATGAC 58.593 50.000 0.90 0.00 0.00 3.06
1631 1861 3.406764 CCTAAGCTGCTAATCCATGACC 58.593 50.000 0.90 0.00 0.00 4.02
1632 1862 3.181451 CCTAAGCTGCTAATCCATGACCA 60.181 47.826 0.90 0.00 0.00 4.02
1633 1863 3.589951 AAGCTGCTAATCCATGACCAT 57.410 42.857 0.90 0.00 0.00 3.55
1634 1864 4.712051 AAGCTGCTAATCCATGACCATA 57.288 40.909 0.90 0.00 0.00 2.74
1635 1865 4.923516 AGCTGCTAATCCATGACCATAT 57.076 40.909 0.00 0.00 0.00 1.78
1636 1866 6.378661 AAGCTGCTAATCCATGACCATATA 57.621 37.500 0.90 0.00 0.00 0.86
1637 1867 5.738909 AGCTGCTAATCCATGACCATATAC 58.261 41.667 0.00 0.00 0.00 1.47
1638 1868 4.568359 GCTGCTAATCCATGACCATATACG 59.432 45.833 0.00 0.00 0.00 3.06
1672 1902 9.317936 CATATCTTAAGTCTTGTGCTTCATGTA 57.682 33.333 1.63 0.00 0.00 2.29
1724 1954 1.750778 CATGTTATCACAGGGGTTGGC 59.249 52.381 0.00 0.00 35.94 4.52
1730 1960 1.001393 CACAGGGGTTGGCGGTTAT 60.001 57.895 0.00 0.00 0.00 1.89
1736 1966 2.019249 GGGGTTGGCGGTTATTCTTAC 58.981 52.381 0.00 0.00 0.00 2.34
1782 2016 5.565592 TGGCATGATAACAAGTAAGCAAG 57.434 39.130 0.00 0.00 0.00 4.01
1784 2018 4.031028 GCATGATAACAAGTAAGCAAGCG 58.969 43.478 0.00 0.00 0.00 4.68
1846 2146 5.840081 AGGTACCTCAACTTATCCTGTACT 58.160 41.667 9.21 0.00 0.00 2.73
1847 2147 5.657302 AGGTACCTCAACTTATCCTGTACTG 59.343 44.000 9.21 0.00 0.00 2.74
1859 2159 8.470805 ACTTATCCTGTACTGTCTACATTTCTG 58.529 37.037 0.00 0.00 0.00 3.02
1901 2201 1.401018 GGGGAAGTTGCGAATTTCGTG 60.401 52.381 19.10 0.00 42.81 4.35
1904 2204 0.385473 AAGTTGCGAATTTCGTGGCG 60.385 50.000 19.10 0.00 42.81 5.69
1983 2283 0.965866 GCAAGGCTTCTGGGGTTACC 60.966 60.000 0.00 0.00 40.81 2.85
2010 2310 3.755378 CCTTCCTTCCTGTGTTTCATCTG 59.245 47.826 0.00 0.00 0.00 2.90
2026 2326 8.534496 TGTTTCATCTGATGAGATTCTTACTGA 58.466 33.333 18.80 0.00 40.94 3.41
2044 2344 9.565090 TCTTACTGATTTCATCATTAATCTGGG 57.435 33.333 0.00 0.00 38.85 4.45
2045 2345 8.696043 TTACTGATTTCATCATTAATCTGGGG 57.304 34.615 0.00 0.00 38.85 4.96
2046 2346 6.073314 ACTGATTTCATCATTAATCTGGGGG 58.927 40.000 0.00 0.00 38.85 5.40
2047 2347 6.029492 TGATTTCATCATTAATCTGGGGGT 57.971 37.500 0.00 0.00 33.59 4.95
2048 2348 6.442961 TGATTTCATCATTAATCTGGGGGTT 58.557 36.000 0.00 0.00 33.59 4.11
2049 2349 6.902416 TGATTTCATCATTAATCTGGGGGTTT 59.098 34.615 0.00 0.00 33.59 3.27
2050 2350 6.543430 TTTCATCATTAATCTGGGGGTTTG 57.457 37.500 0.00 0.00 0.00 2.93
2051 2351 5.205517 TCATCATTAATCTGGGGGTTTGT 57.794 39.130 0.00 0.00 0.00 2.83
2052 2352 5.588845 TCATCATTAATCTGGGGGTTTGTT 58.411 37.500 0.00 0.00 0.00 2.83
2053 2353 6.022315 TCATCATTAATCTGGGGGTTTGTTT 58.978 36.000 0.00 0.00 0.00 2.83
2054 2354 6.500049 TCATCATTAATCTGGGGGTTTGTTTT 59.500 34.615 0.00 0.00 0.00 2.43
2055 2355 6.107901 TCATTAATCTGGGGGTTTGTTTTG 57.892 37.500 0.00 0.00 0.00 2.44
2056 2356 5.604650 TCATTAATCTGGGGGTTTGTTTTGT 59.395 36.000 0.00 0.00 0.00 2.83
2057 2357 5.538849 TTAATCTGGGGGTTTGTTTTGTC 57.461 39.130 0.00 0.00 0.00 3.18
2058 2358 2.838637 TCTGGGGGTTTGTTTTGTCT 57.161 45.000 0.00 0.00 0.00 3.41
2067 2367 1.906757 TTGTTTTGTCTTGCAGTGCG 58.093 45.000 11.20 0.00 0.00 5.34
2082 2382 1.952133 TGCGGTACTTGCACACGTC 60.952 57.895 8.88 0.00 37.44 4.34
2139 2439 1.478137 GATGCGTCCTATGTGTCGTC 58.522 55.000 0.00 0.00 0.00 4.20
2145 2445 1.948145 GTCCTATGTGTCGTCGGATCT 59.052 52.381 0.00 0.00 0.00 2.75
2158 2458 2.431057 GTCGGATCTACCACCATTGTCT 59.569 50.000 0.00 0.00 38.90 3.41
2276 2589 4.706962 GGAATGTTCCTTCCAGTGCTTTAT 59.293 41.667 4.53 0.00 43.56 1.40
2286 2599 4.072131 TCCAGTGCTTTATCAACTTCACC 58.928 43.478 0.00 0.00 0.00 4.02
2370 2683 3.482472 CGTAGTACTTGCTATTGTCGCTG 59.518 47.826 0.00 0.00 0.00 5.18
2393 2706 3.781079 CTTGTGTTCAAGCTTGTTCCA 57.219 42.857 25.19 16.69 43.34 3.53
2435 2748 4.037446 GTCATGGTGTACATTGGTGTTTGT 59.963 41.667 0.00 0.00 37.84 2.83
2464 2777 3.821421 AGGTTCCATCTCGGTATGTTC 57.179 47.619 0.00 0.00 35.57 3.18
2466 2779 3.385111 AGGTTCCATCTCGGTATGTTCTC 59.615 47.826 0.00 0.00 35.57 2.87
2467 2780 3.385111 GGTTCCATCTCGGTATGTTCTCT 59.615 47.826 0.00 0.00 35.57 3.10
2468 2781 4.500035 GGTTCCATCTCGGTATGTTCTCTC 60.500 50.000 0.00 0.00 35.57 3.20
2470 2783 2.959030 CCATCTCGGTATGTTCTCTCCA 59.041 50.000 0.00 0.00 0.00 3.86
2471 2784 3.005261 CCATCTCGGTATGTTCTCTCCAG 59.995 52.174 0.00 0.00 0.00 3.86
2473 2786 3.698289 TCTCGGTATGTTCTCTCCAGTT 58.302 45.455 0.00 0.00 0.00 3.16
2474 2787 3.695060 TCTCGGTATGTTCTCTCCAGTTC 59.305 47.826 0.00 0.00 0.00 3.01
2476 2789 3.444034 TCGGTATGTTCTCTCCAGTTCTG 59.556 47.826 0.00 0.00 0.00 3.02
2478 2791 4.398358 CGGTATGTTCTCTCCAGTTCTGTA 59.602 45.833 0.00 0.00 0.00 2.74
2479 2792 5.067936 CGGTATGTTCTCTCCAGTTCTGTAT 59.932 44.000 0.00 0.00 0.00 2.29
2480 2793 6.508777 GGTATGTTCTCTCCAGTTCTGTATC 58.491 44.000 0.00 0.00 0.00 2.24
2481 2794 6.322712 GGTATGTTCTCTCCAGTTCTGTATCT 59.677 42.308 0.00 0.00 0.00 1.98
2482 2795 5.906113 TGTTCTCTCCAGTTCTGTATCTC 57.094 43.478 0.00 0.00 0.00 2.75
2483 2796 5.575157 TGTTCTCTCCAGTTCTGTATCTCT 58.425 41.667 0.00 0.00 0.00 3.10
2484 2797 5.417266 TGTTCTCTCCAGTTCTGTATCTCTG 59.583 44.000 0.00 0.00 0.00 3.35
2485 2798 5.443230 TCTCTCCAGTTCTGTATCTCTGA 57.557 43.478 0.00 0.00 0.00 3.27
2486 2799 5.189928 TCTCTCCAGTTCTGTATCTCTGAC 58.810 45.833 0.00 0.00 0.00 3.51
2487 2800 4.274147 TCTCCAGTTCTGTATCTCTGACC 58.726 47.826 0.00 0.00 0.00 4.02
2488 2801 3.366396 TCCAGTTCTGTATCTCTGACCC 58.634 50.000 0.00 0.00 0.00 4.46
2494 2807 5.830991 AGTTCTGTATCTCTGACCCTGTATC 59.169 44.000 0.00 0.00 0.00 2.24
2497 2810 6.535540 TCTGTATCTCTGACCCTGTATCTAC 58.464 44.000 0.00 0.00 0.00 2.59
2510 2823 4.448395 CCTGTATCTACCGTTCTCTAGTCG 59.552 50.000 0.00 0.00 0.00 4.18
2766 3079 3.181447 ACGAGGGTGATCGGAGTTCTATA 60.181 47.826 0.91 0.00 46.91 1.31
2791 3142 8.788325 AACTGTACAAGATATAAACCAAGGAC 57.212 34.615 0.00 0.00 0.00 3.85
2792 3143 7.039882 ACTGTACAAGATATAAACCAAGGACG 58.960 38.462 0.00 0.00 0.00 4.79
2793 3144 6.342906 TGTACAAGATATAAACCAAGGACGG 58.657 40.000 0.00 0.00 0.00 4.79
2795 3146 5.671493 ACAAGATATAAACCAAGGACGGAG 58.329 41.667 0.00 0.00 0.00 4.63
2798 3149 1.961133 ATAAACCAAGGACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
2799 3150 1.272807 TAAACCAAGGACGGAGGGAG 58.727 55.000 0.00 0.00 0.00 4.30
2803 3355 0.535797 CCAAGGACGGAGGGAGTAAC 59.464 60.000 0.00 0.00 0.00 2.50
2820 3372 5.334957 GGAGTAACTTTTAGCTCAGCAAACC 60.335 44.000 0.00 0.00 0.00 3.27
2821 3373 5.130350 AGTAACTTTTAGCTCAGCAAACCA 58.870 37.500 0.00 0.00 0.00 3.67
2832 3384 4.365723 CTCAGCAAACCATATGAAATGGC 58.634 43.478 3.65 1.46 42.82 4.40
2896 3450 1.626321 TGACAACTGATTTCGCCCCTA 59.374 47.619 0.00 0.00 0.00 3.53
2914 3468 1.068127 CTAAATGCATTGCAGGCCCTC 59.932 52.381 17.52 0.00 43.65 4.30
3005 3559 6.258068 GGCTAGTGTGATTATGTTCAAGGTAC 59.742 42.308 0.00 0.00 0.00 3.34
3006 3560 6.019801 GCTAGTGTGATTATGTTCAAGGTACG 60.020 42.308 0.00 0.00 0.00 3.67
3007 3561 5.790593 AGTGTGATTATGTTCAAGGTACGT 58.209 37.500 0.00 0.00 0.00 3.57
3008 3562 6.927416 AGTGTGATTATGTTCAAGGTACGTA 58.073 36.000 0.00 0.00 0.00 3.57
3009 3563 6.810182 AGTGTGATTATGTTCAAGGTACGTAC 59.190 38.462 17.56 17.56 0.00 3.67
3018 3572 4.968812 TCAAGGTACGTACGATGATTCA 57.031 40.909 24.41 6.30 0.00 2.57
3034 3588 8.072567 ACGATGATTCAATTGCTTAAGCTATTC 58.927 33.333 27.22 19.15 42.76 1.75
3048 3602 9.684448 GCTTAAGCTATTCTTTTGTTTCTTTCT 57.316 29.630 20.38 0.00 36.25 2.52
3050 3604 7.936950 AAGCTATTCTTTTGTTTCTTTCTGC 57.063 32.000 0.00 0.00 0.00 4.26
3078 3632 8.523915 TTCATGGCATTTCATTCAAGTAGTAT 57.476 30.769 0.00 0.00 0.00 2.12
3079 3633 8.158169 TCATGGCATTTCATTCAAGTAGTATC 57.842 34.615 0.00 0.00 0.00 2.24
3080 3634 6.942532 TGGCATTTCATTCAAGTAGTATCC 57.057 37.500 0.00 0.00 0.00 2.59
3092 3653 8.777865 TTCAAGTAGTATCCATCAAGAAGTTG 57.222 34.615 0.00 0.00 34.67 3.16
3099 3660 3.674997 TCCATCAAGAAGTTGTAGCCAC 58.325 45.455 0.00 0.00 34.98 5.01
3112 3673 1.679153 GTAGCCACTCTCTCCAGCTAC 59.321 57.143 4.87 4.87 46.28 3.58
3135 3697 5.182001 ACAAATGCTTGTAGTCAGAACATCC 59.818 40.000 0.00 0.00 44.14 3.51
3140 3702 4.499183 CTTGTAGTCAGAACATCCCAGTC 58.501 47.826 0.00 0.00 0.00 3.51
3141 3703 3.506398 TGTAGTCAGAACATCCCAGTCA 58.494 45.455 0.00 0.00 0.00 3.41
3143 3705 3.902881 AGTCAGAACATCCCAGTCATC 57.097 47.619 0.00 0.00 0.00 2.92
3146 3708 0.179000 AGAACATCCCAGTCATCGCC 59.821 55.000 0.00 0.00 0.00 5.54
3154 3716 1.227060 CAGTCATCGCCTCGCATGA 60.227 57.895 0.00 0.00 0.00 3.07
3162 3724 0.027194 CGCCTCGCATGACATTTCAG 59.973 55.000 0.00 0.00 34.35 3.02
3165 3727 2.095059 GCCTCGCATGACATTTCAGTTT 60.095 45.455 0.00 0.00 34.35 2.66
3166 3728 3.495193 CCTCGCATGACATTTCAGTTTG 58.505 45.455 0.00 0.00 34.35 2.93
3168 3730 4.154015 CCTCGCATGACATTTCAGTTTGTA 59.846 41.667 0.00 0.00 34.35 2.41
3171 3733 5.643348 TCGCATGACATTTCAGTTTGTATCT 59.357 36.000 0.00 0.00 34.35 1.98
3233 3798 1.354337 CGGAGATGTGTGGCTTCGTG 61.354 60.000 0.00 0.00 0.00 4.35
3292 3857 2.700897 AGGACATGGCTGATGGTACTAC 59.299 50.000 0.00 0.00 36.23 2.73
3298 3863 2.426024 TGGCTGATGGTACTACGAGTTC 59.574 50.000 0.00 0.00 0.00 3.01
3307 3872 3.057033 GGTACTACGAGTTCTGCTCCAAA 60.057 47.826 0.00 0.00 41.10 3.28
3313 3878 2.147150 GAGTTCTGCTCCAAACTGACC 58.853 52.381 0.00 0.00 38.27 4.02
3403 3968 4.749245 TTCAAACTCTTCTTCATTCCGC 57.251 40.909 0.00 0.00 0.00 5.54
3451 4016 4.081972 TCCTTCAAGCAGACAGATGAGTAC 60.082 45.833 0.00 0.00 0.00 2.73
3615 4180 2.333926 TCTCGGCTGTTTCGTATGTTG 58.666 47.619 0.00 0.00 0.00 3.33
3656 4221 5.146298 AGCCCCAAGGTATCTAAGTAGTAC 58.854 45.833 0.00 0.00 34.57 2.73
3657 4222 4.022503 GCCCCAAGGTATCTAAGTAGTACG 60.023 50.000 0.00 0.00 34.57 3.67
3658 4223 5.136105 CCCCAAGGTATCTAAGTAGTACGT 58.864 45.833 0.00 0.00 0.00 3.57
3659 4224 6.299141 CCCCAAGGTATCTAAGTAGTACGTA 58.701 44.000 0.00 0.00 0.00 3.57
3667 4232 8.125448 GGTATCTAAGTAGTACGTAGGTTGTTG 58.875 40.741 19.19 0.00 32.25 3.33
3670 4235 3.160269 AGTAGTACGTAGGTTGTTGGCT 58.840 45.455 0.00 0.00 0.00 4.75
3699 4264 3.446161 CGGAGTGGGAGTTGTTCTGTATA 59.554 47.826 0.00 0.00 0.00 1.47
3700 4265 4.081862 CGGAGTGGGAGTTGTTCTGTATAA 60.082 45.833 0.00 0.00 0.00 0.98
3701 4266 5.395324 CGGAGTGGGAGTTGTTCTGTATAAT 60.395 44.000 0.00 0.00 0.00 1.28
3702 4267 5.817816 GGAGTGGGAGTTGTTCTGTATAATG 59.182 44.000 0.00 0.00 0.00 1.90
3724 4297 2.057137 TGGATGGGTTATCAAGCAGC 57.943 50.000 0.00 0.00 37.54 5.25
3741 4314 3.049206 GCAGCGTGCTGAAATTTTAACA 58.951 40.909 25.09 0.00 46.30 2.41
3742 4315 3.121362 GCAGCGTGCTGAAATTTTAACAC 60.121 43.478 25.09 6.46 46.30 3.32
3743 4316 4.041049 CAGCGTGCTGAAATTTTAACACA 58.959 39.130 16.69 0.00 46.30 3.72
3744 4317 4.146961 CAGCGTGCTGAAATTTTAACACAG 59.853 41.667 16.69 8.01 46.30 3.66
3745 4318 4.041723 GCGTGCTGAAATTTTAACACAGT 58.958 39.130 14.52 0.00 0.00 3.55
3746 4319 4.502645 GCGTGCTGAAATTTTAACACAGTT 59.497 37.500 14.52 0.00 0.00 3.16
3747 4320 5.005299 GCGTGCTGAAATTTTAACACAGTTT 59.995 36.000 14.52 0.00 0.00 2.66
3748 4321 6.197468 GCGTGCTGAAATTTTAACACAGTTTA 59.803 34.615 14.52 0.00 0.00 2.01
3749 4322 7.543756 CGTGCTGAAATTTTAACACAGTTTAC 58.456 34.615 14.52 7.27 0.00 2.01
3750 4323 7.431084 CGTGCTGAAATTTTAACACAGTTTACT 59.569 33.333 14.52 0.00 0.00 2.24
3751 4324 9.083080 GTGCTGAAATTTTAACACAGTTTACTT 57.917 29.630 10.61 0.00 0.00 2.24
3752 4325 9.296400 TGCTGAAATTTTAACACAGTTTACTTC 57.704 29.630 0.00 0.00 0.00 3.01
3770 4343 2.839486 TCGCTGTTGAGATGGTTTCT 57.161 45.000 0.00 0.00 37.41 2.52
3780 4353 7.174413 TGTTGAGATGGTTTCTTCCAATATGA 58.826 34.615 0.00 0.00 41.09 2.15
3810 4389 6.803154 AGGTAAACTTAGAAATGTCAGCAC 57.197 37.500 0.00 0.00 0.00 4.40
3828 4407 9.926158 TGTCAGCACAATATTCATAATGTTTTT 57.074 25.926 0.00 0.00 0.00 1.94
3935 4515 9.708092 GTTTATTCATTAGTATGTACTCCCTCC 57.292 37.037 0.00 0.00 37.73 4.30
3936 4516 6.591750 ATTCATTAGTATGTACTCCCTCCG 57.408 41.667 0.00 0.00 37.73 4.63
3937 4517 5.057843 TCATTAGTATGTACTCCCTCCGT 57.942 43.478 0.00 0.00 37.73 4.69
3938 4518 5.452255 TCATTAGTATGTACTCCCTCCGTT 58.548 41.667 0.00 0.00 37.73 4.44
3939 4519 5.533903 TCATTAGTATGTACTCCCTCCGTTC 59.466 44.000 0.00 0.00 37.73 3.95
3940 4520 2.664015 AGTATGTACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
3941 4521 2.244252 AGTATGTACTCCCTCCGTTCCT 59.756 50.000 0.00 0.00 0.00 3.36
3942 4522 3.461085 AGTATGTACTCCCTCCGTTCCTA 59.539 47.826 0.00 0.00 0.00 2.94
3943 4523 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3944 4524 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3945 4525 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3946 4526 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3947 4527 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3948 4528 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
3949 4529 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3950 4530 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3951 4531 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3952 4532 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3953 4533 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3954 4534 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3955 4535 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3956 4536 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3957 4537 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
3973 4553 9.965824 TTTGTCTTTTTAGAGATTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
3974 4554 8.924511 TGTCTTTTTAGAGATTCAAATGGACT 57.075 30.769 0.00 0.00 0.00 3.85
3977 4557 9.449719 TCTTTTTAGAGATTCAAATGGACTACC 57.550 33.333 0.00 0.00 0.00 3.18
3990 4570 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
3991 4571 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
3992 4572 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
3993 4573 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
3994 4574 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
3995 4575 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
3996 4576 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
3997 4577 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
3998 4578 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
3999 4579 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
4000 4580 7.772166 ACCACATACGGATGTATATAGACATG 58.228 38.462 17.40 6.96 44.82 3.21
4001 4581 7.396339 ACCACATACGGATGTATATAGACATGT 59.604 37.037 17.40 12.10 44.82 3.21
4002 4582 8.251026 CCACATACGGATGTATATAGACATGTT 58.749 37.037 17.40 4.40 44.82 2.71
4003 4583 9.639601 CACATACGGATGTATATAGACATGTTT 57.360 33.333 17.40 3.45 44.82 2.83
4019 4599 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
4030 4610 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4031 4611 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4032 4612 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4033 4613 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4034 4614 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4035 4615 4.631813 AGATTCACTCATTTTGCTCCGTAC 59.368 41.667 0.00 0.00 0.00 3.67
4036 4616 2.333926 TCACTCATTTTGCTCCGTACG 58.666 47.619 8.69 8.69 0.00 3.67
4037 4617 2.066262 CACTCATTTTGCTCCGTACGT 58.934 47.619 15.21 0.00 0.00 3.57
4038 4618 3.057386 TCACTCATTTTGCTCCGTACGTA 60.057 43.478 15.21 0.00 0.00 3.57
4039 4619 3.303495 CACTCATTTTGCTCCGTACGTAG 59.697 47.826 15.21 9.26 0.00 3.51
4041 4621 3.504863 TCATTTTGCTCCGTACGTAGTC 58.495 45.455 15.21 5.03 43.93 2.59
4042 4622 3.057386 TCATTTTGCTCCGTACGTAGTCA 60.057 43.478 15.21 7.62 43.93 3.41
4043 4623 2.336554 TTTGCTCCGTACGTAGTCAC 57.663 50.000 15.21 0.00 43.93 3.67
4044 4624 1.527034 TTGCTCCGTACGTAGTCACT 58.473 50.000 15.21 0.00 43.93 3.41
4045 4625 1.527034 TGCTCCGTACGTAGTCACTT 58.473 50.000 15.21 0.00 43.93 3.16
4046 4626 1.198408 TGCTCCGTACGTAGTCACTTG 59.802 52.381 15.21 0.00 43.93 3.16
4047 4627 1.198637 GCTCCGTACGTAGTCACTTGT 59.801 52.381 15.21 0.00 43.93 3.16
4048 4628 2.351157 GCTCCGTACGTAGTCACTTGTT 60.351 50.000 15.21 0.00 43.93 2.83
4049 4629 3.231965 CTCCGTACGTAGTCACTTGTTG 58.768 50.000 15.21 0.00 43.93 3.33
4050 4630 2.877786 TCCGTACGTAGTCACTTGTTGA 59.122 45.455 15.21 0.00 43.93 3.18
4051 4631 3.314913 TCCGTACGTAGTCACTTGTTGAA 59.685 43.478 15.21 0.00 43.93 2.69
4052 4632 4.043750 CCGTACGTAGTCACTTGTTGAAA 58.956 43.478 15.21 0.00 43.93 2.69
4053 4633 4.682860 CCGTACGTAGTCACTTGTTGAAAT 59.317 41.667 15.21 0.00 43.93 2.17
4054 4634 5.164119 CCGTACGTAGTCACTTGTTGAAATC 60.164 44.000 15.21 0.00 43.93 2.17
4055 4635 5.628193 CGTACGTAGTCACTTGTTGAAATCT 59.372 40.000 7.22 0.00 43.93 2.40
4056 4636 6.183359 CGTACGTAGTCACTTGTTGAAATCTC 60.183 42.308 7.22 0.00 43.93 2.75
4057 4637 5.844004 ACGTAGTCACTTGTTGAAATCTCT 58.156 37.500 0.00 0.00 29.74 3.10
4058 4638 6.978338 ACGTAGTCACTTGTTGAAATCTCTA 58.022 36.000 0.00 0.00 29.74 2.43
4059 4639 7.085116 ACGTAGTCACTTGTTGAAATCTCTAG 58.915 38.462 0.00 0.00 29.74 2.43
4060 4640 7.040617 ACGTAGTCACTTGTTGAAATCTCTAGA 60.041 37.037 0.00 0.00 29.74 2.43
4061 4641 7.808381 CGTAGTCACTTGTTGAAATCTCTAGAA 59.192 37.037 0.00 0.00 35.39 2.10
4062 4642 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
4063 4643 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
4064 4644 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
4065 4645 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4066 4646 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4067 4647 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
4068 4648 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
4081 4661 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4082 4662 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4083 4663 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4084 4664 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4085 4665 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4086 4666 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4107 4687 5.053145 GGAGTAGTTTGTATGGCTCAGATG 58.947 45.833 0.00 0.00 0.00 2.90
4196 4780 9.770097 ATATCAGAACACAACCTGTATTATCAG 57.230 33.333 0.00 0.00 30.51 2.90
4200 4784 4.261801 ACACAACCTGTATTATCAGCCAC 58.738 43.478 0.00 0.00 34.47 5.01
4207 4791 6.525629 ACCTGTATTATCAGCCACTATTCAC 58.474 40.000 0.00 0.00 34.47 3.18
4217 4801 5.046663 TCAGCCACTATTCACTACATCAACA 60.047 40.000 0.00 0.00 0.00 3.33
4218 4802 5.292834 CAGCCACTATTCACTACATCAACAG 59.707 44.000 0.00 0.00 0.00 3.16
4233 4817 4.607293 TCAACAGCATACACAAGAGACT 57.393 40.909 0.00 0.00 0.00 3.24
4234 4818 4.960938 TCAACAGCATACACAAGAGACTT 58.039 39.130 0.00 0.00 0.00 3.01
4236 4820 6.521162 TCAACAGCATACACAAGAGACTTAA 58.479 36.000 0.00 0.00 0.00 1.85
4237 4821 6.423905 TCAACAGCATACACAAGAGACTTAAC 59.576 38.462 0.00 0.00 0.00 2.01
4238 4822 5.853936 ACAGCATACACAAGAGACTTAACA 58.146 37.500 0.00 0.00 0.00 2.41
4239 4823 6.467677 ACAGCATACACAAGAGACTTAACAT 58.532 36.000 0.00 0.00 0.00 2.71
4242 4826 8.759641 CAGCATACACAAGAGACTTAACATATC 58.240 37.037 0.00 0.00 0.00 1.63
4248 4832 8.543774 ACACAAGAGACTTAACATATCATCCTT 58.456 33.333 0.00 0.00 0.00 3.36
4251 4835 7.682787 AGAGACTTAACATATCATCCTTGGT 57.317 36.000 0.00 0.00 0.00 3.67
4256 4840 7.050377 ACTTAACATATCATCCTTGGTGACAG 58.950 38.462 0.00 0.00 44.54 3.51
4260 4844 1.649321 TCATCCTTGGTGACAGAGCT 58.351 50.000 0.00 0.00 44.54 4.09
4261 4845 1.277273 TCATCCTTGGTGACAGAGCTG 59.723 52.381 0.00 0.00 44.54 4.24
4263 4847 2.009681 TCCTTGGTGACAGAGCTGTA 57.990 50.000 2.65 0.00 45.05 2.74
4264 4848 2.540383 TCCTTGGTGACAGAGCTGTAT 58.460 47.619 2.65 0.00 45.05 2.29
4267 4851 1.269958 TGGTGACAGAGCTGTATGCT 58.730 50.000 2.65 0.00 46.87 3.79
4274 4863 9.199964 TGGTGACAGAGCTGTATGCTAACATTA 62.200 40.741 2.65 0.00 44.92 1.90
4337 4926 5.765176 TCATTGCAAACTTCTGAATGTCAG 58.235 37.500 1.71 0.00 45.59 3.51
4342 4931 2.936919 ACTTCTGAATGTCAGGCACA 57.063 45.000 5.46 0.00 44.39 4.57
4350 4939 0.320421 ATGTCAGGCACACGGTACAC 60.320 55.000 0.00 0.00 38.04 2.90
4359 4948 3.219981 GCACACGGTACACAATAAAACG 58.780 45.455 0.00 0.00 0.00 3.60
4366 4955 5.837586 GGTACACAATAAAACGTTACCGA 57.162 39.130 0.00 0.00 37.88 4.69
4368 4957 6.242829 GGTACACAATAAAACGTTACCGATG 58.757 40.000 0.00 0.27 37.88 3.84
4369 4958 5.285798 ACACAATAAAACGTTACCGATGG 57.714 39.130 0.00 0.00 37.88 3.51
4375 4964 1.930567 AACGTTACCGATGGGATTCG 58.069 50.000 0.00 4.38 38.83 3.34
4376 4965 1.105457 ACGTTACCGATGGGATTCGA 58.895 50.000 0.00 0.00 41.62 3.71
4377 4966 1.202336 ACGTTACCGATGGGATTCGAC 60.202 52.381 0.00 0.00 41.62 4.20
4378 4967 1.202325 CGTTACCGATGGGATTCGACA 60.202 52.381 0.00 0.00 41.62 4.35
4379 4968 2.545113 CGTTACCGATGGGATTCGACAT 60.545 50.000 0.00 0.00 41.62 3.06
4380 4969 3.057734 GTTACCGATGGGATTCGACATC 58.942 50.000 0.00 4.15 41.62 3.06
4382 4973 1.484653 ACCGATGGGATTCGACATCAA 59.515 47.619 12.56 1.50 42.72 2.57
4437 5029 4.002906 TGCAGGTTCTACCAACAAGTAG 57.997 45.455 0.00 0.00 41.95 2.57
4438 5030 2.742589 GCAGGTTCTACCAACAAGTAGC 59.257 50.000 0.00 0.00 41.95 3.58
4439 5031 3.805807 GCAGGTTCTACCAACAAGTAGCA 60.806 47.826 0.00 0.00 41.95 3.49
4440 5032 3.997021 CAGGTTCTACCAACAAGTAGCAG 59.003 47.826 0.00 0.00 41.95 4.24
4443 5035 1.278127 TCTACCAACAAGTAGCAGGCC 59.722 52.381 0.00 0.00 39.71 5.19
4461 5053 2.347731 GCCTAACTAACACCTGACAGC 58.652 52.381 0.00 0.00 0.00 4.40
4462 5054 2.289444 GCCTAACTAACACCTGACAGCA 60.289 50.000 0.00 0.00 0.00 4.41
4463 5055 3.589988 CCTAACTAACACCTGACAGCAG 58.410 50.000 0.00 0.00 41.93 4.24
4464 5056 1.884235 AACTAACACCTGACAGCAGC 58.116 50.000 0.00 0.00 40.91 5.25
4491 5083 2.289694 GGTGAGTGACAACAGCTACCAT 60.290 50.000 0.00 0.00 36.04 3.55
4492 5084 2.996621 GTGAGTGACAACAGCTACCATC 59.003 50.000 0.00 0.00 0.00 3.51
4493 5085 2.632512 TGAGTGACAACAGCTACCATCA 59.367 45.455 0.00 0.00 0.00 3.07
4494 5086 3.070878 TGAGTGACAACAGCTACCATCAA 59.929 43.478 0.00 0.00 0.00 2.57
4495 5087 3.668447 AGTGACAACAGCTACCATCAAG 58.332 45.455 0.00 0.00 0.00 3.02
4496 5088 2.744202 GTGACAACAGCTACCATCAAGG 59.256 50.000 0.00 0.00 45.67 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.054124 TGTTTGAAGGTTTCATTCTACTCACT 58.946 34.615 0.00 0.00 39.84 3.41
1 2 7.259290 TGTTTGAAGGTTTCATTCTACTCAC 57.741 36.000 0.00 0.00 39.84 3.51
2 3 8.463930 AATGTTTGAAGGTTTCATTCTACTCA 57.536 30.769 0.00 0.00 39.84 3.41
3 4 9.399403 GAAATGTTTGAAGGTTTCATTCTACTC 57.601 33.333 0.00 0.00 39.84 2.59
4 5 9.136323 AGAAATGTTTGAAGGTTTCATTCTACT 57.864 29.630 3.90 0.00 39.84 2.57
5 6 9.750125 AAGAAATGTTTGAAGGTTTCATTCTAC 57.250 29.630 5.52 0.00 39.84 2.59
6 7 9.748708 CAAGAAATGTTTGAAGGTTTCATTCTA 57.251 29.630 5.52 0.00 39.84 2.10
47 48 5.991933 TGCTAGTCAATTGGCCAAATAAA 57.008 34.783 24.71 5.65 0.00 1.40
51 52 4.679373 TTTTGCTAGTCAATTGGCCAAA 57.321 36.364 24.71 2.49 34.12 3.28
52 53 4.040217 ACATTTTGCTAGTCAATTGGCCAA 59.960 37.500 23.00 23.00 34.12 4.52
53 54 3.577848 ACATTTTGCTAGTCAATTGGCCA 59.422 39.130 0.00 0.00 34.12 5.36
62 63 3.424962 GCGAGTCCAACATTTTGCTAGTC 60.425 47.826 0.00 0.00 0.00 2.59
65 66 2.483877 CAGCGAGTCCAACATTTTGCTA 59.516 45.455 0.00 0.00 0.00 3.49
97 98 6.935208 ACTAAACCTTTCTATCACTGGTGTTC 59.065 38.462 0.53 0.00 0.00 3.18
105 106 9.880157 TGTTACCATACTAAACCTTTCTATCAC 57.120 33.333 0.00 0.00 0.00 3.06
109 110 9.049050 TCCATGTTACCATACTAAACCTTTCTA 57.951 33.333 0.00 0.00 0.00 2.10
137 138 9.833481 ACAAAAGCTTGAATCCCCAAGGATAGT 62.833 40.741 0.00 0.00 42.94 2.12
142 143 2.634453 ACAAAAGCTTGAATCCCCAAGG 59.366 45.455 0.00 0.00 42.73 3.61
176 200 3.497262 GCGGTTGCCCTAGTAATTATGAC 59.503 47.826 0.00 0.00 33.98 3.06
179 203 2.549349 CCGCGGTTGCCCTAGTAATTAT 60.549 50.000 19.50 0.00 38.08 1.28
192 216 3.709880 TATCTGTCGCCCGCGGTTG 62.710 63.158 26.12 16.23 40.25 3.77
197 221 3.501458 GACCCTATCTGTCGCCCGC 62.501 68.421 0.00 0.00 0.00 6.13
198 222 1.392710 AAGACCCTATCTGTCGCCCG 61.393 60.000 0.00 0.00 37.88 6.13
199 223 0.389757 GAAGACCCTATCTGTCGCCC 59.610 60.000 0.00 0.00 37.88 6.13
201 225 0.030908 CCGAAGACCCTATCTGTCGC 59.969 60.000 0.00 0.00 37.88 5.19
202 226 1.390565 ACCGAAGACCCTATCTGTCG 58.609 55.000 0.00 0.00 37.88 4.35
214 238 1.760613 AGTCAGTTGTCCAACCGAAGA 59.239 47.619 6.55 0.00 42.06 2.87
218 242 1.867233 CAAGAGTCAGTTGTCCAACCG 59.133 52.381 6.55 0.00 42.06 4.44
224 248 2.740981 CCTGCATCAAGAGTCAGTTGTC 59.259 50.000 0.00 0.00 0.00 3.18
235 259 1.671328 CAGCACTCATCCTGCATCAAG 59.329 52.381 0.00 0.00 37.08 3.02
242 266 2.289257 TGTCTTGACAGCACTCATCCTG 60.289 50.000 0.00 0.00 35.26 3.86
246 270 6.127814 CCAAATTATGTCTTGACAGCACTCAT 60.128 38.462 9.39 0.00 0.00 2.90
249 273 5.182001 GTCCAAATTATGTCTTGACAGCACT 59.818 40.000 9.39 0.00 0.00 4.40
254 278 6.150976 GGATGTGTCCAAATTATGTCTTGACA 59.849 38.462 5.89 5.89 44.42 3.58
280 305 0.526211 ACTGCTACGCATCGAAGTGA 59.474 50.000 8.38 0.00 38.13 3.41
286 311 2.196749 AGATTTGACTGCTACGCATCG 58.803 47.619 0.00 0.00 38.13 3.84
290 315 3.242543 CCATCAAGATTTGACTGCTACGC 60.243 47.826 0.00 0.00 43.48 4.42
292 317 5.819379 TCATCCATCAAGATTTGACTGCTAC 59.181 40.000 0.00 0.00 43.48 3.58
341 366 9.895138 CCATATATTTGTGTCAGGATCATCATA 57.105 33.333 0.00 0.00 0.00 2.15
374 399 6.747414 AGGCATGTGTATAAGGACTTATGA 57.253 37.500 13.41 0.00 36.52 2.15
379 404 7.834181 ACAAAAATAGGCATGTGTATAAGGACT 59.166 33.333 0.00 0.00 0.00 3.85
422 447 4.060038 ACGGATCGTAAATCAAGCTGAT 57.940 40.909 0.00 0.00 38.73 2.90
425 450 3.857052 TGAACGGATCGTAAATCAAGCT 58.143 40.909 0.00 0.00 39.99 3.74
436 461 8.841444 ATTAAATTTCATCTTTGAACGGATCG 57.159 30.769 0.00 0.00 41.50 3.69
465 490 6.387041 AGGGTCTTAAACAAGTTTTGCTAC 57.613 37.500 3.25 0.00 34.23 3.58
497 522 1.966451 CCACGAAAGGACAGTGCCC 60.966 63.158 0.00 0.00 34.79 5.36
505 530 2.564062 AGTTATCGAACCCACGAAAGGA 59.436 45.455 0.00 0.00 45.16 3.36
512 537 4.451629 TTCTCTGAGTTATCGAACCCAC 57.548 45.455 4.32 0.00 36.08 4.61
538 580 8.713271 GGAAATATAACAGGAATGAATCTCGTC 58.287 37.037 0.00 0.00 0.00 4.20
544 586 9.645128 TGACATGGAAATATAACAGGAATGAAT 57.355 29.630 0.00 0.00 0.00 2.57
545 587 8.902806 GTGACATGGAAATATAACAGGAATGAA 58.097 33.333 0.00 0.00 0.00 2.57
551 593 7.875041 CCTCTAGTGACATGGAAATATAACAGG 59.125 40.741 0.00 0.00 0.00 4.00
555 597 9.213777 AGTTCCTCTAGTGACATGGAAATATAA 57.786 33.333 0.00 0.00 38.35 0.98
557 599 7.682787 AGTTCCTCTAGTGACATGGAAATAT 57.317 36.000 0.00 0.00 38.35 1.28
564 606 6.983307 CCTTGATTAGTTCCTCTAGTGACATG 59.017 42.308 0.00 0.00 0.00 3.21
565 607 6.670027 ACCTTGATTAGTTCCTCTAGTGACAT 59.330 38.462 0.00 0.00 0.00 3.06
566 608 6.017192 ACCTTGATTAGTTCCTCTAGTGACA 58.983 40.000 0.00 0.00 0.00 3.58
571 613 5.606348 AGCACCTTGATTAGTTCCTCTAG 57.394 43.478 0.00 0.00 0.00 2.43
574 616 4.327680 ACAAGCACCTTGATTAGTTCCTC 58.672 43.478 11.56 0.00 43.42 3.71
577 619 7.435068 TTTCTACAAGCACCTTGATTAGTTC 57.565 36.000 11.56 0.00 43.42 3.01
580 622 8.948631 TCTATTTCTACAAGCACCTTGATTAG 57.051 34.615 11.56 4.60 43.42 1.73
590 632 4.935205 ACGCACATTCTATTTCTACAAGCA 59.065 37.500 0.00 0.00 0.00 3.91
607 649 4.127907 TCACCTTTGTAAATGTACGCACA 58.872 39.130 0.00 0.00 39.52 4.57
610 652 4.378046 CCACTCACCTTTGTAAATGTACGC 60.378 45.833 0.00 0.00 32.40 4.42
611 653 4.378046 GCCACTCACCTTTGTAAATGTACG 60.378 45.833 0.00 0.00 32.40 3.67
612 654 4.082949 GGCCACTCACCTTTGTAAATGTAC 60.083 45.833 0.00 0.00 0.00 2.90
613 655 4.076394 GGCCACTCACCTTTGTAAATGTA 58.924 43.478 0.00 0.00 0.00 2.29
614 656 2.890945 GGCCACTCACCTTTGTAAATGT 59.109 45.455 0.00 0.00 0.00 2.71
615 657 2.095263 CGGCCACTCACCTTTGTAAATG 60.095 50.000 2.24 0.00 0.00 2.32
616 658 2.159382 CGGCCACTCACCTTTGTAAAT 58.841 47.619 2.24 0.00 0.00 1.40
617 659 1.141254 TCGGCCACTCACCTTTGTAAA 59.859 47.619 2.24 0.00 0.00 2.01
618 660 0.759959 TCGGCCACTCACCTTTGTAA 59.240 50.000 2.24 0.00 0.00 2.41
619 661 0.320374 CTCGGCCACTCACCTTTGTA 59.680 55.000 2.24 0.00 0.00 2.41
620 662 1.071471 CTCGGCCACTCACCTTTGT 59.929 57.895 2.24 0.00 0.00 2.83
621 663 1.071471 ACTCGGCCACTCACCTTTG 59.929 57.895 2.24 0.00 0.00 2.77
622 664 1.071471 CACTCGGCCACTCACCTTT 59.929 57.895 2.24 0.00 0.00 3.11
623 665 1.696097 AACACTCGGCCACTCACCTT 61.696 55.000 2.24 0.00 0.00 3.50
624 666 1.696097 AAACACTCGGCCACTCACCT 61.696 55.000 2.24 0.00 0.00 4.00
625 667 1.227853 AAACACTCGGCCACTCACC 60.228 57.895 2.24 0.00 0.00 4.02
626 668 1.941812 CAAACACTCGGCCACTCAC 59.058 57.895 2.24 0.00 0.00 3.51
627 669 1.891919 GCAAACACTCGGCCACTCA 60.892 57.895 2.24 0.00 0.00 3.41
628 670 1.237285 ATGCAAACACTCGGCCACTC 61.237 55.000 2.24 0.00 0.00 3.51
630 672 1.094785 ATATGCAAACACTCGGCCAC 58.905 50.000 2.24 0.00 0.00 5.01
634 676 3.932710 ACAGTACATATGCAAACACTCGG 59.067 43.478 1.58 0.00 0.00 4.63
635 677 4.388773 ACACAGTACATATGCAAACACTCG 59.611 41.667 1.58 0.00 0.00 4.18
639 681 3.817647 TGCACACAGTACATATGCAAACA 59.182 39.130 1.58 0.00 43.00 2.83
669 711 6.478016 TCATCTGTGAAAGCGATTATCTTCTG 59.522 38.462 0.00 0.00 0.00 3.02
670 712 6.577103 TCATCTGTGAAAGCGATTATCTTCT 58.423 36.000 0.00 0.00 0.00 2.85
671 713 6.834959 TCATCTGTGAAAGCGATTATCTTC 57.165 37.500 0.00 0.00 0.00 2.87
758 801 1.303888 ATTCCAGCACCAGCACCAG 60.304 57.895 0.00 0.00 45.49 4.00
759 802 1.604308 CATTCCAGCACCAGCACCA 60.604 57.895 0.00 0.00 45.49 4.17
760 803 0.895100 TTCATTCCAGCACCAGCACC 60.895 55.000 0.00 0.00 45.49 5.01
761 804 1.180029 ATTCATTCCAGCACCAGCAC 58.820 50.000 0.00 0.00 45.49 4.40
824 871 1.571460 GTCGTTGGTTGCTGAGCAG 59.429 57.895 7.39 0.00 40.61 4.24
831 878 1.792118 GAGGGTTGGTCGTTGGTTGC 61.792 60.000 0.00 0.00 0.00 4.17
893 943 2.493973 GAGCAGAGCAGGAGTCGG 59.506 66.667 0.00 0.00 0.00 4.79
1077 1133 2.057922 ACCAGTCCCTTGATGTTGTCT 58.942 47.619 0.00 0.00 0.00 3.41
1092 1148 2.673523 GAGATGGCCAGCACCAGT 59.326 61.111 25.38 0.31 44.71 4.00
1212 1268 2.039137 ACGAGGGAGGAGGGGAAC 59.961 66.667 0.00 0.00 0.00 3.62
1266 1322 2.894765 GGTGAATCGGGGGAAAAAGAAA 59.105 45.455 0.00 0.00 0.00 2.52
1304 1360 2.167075 GGGGATGACATTTTTGAGCAGG 59.833 50.000 0.00 0.00 0.00 4.85
1309 1370 5.543405 ACTGAAATGGGGATGACATTTTTGA 59.457 36.000 5.06 0.00 45.60 2.69
1318 1379 3.010027 TGCTAACACTGAAATGGGGATGA 59.990 43.478 0.00 0.00 0.00 2.92
1338 1399 1.590932 CATCAGGCAGGTGAGTATGC 58.409 55.000 0.00 0.00 41.80 3.14
1365 1572 9.905713 AAGTAACTCCATTTCTGAATATAAGCA 57.094 29.630 0.00 0.00 0.00 3.91
1371 1578 9.871238 GACAGTAAGTAACTCCATTTCTGAATA 57.129 33.333 0.00 0.00 35.76 1.75
1372 1579 8.598041 AGACAGTAAGTAACTCCATTTCTGAAT 58.402 33.333 0.00 0.00 35.76 2.57
1373 1580 7.872993 CAGACAGTAAGTAACTCCATTTCTGAA 59.127 37.037 0.00 0.00 35.76 3.02
1375 1582 7.378966 TCAGACAGTAAGTAACTCCATTTCTG 58.621 38.462 0.00 0.00 35.76 3.02
1376 1583 7.540474 TCAGACAGTAAGTAACTCCATTTCT 57.460 36.000 0.00 0.00 35.76 2.52
1377 1584 8.660373 CAATCAGACAGTAAGTAACTCCATTTC 58.340 37.037 0.00 0.00 35.76 2.17
1417 1628 1.490693 CTGCGGTCGACATGCCATAC 61.491 60.000 23.80 2.34 0.00 2.39
1424 1635 1.544691 AGTCTAAACTGCGGTCGACAT 59.455 47.619 18.91 0.00 33.32 3.06
1446 1657 7.095607 GCGATTAACACTGGAAGGACATAATAG 60.096 40.741 0.00 0.00 39.30 1.73
1485 1706 3.129113 TGATGCATGAATTACAGTGTGGC 59.871 43.478 2.46 0.00 0.00 5.01
1516 1737 4.262592 GCAGGAAGATCACAAACCCAATTT 60.263 41.667 0.00 0.00 0.00 1.82
1607 1837 1.140312 TGGATTAGCAGCTTAGGGGG 58.860 55.000 0.00 0.00 0.00 5.40
1608 1838 2.373169 TCATGGATTAGCAGCTTAGGGG 59.627 50.000 0.00 0.00 0.00 4.79
1609 1839 3.406764 GTCATGGATTAGCAGCTTAGGG 58.593 50.000 0.00 0.00 0.00 3.53
1610 1840 3.181451 TGGTCATGGATTAGCAGCTTAGG 60.181 47.826 0.00 0.00 0.00 2.69
1611 1841 4.077300 TGGTCATGGATTAGCAGCTTAG 57.923 45.455 0.00 0.00 0.00 2.18
1612 1842 4.712051 ATGGTCATGGATTAGCAGCTTA 57.288 40.909 0.00 0.00 0.00 3.09
1613 1843 3.589951 ATGGTCATGGATTAGCAGCTT 57.410 42.857 0.00 0.00 0.00 3.74
1614 1844 4.923516 ATATGGTCATGGATTAGCAGCT 57.076 40.909 0.00 0.00 0.00 4.24
1615 1845 4.568359 CGTATATGGTCATGGATTAGCAGC 59.432 45.833 0.00 0.00 0.00 5.25
1616 1846 4.568359 GCGTATATGGTCATGGATTAGCAG 59.432 45.833 0.00 0.00 0.00 4.24
1617 1847 4.020662 TGCGTATATGGTCATGGATTAGCA 60.021 41.667 0.00 0.00 0.00 3.49
1618 1848 4.503910 TGCGTATATGGTCATGGATTAGC 58.496 43.478 0.00 0.00 0.00 3.09
1619 1849 6.091305 CAGTTGCGTATATGGTCATGGATTAG 59.909 42.308 0.00 0.00 0.00 1.73
1620 1850 5.931724 CAGTTGCGTATATGGTCATGGATTA 59.068 40.000 0.00 0.00 0.00 1.75
1621 1851 4.756642 CAGTTGCGTATATGGTCATGGATT 59.243 41.667 0.00 0.00 0.00 3.01
1622 1852 4.202357 ACAGTTGCGTATATGGTCATGGAT 60.202 41.667 0.00 0.00 0.00 3.41
1623 1853 3.133901 ACAGTTGCGTATATGGTCATGGA 59.866 43.478 0.00 0.00 0.00 3.41
1624 1854 3.466836 ACAGTTGCGTATATGGTCATGG 58.533 45.455 0.00 0.00 0.00 3.66
1625 1855 4.119136 TGACAGTTGCGTATATGGTCATG 58.881 43.478 0.00 0.00 0.00 3.07
1626 1856 4.400529 TGACAGTTGCGTATATGGTCAT 57.599 40.909 0.00 0.00 0.00 3.06
1627 1857 3.878160 TGACAGTTGCGTATATGGTCA 57.122 42.857 0.00 0.00 0.00 4.02
1628 1858 6.390721 AGATATGACAGTTGCGTATATGGTC 58.609 40.000 0.00 0.00 0.00 4.02
1629 1859 6.346477 AGATATGACAGTTGCGTATATGGT 57.654 37.500 0.00 0.00 0.00 3.55
1630 1860 8.757164 TTAAGATATGACAGTTGCGTATATGG 57.243 34.615 0.00 0.00 0.00 2.74
1631 1861 9.411801 ACTTAAGATATGACAGTTGCGTATATG 57.588 33.333 10.09 0.00 0.00 1.78
1632 1862 9.627395 GACTTAAGATATGACAGTTGCGTATAT 57.373 33.333 10.09 0.00 0.00 0.86
1633 1863 8.847196 AGACTTAAGATATGACAGTTGCGTATA 58.153 33.333 10.09 0.00 0.00 1.47
1634 1864 7.717568 AGACTTAAGATATGACAGTTGCGTAT 58.282 34.615 10.09 0.00 0.00 3.06
1635 1865 7.096884 AGACTTAAGATATGACAGTTGCGTA 57.903 36.000 10.09 0.00 0.00 4.42
1636 1866 5.967088 AGACTTAAGATATGACAGTTGCGT 58.033 37.500 10.09 0.00 0.00 5.24
1637 1867 6.311445 ACAAGACTTAAGATATGACAGTTGCG 59.689 38.462 10.09 0.00 0.00 4.85
1638 1868 7.459486 CACAAGACTTAAGATATGACAGTTGC 58.541 38.462 10.09 0.00 0.00 4.17
1678 1908 8.248945 GGAGCATCAGTAGTTTAGTACAGTTAA 58.751 37.037 0.00 0.00 36.25 2.01
1724 1954 8.524487 AGAGGCTCATATAAGTAAGAATAACCG 58.476 37.037 18.26 0.00 0.00 4.44
1730 1960 7.987458 CACCAAAGAGGCTCATATAAGTAAGAA 59.013 37.037 18.26 0.00 43.14 2.52
1736 1966 4.141390 ACCCACCAAAGAGGCTCATATAAG 60.141 45.833 18.26 2.61 43.14 1.73
1782 2016 4.274950 ACAGTAGAAGATAGAGAAGAGCGC 59.725 45.833 0.00 0.00 0.00 5.92
1819 2119 7.836479 ACAGGATAAGTTGAGGTACCTATAC 57.164 40.000 16.29 15.52 0.00 1.47
1820 2120 8.730948 AGTACAGGATAAGTTGAGGTACCTATA 58.269 37.037 16.29 4.07 32.25 1.31
1846 2146 6.489700 TGCAAAGGAATTCAGAAATGTAGACA 59.510 34.615 7.93 0.00 0.00 3.41
1847 2147 6.913170 TGCAAAGGAATTCAGAAATGTAGAC 58.087 36.000 7.93 0.00 0.00 2.59
1859 2159 3.733443 ACAACCACTGCAAAGGAATTC 57.267 42.857 10.83 0.00 0.00 2.17
1983 2283 5.500234 TGAAACACAGGAAGGAAGGATATG 58.500 41.667 0.00 0.00 0.00 1.78
2026 2326 6.673537 ACAAACCCCCAGATTAATGATGAAAT 59.326 34.615 0.00 0.00 0.00 2.17
2043 2343 2.093711 ACTGCAAGACAAAACAAACCCC 60.094 45.455 0.00 0.00 37.43 4.95
2044 2344 2.929398 CACTGCAAGACAAAACAAACCC 59.071 45.455 0.00 0.00 37.43 4.11
2045 2345 2.348362 GCACTGCAAGACAAAACAAACC 59.652 45.455 0.00 0.00 37.43 3.27
2046 2346 2.027926 CGCACTGCAAGACAAAACAAAC 59.972 45.455 1.11 0.00 37.43 2.93
2047 2347 2.257894 CGCACTGCAAGACAAAACAAA 58.742 42.857 1.11 0.00 37.43 2.83
2048 2348 1.468908 CCGCACTGCAAGACAAAACAA 60.469 47.619 1.11 0.00 37.43 2.83
2049 2349 0.100325 CCGCACTGCAAGACAAAACA 59.900 50.000 1.11 0.00 37.43 2.83
2050 2350 0.100503 ACCGCACTGCAAGACAAAAC 59.899 50.000 1.11 0.00 37.43 2.43
2051 2351 1.332375 GTACCGCACTGCAAGACAAAA 59.668 47.619 1.11 0.00 37.43 2.44
2052 2352 0.941542 GTACCGCACTGCAAGACAAA 59.058 50.000 1.11 0.00 37.43 2.83
2053 2353 0.105964 AGTACCGCACTGCAAGACAA 59.894 50.000 1.11 0.00 35.62 3.18
2054 2354 0.105964 AAGTACCGCACTGCAAGACA 59.894 50.000 1.11 0.00 37.63 3.41
2055 2355 0.512952 CAAGTACCGCACTGCAAGAC 59.487 55.000 1.11 0.00 37.63 3.01
2056 2356 1.227999 GCAAGTACCGCACTGCAAGA 61.228 55.000 1.11 0.00 37.63 3.02
2057 2357 1.207593 GCAAGTACCGCACTGCAAG 59.792 57.895 1.11 0.00 37.63 4.01
2058 2358 1.524849 TGCAAGTACCGCACTGCAA 60.525 52.632 3.53 0.00 37.93 4.08
2067 2367 0.165944 GCATGACGTGTGCAAGTACC 59.834 55.000 15.47 0.00 42.08 3.34
2079 2379 1.706301 CTTCTCACGCAGCATGACG 59.294 57.895 0.00 0.00 39.69 4.35
2082 2382 1.424240 CAGCTTCTCACGCAGCATG 59.576 57.895 0.00 0.00 38.61 4.06
2139 2439 3.458189 GAAGACAATGGTGGTAGATCCG 58.542 50.000 0.00 0.00 39.52 4.18
2145 2445 2.620367 GGCATGGAAGACAATGGTGGTA 60.620 50.000 0.00 0.00 0.00 3.25
2158 2458 2.045045 CTCTTGCGGGGCATGGAA 60.045 61.111 0.00 0.00 38.76 3.53
2276 2589 3.496884 GCTGTTAATCACGGTGAAGTTGA 59.503 43.478 15.72 0.00 33.70 3.18
2286 2599 3.858040 GCACTCGCTGTTAATCACG 57.142 52.632 0.00 0.00 34.30 4.35
2393 2706 2.831526 GACATGGGTTTGGCCATAAAGT 59.168 45.455 6.09 0.00 39.65 2.66
2435 2748 2.943690 CGAGATGGAACCTACGAGAGAA 59.056 50.000 0.00 0.00 0.00 2.87
2464 2777 4.338118 GGTCAGAGATACAGAACTGGAGAG 59.662 50.000 6.76 0.00 34.19 3.20
2466 2779 3.383185 GGGTCAGAGATACAGAACTGGAG 59.617 52.174 6.76 0.00 34.19 3.86
2467 2780 3.011821 AGGGTCAGAGATACAGAACTGGA 59.988 47.826 6.76 0.00 34.19 3.86
2468 2781 3.131933 CAGGGTCAGAGATACAGAACTGG 59.868 52.174 6.76 0.00 34.19 4.00
2470 2783 4.054359 ACAGGGTCAGAGATACAGAACT 57.946 45.455 0.00 0.00 0.00 3.01
2471 2784 5.830991 AGATACAGGGTCAGAGATACAGAAC 59.169 44.000 0.00 0.00 0.00 3.01
2473 2786 5.654901 AGATACAGGGTCAGAGATACAGA 57.345 43.478 0.00 0.00 0.00 3.41
2474 2787 5.708230 GGTAGATACAGGGTCAGAGATACAG 59.292 48.000 0.00 0.00 0.00 2.74
2476 2789 4.696402 CGGTAGATACAGGGTCAGAGATAC 59.304 50.000 0.00 0.00 0.00 2.24
2478 2791 3.138653 ACGGTAGATACAGGGTCAGAGAT 59.861 47.826 0.00 0.00 0.00 2.75
2479 2792 2.508716 ACGGTAGATACAGGGTCAGAGA 59.491 50.000 0.00 0.00 0.00 3.10
2480 2793 2.933573 ACGGTAGATACAGGGTCAGAG 58.066 52.381 0.00 0.00 0.00 3.35
2481 2794 3.053842 AGAACGGTAGATACAGGGTCAGA 60.054 47.826 0.00 0.00 0.00 3.27
2482 2795 3.288964 AGAACGGTAGATACAGGGTCAG 58.711 50.000 0.00 0.00 0.00 3.51
2483 2796 3.053842 AGAGAACGGTAGATACAGGGTCA 60.054 47.826 0.00 0.00 0.00 4.02
2484 2797 3.553904 AGAGAACGGTAGATACAGGGTC 58.446 50.000 0.00 0.00 0.00 4.46
2485 2798 3.666345 AGAGAACGGTAGATACAGGGT 57.334 47.619 0.00 0.00 0.00 4.34
2486 2799 4.716794 ACTAGAGAACGGTAGATACAGGG 58.283 47.826 0.00 0.00 0.00 4.45
2487 2800 4.448395 CGACTAGAGAACGGTAGATACAGG 59.552 50.000 0.00 0.00 0.00 4.00
2488 2801 4.448395 CCGACTAGAGAACGGTAGATACAG 59.552 50.000 0.00 0.00 41.47 2.74
2510 2823 3.540744 CGAACGCGTTCACACAATATACC 60.541 47.826 40.99 18.16 39.46 2.73
2766 3079 7.548075 CGTCCTTGGTTTATATCTTGTACAGTT 59.452 37.037 0.00 0.00 0.00 3.16
2791 3142 3.194968 TGAGCTAAAAGTTACTCCCTCCG 59.805 47.826 0.00 0.00 0.00 4.63
2792 3143 4.760878 CTGAGCTAAAAGTTACTCCCTCC 58.239 47.826 0.00 0.00 0.00 4.30
2793 3144 4.185394 GCTGAGCTAAAAGTTACTCCCTC 58.815 47.826 0.00 0.00 0.00 4.30
2795 3146 3.939066 TGCTGAGCTAAAAGTTACTCCC 58.061 45.455 5.83 0.00 0.00 4.30
2798 3149 5.130350 TGGTTTGCTGAGCTAAAAGTTACT 58.870 37.500 5.83 0.00 0.00 2.24
2799 3150 5.432885 TGGTTTGCTGAGCTAAAAGTTAC 57.567 39.130 5.83 0.00 0.00 2.50
2803 3355 6.441093 TCATATGGTTTGCTGAGCTAAAAG 57.559 37.500 5.83 0.00 0.00 2.27
2820 3372 9.683069 GTTAGGAAAGTAATGCCATTTCATATG 57.317 33.333 0.00 0.00 35.18 1.78
2821 3373 8.860088 GGTTAGGAAAGTAATGCCATTTCATAT 58.140 33.333 0.00 0.00 35.18 1.78
2832 3384 6.381801 CAACTGCTTGGTTAGGAAAGTAATG 58.618 40.000 0.00 0.00 0.00 1.90
2896 3450 1.902556 GAGGGCCTGCAATGCATTT 59.097 52.632 12.95 0.00 38.13 2.32
2914 3468 3.878086 ACTGCTGTGTTAAATGTGTCG 57.122 42.857 0.00 0.00 0.00 4.35
2974 3528 7.791029 TGAACATAATCACACTAGCCAAGATA 58.209 34.615 0.00 0.00 0.00 1.98
3005 3559 5.617187 GCTTAAGCAATTGAATCATCGTACG 59.383 40.000 22.59 9.53 41.59 3.67
3006 3560 6.719365 AGCTTAAGCAATTGAATCATCGTAC 58.281 36.000 28.39 0.00 45.16 3.67
3007 3561 6.925610 AGCTTAAGCAATTGAATCATCGTA 57.074 33.333 28.39 0.00 45.16 3.43
3008 3562 5.824904 AGCTTAAGCAATTGAATCATCGT 57.175 34.783 28.39 0.11 45.16 3.73
3009 3563 8.288208 AGAATAGCTTAAGCAATTGAATCATCG 58.712 33.333 28.39 0.00 45.16 3.84
3018 3572 9.987272 AGAAACAAAAGAATAGCTTAAGCAATT 57.013 25.926 28.39 11.37 45.16 2.32
3034 3588 6.018507 CCATGAAAGGCAGAAAGAAACAAAAG 60.019 38.462 0.00 0.00 0.00 2.27
3050 3604 5.484715 ACTTGAATGAAATGCCATGAAAGG 58.515 37.500 0.00 0.00 30.33 3.11
3066 3620 9.388506 CAACTTCTTGATGGATACTACTTGAAT 57.611 33.333 0.00 0.00 37.61 2.57
3071 3625 7.418025 GGCTACAACTTCTTGATGGATACTACT 60.418 40.741 0.00 0.00 37.61 2.57
3072 3626 6.702282 GGCTACAACTTCTTGATGGATACTAC 59.298 42.308 0.00 0.00 37.61 2.73
3078 3632 3.327757 AGTGGCTACAACTTCTTGATGGA 59.672 43.478 2.02 0.00 0.00 3.41
3079 3633 3.679389 AGTGGCTACAACTTCTTGATGG 58.321 45.455 2.02 0.00 0.00 3.51
3080 3634 4.573900 AGAGTGGCTACAACTTCTTGATG 58.426 43.478 2.02 0.00 0.00 3.07
3092 3653 1.679153 GTAGCTGGAGAGAGTGGCTAC 59.321 57.143 0.00 7.48 45.03 3.58
3099 3660 3.540314 AGCATTTGTAGCTGGAGAGAG 57.460 47.619 0.00 0.00 41.61 3.20
3112 3673 5.392380 GGGATGTTCTGACTACAAGCATTTG 60.392 44.000 0.00 0.00 40.24 2.32
3135 3697 2.107750 ATGCGAGGCGATGACTGG 59.892 61.111 0.00 0.00 0.00 4.00
3140 3702 0.659427 AAATGTCATGCGAGGCGATG 59.341 50.000 0.00 0.00 0.00 3.84
3141 3703 0.940126 GAAATGTCATGCGAGGCGAT 59.060 50.000 0.00 0.00 0.00 4.58
3143 3705 0.027194 CTGAAATGTCATGCGAGGCG 59.973 55.000 0.00 0.00 31.85 5.52
3146 3708 4.151258 ACAAACTGAAATGTCATGCGAG 57.849 40.909 0.00 0.00 31.85 5.03
3154 3716 5.699001 TGCACGTAGATACAAACTGAAATGT 59.301 36.000 0.00 0.00 0.00 2.71
3162 3724 3.612860 CAGTCCTGCACGTAGATACAAAC 59.387 47.826 0.00 0.00 0.00 2.93
3165 3727 1.749063 CCAGTCCTGCACGTAGATACA 59.251 52.381 0.00 0.00 0.00 2.29
3166 3728 1.067212 CCCAGTCCTGCACGTAGATAC 59.933 57.143 0.00 0.00 0.00 2.24
3168 3730 0.324368 TCCCAGTCCTGCACGTAGAT 60.324 55.000 0.00 0.00 0.00 1.98
3171 3733 2.280552 GGTCCCAGTCCTGCACGTA 61.281 63.158 0.00 0.00 0.00 3.57
3215 3780 0.037326 TCACGAAGCCACACATCTCC 60.037 55.000 0.00 0.00 0.00 3.71
3298 3863 3.633986 AGAAAAAGGTCAGTTTGGAGCAG 59.366 43.478 0.00 0.00 37.74 4.24
3307 3872 4.645136 GGAAGGAACAAGAAAAAGGTCAGT 59.355 41.667 0.00 0.00 0.00 3.41
3313 3878 5.351458 CACCAAGGAAGGAACAAGAAAAAG 58.649 41.667 0.00 0.00 0.00 2.27
3385 3950 3.425162 AGGCGGAATGAAGAAGAGTTT 57.575 42.857 0.00 0.00 0.00 2.66
3403 3968 1.134946 GCCGATGAAATGGTTGGAAGG 59.865 52.381 0.00 0.00 0.00 3.46
3451 4016 1.219393 GAGAGGAACCCCTTCGCTG 59.781 63.158 0.00 0.00 44.53 5.18
3532 4097 3.244770 TGAGCCCTAACTCGGTGAAAATT 60.245 43.478 0.00 0.00 39.68 1.82
3615 4180 1.303561 TCAGCCACAATGCTCCCAC 60.304 57.895 0.00 0.00 40.32 4.61
3656 4221 1.463444 GTGCTAAGCCAACAACCTACG 59.537 52.381 0.00 0.00 0.00 3.51
3657 4222 1.810755 GGTGCTAAGCCAACAACCTAC 59.189 52.381 0.00 0.00 0.00 3.18
3658 4223 1.609580 CGGTGCTAAGCCAACAACCTA 60.610 52.381 0.00 0.00 0.00 3.08
3659 4224 0.889186 CGGTGCTAAGCCAACAACCT 60.889 55.000 0.00 0.00 0.00 3.50
3667 4232 2.125106 CCACTCCGGTGCTAAGCC 60.125 66.667 0.00 0.00 41.75 4.35
3670 4235 0.834687 AACTCCCACTCCGGTGCTAA 60.835 55.000 0.00 0.00 41.75 3.09
3699 4264 5.210430 TGCTTGATAACCCATCCATTCATT 58.790 37.500 0.00 0.00 32.09 2.57
3700 4265 4.806892 TGCTTGATAACCCATCCATTCAT 58.193 39.130 0.00 0.00 32.09 2.57
3701 4266 4.209538 CTGCTTGATAACCCATCCATTCA 58.790 43.478 0.00 0.00 32.09 2.57
3702 4267 3.005155 GCTGCTTGATAACCCATCCATTC 59.995 47.826 0.00 0.00 32.09 2.67
3724 4297 6.567769 AAACTGTGTTAAAATTTCAGCACG 57.432 33.333 4.13 2.35 0.00 5.34
3741 4314 4.054780 TCTCAACAGCGAAGTAAACTGT 57.945 40.909 0.00 0.00 46.27 3.55
3742 4315 4.143030 CCATCTCAACAGCGAAGTAAACTG 60.143 45.833 0.00 0.00 37.45 3.16
3743 4316 3.997021 CCATCTCAACAGCGAAGTAAACT 59.003 43.478 0.00 0.00 0.00 2.66
3744 4317 3.746492 ACCATCTCAACAGCGAAGTAAAC 59.254 43.478 0.00 0.00 0.00 2.01
3745 4318 4.002906 ACCATCTCAACAGCGAAGTAAA 57.997 40.909 0.00 0.00 0.00 2.01
3746 4319 3.678056 ACCATCTCAACAGCGAAGTAA 57.322 42.857 0.00 0.00 0.00 2.24
3747 4320 3.678056 AACCATCTCAACAGCGAAGTA 57.322 42.857 0.00 0.00 0.00 2.24
3748 4321 2.550830 AACCATCTCAACAGCGAAGT 57.449 45.000 0.00 0.00 0.00 3.01
3749 4322 3.070018 AGAAACCATCTCAACAGCGAAG 58.930 45.455 0.00 0.00 30.46 3.79
3750 4323 3.126001 AGAAACCATCTCAACAGCGAA 57.874 42.857 0.00 0.00 30.46 4.70
3751 4324 2.839486 AGAAACCATCTCAACAGCGA 57.161 45.000 0.00 0.00 30.46 4.93
3752 4325 2.160417 GGAAGAAACCATCTCAACAGCG 59.840 50.000 0.00 0.00 37.42 5.18
3798 4372 9.740239 ACATTATGAATATTGTGCTGACATTTC 57.260 29.630 0.00 0.00 30.13 2.17
3802 4381 9.926158 AAAAACATTATGAATATTGTGCTGACA 57.074 25.926 0.00 0.00 30.06 3.58
3871 4450 7.040823 AGGCTTTGTTGTGAATTTTTCAAACAA 60.041 29.630 17.11 17.11 42.19 2.83
3875 4454 5.353678 CCAGGCTTTGTTGTGAATTTTTCAA 59.646 36.000 0.00 0.00 42.15 2.69
3926 4506 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3927 4507 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3928 4508 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3929 4509 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3930 4510 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3931 4511 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3947 4527 9.965824 GTCCATTTGAATCTCTAAAAAGACAAA 57.034 29.630 0.00 0.00 30.50 2.83
3948 4528 9.354673 AGTCCATTTGAATCTCTAAAAAGACAA 57.645 29.630 0.00 0.00 30.54 3.18
3949 4529 8.924511 AGTCCATTTGAATCTCTAAAAAGACA 57.075 30.769 0.00 0.00 30.54 3.41
3951 4531 9.449719 GGTAGTCCATTTGAATCTCTAAAAAGA 57.550 33.333 0.00 0.00 0.00 2.52
3952 4532 9.231297 TGGTAGTCCATTTGAATCTCTAAAAAG 57.769 33.333 0.00 0.00 39.03 2.27
3953 4533 9.010029 GTGGTAGTCCATTTGAATCTCTAAAAA 57.990 33.333 0.00 0.00 46.20 1.94
3954 4534 8.160765 TGTGGTAGTCCATTTGAATCTCTAAAA 58.839 33.333 0.00 0.00 46.20 1.52
3955 4535 7.685481 TGTGGTAGTCCATTTGAATCTCTAAA 58.315 34.615 0.00 0.00 46.20 1.85
3956 4536 7.252612 TGTGGTAGTCCATTTGAATCTCTAA 57.747 36.000 0.00 0.00 46.20 2.10
3957 4537 6.867519 TGTGGTAGTCCATTTGAATCTCTA 57.132 37.500 0.00 0.00 46.20 2.43
3958 4538 5.762179 TGTGGTAGTCCATTTGAATCTCT 57.238 39.130 0.00 0.00 46.20 3.10
3959 4539 6.201044 CGTATGTGGTAGTCCATTTGAATCTC 59.799 42.308 0.00 0.00 46.20 2.75
3960 4540 6.049149 CGTATGTGGTAGTCCATTTGAATCT 58.951 40.000 0.00 0.00 46.20 2.40
3961 4541 5.236478 CCGTATGTGGTAGTCCATTTGAATC 59.764 44.000 0.00 0.00 46.20 2.52
3962 4542 5.104693 TCCGTATGTGGTAGTCCATTTGAAT 60.105 40.000 0.00 0.00 46.20 2.57
3963 4543 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
3964 4544 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
3965 4545 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
3966 4546 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
3967 4547 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
3968 4548 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
3969 4549 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
3970 4550 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
3971 4551 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
3972 4552 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
3973 4553 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
3974 4554 8.899771 CATGTCTATATACATCCGTATGTGGTA 58.100 37.037 3.56 0.00 45.99 3.25
3975 4555 7.396339 ACATGTCTATATACATCCGTATGTGGT 59.604 37.037 3.56 0.00 45.99 4.16
3976 4556 7.772166 ACATGTCTATATACATCCGTATGTGG 58.228 38.462 3.56 0.00 45.99 4.17
3977 4557 9.639601 AAACATGTCTATATACATCCGTATGTG 57.360 33.333 3.56 0.00 45.99 3.21
3993 4573 9.856488 GTGAATCTACACTCTAAAACATGTCTA 57.144 33.333 0.00 0.00 37.73 2.59
3994 4574 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
3995 4575 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
4008 4588 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4009 4589 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4010 4590 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4011 4591 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4012 4592 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4013 4593 4.492570 CGTACGGAGCAAAATGAGTGAATC 60.493 45.833 7.57 0.00 0.00 2.52
4014 4594 3.370978 CGTACGGAGCAAAATGAGTGAAT 59.629 43.478 7.57 0.00 0.00 2.57
4015 4595 2.734606 CGTACGGAGCAAAATGAGTGAA 59.265 45.455 7.57 0.00 0.00 3.18
4016 4596 2.288579 ACGTACGGAGCAAAATGAGTGA 60.289 45.455 21.06 0.00 0.00 3.41
4017 4597 2.066262 ACGTACGGAGCAAAATGAGTG 58.934 47.619 21.06 0.00 0.00 3.51
4018 4598 2.450609 ACGTACGGAGCAAAATGAGT 57.549 45.000 21.06 0.00 0.00 3.41
4019 4599 3.508762 ACTACGTACGGAGCAAAATGAG 58.491 45.455 27.33 1.42 0.00 2.90
4020 4600 3.057386 TGACTACGTACGGAGCAAAATGA 60.057 43.478 27.33 0.00 0.00 2.57
4021 4601 3.060363 GTGACTACGTACGGAGCAAAATG 59.940 47.826 27.33 3.03 0.00 2.32
4022 4602 3.057033 AGTGACTACGTACGGAGCAAAAT 60.057 43.478 27.33 7.40 0.00 1.82
4023 4603 2.294233 AGTGACTACGTACGGAGCAAAA 59.706 45.455 27.33 7.64 0.00 2.44
4024 4604 1.881973 AGTGACTACGTACGGAGCAAA 59.118 47.619 27.33 10.27 0.00 3.68
4025 4605 1.527034 AGTGACTACGTACGGAGCAA 58.473 50.000 27.33 12.96 0.00 3.91
4026 4606 1.198408 CAAGTGACTACGTACGGAGCA 59.802 52.381 27.33 21.55 0.00 4.26
4027 4607 1.198637 ACAAGTGACTACGTACGGAGC 59.801 52.381 27.33 19.29 0.00 4.70
4028 4608 3.058708 TCAACAAGTGACTACGTACGGAG 60.059 47.826 25.90 25.90 0.00 4.63
4029 4609 2.877786 TCAACAAGTGACTACGTACGGA 59.122 45.455 21.06 10.81 0.00 4.69
4030 4610 3.272439 TCAACAAGTGACTACGTACGG 57.728 47.619 21.06 5.00 0.00 4.02
4031 4611 5.628193 AGATTTCAACAAGTGACTACGTACG 59.372 40.000 15.01 15.01 35.39 3.67
4032 4612 6.862090 AGAGATTTCAACAAGTGACTACGTAC 59.138 38.462 0.00 0.00 35.39 3.67
4033 4613 6.978338 AGAGATTTCAACAAGTGACTACGTA 58.022 36.000 0.00 0.00 35.39 3.57
4034 4614 5.844004 AGAGATTTCAACAAGTGACTACGT 58.156 37.500 0.00 0.00 35.39 3.57
4035 4615 7.306213 TCTAGAGATTTCAACAAGTGACTACG 58.694 38.462 0.00 0.00 35.39 3.51
4036 4616 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
4037 4617 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
4038 4618 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4039 4619 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
4040 4620 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4041 4621 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4042 4622 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4055 4635 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4056 4636 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4057 4637 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4058 4638 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4059 4639 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4060 4640 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4061 4641 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4062 4642 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4063 4643 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4064 4644 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4065 4645 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4066 4646 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4067 4647 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4068 4648 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4069 4649 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4070 4650 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4071 4651 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4072 4652 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
4073 4653 3.094572 CAAACTACTCCCTCCGTTCCTA 58.905 50.000 0.00 0.00 0.00 2.94
4074 4654 1.900486 CAAACTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
4075 4655 1.622312 ACAAACTACTCCCTCCGTTCC 59.378 52.381 0.00 0.00 0.00 3.62
4076 4656 4.430908 CATACAAACTACTCCCTCCGTTC 58.569 47.826 0.00 0.00 0.00 3.95
4077 4657 3.197116 CCATACAAACTACTCCCTCCGTT 59.803 47.826 0.00 0.00 0.00 4.44
4078 4658 2.764572 CCATACAAACTACTCCCTCCGT 59.235 50.000 0.00 0.00 0.00 4.69
4079 4659 2.483188 GCCATACAAACTACTCCCTCCG 60.483 54.545 0.00 0.00 0.00 4.63
4080 4660 2.772515 AGCCATACAAACTACTCCCTCC 59.227 50.000 0.00 0.00 0.00 4.30
4081 4661 3.451178 TGAGCCATACAAACTACTCCCTC 59.549 47.826 0.00 0.00 0.00 4.30
4082 4662 3.450904 TGAGCCATACAAACTACTCCCT 58.549 45.455 0.00 0.00 0.00 4.20
4083 4663 3.451178 TCTGAGCCATACAAACTACTCCC 59.549 47.826 0.00 0.00 0.00 4.30
4084 4664 4.737855 TCTGAGCCATACAAACTACTCC 57.262 45.455 0.00 0.00 0.00 3.85
4085 4665 5.665459 ACATCTGAGCCATACAAACTACTC 58.335 41.667 0.00 0.00 0.00 2.59
4086 4666 5.683876 ACATCTGAGCCATACAAACTACT 57.316 39.130 0.00 0.00 0.00 2.57
4156 4740 6.018669 GTGTTCTGATATCGATTTTCTCCACC 60.019 42.308 1.71 0.00 0.00 4.61
4168 4752 8.818141 ATAATACAGGTTGTGTTCTGATATCG 57.182 34.615 0.00 0.00 40.94 2.92
4196 4780 4.034510 GCTGTTGATGTAGTGAATAGTGGC 59.965 45.833 0.00 0.00 0.00 5.01
4200 4784 7.492344 TGTGTATGCTGTTGATGTAGTGAATAG 59.508 37.037 0.00 0.00 0.00 1.73
4207 4791 6.035435 GTCTCTTGTGTATGCTGTTGATGTAG 59.965 42.308 0.00 0.00 0.00 2.74
4217 4801 8.478066 TGATATGTTAAGTCTCTTGTGTATGCT 58.522 33.333 0.00 0.00 0.00 3.79
4218 4802 8.648557 TGATATGTTAAGTCTCTTGTGTATGC 57.351 34.615 0.00 0.00 0.00 3.14
4233 4817 7.194112 TCTGTCACCAAGGATGATATGTTAA 57.806 36.000 0.00 0.00 0.00 2.01
4234 4818 6.686378 GCTCTGTCACCAAGGATGATATGTTA 60.686 42.308 0.00 0.00 0.00 2.41
4236 4820 4.444022 GCTCTGTCACCAAGGATGATATGT 60.444 45.833 0.00 0.00 0.00 2.29
4237 4821 4.063689 GCTCTGTCACCAAGGATGATATG 58.936 47.826 0.00 0.00 0.00 1.78
4238 4822 3.972638 AGCTCTGTCACCAAGGATGATAT 59.027 43.478 0.00 0.00 0.00 1.63
4239 4823 3.133542 CAGCTCTGTCACCAAGGATGATA 59.866 47.826 0.00 0.00 0.00 2.15
4242 4826 1.002888 ACAGCTCTGTCACCAAGGATG 59.997 52.381 0.00 0.00 40.24 3.51
4245 4829 2.625737 CATACAGCTCTGTCACCAAGG 58.374 52.381 5.72 0.00 43.74 3.61
4248 4832 3.840831 GCATACAGCTCTGTCACCA 57.159 52.632 5.72 0.00 43.74 4.17
4274 4863 7.385267 TCCTTGCTGCATGTAAATAAATTTGT 58.615 30.769 1.84 0.00 0.00 2.83
4277 4866 6.818142 GGTTCCTTGCTGCATGTAAATAAATT 59.182 34.615 1.84 0.00 0.00 1.82
4284 4873 1.885887 GTGGTTCCTTGCTGCATGTAA 59.114 47.619 1.84 0.00 0.00 2.41
4337 4926 3.557508 GTTTTATTGTGTACCGTGTGCC 58.442 45.455 0.00 0.00 0.00 5.01
4342 4931 5.590104 GGTAACGTTTTATTGTGTACCGT 57.410 39.130 5.91 0.00 0.00 4.83
4359 4948 2.589798 TGTCGAATCCCATCGGTAAC 57.410 50.000 0.00 0.00 42.92 2.50
4366 4955 3.652057 AACCTTGATGTCGAATCCCAT 57.348 42.857 0.00 0.00 0.00 4.00
4368 4957 4.138487 AGTAACCTTGATGTCGAATCCC 57.862 45.455 0.00 0.00 0.00 3.85
4369 4958 6.145338 TCTAGTAACCTTGATGTCGAATCC 57.855 41.667 0.00 0.00 0.00 3.01
4375 4964 6.038997 ACACCTTCTAGTAACCTTGATGTC 57.961 41.667 0.00 0.00 0.00 3.06
4376 4965 7.384477 GTTACACCTTCTAGTAACCTTGATGT 58.616 38.462 0.00 0.00 42.50 3.06
4377 4966 7.829378 GTTACACCTTCTAGTAACCTTGATG 57.171 40.000 0.00 0.00 42.50 3.07
4437 5029 1.278127 TCAGGTGTTAGTTAGGCCTGC 59.722 52.381 17.99 8.43 44.53 4.85
4438 5030 2.301870 TGTCAGGTGTTAGTTAGGCCTG 59.698 50.000 17.99 0.00 45.82 4.85
4439 5031 2.567615 CTGTCAGGTGTTAGTTAGGCCT 59.432 50.000 11.78 11.78 0.00 5.19
4440 5032 2.935676 GCTGTCAGGTGTTAGTTAGGCC 60.936 54.545 0.00 0.00 0.00 5.19
4443 5035 2.996621 GCTGCTGTCAGGTGTTAGTTAG 59.003 50.000 1.14 0.00 40.65 2.34
4461 5053 2.930019 TCACTCACCCCTGGGCTG 60.930 66.667 7.39 4.06 39.32 4.85
4462 5054 2.930562 GTCACTCACCCCTGGGCT 60.931 66.667 7.39 0.00 39.32 5.19
4463 5055 2.829384 TTGTCACTCACCCCTGGGC 61.829 63.158 7.39 0.00 39.32 5.36
4464 5056 1.073199 GTTGTCACTCACCCCTGGG 59.927 63.158 5.50 5.50 42.03 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.