Multiple sequence alignment - TraesCS2A01G556500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G556500 chr2A 100.000 2312 0 0 1 2312 760620850 760623161 0.000000e+00 4270.0
1 TraesCS2A01G556500 chr2A 85.030 167 21 3 1864 2027 773781174 773781009 1.420000e-37 167.0
2 TraesCS2A01G556500 chr2B 87.765 613 60 8 796 1400 773423896 773424501 0.000000e+00 702.0
3 TraesCS2A01G556500 chr2B 91.611 453 28 7 347 794 773423208 773423655 3.260000e-173 617.0
4 TraesCS2A01G556500 chr2B 86.375 389 35 10 1456 1832 773424663 773425045 2.140000e-110 409.0
5 TraesCS2A01G556500 chr2B 84.706 170 19 6 1864 2027 483237937 483237769 1.840000e-36 163.0
6 TraesCS2A01G556500 chr2B 83.929 168 22 4 1863 2028 724738211 724738047 3.080000e-34 156.0
7 TraesCS2A01G556500 chr2B 88.596 114 9 3 171 283 773422961 773423071 4.010000e-28 135.0
8 TraesCS2A01G556500 chr2B 97.872 47 1 0 1 47 773414365 773414411 5.290000e-12 82.4
9 TraesCS2A01G556500 chr2D 93.503 354 23 0 961 1314 630517174 630517527 5.660000e-146 527.0
10 TraesCS2A01G556500 chr2D 88.780 205 15 6 127 328 630471343 630471542 6.380000e-61 244.0
11 TraesCS2A01G556500 chr2D 93.038 158 9 2 400 556 630517015 630517171 1.790000e-56 230.0
12 TraesCS2A01G556500 chr2D 89.231 130 9 3 1468 1593 630517811 630517939 8.550000e-35 158.0
13 TraesCS2A01G556500 chr2D 97.872 47 1 0 1 47 630471255 630471301 5.290000e-12 82.4
14 TraesCS2A01G556500 chr5A 90.964 166 13 2 1864 2027 617216569 617216734 2.990000e-54 222.0
15 TraesCS2A01G556500 chr5B 89.759 166 17 0 2037 2202 697821627 697821462 1.800000e-51 213.0
16 TraesCS2A01G556500 chr5B 85.000 120 13 4 2036 2154 557525240 557525125 1.450000e-22 117.0
17 TraesCS2A01G556500 chr5B 89.247 93 5 5 1862 1950 42163745 42163836 6.750000e-21 111.0
18 TraesCS2A01G556500 chr6A 89.506 162 15 2 2033 2193 370679725 370679885 1.080000e-48 204.0
19 TraesCS2A01G556500 chr6A 83.077 130 8 11 2028 2154 498595006 498595124 3.140000e-19 106.0
20 TraesCS2A01G556500 chr6B 86.391 169 19 3 1864 2028 680967404 680967236 5.070000e-42 182.0
21 TraesCS2A01G556500 chr1B 85.207 169 19 6 1864 2027 503808873 503808706 3.950000e-38 169.0
22 TraesCS2A01G556500 chr1B 88.550 131 9 5 2033 2158 567208138 567208267 1.110000e-33 154.0
23 TraesCS2A01G556500 chr1D 85.235 149 18 4 2033 2177 414696804 414696656 1.430000e-32 150.0
24 TraesCS2A01G556500 chr7B 94.681 94 5 0 2033 2126 665282341 665282434 1.850000e-31 147.0
25 TraesCS2A01G556500 chr7B 91.489 47 4 0 1975 2021 217789972 217789926 5.330000e-07 65.8
26 TraesCS2A01G556500 chr3A 92.784 97 7 0 2033 2129 34544530 34544626 8.610000e-30 141.0
27 TraesCS2A01G556500 chr4D 83.333 138 16 5 1863 1993 503595482 503595619 1.120000e-23 121.0
28 TraesCS2A01G556500 chr3B 83.333 138 16 6 2036 2167 154434390 154434254 1.120000e-23 121.0
29 TraesCS2A01G556500 chr3B 77.778 162 30 5 1871 2027 482343681 482343521 6.800000e-16 95.3
30 TraesCS2A01G556500 chr3B 97.297 37 1 0 1991 2027 798407714 798407750 1.920000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G556500 chr2A 760620850 760623161 2311 False 4270.00 4270 100.00000 1 2312 1 chr2A.!!$F1 2311
1 TraesCS2A01G556500 chr2B 773422961 773425045 2084 False 465.75 702 88.58675 171 1832 4 chr2B.!!$F2 1661
2 TraesCS2A01G556500 chr2D 630517015 630517939 924 False 305.00 527 91.92400 400 1593 3 chr2D.!!$F2 1193

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.037232 AGCGTGGCAAGAGAAGGTAC 60.037 55.0 4.11 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 1921 0.037447 TTGCATCGGATCCCAACACA 59.963 50.0 6.06 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.101448 AAGCATTCGCCGGAGCCT 62.101 61.111 5.05 0.00 39.83 4.58
18 19 4.845580 AGCATTCGCCGGAGCCTG 62.846 66.667 5.05 3.77 39.83 4.85
44 45 3.114616 CGTGGAGCGTGGCAAGAG 61.115 66.667 4.11 0.00 35.54 2.85
45 46 2.343758 GTGGAGCGTGGCAAGAGA 59.656 61.111 4.11 0.00 0.00 3.10
46 47 1.301716 GTGGAGCGTGGCAAGAGAA 60.302 57.895 4.11 0.00 0.00 2.87
47 48 1.004560 TGGAGCGTGGCAAGAGAAG 60.005 57.895 4.11 0.00 0.00 2.85
48 49 1.743252 GGAGCGTGGCAAGAGAAGG 60.743 63.158 4.11 0.00 0.00 3.46
49 50 1.004440 GAGCGTGGCAAGAGAAGGT 60.004 57.895 4.11 0.00 0.00 3.50
50 51 0.246635 GAGCGTGGCAAGAGAAGGTA 59.753 55.000 4.11 0.00 0.00 3.08
51 52 0.037232 AGCGTGGCAAGAGAAGGTAC 60.037 55.000 4.11 0.00 0.00 3.34
52 53 0.320421 GCGTGGCAAGAGAAGGTACA 60.320 55.000 4.11 0.00 0.00 2.90
53 54 1.429463 CGTGGCAAGAGAAGGTACAC 58.571 55.000 0.00 0.00 0.00 2.90
54 55 1.270094 CGTGGCAAGAGAAGGTACACA 60.270 52.381 0.00 0.00 0.00 3.72
55 56 2.143925 GTGGCAAGAGAAGGTACACAC 58.856 52.381 0.00 0.00 0.00 3.82
56 57 1.765904 TGGCAAGAGAAGGTACACACA 59.234 47.619 0.00 0.00 0.00 3.72
57 58 2.143925 GGCAAGAGAAGGTACACACAC 58.856 52.381 0.00 0.00 0.00 3.82
58 59 2.484770 GGCAAGAGAAGGTACACACACA 60.485 50.000 0.00 0.00 0.00 3.72
59 60 3.202906 GCAAGAGAAGGTACACACACAA 58.797 45.455 0.00 0.00 0.00 3.33
60 61 3.248602 GCAAGAGAAGGTACACACACAAG 59.751 47.826 0.00 0.00 0.00 3.16
61 62 4.693283 CAAGAGAAGGTACACACACAAGA 58.307 43.478 0.00 0.00 0.00 3.02
62 63 5.116180 CAAGAGAAGGTACACACACAAGAA 58.884 41.667 0.00 0.00 0.00 2.52
63 64 5.353394 AGAGAAGGTACACACACAAGAAA 57.647 39.130 0.00 0.00 0.00 2.52
64 65 5.741011 AGAGAAGGTACACACACAAGAAAA 58.259 37.500 0.00 0.00 0.00 2.29
65 66 5.817816 AGAGAAGGTACACACACAAGAAAAG 59.182 40.000 0.00 0.00 0.00 2.27
66 67 4.881850 AGAAGGTACACACACAAGAAAAGG 59.118 41.667 0.00 0.00 0.00 3.11
67 68 4.497291 AGGTACACACACAAGAAAAGGA 57.503 40.909 0.00 0.00 0.00 3.36
68 69 4.850680 AGGTACACACACAAGAAAAGGAA 58.149 39.130 0.00 0.00 0.00 3.36
69 70 5.258051 AGGTACACACACAAGAAAAGGAAA 58.742 37.500 0.00 0.00 0.00 3.13
70 71 5.712917 AGGTACACACACAAGAAAAGGAAAA 59.287 36.000 0.00 0.00 0.00 2.29
71 72 5.803461 GGTACACACACAAGAAAAGGAAAAC 59.197 40.000 0.00 0.00 0.00 2.43
72 73 5.722021 ACACACACAAGAAAAGGAAAACT 57.278 34.783 0.00 0.00 0.00 2.66
73 74 6.827586 ACACACACAAGAAAAGGAAAACTA 57.172 33.333 0.00 0.00 0.00 2.24
74 75 7.222000 ACACACACAAGAAAAGGAAAACTAA 57.778 32.000 0.00 0.00 0.00 2.24
75 76 7.662897 ACACACACAAGAAAAGGAAAACTAAA 58.337 30.769 0.00 0.00 0.00 1.85
76 77 7.812669 ACACACACAAGAAAAGGAAAACTAAAG 59.187 33.333 0.00 0.00 0.00 1.85
77 78 7.812669 CACACACAAGAAAAGGAAAACTAAAGT 59.187 33.333 0.00 0.00 0.00 2.66
78 79 9.016438 ACACACAAGAAAAGGAAAACTAAAGTA 57.984 29.630 0.00 0.00 0.00 2.24
79 80 9.285770 CACACAAGAAAAGGAAAACTAAAGTAC 57.714 33.333 0.00 0.00 0.00 2.73
80 81 9.016438 ACACAAGAAAAGGAAAACTAAAGTACA 57.984 29.630 0.00 0.00 0.00 2.90
81 82 9.503427 CACAAGAAAAGGAAAACTAAAGTACAG 57.497 33.333 0.00 0.00 0.00 2.74
82 83 9.457436 ACAAGAAAAGGAAAACTAAAGTACAGA 57.543 29.630 0.00 0.00 0.00 3.41
109 110 8.770850 AAAAATCATTTTTCATTTTGCGAGTG 57.229 26.923 1.98 0.00 38.39 3.51
110 111 7.712264 AAATCATTTTTCATTTTGCGAGTGA 57.288 28.000 0.00 0.00 0.00 3.41
111 112 7.712264 AATCATTTTTCATTTTGCGAGTGAA 57.288 28.000 0.00 0.97 0.00 3.18
112 113 7.712264 ATCATTTTTCATTTTGCGAGTGAAA 57.288 28.000 10.79 10.79 39.36 2.69
113 114 7.712264 TCATTTTTCATTTTGCGAGTGAAAT 57.288 28.000 13.99 2.52 40.37 2.17
114 115 8.809159 TCATTTTTCATTTTGCGAGTGAAATA 57.191 26.923 13.99 11.11 40.37 1.40
115 116 8.914654 TCATTTTTCATTTTGCGAGTGAAATAG 58.085 29.630 13.99 9.22 40.37 1.73
116 117 7.636259 TTTTTCATTTTGCGAGTGAAATAGG 57.364 32.000 13.99 0.00 40.37 2.57
117 118 4.963276 TCATTTTGCGAGTGAAATAGGG 57.037 40.909 0.00 0.00 0.00 3.53
118 119 4.584874 TCATTTTGCGAGTGAAATAGGGA 58.415 39.130 0.00 0.00 0.00 4.20
119 120 4.635765 TCATTTTGCGAGTGAAATAGGGAG 59.364 41.667 0.00 0.00 0.00 4.30
120 121 3.973206 TTTGCGAGTGAAATAGGGAGA 57.027 42.857 0.00 0.00 0.00 3.71
121 122 3.973206 TTGCGAGTGAAATAGGGAGAA 57.027 42.857 0.00 0.00 0.00 2.87
122 123 3.247006 TGCGAGTGAAATAGGGAGAAC 57.753 47.619 0.00 0.00 0.00 3.01
123 124 2.565391 TGCGAGTGAAATAGGGAGAACA 59.435 45.455 0.00 0.00 0.00 3.18
124 125 3.197766 TGCGAGTGAAATAGGGAGAACAT 59.802 43.478 0.00 0.00 0.00 2.71
125 126 4.192317 GCGAGTGAAATAGGGAGAACATT 58.808 43.478 0.00 0.00 0.00 2.71
126 127 4.636206 GCGAGTGAAATAGGGAGAACATTT 59.364 41.667 0.00 0.00 0.00 2.32
127 128 5.220681 GCGAGTGAAATAGGGAGAACATTTC 60.221 44.000 0.00 0.00 38.55 2.17
128 129 6.109359 CGAGTGAAATAGGGAGAACATTTCT 58.891 40.000 7.54 0.00 44.21 2.52
129 130 7.265673 CGAGTGAAATAGGGAGAACATTTCTA 58.734 38.462 7.54 0.00 40.87 2.10
130 131 7.764443 CGAGTGAAATAGGGAGAACATTTCTAA 59.236 37.037 7.54 0.00 40.87 2.10
131 132 9.449719 GAGTGAAATAGGGAGAACATTTCTAAA 57.550 33.333 7.54 0.00 40.87 1.85
132 133 9.807921 AGTGAAATAGGGAGAACATTTCTAAAA 57.192 29.630 7.54 0.00 40.87 1.52
156 157 5.982890 AAAAACATGGACCTCAATGTAGG 57.017 39.130 0.00 0.00 42.82 3.18
164 165 2.024176 CCTCAATGTAGGTCCGTTGG 57.976 55.000 0.00 0.00 33.17 3.77
165 166 1.369625 CTCAATGTAGGTCCGTTGGC 58.630 55.000 0.00 0.00 33.17 4.52
166 167 0.981183 TCAATGTAGGTCCGTTGGCT 59.019 50.000 0.00 0.00 33.17 4.75
167 168 2.167693 CTCAATGTAGGTCCGTTGGCTA 59.832 50.000 0.00 0.00 33.17 3.93
168 169 2.769663 TCAATGTAGGTCCGTTGGCTAT 59.230 45.455 0.00 0.00 33.17 2.97
169 170 3.962063 TCAATGTAGGTCCGTTGGCTATA 59.038 43.478 0.00 0.00 33.17 1.31
179 180 7.384477 AGGTCCGTTGGCTATATACTTAAATC 58.616 38.462 0.00 0.00 0.00 2.17
183 184 7.972277 TCCGTTGGCTATATACTTAAATCGATC 59.028 37.037 0.00 0.00 0.00 3.69
207 209 9.716507 ATCGAACATTTTTATATTTCTCAACCG 57.283 29.630 0.00 0.00 0.00 4.44
213 215 7.894376 TTTTTATATTTCTCAACCGACGACT 57.106 32.000 0.00 0.00 0.00 4.18
223 225 5.124297 TCTCAACCGACGACTATGAAATACA 59.876 40.000 0.00 0.00 0.00 2.29
224 226 5.337554 TCAACCGACGACTATGAAATACAG 58.662 41.667 0.00 0.00 0.00 2.74
225 227 4.978083 ACCGACGACTATGAAATACAGT 57.022 40.909 0.00 0.00 0.00 3.55
226 228 6.093909 TCAACCGACGACTATGAAATACAGTA 59.906 38.462 0.00 0.00 0.00 2.74
227 229 6.057627 ACCGACGACTATGAAATACAGTAG 57.942 41.667 0.00 0.00 0.00 2.57
228 230 5.008415 ACCGACGACTATGAAATACAGTAGG 59.992 44.000 0.00 0.00 0.00 3.18
230 232 6.238566 CCGACGACTATGAAATACAGTAGGAA 60.239 42.308 0.00 0.00 0.00 3.36
232 234 7.165483 CGACGACTATGAAATACAGTAGGAAAC 59.835 40.741 0.00 0.00 0.00 2.78
233 235 7.833786 ACGACTATGAAATACAGTAGGAAACA 58.166 34.615 0.00 0.00 0.00 2.83
234 236 7.974501 ACGACTATGAAATACAGTAGGAAACAG 59.025 37.037 0.00 0.00 0.00 3.16
235 237 7.974501 CGACTATGAAATACAGTAGGAAACAGT 59.025 37.037 0.00 0.00 0.00 3.55
270 272 2.410392 TCATCGTTCGACCAACAATTCG 59.590 45.455 0.00 0.00 34.20 3.34
278 280 6.192137 CGTTCGACCAACAATTCGATATTTTC 59.808 38.462 0.00 0.00 43.44 2.29
280 282 7.372451 TCGACCAACAATTCGATATTTTCTT 57.628 32.000 0.00 0.00 39.29 2.52
282 284 8.937884 TCGACCAACAATTCGATATTTTCTTAA 58.062 29.630 0.00 0.00 39.29 1.85
283 285 8.995906 CGACCAACAATTCGATATTTTCTTAAC 58.004 33.333 0.00 0.00 37.43 2.01
284 286 9.834628 GACCAACAATTCGATATTTTCTTAACA 57.165 29.630 0.00 0.00 0.00 2.41
306 414 2.651382 ATATGAACCCCGGGCTTTAC 57.349 50.000 17.73 4.65 0.00 2.01
319 427 4.796038 GGGCTTTACCGCTAGACATATA 57.204 45.455 0.00 0.00 40.62 0.86
322 430 5.337330 GGGCTTTACCGCTAGACATATACAT 60.337 44.000 0.00 0.00 40.62 2.29
323 431 6.164176 GGCTTTACCGCTAGACATATACATT 58.836 40.000 0.00 0.00 0.00 2.71
324 432 6.649557 GGCTTTACCGCTAGACATATACATTT 59.350 38.462 0.00 0.00 0.00 2.32
325 433 7.172703 GGCTTTACCGCTAGACATATACATTTT 59.827 37.037 0.00 0.00 0.00 1.82
326 434 8.557029 GCTTTACCGCTAGACATATACATTTTT 58.443 33.333 0.00 0.00 0.00 1.94
388 496 9.283768 TGATGAATTTAACCGATACAAGCATAT 57.716 29.630 0.00 0.00 0.00 1.78
405 513 6.785337 AGCATATACTGTATTATGCCGGTA 57.215 37.500 23.41 0.00 44.47 4.02
458 566 1.956629 ATGTAAGGCTGGTCCGGACG 61.957 60.000 27.68 16.32 40.77 4.79
469 577 2.123597 CCGGACGGATACTGGGGA 60.124 66.667 4.40 0.00 37.50 4.81
479 587 3.323775 GGATACTGGGGATTTGAGGGTA 58.676 50.000 0.00 0.00 0.00 3.69
480 588 3.328050 GGATACTGGGGATTTGAGGGTAG 59.672 52.174 0.00 0.00 0.00 3.18
481 589 2.361085 ACTGGGGATTTGAGGGTAGT 57.639 50.000 0.00 0.00 0.00 2.73
482 590 1.916181 ACTGGGGATTTGAGGGTAGTG 59.084 52.381 0.00 0.00 0.00 2.74
560 669 1.340991 CCACCTGGTCCCATCGAAAAT 60.341 52.381 0.00 0.00 0.00 1.82
565 674 5.047660 CACCTGGTCCCATCGAAAATAAAAA 60.048 40.000 0.00 0.00 0.00 1.94
572 681 8.227119 GGTCCCATCGAAAATAAAAATGTTTTG 58.773 33.333 0.00 0.00 0.00 2.44
581 690 3.696281 AAAAATGTTTTGCTTGCTGGC 57.304 38.095 0.00 0.00 0.00 4.85
589 698 4.362476 GCTTGCTGGCGGTTTGGG 62.362 66.667 0.00 0.00 0.00 4.12
635 747 2.892373 TGTTCGCAAAAATAGCCTCG 57.108 45.000 0.00 0.00 0.00 4.63
637 749 2.158841 TGTTCGCAAAAATAGCCTCGTC 59.841 45.455 0.00 0.00 0.00 4.20
718 831 2.178474 CATGCAATGTTAGGCGTGTC 57.822 50.000 0.00 0.00 41.07 3.67
753 866 5.368989 AGTTCCCTCATCCATTCGATAAAC 58.631 41.667 0.00 0.00 0.00 2.01
794 907 9.656323 TCTATATATGATTCATACCCTGTACCC 57.344 37.037 8.51 0.00 0.00 3.69
863 1215 2.571653 CCTCAACCACCTACATCCTGAA 59.428 50.000 0.00 0.00 0.00 3.02
872 1224 3.310954 ACCTACATCCTGAACCATCTCCT 60.311 47.826 0.00 0.00 0.00 3.69
873 1225 3.323403 CCTACATCCTGAACCATCTCCTC 59.677 52.174 0.00 0.00 0.00 3.71
874 1226 3.127791 ACATCCTGAACCATCTCCTCT 57.872 47.619 0.00 0.00 0.00 3.69
875 1227 4.271807 ACATCCTGAACCATCTCCTCTA 57.728 45.455 0.00 0.00 0.00 2.43
890 1242 7.148000 CCATCTCCTCTATCTATAATTGACGCA 60.148 40.741 0.00 0.00 0.00 5.24
927 1279 5.226803 TCATTATCAAGGGAAGGATCCTCA 58.773 41.667 16.52 0.00 45.77 3.86
929 1281 1.584724 TCAAGGGAAGGATCCTCACC 58.415 55.000 16.52 19.63 45.77 4.02
951 1303 4.016105 CCCTGGGTGATATATACTCCTCCT 60.016 50.000 3.97 0.00 0.00 3.69
953 1305 5.043732 CCTGGGTGATATATACTCCTCCTCT 60.044 48.000 0.00 0.00 0.00 3.69
956 1308 6.726299 TGGGTGATATATACTCCTCCTCTTTG 59.274 42.308 0.00 0.00 0.00 2.77
957 1309 6.954684 GGGTGATATATACTCCTCCTCTTTGA 59.045 42.308 0.00 0.00 0.00 2.69
959 1311 9.041354 GGTGATATATACTCCTCCTCTTTGAAT 57.959 37.037 0.00 0.00 0.00 2.57
971 1323 2.227388 CTCTTTGAATCACAGGCCACAC 59.773 50.000 5.01 0.00 0.00 3.82
974 1326 0.764271 TGAATCACAGGCCACACTGA 59.236 50.000 5.01 0.00 40.97 3.41
1014 1366 2.555757 AGAGACAATGAAGCTGCAAACC 59.444 45.455 0.00 0.00 0.00 3.27
1027 1379 1.073284 TGCAAACCCAACTACTCCTCC 59.927 52.381 0.00 0.00 0.00 4.30
1045 1397 1.675310 CTGGCTTCCATCACCGCAA 60.675 57.895 0.00 0.00 30.82 4.85
1060 1412 1.215244 CGCAACGATGATCATGAGCT 58.785 50.000 14.30 0.00 0.00 4.09
1314 1666 3.046497 CTGCCGCGGCCGTTAATTT 62.046 57.895 44.42 0.00 41.09 1.82
1315 1667 2.578445 GCCGCGGCCGTTAATTTG 60.578 61.111 39.89 8.53 34.56 2.32
1317 1669 2.578445 CGCGGCCGTTAATTTGCC 60.578 61.111 28.70 5.16 41.85 4.52
1338 1721 3.437795 CTGGCCAAGAAGCTGCGG 61.438 66.667 7.01 0.00 0.00 5.69
1360 1743 6.003950 CGGGGAGATTATGAAATGTGGTTAT 58.996 40.000 0.00 0.00 0.00 1.89
1378 1761 4.989168 GGTTATCGTATAAGCTCAAGTGGG 59.011 45.833 0.00 0.00 0.00 4.61
1382 1765 5.196341 TCGTATAAGCTCAAGTGGGTATG 57.804 43.478 0.00 0.00 0.00 2.39
1401 1784 6.155827 GGTATGCATGTATTTGTGTTGTTGT 58.844 36.000 10.16 0.00 0.00 3.32
1403 1786 7.973388 GGTATGCATGTATTTGTGTTGTTGTAT 59.027 33.333 10.16 0.00 0.00 2.29
1404 1787 9.352784 GTATGCATGTATTTGTGTTGTTGTATT 57.647 29.630 10.16 0.00 0.00 1.89
1407 1790 7.708322 TGCATGTATTTGTGTTGTTGTATTTGT 59.292 29.630 0.00 0.00 0.00 2.83
1408 1791 9.186323 GCATGTATTTGTGTTGTTGTATTTGTA 57.814 29.630 0.00 0.00 0.00 2.41
1422 1805 9.684448 TGTTGTATTTGTATGTAATGTTTGGTG 57.316 29.630 0.00 0.00 0.00 4.17
1423 1806 8.643752 GTTGTATTTGTATGTAATGTTTGGTGC 58.356 33.333 0.00 0.00 0.00 5.01
1425 1915 7.810282 TGTATTTGTATGTAATGTTTGGTGCAC 59.190 33.333 8.80 8.80 0.00 4.57
1431 1921 8.526978 TGTATGTAATGTTTGGTGCACAATAAT 58.473 29.630 20.43 2.28 39.21 1.28
1433 1923 6.753180 TGTAATGTTTGGTGCACAATAATGT 58.247 32.000 20.43 0.99 41.61 2.71
1448 1938 1.392589 AATGTGTTGGGATCCGATGC 58.607 50.000 5.45 0.00 0.00 3.91
1555 2072 4.202441 TGGCTCATCCAAGAAGCTAATTC 58.798 43.478 0.00 0.00 43.21 2.17
1563 2080 6.065976 TCCAAGAAGCTAATTCAGGAATCA 57.934 37.500 0.00 0.00 39.81 2.57
1567 2084 7.041235 CCAAGAAGCTAATTCAGGAATCATCTC 60.041 40.741 0.00 0.00 40.67 2.75
1568 2085 7.134362 AGAAGCTAATTCAGGAATCATCTCA 57.866 36.000 0.00 0.00 40.67 3.27
1571 2088 6.289834 AGCTAATTCAGGAATCATCTCACAG 58.710 40.000 0.00 0.00 0.00 3.66
1581 2098 3.023949 ATCTCACAGCCACCTCGCC 62.024 63.158 0.00 0.00 0.00 5.54
1593 2110 3.568007 GCCACCTCGCCAATTAATCAATA 59.432 43.478 0.00 0.00 0.00 1.90
1594 2111 4.320494 GCCACCTCGCCAATTAATCAATAG 60.320 45.833 0.00 0.00 0.00 1.73
1595 2112 5.063204 CCACCTCGCCAATTAATCAATAGA 58.937 41.667 0.00 0.00 0.00 1.98
1599 2116 8.446273 CACCTCGCCAATTAATCAATAGATTAG 58.554 37.037 0.00 0.00 44.95 1.73
1617 2134 7.688918 AGATTAGTTGATCTCTTGAATCCCT 57.311 36.000 0.00 0.00 30.67 4.20
1648 2165 0.321653 ACGGTTGCATCTCCTTGGAC 60.322 55.000 0.00 0.00 0.00 4.02
1654 2171 1.421268 TGCATCTCCTTGGACTTGTGT 59.579 47.619 0.00 0.00 0.00 3.72
1659 2176 2.703536 TCTCCTTGGACTTGTGTTGCTA 59.296 45.455 0.00 0.00 0.00 3.49
1660 2177 2.808543 CTCCTTGGACTTGTGTTGCTAC 59.191 50.000 0.00 0.00 0.00 3.58
1684 2201 1.066358 CATCTCTCCTGCAGCTTGTGA 60.066 52.381 8.66 7.08 0.00 3.58
1700 2217 0.532573 GTGATGCTTCCCTCGTCTGA 59.467 55.000 0.00 0.00 0.00 3.27
1722 2239 0.383949 CGTCTCTGCTAGAGCTTCCC 59.616 60.000 2.72 0.00 42.04 3.97
1731 2248 2.758295 GCTAGAGCTTCCCTATCCACCT 60.758 54.545 0.00 0.00 38.21 4.00
1732 2249 3.500654 GCTAGAGCTTCCCTATCCACCTA 60.501 52.174 0.00 0.00 38.21 3.08
1733 2250 2.965562 AGAGCTTCCCTATCCACCTAC 58.034 52.381 0.00 0.00 0.00 3.18
1739 2256 1.583611 TCCCTATCCACCTACCCATGT 59.416 52.381 0.00 0.00 0.00 3.21
1743 2260 1.120530 ATCCACCTACCCATGTCGAC 58.879 55.000 9.11 9.11 0.00 4.20
1779 2303 9.021863 CACGAAGTAGTTTTCATAGGAATACTC 57.978 37.037 15.02 8.55 42.11 2.59
1795 2319 5.892686 GGAATACTCCTATATAAGGCTCGGT 59.107 44.000 0.00 0.00 46.10 4.69
1797 2321 7.013178 GGAATACTCCTATATAAGGCTCGGTAC 59.987 44.444 0.00 0.00 46.10 3.34
1811 2335 2.121645 GGTACGGACCATGATCGGT 58.878 57.895 13.46 5.50 46.12 4.69
1813 2337 1.891150 GGTACGGACCATGATCGGTAT 59.109 52.381 13.46 0.00 46.12 2.73
1818 2342 2.558795 CGGACCATGATCGGTATCTCTT 59.441 50.000 0.00 0.00 40.22 2.85
1832 2356 8.289939 TCGGTATCTCTTTAGTCTTTACACAT 57.710 34.615 0.00 0.00 0.00 3.21
1833 2357 8.188799 TCGGTATCTCTTTAGTCTTTACACATG 58.811 37.037 0.00 0.00 0.00 3.21
1834 2358 7.435488 CGGTATCTCTTTAGTCTTTACACATGG 59.565 40.741 0.00 0.00 0.00 3.66
1835 2359 7.224949 GGTATCTCTTTAGTCTTTACACATGGC 59.775 40.741 0.00 0.00 0.00 4.40
1836 2360 6.109156 TCTCTTTAGTCTTTACACATGGCA 57.891 37.500 0.00 0.00 0.00 4.92
1837 2361 6.166279 TCTCTTTAGTCTTTACACATGGCAG 58.834 40.000 0.00 0.00 0.00 4.85
1838 2362 6.014584 TCTCTTTAGTCTTTACACATGGCAGA 60.015 38.462 0.00 0.00 0.00 4.26
1839 2363 5.932303 TCTTTAGTCTTTACACATGGCAGAC 59.068 40.000 0.00 1.03 35.13 3.51
1840 2364 2.688507 AGTCTTTACACATGGCAGACG 58.311 47.619 0.00 0.00 39.14 4.18
1841 2365 1.128692 GTCTTTACACATGGCAGACGC 59.871 52.381 0.00 0.00 37.44 5.19
1854 2378 3.502191 GCAGACGCCCAAAATTAATCA 57.498 42.857 0.00 0.00 0.00 2.57
1855 2379 3.179048 GCAGACGCCCAAAATTAATCAC 58.821 45.455 0.00 0.00 0.00 3.06
1856 2380 3.366883 GCAGACGCCCAAAATTAATCACA 60.367 43.478 0.00 0.00 0.00 3.58
1857 2381 4.165779 CAGACGCCCAAAATTAATCACAC 58.834 43.478 0.00 0.00 0.00 3.82
1858 2382 3.823873 AGACGCCCAAAATTAATCACACA 59.176 39.130 0.00 0.00 0.00 3.72
1859 2383 3.908213 ACGCCCAAAATTAATCACACAC 58.092 40.909 0.00 0.00 0.00 3.82
1860 2384 2.914214 CGCCCAAAATTAATCACACACG 59.086 45.455 0.00 0.00 0.00 4.49
1861 2385 2.666022 GCCCAAAATTAATCACACACGC 59.334 45.455 0.00 0.00 0.00 5.34
1862 2386 3.613910 GCCCAAAATTAATCACACACGCT 60.614 43.478 0.00 0.00 0.00 5.07
1863 2387 4.165779 CCCAAAATTAATCACACACGCTC 58.834 43.478 0.00 0.00 0.00 5.03
1864 2388 4.320861 CCCAAAATTAATCACACACGCTCA 60.321 41.667 0.00 0.00 0.00 4.26
1865 2389 4.853196 CCAAAATTAATCACACACGCTCAG 59.147 41.667 0.00 0.00 0.00 3.35
1866 2390 5.451908 CAAAATTAATCACACACGCTCAGT 58.548 37.500 0.00 0.00 0.00 3.41
1877 2401 2.496817 GCTCAGTGGCGGACCTAG 59.503 66.667 0.00 0.00 36.63 3.02
1878 2402 2.496817 CTCAGTGGCGGACCTAGC 59.503 66.667 0.00 0.00 36.63 3.42
1885 2409 4.162690 GCGGACCTAGCCCACTGG 62.163 72.222 0.00 0.00 0.00 4.00
1890 2414 3.313874 CCTAGCCCACTGGGTCAG 58.686 66.667 16.03 12.12 46.51 3.51
1891 2415 2.370445 CCTAGCCCACTGGGTCAGG 61.370 68.421 16.03 16.79 46.51 3.86
1892 2416 2.285368 TAGCCCACTGGGTCAGGG 60.285 66.667 16.03 0.00 46.51 4.45
1893 2417 3.188355 TAGCCCACTGGGTCAGGGT 62.188 63.158 16.03 0.00 46.51 4.34
1894 2418 4.351054 GCCCACTGGGTCAGGGTG 62.351 72.222 16.03 0.00 46.51 4.61
1896 2420 3.650950 CCACTGGGTCAGGGTGGG 61.651 72.222 0.00 0.00 44.63 4.61
1897 2421 4.351054 CACTGGGTCAGGGTGGGC 62.351 72.222 0.00 0.00 35.51 5.36
1898 2422 4.599500 ACTGGGTCAGGGTGGGCT 62.599 66.667 0.00 0.00 35.51 5.19
1899 2423 2.285368 CTGGGTCAGGGTGGGCTA 60.285 66.667 0.00 0.00 0.00 3.93
1900 2424 1.923395 CTGGGTCAGGGTGGGCTAA 60.923 63.158 0.00 0.00 0.00 3.09
1901 2425 1.230149 TGGGTCAGGGTGGGCTAAT 60.230 57.895 0.00 0.00 0.00 1.73
1902 2426 0.045008 TGGGTCAGGGTGGGCTAATA 59.955 55.000 0.00 0.00 0.00 0.98
1903 2427 0.765510 GGGTCAGGGTGGGCTAATAG 59.234 60.000 0.00 0.00 0.00 1.73
1904 2428 1.508256 GGTCAGGGTGGGCTAATAGT 58.492 55.000 0.00 0.00 0.00 2.12
1905 2429 1.141053 GGTCAGGGTGGGCTAATAGTG 59.859 57.143 0.00 0.00 0.00 2.74
1906 2430 1.838077 GTCAGGGTGGGCTAATAGTGT 59.162 52.381 0.00 0.00 0.00 3.55
1907 2431 3.036091 GTCAGGGTGGGCTAATAGTGTA 58.964 50.000 0.00 0.00 0.00 2.90
1908 2432 3.069729 GTCAGGGTGGGCTAATAGTGTAG 59.930 52.174 0.00 0.00 0.00 2.74
1909 2433 2.047830 AGGGTGGGCTAATAGTGTAGC 58.952 52.381 0.00 0.00 44.87 3.58
1910 2434 2.047830 GGGTGGGCTAATAGTGTAGCT 58.952 52.381 4.37 0.00 44.94 3.32
1911 2435 2.224305 GGGTGGGCTAATAGTGTAGCTG 60.224 54.545 0.00 0.00 44.94 4.24
1912 2436 2.434702 GGTGGGCTAATAGTGTAGCTGT 59.565 50.000 0.00 0.00 44.94 4.40
1913 2437 3.640029 GGTGGGCTAATAGTGTAGCTGTA 59.360 47.826 0.00 0.00 44.94 2.74
1914 2438 4.501058 GGTGGGCTAATAGTGTAGCTGTAC 60.501 50.000 0.00 0.00 44.94 2.90
1915 2439 4.098960 GTGGGCTAATAGTGTAGCTGTACA 59.901 45.833 0.00 0.00 44.94 2.90
1916 2440 4.899457 TGGGCTAATAGTGTAGCTGTACAT 59.101 41.667 0.00 0.00 44.94 2.29
1917 2441 6.015688 GTGGGCTAATAGTGTAGCTGTACATA 60.016 42.308 0.00 0.00 44.94 2.29
1918 2442 6.724441 TGGGCTAATAGTGTAGCTGTACATAT 59.276 38.462 0.00 0.00 44.94 1.78
1919 2443 7.891712 TGGGCTAATAGTGTAGCTGTACATATA 59.108 37.037 0.00 0.00 44.94 0.86
1920 2444 8.189460 GGGCTAATAGTGTAGCTGTACATATAC 58.811 40.741 0.00 3.39 44.94 1.47
1921 2445 8.737175 GGCTAATAGTGTAGCTGTACATATACA 58.263 37.037 13.51 13.51 44.94 2.29
1984 2508 6.535963 AAAGGCTATTTTCAAATCTCAGGG 57.464 37.500 0.00 0.00 0.00 4.45
1985 2509 5.198602 AGGCTATTTTCAAATCTCAGGGT 57.801 39.130 0.00 0.00 0.00 4.34
1986 2510 4.952335 AGGCTATTTTCAAATCTCAGGGTG 59.048 41.667 0.00 0.00 0.00 4.61
1987 2511 4.098501 GGCTATTTTCAAATCTCAGGGTGG 59.901 45.833 0.00 0.00 0.00 4.61
1988 2512 4.098501 GCTATTTTCAAATCTCAGGGTGGG 59.901 45.833 0.00 0.00 0.00 4.61
1989 2513 1.923356 TTTCAAATCTCAGGGTGGGC 58.077 50.000 0.00 0.00 0.00 5.36
1990 2514 0.039618 TTCAAATCTCAGGGTGGGCC 59.960 55.000 0.00 0.00 0.00 5.80
1991 2515 1.139498 TCAAATCTCAGGGTGGGCCA 61.139 55.000 0.00 0.00 36.17 5.36
1992 2516 0.967380 CAAATCTCAGGGTGGGCCAC 60.967 60.000 28.69 28.69 36.17 5.01
1993 2517 2.484287 AAATCTCAGGGTGGGCCACG 62.484 60.000 29.18 16.52 34.83 4.94
2006 2530 4.394712 CCACGGCTCACCCTGTCC 62.395 72.222 0.00 0.00 0.00 4.02
2007 2531 3.625897 CACGGCTCACCCTGTCCA 61.626 66.667 0.00 0.00 0.00 4.02
2008 2532 3.626924 ACGGCTCACCCTGTCCAC 61.627 66.667 0.00 0.00 0.00 4.02
2009 2533 4.394712 CGGCTCACCCTGTCCACC 62.395 72.222 0.00 0.00 0.00 4.61
2010 2534 4.035102 GGCTCACCCTGTCCACCC 62.035 72.222 0.00 0.00 0.00 4.61
2011 2535 2.930562 GCTCACCCTGTCCACCCT 60.931 66.667 0.00 0.00 0.00 4.34
2012 2536 2.960688 GCTCACCCTGTCCACCCTC 61.961 68.421 0.00 0.00 0.00 4.30
2013 2537 1.229336 CTCACCCTGTCCACCCTCT 60.229 63.158 0.00 0.00 0.00 3.69
2014 2538 0.041238 CTCACCCTGTCCACCCTCTA 59.959 60.000 0.00 0.00 0.00 2.43
2015 2539 0.252103 TCACCCTGTCCACCCTCTAC 60.252 60.000 0.00 0.00 0.00 2.59
2016 2540 1.080538 ACCCTGTCCACCCTCTACC 59.919 63.158 0.00 0.00 0.00 3.18
2017 2541 1.392534 CCCTGTCCACCCTCTACCT 59.607 63.158 0.00 0.00 0.00 3.08
2018 2542 0.688087 CCCTGTCCACCCTCTACCTC 60.688 65.000 0.00 0.00 0.00 3.85
2019 2543 0.688087 CCTGTCCACCCTCTACCTCC 60.688 65.000 0.00 0.00 0.00 4.30
2020 2544 1.000019 TGTCCACCCTCTACCTCCG 60.000 63.158 0.00 0.00 0.00 4.63
2021 2545 1.000107 GTCCACCCTCTACCTCCGT 60.000 63.158 0.00 0.00 0.00 4.69
2022 2546 1.036481 GTCCACCCTCTACCTCCGTC 61.036 65.000 0.00 0.00 0.00 4.79
2023 2547 1.000019 CCACCCTCTACCTCCGTCA 60.000 63.158 0.00 0.00 0.00 4.35
2024 2548 1.321074 CCACCCTCTACCTCCGTCAC 61.321 65.000 0.00 0.00 0.00 3.67
2025 2549 0.323542 CACCCTCTACCTCCGTCACT 60.324 60.000 0.00 0.00 0.00 3.41
2026 2550 0.323542 ACCCTCTACCTCCGTCACTG 60.324 60.000 0.00 0.00 0.00 3.66
2027 2551 1.668101 CCCTCTACCTCCGTCACTGC 61.668 65.000 0.00 0.00 0.00 4.40
2028 2552 0.965866 CCTCTACCTCCGTCACTGCA 60.966 60.000 0.00 0.00 0.00 4.41
2029 2553 0.171455 CTCTACCTCCGTCACTGCAC 59.829 60.000 0.00 0.00 0.00 4.57
2030 2554 0.538746 TCTACCTCCGTCACTGCACA 60.539 55.000 0.00 0.00 0.00 4.57
2031 2555 0.532573 CTACCTCCGTCACTGCACAT 59.467 55.000 0.00 0.00 0.00 3.21
2032 2556 0.246360 TACCTCCGTCACTGCACATG 59.754 55.000 0.00 0.00 0.00 3.21
2033 2557 2.393768 CCTCCGTCACTGCACATGC 61.394 63.158 0.00 0.00 42.50 4.06
2034 2558 1.375140 CTCCGTCACTGCACATGCT 60.375 57.895 5.31 0.00 42.66 3.79
2035 2559 1.357258 CTCCGTCACTGCACATGCTC 61.357 60.000 5.31 0.00 42.66 4.26
2036 2560 2.733671 CCGTCACTGCACATGCTCG 61.734 63.158 5.31 0.00 42.66 5.03
2037 2561 2.023771 CGTCACTGCACATGCTCGT 61.024 57.895 5.31 0.00 42.66 4.18
2038 2562 0.732538 CGTCACTGCACATGCTCGTA 60.733 55.000 5.31 0.00 42.66 3.43
2039 2563 0.716108 GTCACTGCACATGCTCGTAC 59.284 55.000 5.31 0.00 42.66 3.67
2040 2564 0.389817 TCACTGCACATGCTCGTACC 60.390 55.000 5.31 0.00 42.66 3.34
2041 2565 0.390340 CACTGCACATGCTCGTACCT 60.390 55.000 5.31 0.00 42.66 3.08
2042 2566 1.135112 CACTGCACATGCTCGTACCTA 60.135 52.381 5.31 0.00 42.66 3.08
2043 2567 1.135139 ACTGCACATGCTCGTACCTAG 59.865 52.381 5.31 0.00 42.66 3.02
2044 2568 0.179111 TGCACATGCTCGTACCTAGC 60.179 55.000 5.31 7.72 42.66 3.42
2045 2569 0.103208 GCACATGCTCGTACCTAGCT 59.897 55.000 14.14 0.00 40.73 3.32
2046 2570 1.866063 GCACATGCTCGTACCTAGCTC 60.866 57.143 14.14 0.00 40.73 4.09
2047 2571 0.663688 ACATGCTCGTACCTAGCTCG 59.336 55.000 14.14 8.66 40.73 5.03
2048 2572 0.661780 CATGCTCGTACCTAGCTCGC 60.662 60.000 14.14 0.00 40.73 5.03
2049 2573 1.797211 ATGCTCGTACCTAGCTCGCC 61.797 60.000 14.14 0.00 40.73 5.54
2050 2574 2.632541 CTCGTACCTAGCTCGCCG 59.367 66.667 0.00 0.00 0.00 6.46
2051 2575 3.524330 CTCGTACCTAGCTCGCCGC 62.524 68.421 0.00 0.00 39.57 6.53
2052 2576 4.625781 CGTACCTAGCTCGCCGCC 62.626 72.222 0.00 0.00 40.39 6.13
2053 2577 4.281947 GTACCTAGCTCGCCGCCC 62.282 72.222 0.00 0.00 40.39 6.13
2079 2603 3.274586 CTCGCCGCCATGGTCATG 61.275 66.667 14.67 4.09 41.21 3.07
2087 2611 3.879682 CATGGTCATGGCCACGCG 61.880 66.667 24.12 9.68 41.94 6.01
2179 2703 3.736224 CCACCATGGCCTGCTCCT 61.736 66.667 13.04 0.00 0.00 3.69
2180 2704 2.357836 CACCATGGCCTGCTCCTT 59.642 61.111 13.04 0.00 0.00 3.36
2181 2705 1.751927 CACCATGGCCTGCTCCTTC 60.752 63.158 13.04 0.00 0.00 3.46
2182 2706 2.123982 CCATGGCCTGCTCCTTCC 60.124 66.667 3.32 0.00 0.00 3.46
2183 2707 2.123982 CATGGCCTGCTCCTTCCC 60.124 66.667 3.32 0.00 0.00 3.97
2184 2708 2.286732 ATGGCCTGCTCCTTCCCT 60.287 61.111 3.32 0.00 0.00 4.20
2185 2709 2.687610 ATGGCCTGCTCCTTCCCTG 61.688 63.158 3.32 0.00 0.00 4.45
2186 2710 4.811364 GGCCTGCTCCTTCCCTGC 62.811 72.222 0.00 0.00 0.00 4.85
2187 2711 3.726144 GCCTGCTCCTTCCCTGCT 61.726 66.667 0.00 0.00 0.00 4.24
2188 2712 2.588989 CCTGCTCCTTCCCTGCTC 59.411 66.667 0.00 0.00 0.00 4.26
2189 2713 2.186384 CTGCTCCTTCCCTGCTCG 59.814 66.667 0.00 0.00 0.00 5.03
2190 2714 4.087892 TGCTCCTTCCCTGCTCGC 62.088 66.667 0.00 0.00 0.00 5.03
2191 2715 4.847444 GCTCCTTCCCTGCTCGCC 62.847 72.222 0.00 0.00 0.00 5.54
2192 2716 4.168291 CTCCTTCCCTGCTCGCCC 62.168 72.222 0.00 0.00 0.00 6.13
2289 2813 4.598894 CGCTCCTCCCCGCTCATG 62.599 72.222 0.00 0.00 0.00 3.07
2290 2814 4.925861 GCTCCTCCCCGCTCATGC 62.926 72.222 0.00 0.00 0.00 4.06
2291 2815 4.247380 CTCCTCCCCGCTCATGCC 62.247 72.222 0.00 0.00 35.36 4.40
2300 2824 3.945434 GCTCATGCCGCCGTCATG 61.945 66.667 0.95 0.95 41.87 3.07
2301 2825 3.274586 CTCATGCCGCCGTCATGG 61.275 66.667 8.37 0.00 41.11 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.101448 AGGCTCCGGCGAATGCTT 62.101 61.111 9.30 2.70 42.25 3.91
1 2 4.845580 CAGGCTCCGGCGAATGCT 62.846 66.667 9.30 0.00 42.25 3.79
28 29 1.294659 CTTCTCTTGCCACGCTCCAC 61.295 60.000 0.00 0.00 0.00 4.02
29 30 1.004560 CTTCTCTTGCCACGCTCCA 60.005 57.895 0.00 0.00 0.00 3.86
30 31 1.743252 CCTTCTCTTGCCACGCTCC 60.743 63.158 0.00 0.00 0.00 4.70
31 32 0.246635 TACCTTCTCTTGCCACGCTC 59.753 55.000 0.00 0.00 0.00 5.03
32 33 0.037232 GTACCTTCTCTTGCCACGCT 60.037 55.000 0.00 0.00 0.00 5.07
33 34 0.320421 TGTACCTTCTCTTGCCACGC 60.320 55.000 0.00 0.00 0.00 5.34
34 35 1.270094 TGTGTACCTTCTCTTGCCACG 60.270 52.381 0.00 0.00 0.00 4.94
35 36 2.143925 GTGTGTACCTTCTCTTGCCAC 58.856 52.381 0.00 0.00 0.00 5.01
36 37 1.765904 TGTGTGTACCTTCTCTTGCCA 59.234 47.619 0.00 0.00 0.00 4.92
37 38 2.143925 GTGTGTGTACCTTCTCTTGCC 58.856 52.381 0.00 0.00 0.00 4.52
38 39 2.833794 TGTGTGTGTACCTTCTCTTGC 58.166 47.619 0.00 0.00 0.00 4.01
39 40 4.693283 TCTTGTGTGTGTACCTTCTCTTG 58.307 43.478 0.00 0.00 0.00 3.02
40 41 5.353394 TTCTTGTGTGTGTACCTTCTCTT 57.647 39.130 0.00 0.00 0.00 2.85
41 42 5.353394 TTTCTTGTGTGTGTACCTTCTCT 57.647 39.130 0.00 0.00 0.00 3.10
42 43 5.007724 CCTTTTCTTGTGTGTGTACCTTCTC 59.992 44.000 0.00 0.00 0.00 2.87
43 44 4.881850 CCTTTTCTTGTGTGTGTACCTTCT 59.118 41.667 0.00 0.00 0.00 2.85
44 45 4.879545 TCCTTTTCTTGTGTGTGTACCTTC 59.120 41.667 0.00 0.00 0.00 3.46
45 46 4.850680 TCCTTTTCTTGTGTGTGTACCTT 58.149 39.130 0.00 0.00 0.00 3.50
46 47 4.497291 TCCTTTTCTTGTGTGTGTACCT 57.503 40.909 0.00 0.00 0.00 3.08
47 48 5.570234 TTTCCTTTTCTTGTGTGTGTACC 57.430 39.130 0.00 0.00 0.00 3.34
48 49 6.617879 AGTTTTCCTTTTCTTGTGTGTGTAC 58.382 36.000 0.00 0.00 0.00 2.90
49 50 6.827586 AGTTTTCCTTTTCTTGTGTGTGTA 57.172 33.333 0.00 0.00 0.00 2.90
50 51 5.722021 AGTTTTCCTTTTCTTGTGTGTGT 57.278 34.783 0.00 0.00 0.00 3.72
51 52 7.812669 ACTTTAGTTTTCCTTTTCTTGTGTGTG 59.187 33.333 0.00 0.00 0.00 3.82
52 53 7.892609 ACTTTAGTTTTCCTTTTCTTGTGTGT 58.107 30.769 0.00 0.00 0.00 3.72
53 54 9.285770 GTACTTTAGTTTTCCTTTTCTTGTGTG 57.714 33.333 0.00 0.00 0.00 3.82
54 55 9.016438 TGTACTTTAGTTTTCCTTTTCTTGTGT 57.984 29.630 0.00 0.00 0.00 3.72
55 56 9.503427 CTGTACTTTAGTTTTCCTTTTCTTGTG 57.497 33.333 0.00 0.00 0.00 3.33
56 57 9.457436 TCTGTACTTTAGTTTTCCTTTTCTTGT 57.543 29.630 0.00 0.00 0.00 3.16
84 85 8.610896 TCACTCGCAAAATGAAAAATGATTTTT 58.389 25.926 15.10 15.10 44.93 1.94
85 86 8.140677 TCACTCGCAAAATGAAAAATGATTTT 57.859 26.923 0.00 0.00 41.37 1.82
86 87 7.712264 TCACTCGCAAAATGAAAAATGATTT 57.288 28.000 0.00 0.00 0.00 2.17
87 88 7.712264 TTCACTCGCAAAATGAAAAATGATT 57.288 28.000 0.00 0.00 29.56 2.57
88 89 7.712264 TTTCACTCGCAAAATGAAAAATGAT 57.288 28.000 0.00 0.00 38.92 2.45
89 90 7.712264 ATTTCACTCGCAAAATGAAAAATGA 57.288 28.000 3.03 0.00 43.50 2.57
90 91 8.164153 CCTATTTCACTCGCAAAATGAAAAATG 58.836 33.333 3.03 0.00 43.50 2.32
91 92 7.331687 CCCTATTTCACTCGCAAAATGAAAAAT 59.668 33.333 3.03 0.00 43.50 1.82
92 93 6.644592 CCCTATTTCACTCGCAAAATGAAAAA 59.355 34.615 3.03 0.00 43.50 1.94
93 94 6.015856 TCCCTATTTCACTCGCAAAATGAAAA 60.016 34.615 3.03 0.00 43.50 2.29
94 95 5.475220 TCCCTATTTCACTCGCAAAATGAAA 59.525 36.000 1.49 1.49 44.18 2.69
95 96 5.007034 TCCCTATTTCACTCGCAAAATGAA 58.993 37.500 0.00 0.00 0.00 2.57
96 97 4.584874 TCCCTATTTCACTCGCAAAATGA 58.415 39.130 0.00 0.00 0.00 2.57
97 98 4.635765 TCTCCCTATTTCACTCGCAAAATG 59.364 41.667 0.00 0.00 0.00 2.32
98 99 4.843728 TCTCCCTATTTCACTCGCAAAAT 58.156 39.130 0.00 0.00 0.00 1.82
99 100 4.280436 TCTCCCTATTTCACTCGCAAAA 57.720 40.909 0.00 0.00 0.00 2.44
100 101 3.973206 TCTCCCTATTTCACTCGCAAA 57.027 42.857 0.00 0.00 0.00 3.68
101 102 3.007506 TGTTCTCCCTATTTCACTCGCAA 59.992 43.478 0.00 0.00 0.00 4.85
102 103 2.565391 TGTTCTCCCTATTTCACTCGCA 59.435 45.455 0.00 0.00 0.00 5.10
103 104 3.247006 TGTTCTCCCTATTTCACTCGC 57.753 47.619 0.00 0.00 0.00 5.03
104 105 6.109359 AGAAATGTTCTCCCTATTTCACTCG 58.891 40.000 0.00 0.00 41.14 4.18
105 106 9.449719 TTTAGAAATGTTCTCCCTATTTCACTC 57.550 33.333 0.00 0.00 41.14 3.51
106 107 9.807921 TTTTAGAAATGTTCTCCCTATTTCACT 57.192 29.630 0.00 0.00 41.14 3.41
134 135 5.982890 CCTACATTGAGGTCCATGTTTTT 57.017 39.130 2.32 0.00 0.00 1.94
145 146 2.012051 GCCAACGGACCTACATTGAGG 61.012 57.143 0.00 0.00 42.89 3.86
146 147 1.066143 AGCCAACGGACCTACATTGAG 60.066 52.381 0.00 0.00 0.00 3.02
147 148 0.981183 AGCCAACGGACCTACATTGA 59.019 50.000 0.00 0.00 0.00 2.57
148 149 2.684001 TAGCCAACGGACCTACATTG 57.316 50.000 0.00 0.00 0.00 2.82
149 150 5.778750 AGTATATAGCCAACGGACCTACATT 59.221 40.000 0.00 0.00 0.00 2.71
150 151 5.331069 AGTATATAGCCAACGGACCTACAT 58.669 41.667 0.00 0.00 0.00 2.29
151 152 4.733165 AGTATATAGCCAACGGACCTACA 58.267 43.478 0.00 0.00 0.00 2.74
152 153 5.718724 AAGTATATAGCCAACGGACCTAC 57.281 43.478 0.00 0.00 0.00 3.18
153 154 7.838079 TTTAAGTATATAGCCAACGGACCTA 57.162 36.000 0.00 0.00 0.00 3.08
154 155 6.736110 TTTAAGTATATAGCCAACGGACCT 57.264 37.500 0.00 0.00 0.00 3.85
155 156 6.309737 CGATTTAAGTATATAGCCAACGGACC 59.690 42.308 0.00 0.00 0.00 4.46
156 157 7.086376 TCGATTTAAGTATATAGCCAACGGAC 58.914 38.462 0.00 0.00 0.00 4.79
157 158 7.218228 TCGATTTAAGTATATAGCCAACGGA 57.782 36.000 0.00 0.00 0.00 4.69
158 159 7.044249 CGATCGATTTAAGTATATAGCCAACGG 60.044 40.741 10.26 0.00 0.00 4.44
159 160 7.695201 TCGATCGATTTAAGTATATAGCCAACG 59.305 37.037 15.15 0.00 0.00 4.10
160 161 8.906636 TCGATCGATTTAAGTATATAGCCAAC 57.093 34.615 15.15 0.00 0.00 3.77
161 162 9.350357 GTTCGATCGATTTAAGTATATAGCCAA 57.650 33.333 20.18 0.00 0.00 4.52
162 163 8.517056 TGTTCGATCGATTTAAGTATATAGCCA 58.483 33.333 20.18 0.00 0.00 4.75
163 164 8.906636 TGTTCGATCGATTTAAGTATATAGCC 57.093 34.615 20.18 0.00 0.00 3.93
183 184 8.995906 GTCGGTTGAGAAATATAAAAATGTTCG 58.004 33.333 0.00 0.00 0.00 3.95
204 206 4.978083 ACTGTATTTCATAGTCGTCGGT 57.022 40.909 0.00 0.00 0.00 4.69
207 209 7.972277 TGTTTCCTACTGTATTTCATAGTCGTC 59.028 37.037 0.00 0.00 30.25 4.20
223 225 9.959721 ACATGTATAAATTGACTGTTTCCTACT 57.040 29.630 0.00 0.00 0.00 2.57
225 227 9.952030 TGACATGTATAAATTGACTGTTTCCTA 57.048 29.630 0.00 0.00 0.00 2.94
226 228 8.862325 TGACATGTATAAATTGACTGTTTCCT 57.138 30.769 0.00 0.00 0.00 3.36
227 229 9.722056 GATGACATGTATAAATTGACTGTTTCC 57.278 33.333 0.00 0.00 0.00 3.13
228 230 9.425893 CGATGACATGTATAAATTGACTGTTTC 57.574 33.333 0.00 0.00 0.00 2.78
230 232 8.492673 ACGATGACATGTATAAATTGACTGTT 57.507 30.769 0.00 0.00 0.00 3.16
232 234 7.789302 CGAACGATGACATGTATAAATTGACTG 59.211 37.037 0.00 0.00 0.00 3.51
233 235 7.704899 TCGAACGATGACATGTATAAATTGACT 59.295 33.333 0.00 0.00 0.00 3.41
234 236 7.787935 GTCGAACGATGACATGTATAAATTGAC 59.212 37.037 0.00 0.30 36.37 3.18
235 237 7.042992 GGTCGAACGATGACATGTATAAATTGA 60.043 37.037 0.00 0.00 38.10 2.57
278 280 4.457949 GCCCGGGGTTCATATATTGTTAAG 59.542 45.833 25.28 0.00 0.00 1.85
280 282 3.653836 AGCCCGGGGTTCATATATTGTTA 59.346 43.478 22.45 0.00 0.00 2.41
282 284 2.062636 AGCCCGGGGTTCATATATTGT 58.937 47.619 22.45 0.00 0.00 2.71
283 285 2.879103 AGCCCGGGGTTCATATATTG 57.121 50.000 22.45 0.00 0.00 1.90
284 286 3.895704 AAAGCCCGGGGTTCATATATT 57.104 42.857 36.63 17.78 34.49 1.28
285 287 3.009805 GGTAAAGCCCGGGGTTCATATAT 59.990 47.826 36.63 22.64 34.49 0.86
286 288 2.372837 GGTAAAGCCCGGGGTTCATATA 59.627 50.000 36.63 22.66 34.49 0.86
380 488 5.874810 ACCGGCATAATACAGTATATGCTTG 59.125 40.000 21.69 17.69 43.33 4.01
381 489 6.049955 ACCGGCATAATACAGTATATGCTT 57.950 37.500 21.69 11.97 43.33 3.91
458 566 2.136026 ACCCTCAAATCCCCAGTATCC 58.864 52.381 0.00 0.00 0.00 2.59
464 572 1.295020 CCACTACCCTCAAATCCCCA 58.705 55.000 0.00 0.00 0.00 4.96
469 577 3.591527 TCAATCCACCACTACCCTCAAAT 59.408 43.478 0.00 0.00 0.00 2.32
479 587 8.704668 AGAATTTAAAGTTTTCAATCCACCACT 58.295 29.630 0.00 0.00 0.00 4.00
480 588 8.764287 CAGAATTTAAAGTTTTCAATCCACCAC 58.236 33.333 0.00 0.00 0.00 4.16
481 589 8.482128 ACAGAATTTAAAGTTTTCAATCCACCA 58.518 29.630 0.00 0.00 0.00 4.17
482 590 8.887036 ACAGAATTTAAAGTTTTCAATCCACC 57.113 30.769 0.00 0.00 0.00 4.61
560 669 3.247173 CGCCAGCAAGCAAAACATTTTTA 59.753 39.130 0.00 0.00 0.00 1.52
565 674 1.005867 CCGCCAGCAAGCAAAACAT 60.006 52.632 0.00 0.00 0.00 2.71
572 681 4.362476 CCCAAACCGCCAGCAAGC 62.362 66.667 0.00 0.00 0.00 4.01
581 690 2.081462 AGAGTTAAATCGCCCAAACCG 58.919 47.619 0.00 0.00 0.00 4.44
589 698 2.094417 GTCCACAGCAGAGTTAAATCGC 59.906 50.000 10.35 10.35 0.00 4.58
668 781 2.658593 CACGATCGATGGCGTCCC 60.659 66.667 24.34 0.00 38.92 4.46
715 828 0.880278 GAACTCCAACAGCAGCGACA 60.880 55.000 0.00 0.00 0.00 4.35
718 831 2.328099 GGGAACTCCAACAGCAGCG 61.328 63.158 0.00 0.00 37.91 5.18
785 898 8.609617 TTCATCTAATCATATAGGGTACAGGG 57.390 38.462 0.00 0.00 0.00 4.45
842 1194 2.187958 TCAGGATGTAGGTGGTTGAGG 58.812 52.381 0.00 0.00 37.40 3.86
844 1196 2.304761 GGTTCAGGATGTAGGTGGTTGA 59.695 50.000 0.00 0.00 37.40 3.18
863 1215 7.147983 GCGTCAATTATAGATAGAGGAGATGGT 60.148 40.741 0.00 0.00 0.00 3.55
872 1224 6.420903 GCACTGTTGCGTCAATTATAGATAGA 59.579 38.462 0.00 0.00 39.50 1.98
873 1225 6.584954 GCACTGTTGCGTCAATTATAGATAG 58.415 40.000 0.00 0.00 39.50 2.08
874 1226 6.525121 GCACTGTTGCGTCAATTATAGATA 57.475 37.500 0.00 0.00 39.50 1.98
875 1227 5.409643 GCACTGTTGCGTCAATTATAGAT 57.590 39.130 0.00 0.00 39.50 1.98
900 1252 2.104792 TCCTTCCCTTGATAATGAGCGG 59.895 50.000 0.00 0.00 0.00 5.52
927 1279 4.264895 GGAGGAGTATATATCACCCAGGGT 60.265 50.000 4.76 4.76 35.62 4.34
929 1281 5.043732 AGAGGAGGAGTATATATCACCCAGG 60.044 48.000 0.00 0.00 0.00 4.45
951 1303 2.158623 AGTGTGGCCTGTGATTCAAAGA 60.159 45.455 3.32 0.00 0.00 2.52
953 1305 1.955778 CAGTGTGGCCTGTGATTCAAA 59.044 47.619 3.32 0.00 0.00 2.69
956 1308 1.808945 CTTCAGTGTGGCCTGTGATTC 59.191 52.381 3.32 0.00 34.02 2.52
957 1309 1.901591 CTTCAGTGTGGCCTGTGATT 58.098 50.000 3.32 0.00 34.02 2.57
959 1311 1.227943 GCTTCAGTGTGGCCTGTGA 60.228 57.895 3.32 0.00 34.02 3.58
971 1323 1.266175 CTTCAAGTGGTGCTGCTTCAG 59.734 52.381 0.00 0.00 34.12 3.02
974 1326 0.752743 TGCTTCAAGTGGTGCTGCTT 60.753 50.000 0.00 0.00 0.00 3.91
1014 1366 1.208293 GAAGCCAGGAGGAGTAGTTGG 59.792 57.143 0.00 0.00 36.89 3.77
1027 1379 1.675310 TTGCGGTGATGGAAGCCAG 60.675 57.895 0.00 0.00 36.75 4.85
1045 1397 0.599466 CCGCAGCTCATGATCATCGT 60.599 55.000 4.86 0.00 0.00 3.73
1305 1657 1.102978 CCAGGGAGGCAAATTAACGG 58.897 55.000 0.00 0.00 0.00 4.44
1317 1669 1.378250 CAGCTTCTTGGCCAGGGAG 60.378 63.158 18.97 18.97 0.00 4.30
1338 1721 6.710744 ACGATAACCACATTTCATAATCTCCC 59.289 38.462 0.00 0.00 0.00 4.30
1360 1743 4.500887 GCATACCCACTTGAGCTTATACGA 60.501 45.833 0.00 0.00 0.00 3.43
1378 1761 8.909708 ATACAACAACACAAATACATGCATAC 57.090 30.769 0.00 0.00 0.00 2.39
1382 1765 8.071122 ACAAATACAACAACACAAATACATGC 57.929 30.769 0.00 0.00 0.00 4.06
1401 1784 7.886338 TGTGCACCAAACATTACATACAAATA 58.114 30.769 15.69 0.00 0.00 1.40
1403 1786 6.149129 TGTGCACCAAACATTACATACAAA 57.851 33.333 15.69 0.00 0.00 2.83
1404 1787 5.774498 TGTGCACCAAACATTACATACAA 57.226 34.783 15.69 0.00 0.00 2.41
1407 1790 8.526978 ACATTATTGTGCACCAAACATTACATA 58.473 29.630 15.69 0.00 36.44 2.29
1408 1791 7.331440 CACATTATTGTGCACCAAACATTACAT 59.669 33.333 15.69 0.00 46.20 2.29
1409 1792 6.644181 CACATTATTGTGCACCAAACATTACA 59.356 34.615 15.69 0.00 46.20 2.41
1410 1793 7.048000 CACATTATTGTGCACCAAACATTAC 57.952 36.000 15.69 0.00 46.20 1.89
1425 1915 4.557296 GCATCGGATCCCAACACATTATTG 60.557 45.833 6.06 0.00 0.00 1.90
1431 1921 0.037447 TTGCATCGGATCCCAACACA 59.963 50.000 6.06 0.00 0.00 3.72
1433 1923 1.916506 TTTTGCATCGGATCCCAACA 58.083 45.000 6.06 0.00 0.00 3.33
1463 1973 8.729805 TTGCTTAAATTCATCCAAACACTTTT 57.270 26.923 0.00 0.00 0.00 2.27
1466 1976 7.288810 TCTTGCTTAAATTCATCCAAACACT 57.711 32.000 0.00 0.00 0.00 3.55
1516 2033 0.178921 CCATGGAGGCCTAGCTCCTA 60.179 60.000 4.42 0.00 40.28 2.94
1555 2072 2.286872 GTGGCTGTGAGATGATTCCTG 58.713 52.381 0.00 0.00 0.00 3.86
1563 2080 2.581354 GCGAGGTGGCTGTGAGAT 59.419 61.111 0.00 0.00 0.00 2.75
1567 2084 0.676466 TAATTGGCGAGGTGGCTGTG 60.676 55.000 0.00 0.00 45.14 3.66
1568 2085 0.037590 TTAATTGGCGAGGTGGCTGT 59.962 50.000 0.00 0.00 45.14 4.40
1571 2088 1.388547 TGATTAATTGGCGAGGTGGC 58.611 50.000 0.00 0.00 45.12 5.01
1593 2110 7.688918 AGGGATTCAAGAGATCAACTAATCT 57.311 36.000 0.00 0.00 38.72 2.40
1594 2111 8.210265 AGAAGGGATTCAAGAGATCAACTAATC 58.790 37.037 0.00 1.97 0.00 1.75
1595 2112 8.100135 AGAAGGGATTCAAGAGATCAACTAAT 57.900 34.615 0.00 0.00 0.00 1.73
1599 2116 5.588246 GGAAGAAGGGATTCAAGAGATCAAC 59.412 44.000 0.00 0.00 0.00 3.18
1636 2153 2.227388 GCAACACAAGTCCAAGGAGATG 59.773 50.000 0.00 0.00 0.00 2.90
1638 2155 1.490490 AGCAACACAAGTCCAAGGAGA 59.510 47.619 0.00 0.00 0.00 3.71
1648 2165 5.070770 AGAGATGAGAGTAGCAACACAAG 57.929 43.478 0.00 0.00 0.00 3.16
1654 2171 2.692557 GCAGGAGAGATGAGAGTAGCAA 59.307 50.000 0.00 0.00 0.00 3.91
1659 2176 1.113788 GCTGCAGGAGAGATGAGAGT 58.886 55.000 17.12 0.00 0.00 3.24
1660 2177 1.405872 AGCTGCAGGAGAGATGAGAG 58.594 55.000 17.12 0.00 0.00 3.20
1684 2201 0.820871 GACTCAGACGAGGGAAGCAT 59.179 55.000 0.00 0.00 44.17 3.79
1690 2207 0.391927 AGAGACGACTCAGACGAGGG 60.392 60.000 16.96 0.00 44.17 4.30
1700 2217 2.014128 GAAGCTCTAGCAGAGACGACT 58.986 52.381 14.86 0.00 45.07 4.18
1722 2239 2.296471 GTCGACATGGGTAGGTGGATAG 59.704 54.545 11.55 0.00 28.53 2.08
1731 2248 2.220615 CTGCCACGTCGACATGGGTA 62.221 60.000 29.97 17.95 36.41 3.69
1732 2249 3.589654 CTGCCACGTCGACATGGGT 62.590 63.158 29.97 10.33 36.41 4.51
1733 2250 2.815211 CTGCCACGTCGACATGGG 60.815 66.667 29.97 20.36 36.41 4.00
1779 2303 5.695041 GGTCCGTACCGAGCCTTATATAGG 61.695 54.167 2.44 0.00 40.76 2.57
1785 2309 3.924507 GGTCCGTACCGAGCCTTA 58.075 61.111 2.44 0.00 35.62 2.69
1795 2319 3.079578 GAGATACCGATCATGGTCCGTA 58.920 50.000 9.21 9.21 42.62 4.02
1797 2321 2.163509 AGAGATACCGATCATGGTCCG 58.836 52.381 0.00 0.00 42.62 4.79
1811 2335 7.847096 TGCCATGTGTAAAGACTAAAGAGATA 58.153 34.615 0.00 0.00 0.00 1.98
1813 2337 6.014584 TCTGCCATGTGTAAAGACTAAAGAGA 60.015 38.462 0.00 0.00 0.00 3.10
1818 2342 4.242475 CGTCTGCCATGTGTAAAGACTAA 58.758 43.478 0.00 0.00 36.05 2.24
1834 2358 3.179048 GTGATTAATTTTGGGCGTCTGC 58.821 45.455 0.00 0.00 41.71 4.26
1835 2359 4.165779 GTGTGATTAATTTTGGGCGTCTG 58.834 43.478 0.00 0.00 0.00 3.51
1836 2360 3.823873 TGTGTGATTAATTTTGGGCGTCT 59.176 39.130 0.00 0.00 0.00 4.18
1837 2361 3.917985 GTGTGTGATTAATTTTGGGCGTC 59.082 43.478 0.00 0.00 0.00 5.19
1838 2362 3.610585 CGTGTGTGATTAATTTTGGGCGT 60.611 43.478 0.00 0.00 0.00 5.68
1839 2363 2.914214 CGTGTGTGATTAATTTTGGGCG 59.086 45.455 0.00 0.00 0.00 6.13
1840 2364 2.666022 GCGTGTGTGATTAATTTTGGGC 59.334 45.455 0.00 0.00 0.00 5.36
1841 2365 4.165779 GAGCGTGTGTGATTAATTTTGGG 58.834 43.478 0.00 0.00 0.00 4.12
1842 2366 4.793071 TGAGCGTGTGTGATTAATTTTGG 58.207 39.130 0.00 0.00 0.00 3.28
1843 2367 5.340403 CACTGAGCGTGTGTGATTAATTTTG 59.660 40.000 0.00 0.00 38.84 2.44
1844 2368 5.451908 CACTGAGCGTGTGTGATTAATTTT 58.548 37.500 0.00 0.00 38.84 1.82
1845 2369 4.083324 CCACTGAGCGTGTGTGATTAATTT 60.083 41.667 0.00 0.00 42.20 1.82
1846 2370 3.436704 CCACTGAGCGTGTGTGATTAATT 59.563 43.478 0.00 0.00 42.20 1.40
1847 2371 3.002791 CCACTGAGCGTGTGTGATTAAT 58.997 45.455 0.00 0.00 42.20 1.40
1848 2372 2.412870 CCACTGAGCGTGTGTGATTAA 58.587 47.619 0.00 0.00 42.20 1.40
1849 2373 1.939381 GCCACTGAGCGTGTGTGATTA 60.939 52.381 0.00 0.00 42.20 1.75
1850 2374 1.230635 GCCACTGAGCGTGTGTGATT 61.231 55.000 0.00 0.00 42.20 2.57
1851 2375 1.669115 GCCACTGAGCGTGTGTGAT 60.669 57.895 0.00 0.00 42.20 3.06
1852 2376 2.280119 GCCACTGAGCGTGTGTGA 60.280 61.111 0.00 0.00 42.20 3.58
1860 2384 2.496817 CTAGGTCCGCCACTGAGC 59.503 66.667 0.00 0.00 37.19 4.26
1861 2385 2.496817 GCTAGGTCCGCCACTGAG 59.503 66.667 0.00 0.00 37.19 3.35
1862 2386 3.075005 GGCTAGGTCCGCCACTGA 61.075 66.667 3.05 0.00 46.77 3.41
1867 2391 4.162690 CAGTGGGCTAGGTCCGCC 62.163 72.222 0.00 0.00 46.83 6.13
1868 2392 4.162690 CCAGTGGGCTAGGTCCGC 62.163 72.222 0.00 0.00 38.20 5.54
1869 2393 3.470888 CCCAGTGGGCTAGGTCCG 61.471 72.222 17.33 0.00 35.35 4.79
1880 2404 4.351054 GCCCACCCTGACCCAGTG 62.351 72.222 0.00 0.00 0.00 3.66
1881 2405 2.706341 TTAGCCCACCCTGACCCAGT 62.706 60.000 0.00 0.00 0.00 4.00
1882 2406 1.281925 ATTAGCCCACCCTGACCCAG 61.282 60.000 0.00 0.00 0.00 4.45
1883 2407 0.045008 TATTAGCCCACCCTGACCCA 59.955 55.000 0.00 0.00 0.00 4.51
1884 2408 0.765510 CTATTAGCCCACCCTGACCC 59.234 60.000 0.00 0.00 0.00 4.46
1885 2409 1.141053 CACTATTAGCCCACCCTGACC 59.859 57.143 0.00 0.00 0.00 4.02
1886 2410 1.838077 ACACTATTAGCCCACCCTGAC 59.162 52.381 0.00 0.00 0.00 3.51
1887 2411 2.263895 ACACTATTAGCCCACCCTGA 57.736 50.000 0.00 0.00 0.00 3.86
1888 2412 2.224305 GCTACACTATTAGCCCACCCTG 60.224 54.545 0.00 0.00 38.91 4.45
1889 2413 2.047830 GCTACACTATTAGCCCACCCT 58.952 52.381 0.00 0.00 38.91 4.34
1890 2414 2.047830 AGCTACACTATTAGCCCACCC 58.952 52.381 0.00 0.00 44.93 4.61
1891 2415 2.434702 ACAGCTACACTATTAGCCCACC 59.565 50.000 0.00 0.00 44.93 4.61
1892 2416 3.821421 ACAGCTACACTATTAGCCCAC 57.179 47.619 0.00 0.00 44.93 4.61
1893 2417 4.283337 TGTACAGCTACACTATTAGCCCA 58.717 43.478 0.00 0.00 44.93 5.36
1894 2418 4.931661 TGTACAGCTACACTATTAGCCC 57.068 45.455 0.00 0.00 44.93 5.19
1895 2419 8.737175 TGTATATGTACAGCTACACTATTAGCC 58.263 37.037 13.51 0.00 44.93 3.93
1958 2482 9.354673 CCCTGAGATTTGAAAATAGCCTTTATA 57.645 33.333 0.00 0.00 0.00 0.98
1959 2483 7.841222 ACCCTGAGATTTGAAAATAGCCTTTAT 59.159 33.333 0.00 0.00 0.00 1.40
1960 2484 7.122650 CACCCTGAGATTTGAAAATAGCCTTTA 59.877 37.037 0.00 0.00 0.00 1.85
1961 2485 6.019108 ACCCTGAGATTTGAAAATAGCCTTT 58.981 36.000 0.00 0.00 0.00 3.11
1962 2486 5.420104 CACCCTGAGATTTGAAAATAGCCTT 59.580 40.000 0.00 0.00 0.00 4.35
1963 2487 4.952335 CACCCTGAGATTTGAAAATAGCCT 59.048 41.667 0.00 0.00 0.00 4.58
1964 2488 4.098501 CCACCCTGAGATTTGAAAATAGCC 59.901 45.833 0.00 0.00 0.00 3.93
1965 2489 4.098501 CCCACCCTGAGATTTGAAAATAGC 59.901 45.833 0.00 0.00 0.00 2.97
1966 2490 4.098501 GCCCACCCTGAGATTTGAAAATAG 59.901 45.833 0.00 0.00 0.00 1.73
1967 2491 4.023291 GCCCACCCTGAGATTTGAAAATA 58.977 43.478 0.00 0.00 0.00 1.40
1968 2492 2.833943 GCCCACCCTGAGATTTGAAAAT 59.166 45.455 0.00 0.00 0.00 1.82
1969 2493 2.247358 GCCCACCCTGAGATTTGAAAA 58.753 47.619 0.00 0.00 0.00 2.29
1970 2494 1.549950 GGCCCACCCTGAGATTTGAAA 60.550 52.381 0.00 0.00 0.00 2.69
1971 2495 0.039618 GGCCCACCCTGAGATTTGAA 59.960 55.000 0.00 0.00 0.00 2.69
1972 2496 1.139498 TGGCCCACCCTGAGATTTGA 61.139 55.000 0.00 0.00 33.59 2.69
1973 2497 0.967380 GTGGCCCACCCTGAGATTTG 60.967 60.000 1.17 0.00 33.59 2.32
1974 2498 1.384191 GTGGCCCACCCTGAGATTT 59.616 57.895 1.17 0.00 33.59 2.17
1975 2499 2.971598 CGTGGCCCACCCTGAGATT 61.972 63.158 8.62 0.00 33.59 2.40
1976 2500 3.402681 CGTGGCCCACCCTGAGAT 61.403 66.667 8.62 0.00 33.59 2.75
1991 2515 3.626924 GTGGACAGGGTGAGCCGT 61.627 66.667 0.00 0.00 34.97 5.68
1992 2516 4.394712 GGTGGACAGGGTGAGCCG 62.395 72.222 0.00 0.00 34.97 5.52
1993 2517 4.035102 GGGTGGACAGGGTGAGCC 62.035 72.222 0.00 0.00 0.00 4.70
1994 2518 2.930562 AGGGTGGACAGGGTGAGC 60.931 66.667 0.00 0.00 0.00 4.26
1995 2519 0.041238 TAGAGGGTGGACAGGGTGAG 59.959 60.000 0.00 0.00 0.00 3.51
1996 2520 0.252103 GTAGAGGGTGGACAGGGTGA 60.252 60.000 0.00 0.00 0.00 4.02
1997 2521 1.265454 GGTAGAGGGTGGACAGGGTG 61.265 65.000 0.00 0.00 0.00 4.61
1998 2522 1.080538 GGTAGAGGGTGGACAGGGT 59.919 63.158 0.00 0.00 0.00 4.34
1999 2523 0.688087 GAGGTAGAGGGTGGACAGGG 60.688 65.000 0.00 0.00 0.00 4.45
2000 2524 0.688087 GGAGGTAGAGGGTGGACAGG 60.688 65.000 0.00 0.00 0.00 4.00
2001 2525 1.038130 CGGAGGTAGAGGGTGGACAG 61.038 65.000 0.00 0.00 0.00 3.51
2002 2526 1.000019 CGGAGGTAGAGGGTGGACA 60.000 63.158 0.00 0.00 0.00 4.02
2003 2527 1.000107 ACGGAGGTAGAGGGTGGAC 60.000 63.158 0.00 0.00 0.00 4.02
2004 2528 1.305623 GACGGAGGTAGAGGGTGGA 59.694 63.158 0.00 0.00 0.00 4.02
2005 2529 1.000019 TGACGGAGGTAGAGGGTGG 60.000 63.158 0.00 0.00 0.00 4.61
2006 2530 0.323542 AGTGACGGAGGTAGAGGGTG 60.324 60.000 0.00 0.00 0.00 4.61
2007 2531 0.323542 CAGTGACGGAGGTAGAGGGT 60.324 60.000 0.00 0.00 0.00 4.34
2008 2532 1.668101 GCAGTGACGGAGGTAGAGGG 61.668 65.000 0.00 0.00 0.00 4.30
2009 2533 0.965866 TGCAGTGACGGAGGTAGAGG 60.966 60.000 0.00 0.00 0.00 3.69
2010 2534 0.171455 GTGCAGTGACGGAGGTAGAG 59.829 60.000 0.00 0.00 0.00 2.43
2011 2535 0.538746 TGTGCAGTGACGGAGGTAGA 60.539 55.000 0.00 0.00 0.00 2.59
2012 2536 0.532573 ATGTGCAGTGACGGAGGTAG 59.467 55.000 0.00 0.00 0.00 3.18
2013 2537 0.246360 CATGTGCAGTGACGGAGGTA 59.754 55.000 0.00 0.00 0.00 3.08
2014 2538 1.004560 CATGTGCAGTGACGGAGGT 60.005 57.895 0.00 0.00 0.00 3.85
2015 2539 2.393768 GCATGTGCAGTGACGGAGG 61.394 63.158 0.00 0.00 41.59 4.30
2016 2540 1.357258 GAGCATGTGCAGTGACGGAG 61.357 60.000 7.83 0.00 45.16 4.63
2017 2541 1.374631 GAGCATGTGCAGTGACGGA 60.375 57.895 7.83 0.00 45.16 4.69
2018 2542 2.733671 CGAGCATGTGCAGTGACGG 61.734 63.158 7.83 0.00 45.16 4.79
2019 2543 0.732538 TACGAGCATGTGCAGTGACG 60.733 55.000 7.83 9.41 45.16 4.35
2020 2544 0.716108 GTACGAGCATGTGCAGTGAC 59.284 55.000 7.83 0.00 45.16 3.67
2021 2545 0.389817 GGTACGAGCATGTGCAGTGA 60.390 55.000 7.83 0.00 45.16 3.41
2022 2546 0.390340 AGGTACGAGCATGTGCAGTG 60.390 55.000 7.83 0.00 45.16 3.66
2023 2547 1.135139 CTAGGTACGAGCATGTGCAGT 59.865 52.381 7.83 9.19 45.16 4.40
2024 2548 1.845266 CTAGGTACGAGCATGTGCAG 58.155 55.000 7.83 3.55 45.16 4.41
2033 2557 2.632541 CGGCGAGCTAGGTACGAG 59.367 66.667 0.00 6.62 0.00 4.18
2034 2558 3.580193 GCGGCGAGCTAGGTACGA 61.580 66.667 12.98 0.00 44.04 3.43
2062 2586 3.274586 CATGACCATGGCGGCGAG 61.275 66.667 12.98 0.00 39.03 5.03
2162 2686 3.292481 AAGGAGCAGGCCATGGTGG 62.292 63.158 14.67 4.30 40.53 4.61
2163 2687 1.751927 GAAGGAGCAGGCCATGGTG 60.752 63.158 14.67 5.73 40.53 4.17
2164 2688 2.679716 GAAGGAGCAGGCCATGGT 59.320 61.111 14.67 6.00 44.02 3.55
2165 2689 2.123982 GGAAGGAGCAGGCCATGG 60.124 66.667 7.63 7.63 0.00 3.66
2166 2690 2.123982 GGGAAGGAGCAGGCCATG 60.124 66.667 5.01 0.97 0.00 3.66
2167 2691 2.286732 AGGGAAGGAGCAGGCCAT 60.287 61.111 5.01 0.00 0.00 4.40
2168 2692 3.333219 CAGGGAAGGAGCAGGCCA 61.333 66.667 5.01 0.00 0.00 5.36
2169 2693 4.811364 GCAGGGAAGGAGCAGGCC 62.811 72.222 0.00 0.00 0.00 5.19
2170 2694 3.695747 GAGCAGGGAAGGAGCAGGC 62.696 68.421 0.00 0.00 0.00 4.85
2171 2695 2.588989 GAGCAGGGAAGGAGCAGG 59.411 66.667 0.00 0.00 0.00 4.85
2172 2696 2.186384 CGAGCAGGGAAGGAGCAG 59.814 66.667 0.00 0.00 0.00 4.24
2173 2697 4.087892 GCGAGCAGGGAAGGAGCA 62.088 66.667 0.00 0.00 0.00 4.26
2174 2698 4.847444 GGCGAGCAGGGAAGGAGC 62.847 72.222 0.00 0.00 0.00 4.70
2175 2699 4.168291 GGGCGAGCAGGGAAGGAG 62.168 72.222 0.00 0.00 0.00 3.69
2272 2796 4.598894 CATGAGCGGGGAGGAGCG 62.599 72.222 0.00 0.00 38.61 5.03
2273 2797 4.925861 GCATGAGCGGGGAGGAGC 62.926 72.222 0.00 0.00 0.00 4.70
2274 2798 4.247380 GGCATGAGCGGGGAGGAG 62.247 72.222 0.00 0.00 43.41 3.69
2283 2807 3.945434 CATGACGGCGGCATGAGC 61.945 66.667 44.41 10.28 44.49 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.