Multiple sequence alignment - TraesCS2A01G556000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G556000 chr2A 100.000 3906 0 0 1 3906 760305868 760309773 0.000000e+00 7214.0
1 TraesCS2A01G556000 chr2A 85.153 687 79 14 2006 2687 760298486 760297818 0.000000e+00 682.0
2 TraesCS2A01G556000 chr2A 81.460 507 55 21 872 1349 760302157 760301661 2.850000e-101 379.0
3 TraesCS2A01G556000 chr2A 84.091 352 33 14 1525 1870 760301474 760301140 6.300000e-83 318.0
4 TraesCS2A01G556000 chr2A 78.146 453 54 24 3263 3707 760493923 760494338 3.010000e-61 246.0
5 TraesCS2A01G556000 chr2A 78.261 437 43 24 3273 3699 760459908 760460302 2.350000e-57 233.0
6 TraesCS2A01G556000 chr2D 93.601 1641 54 12 1417 3053 630839526 630837933 0.000000e+00 2401.0
7 TraesCS2A01G556000 chr2D 97.761 670 12 2 711 1377 630840180 630839511 0.000000e+00 1151.0
8 TraesCS2A01G556000 chr2D 82.964 1174 140 38 1530 2688 630953616 630954744 0.000000e+00 1005.0
9 TraesCS2A01G556000 chr2D 93.077 650 40 3 69 714 630843932 630843284 0.000000e+00 946.0
10 TraesCS2A01G556000 chr2D 90.318 661 34 21 3057 3698 630835984 630835335 0.000000e+00 839.0
11 TraesCS2A01G556000 chr2D 79.484 697 71 38 684 1349 630952776 630953431 2.790000e-116 429.0
12 TraesCS2A01G556000 chr2D 91.960 199 15 1 3413 3611 630679392 630679195 1.070000e-70 278.0
13 TraesCS2A01G556000 chr2D 76.543 405 60 23 870 1252 630321296 630320905 5.150000e-44 189.0
14 TraesCS2A01G556000 chr2D 86.164 159 20 1 3107 3263 507444185 507444027 1.870000e-38 171.0
15 TraesCS2A01G556000 chr2D 85.827 127 18 0 337 463 162759717 162759591 6.810000e-28 135.0
16 TraesCS2A01G556000 chr2D 82.540 126 22 0 337 462 413418650 413418525 1.150000e-20 111.0
17 TraesCS2A01G556000 chr2B 90.493 1725 62 44 1941 3650 773900565 773898928 0.000000e+00 2183.0
18 TraesCS2A01G556000 chr2B 82.638 1175 144 38 1525 2685 774368067 774366939 0.000000e+00 985.0
19 TraesCS2A01G556000 chr2B 79.191 346 52 13 3270 3611 774639641 774639970 5.080000e-54 222.0
20 TraesCS2A01G556000 chr2B 78.902 346 53 13 3270 3611 774614815 774615144 2.360000e-52 217.0
21 TraesCS2A01G556000 chr2B 78.261 345 53 15 3270 3609 774655984 774656311 6.620000e-48 202.0
22 TraesCS2A01G556000 chr2B 80.505 277 24 11 722 995 774369442 774369193 6.660000e-43 185.0
23 TraesCS2A01G556000 chr2B 83.721 129 21 0 337 465 369827465 369827337 5.300000e-24 122.0
24 TraesCS2A01G556000 chr2B 95.522 67 3 0 3619 3685 774615128 774615194 1.480000e-19 108.0
25 TraesCS2A01G556000 chr2B 94.030 67 4 0 3619 3685 774639954 774640020 6.900000e-18 102.0
26 TraesCS2A01G556000 chr2B 100.000 46 0 0 1966 2011 773900638 773900593 6.950000e-13 86.1
27 TraesCS2A01G556000 chr2B 92.857 56 4 0 3208 3263 642815889 642815834 9.000000e-12 82.4
28 TraesCS2A01G556000 chr3D 80.044 451 42 19 2823 3226 519305663 519305214 1.370000e-74 291.0
29 TraesCS2A01G556000 chr3D 89.048 210 19 3 3698 3906 429633990 429634196 1.390000e-64 257.0
30 TraesCS2A01G556000 chr3D 75.847 472 94 14 26 487 467482038 467482499 5.080000e-54 222.0
31 TraesCS2A01G556000 chr3D 77.534 365 73 8 28 385 291314806 291314444 1.100000e-50 211.0
32 TraesCS2A01G556000 chr3D 77.992 259 45 9 3013 3260 110320957 110321214 6.760000e-33 152.0
33 TraesCS2A01G556000 chr3B 80.966 352 61 4 1 346 825974487 825974136 1.380000e-69 274.0
34 TraesCS2A01G556000 chr6D 89.573 211 20 2 3697 3906 3594755 3594546 2.310000e-67 267.0
35 TraesCS2A01G556000 chr6D 79.235 366 67 7 28 385 97508660 97509024 3.010000e-61 246.0
36 TraesCS2A01G556000 chr1B 90.164 183 17 1 3724 3906 4081538 4081719 1.810000e-58 237.0
37 TraesCS2A01G556000 chr7B 86.603 209 26 2 3698 3905 745225345 745225138 3.040000e-56 230.0
38 TraesCS2A01G556000 chr1D 78.592 355 64 10 34 379 368612465 368612114 1.410000e-54 224.0
39 TraesCS2A01G556000 chr1D 86.164 159 20 1 3107 3263 75848225 75848067 1.870000e-38 171.0
40 TraesCS2A01G556000 chr4D 78.056 360 71 6 34 385 91002843 91002484 1.830000e-53 220.0
41 TraesCS2A01G556000 chr7A 77.716 359 73 5 34 385 527613656 527613298 3.060000e-51 213.0
42 TraesCS2A01G556000 chr5B 77.937 349 71 4 28 370 142448652 142449000 3.060000e-51 213.0
43 TraesCS2A01G556000 chr5B 92.913 127 9 0 3780 3906 441120873 441120999 6.660000e-43 185.0
44 TraesCS2A01G556000 chr5B 94.118 85 3 2 3698 3781 441117809 441117892 1.140000e-25 128.0
45 TraesCS2A01G556000 chr3A 79.923 259 40 9 3013 3260 730980909 730981166 3.100000e-41 180.0
46 TraesCS2A01G556000 chr3A 79.921 254 39 9 3013 3255 644889053 644889305 4.010000e-40 176.0
47 TraesCS2A01G556000 chr1A 79.771 262 41 10 3013 3263 90996834 90996574 3.100000e-41 180.0
48 TraesCS2A01G556000 chr5D 85.246 122 18 0 337 458 499328819 499328698 4.100000e-25 126.0
49 TraesCS2A01G556000 chr7D 81.102 127 24 0 337 463 122742928 122742802 6.900000e-18 102.0
50 TraesCS2A01G556000 chr6B 80.620 129 21 3 337 463 410564587 410564461 3.210000e-16 97.1
51 TraesCS2A01G556000 chr4B 79.528 127 26 0 337 463 627403201 627403327 1.490000e-14 91.6
52 TraesCS2A01G556000 chr6A 75.294 170 26 12 3013 3171 480047303 480047139 2.520000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G556000 chr2A 760305868 760309773 3905 False 7214.000000 7214 100.00000 1 3906 1 chr2A.!!$F1 3905
1 TraesCS2A01G556000 chr2A 760297818 760302157 4339 True 459.666667 682 83.56800 872 2687 3 chr2A.!!$R1 1815
2 TraesCS2A01G556000 chr2D 630835335 630843932 8597 True 1334.250000 2401 93.68925 69 3698 4 chr2D.!!$R6 3629
3 TraesCS2A01G556000 chr2D 630952776 630954744 1968 False 717.000000 1005 81.22400 684 2688 2 chr2D.!!$F1 2004
4 TraesCS2A01G556000 chr2B 773898928 773900638 1710 True 1134.550000 2183 95.24650 1941 3650 2 chr2B.!!$R3 1709
5 TraesCS2A01G556000 chr2B 774366939 774369442 2503 True 585.000000 985 81.57150 722 2685 2 chr2B.!!$R4 1963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.039074 CTCTTTGTCTGTCGCGTCCT 60.039 55.0 5.77 0.0 0.00 3.85 F
109 113 0.103937 GGTCATCTCCTTCTGCTCCG 59.896 60.0 0.00 0.0 0.00 4.63 F
424 428 0.324614 TCAATGCCGACACCAGTGAT 59.675 50.0 4.48 0.0 33.03 3.06 F
701 705 0.370273 CACTATCGTGGCGCTTGTTC 59.630 55.0 7.64 0.0 37.50 3.18 F
1724 5470 0.616891 AAATCGGGTGGGAGGTACAC 59.383 55.0 0.00 0.0 38.10 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 5458 0.178068 ATGATGCGTGTACCTCCCAC 59.822 55.0 0.00 0.0 0.00 4.61 R
1798 5544 1.534729 GTGGGAAAACCTAGCCAGTG 58.465 55.0 0.00 0.0 41.11 3.66 R
1812 5558 1.609635 ATCACCGTACATGCGTGGGA 61.610 55.0 11.36 0.0 0.00 4.37 R
2364 8656 1.734388 GCAACCACCACACCTCCAAC 61.734 60.0 0.00 0.0 0.00 3.77 R
2984 9289 0.545171 ACGGTCGGAGATGAGAGGTA 59.455 55.0 0.00 0.0 40.67 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.985847 GGGTTGCGCTGGCTCTTT 60.986 61.111 9.73 0.00 40.82 2.52
19 20 2.555547 GGTTGCGCTGGCTCTTTGT 61.556 57.895 9.73 0.00 40.82 2.83
20 21 1.081840 GTTGCGCTGGCTCTTTGTC 60.082 57.895 9.73 0.00 40.82 3.18
21 22 1.227943 TTGCGCTGGCTCTTTGTCT 60.228 52.632 9.73 0.00 40.82 3.41
22 23 1.509644 TTGCGCTGGCTCTTTGTCTG 61.510 55.000 9.73 0.00 40.82 3.51
23 24 1.963338 GCGCTGGCTCTTTGTCTGT 60.963 57.895 0.00 0.00 35.83 3.41
24 25 1.905922 GCGCTGGCTCTTTGTCTGTC 61.906 60.000 0.00 0.00 35.83 3.51
25 26 1.621301 CGCTGGCTCTTTGTCTGTCG 61.621 60.000 0.00 0.00 0.00 4.35
26 27 1.905922 GCTGGCTCTTTGTCTGTCGC 61.906 60.000 0.00 0.00 0.00 5.19
27 28 1.621301 CTGGCTCTTTGTCTGTCGCG 61.621 60.000 0.00 0.00 0.00 5.87
28 29 1.664965 GGCTCTTTGTCTGTCGCGT 60.665 57.895 5.77 0.00 0.00 6.01
29 30 1.618640 GGCTCTTTGTCTGTCGCGTC 61.619 60.000 5.77 0.00 0.00 5.19
31 32 0.039074 CTCTTTGTCTGTCGCGTCCT 60.039 55.000 5.77 0.00 0.00 3.85
32 33 0.387929 TCTTTGTCTGTCGCGTCCTT 59.612 50.000 5.77 0.00 0.00 3.36
33 34 0.784778 CTTTGTCTGTCGCGTCCTTC 59.215 55.000 5.77 0.00 0.00 3.46
36 37 0.317160 TGTCTGTCGCGTCCTTCATT 59.683 50.000 5.77 0.00 0.00 2.57
37 38 0.716108 GTCTGTCGCGTCCTTCATTG 59.284 55.000 5.77 0.00 0.00 2.82
38 39 0.389817 TCTGTCGCGTCCTTCATTGG 60.390 55.000 5.77 0.00 0.00 3.16
39 40 1.361668 CTGTCGCGTCCTTCATTGGG 61.362 60.000 5.77 0.00 0.00 4.12
41 42 1.079405 TCGCGTCCTTCATTGGGAC 60.079 57.895 5.77 3.08 46.93 4.46
44 45 3.905249 GTCCTTCATTGGGACGCC 58.095 61.111 0.00 0.00 42.84 5.68
45 46 2.106683 GTCCTTCATTGGGACGCCG 61.107 63.158 0.00 0.00 42.84 6.46
46 47 3.508840 CCTTCATTGGGACGCCGC 61.509 66.667 0.00 0.00 0.00 6.53
48 49 4.337177 TTCATTGGGACGCCGCCA 62.337 61.111 0.33 0.00 0.00 5.69
50 51 3.585990 CATTGGGACGCCGCCATC 61.586 66.667 0.33 0.00 0.00 3.51
51 52 4.875713 ATTGGGACGCCGCCATCC 62.876 66.667 0.35 0.35 0.00 3.51
56 57 4.899239 GACGCCGCCATCCTCCAG 62.899 72.222 0.00 0.00 0.00 3.86
63 64 2.119655 GCCATCCTCCAGCTGCTTG 61.120 63.158 8.66 0.00 0.00 4.01
64 65 2.119655 CCATCCTCCAGCTGCTTGC 61.120 63.158 8.66 0.00 43.29 4.01
66 67 3.694058 ATCCTCCAGCTGCTTGCCG 62.694 63.158 8.66 0.00 44.23 5.69
109 113 0.103937 GGTCATCTCCTTCTGCTCCG 59.896 60.000 0.00 0.00 0.00 4.63
111 115 1.227497 CATCTCCTTCTGCTCCGGC 60.227 63.158 0.00 0.00 39.26 6.13
140 144 2.359107 CCAGAGAGCTTTGGCGCA 60.359 61.111 10.83 0.00 44.37 6.09
142 146 1.962822 CAGAGAGCTTTGGCGCACA 60.963 57.895 10.83 1.22 44.37 4.57
209 213 2.154462 GCGGATGAATTCTGGTATGGG 58.846 52.381 7.05 0.00 0.00 4.00
265 269 1.448893 GGACGAATAAGTGGCGCCA 60.449 57.895 29.03 29.03 0.00 5.69
303 307 1.349688 ACCGTGTGTCATAATGTGGGT 59.650 47.619 0.00 0.00 0.00 4.51
317 321 3.998672 GGGTGGCAGACGGACGAA 61.999 66.667 0.00 0.00 0.00 3.85
341 345 1.135053 TCGGCCGTCGTATCATTTGAA 60.135 47.619 27.15 0.00 40.32 2.69
343 347 2.004017 GGCCGTCGTATCATTTGAACA 58.996 47.619 0.00 0.00 0.00 3.18
416 420 3.430862 GCCGCTTCAATGCCGACA 61.431 61.111 0.00 0.00 0.00 4.35
424 428 0.324614 TCAATGCCGACACCAGTGAT 59.675 50.000 4.48 0.00 33.03 3.06
425 429 1.167851 CAATGCCGACACCAGTGATT 58.832 50.000 4.48 0.00 30.46 2.57
469 473 5.011451 GCATGAATGCGACACTAATACTC 57.989 43.478 0.00 0.00 44.67 2.59
485 489 1.227205 CTCTGGAGCGATGCTGACC 60.227 63.158 0.00 0.00 39.88 4.02
496 500 0.609131 ATGCTGACCGTTTTGGGAGG 60.609 55.000 0.00 0.00 44.64 4.30
498 502 1.758592 CTGACCGTTTTGGGAGGGA 59.241 57.895 0.00 0.00 44.64 4.20
520 524 3.770040 CGTGTGGGCGAGGGATGA 61.770 66.667 0.00 0.00 0.00 2.92
572 576 4.681978 GGCAGCGGTCCAGACGTT 62.682 66.667 0.00 0.00 0.00 3.99
598 602 3.162666 AGACCACGTTAGATGACTTCCA 58.837 45.455 0.00 0.00 0.00 3.53
599 603 3.769844 AGACCACGTTAGATGACTTCCAT 59.230 43.478 0.00 0.00 38.43 3.41
600 604 3.861840 ACCACGTTAGATGACTTCCATG 58.138 45.455 0.00 0.00 35.17 3.66
612 616 5.164620 TGACTTCCATGATTTAGACAGCA 57.835 39.130 0.00 0.00 0.00 4.41
639 643 9.315525 TGATCCGAATATATACAAACGTTTTGA 57.684 29.630 11.66 2.15 0.00 2.69
666 670 1.143684 GAATGGAGATGCCTAAGCCCA 59.856 52.381 0.00 0.00 38.69 5.36
678 682 3.537580 CCTAAGCCCACAAATTACGCTA 58.462 45.455 0.00 0.00 0.00 4.26
680 684 1.379527 AGCCCACAAATTACGCTAGC 58.620 50.000 4.06 4.06 0.00 3.42
682 686 1.021968 CCCACAAATTACGCTAGCCC 58.978 55.000 9.66 0.00 0.00 5.19
701 705 0.370273 CACTATCGTGGCGCTTGTTC 59.630 55.000 7.64 0.00 37.50 3.18
835 3950 5.984323 CGGGTTAGAAAATAGAAGGCTAGAC 59.016 44.000 0.00 0.00 0.00 2.59
997 4122 1.061711 CGCTTCTTCTGCCAAAGATCG 59.938 52.381 0.00 3.41 35.30 3.69
1065 4755 2.331451 GTCGCCGTGCTGCTTTTT 59.669 55.556 0.00 0.00 0.00 1.94
1238 4934 0.894835 ATTCAAACACCGGGATTGCC 59.105 50.000 6.32 0.00 0.00 4.52
1274 4973 4.278669 GGATGCGAGTAAATCTGAGTCCTA 59.721 45.833 0.00 0.00 0.00 2.94
1295 4994 9.617975 GTCCTATAAAACCTATGACGTATGTAC 57.382 37.037 0.00 0.00 0.00 2.90
1399 5106 9.618890 TTTTTGAATTGTTTGGATTGGTTATCA 57.381 25.926 0.00 0.00 34.77 2.15
1400 5107 8.600449 TTTGAATTGTTTGGATTGGTTATCAC 57.400 30.769 0.00 0.00 34.77 3.06
1401 5108 7.295322 TGAATTGTTTGGATTGGTTATCACA 57.705 32.000 0.00 0.00 34.77 3.58
1403 5110 9.029368 TGAATTGTTTGGATTGGTTATCACATA 57.971 29.630 0.00 0.00 34.77 2.29
1406 5113 8.586879 TTGTTTGGATTGGTTATCACATATCA 57.413 30.769 0.00 0.00 34.77 2.15
1408 5115 6.859420 TTGGATTGGTTATCACATATCACG 57.141 37.500 0.00 0.00 34.77 4.35
1409 5116 5.924356 TGGATTGGTTATCACATATCACGT 58.076 37.500 0.00 0.00 34.77 4.49
1410 5117 5.757808 TGGATTGGTTATCACATATCACGTG 59.242 40.000 9.94 9.94 34.77 4.49
1411 5118 5.179368 GGATTGGTTATCACATATCACGTGG 59.821 44.000 17.00 1.33 34.77 4.94
1412 5119 4.746535 TGGTTATCACATATCACGTGGT 57.253 40.909 17.00 12.05 35.03 4.16
1413 5120 5.092554 TGGTTATCACATATCACGTGGTT 57.907 39.130 17.00 6.43 35.03 3.67
1415 5122 6.044046 TGGTTATCACATATCACGTGGTTAC 58.956 40.000 17.00 1.51 35.03 2.50
1416 5123 6.127281 TGGTTATCACATATCACGTGGTTACT 60.127 38.462 17.00 0.00 35.03 2.24
1417 5124 7.068470 TGGTTATCACATATCACGTGGTTACTA 59.932 37.037 17.00 0.00 35.03 1.82
1418 5125 8.086522 GGTTATCACATATCACGTGGTTACTAT 58.913 37.037 17.00 2.86 35.03 2.12
1422 5129 8.229253 TCACATATCACGTGGTTACTATTAGT 57.771 34.615 17.00 1.30 35.03 2.24
1423 5130 9.341078 TCACATATCACGTGGTTACTATTAGTA 57.659 33.333 17.00 0.00 35.03 1.82
1466 5212 8.534333 AATATTACTAACAGTGATATGCGTGG 57.466 34.615 0.00 0.00 36.68 4.94
1518 5264 8.974408 ACTAAAATTTTATTCTTGGTCGTTTGC 58.026 29.630 10.97 0.00 0.00 3.68
1519 5265 6.779115 AAATTTTATTCTTGGTCGTTTGCC 57.221 33.333 0.00 0.00 0.00 4.52
1527 5273 1.806758 GGTCGTTTGCCATGCATGC 60.807 57.895 21.69 11.82 38.76 4.06
1595 5341 1.754803 TCGGCTGGTTACTATGGAGTG 59.245 52.381 0.00 0.00 36.28 3.51
1640 5386 3.605922 CGTTGTCGCTAAGCAACAATCAA 60.606 43.478 5.58 0.00 43.52 2.57
1712 5458 1.064060 GAGAACGCCATCAAAATCGGG 59.936 52.381 0.00 0.00 0.00 5.14
1724 5470 0.616891 AAATCGGGTGGGAGGTACAC 59.383 55.000 0.00 0.00 38.10 2.90
1733 5479 2.037251 GTGGGAGGTACACGCATCATAT 59.963 50.000 10.92 0.00 43.92 1.78
1734 5480 3.257375 GTGGGAGGTACACGCATCATATA 59.743 47.826 10.92 0.00 43.92 0.86
1748 5494 9.237846 CACGCATCATATATACTACTACAATGG 57.762 37.037 0.00 0.00 0.00 3.16
1749 5495 8.967918 ACGCATCATATATACTACTACAATGGT 58.032 33.333 0.00 0.00 0.00 3.55
1812 5558 4.687901 AATTTTGCACTGGCTAGGTTTT 57.312 36.364 0.85 0.00 41.91 2.43
1937 5686 9.699703 TTAGTGCATATGTACGAGCAATATTTA 57.300 29.630 16.86 0.00 37.39 1.40
1938 5687 8.601845 AGTGCATATGTACGAGCAATATTTAA 57.398 30.769 16.86 0.00 38.91 1.52
2152 8440 6.598753 ATCTTGGTGTACATATACAAACGC 57.401 37.500 0.00 0.00 42.99 4.84
2755 9053 7.949903 GCCACATGCAAAATATTATGATTGA 57.050 32.000 0.00 0.00 40.77 2.57
2756 9054 8.367943 GCCACATGCAAAATATTATGATTGAA 57.632 30.769 0.00 0.00 40.77 2.69
2757 9055 8.828644 GCCACATGCAAAATATTATGATTGAAA 58.171 29.630 0.00 0.00 40.77 2.69
2868 9173 8.693120 TGTGTCACCTACCATTTTATTTAACA 57.307 30.769 0.00 0.00 0.00 2.41
2948 9253 2.702898 TTTCACAATGGATGCACACG 57.297 45.000 0.00 0.00 0.00 4.49
2983 9288 1.536766 CTGCCGCAAATCTTGTCTTCA 59.463 47.619 0.00 0.00 0.00 3.02
2984 9289 2.161855 TGCCGCAAATCTTGTCTTCAT 58.838 42.857 0.00 0.00 0.00 2.57
3008 9313 0.378962 CTCATCTCCGACCGTCACTC 59.621 60.000 0.00 0.00 0.00 3.51
3009 9314 1.062685 CATCTCCGACCGTCACTCG 59.937 63.158 0.00 0.00 39.52 4.18
3010 9315 1.078637 ATCTCCGACCGTCACTCGA 60.079 57.895 0.00 0.00 42.86 4.04
3011 9316 1.367599 ATCTCCGACCGTCACTCGAC 61.368 60.000 0.00 0.00 42.86 4.20
3012 9317 2.031616 TCCGACCGTCACTCGACT 59.968 61.111 0.00 0.00 42.86 4.18
3013 9318 1.968703 CTCCGACCGTCACTCGACTC 61.969 65.000 0.00 0.00 42.86 3.36
3014 9319 2.033755 CCGACCGTCACTCGACTCT 61.034 63.158 0.00 0.00 42.86 3.24
3015 9320 1.420702 CGACCGTCACTCGACTCTC 59.579 63.158 0.00 0.00 42.86 3.20
3022 9327 2.351835 CGTCACTCGACTCTCCACAATT 60.352 50.000 0.00 0.00 42.86 2.32
3027 9332 4.800993 CACTCGACTCTCCACAATTATCAC 59.199 45.833 0.00 0.00 0.00 3.06
3053 9358 7.304054 TCCTAGATATTCCCATCCTATCACT 57.696 40.000 0.00 0.00 0.00 3.41
3054 9359 7.358263 TCCTAGATATTCCCATCCTATCACTC 58.642 42.308 0.00 0.00 0.00 3.51
3089 11339 4.952957 TCTGGGTTCACTTTGTTTGATTCA 59.047 37.500 0.00 0.00 0.00 2.57
3118 11368 8.788806 TCTCAAACTTTAATAATTTCTTGGCGA 58.211 29.630 0.00 0.00 0.00 5.54
3123 11373 6.148150 ACTTTAATAATTTCTTGGCGACGTGA 59.852 34.615 0.00 0.00 0.00 4.35
3192 11442 1.640917 ACATGAGGTGAGGGTTACGT 58.359 50.000 0.00 0.00 0.00 3.57
3194 11444 0.902531 ATGAGGTGAGGGTTACGTGG 59.097 55.000 0.00 0.00 0.00 4.94
3260 11510 2.035155 GGCAACACCACCCCCTAC 59.965 66.667 0.00 0.00 38.86 3.18
3292 11542 6.404623 CCTTTCAAATATGCCATTTCTGTCGA 60.405 38.462 0.00 0.00 0.00 4.20
3376 11626 9.243105 TCTACAGATGATTTGTATGGATATCGA 57.757 33.333 0.00 0.00 31.17 3.59
3377 11627 9.295214 CTACAGATGATTTGTATGGATATCGAC 57.705 37.037 0.00 0.00 31.17 4.20
3378 11628 6.808704 ACAGATGATTTGTATGGATATCGACG 59.191 38.462 0.00 0.00 0.00 5.12
3379 11629 7.029563 CAGATGATTTGTATGGATATCGACGA 58.970 38.462 0.00 0.00 0.00 4.20
3380 11630 7.008719 CAGATGATTTGTATGGATATCGACGAC 59.991 40.741 0.00 0.00 0.00 4.34
3381 11631 6.079424 TGATTTGTATGGATATCGACGACA 57.921 37.500 0.00 0.00 0.00 4.35
3382 11632 6.149633 TGATTTGTATGGATATCGACGACAG 58.850 40.000 0.00 0.00 0.00 3.51
3383 11633 5.509716 TTTGTATGGATATCGACGACAGT 57.490 39.130 0.00 0.00 0.00 3.55
3393 11643 3.145212 TCGACGACAGTTGTATGATGG 57.855 47.619 0.00 0.00 33.46 3.51
3453 11726 1.380302 GAACTGGTGGGTGCCTGAT 59.620 57.895 0.00 0.00 0.00 2.90
3612 11885 3.374678 CCGCTAAGGATCTAGATACGTCC 59.625 52.174 6.67 4.33 45.00 4.79
3684 11969 1.484444 AAGAGCAGGGCTTCGAGGTT 61.484 55.000 0.00 0.00 39.88 3.50
3701 11986 3.665173 GGTTACGTCGTGACCTACTAG 57.335 52.381 27.07 0.00 38.85 2.57
3702 11987 3.262420 GGTTACGTCGTGACCTACTAGA 58.738 50.000 27.07 0.00 38.85 2.43
3703 11988 3.062774 GGTTACGTCGTGACCTACTAGAC 59.937 52.174 27.07 3.14 38.85 2.59
3704 11989 2.758736 ACGTCGTGACCTACTAGACT 57.241 50.000 0.00 0.00 0.00 3.24
3705 11990 2.344950 ACGTCGTGACCTACTAGACTG 58.655 52.381 0.00 0.00 0.00 3.51
3706 11991 2.289320 ACGTCGTGACCTACTAGACTGT 60.289 50.000 0.00 0.00 0.00 3.55
3707 11992 2.093941 CGTCGTGACCTACTAGACTGTG 59.906 54.545 0.00 0.00 0.00 3.66
3708 11993 3.332919 GTCGTGACCTACTAGACTGTGA 58.667 50.000 0.00 0.00 0.00 3.58
3709 11994 3.124976 GTCGTGACCTACTAGACTGTGAC 59.875 52.174 0.00 0.00 0.00 3.67
3710 11995 3.072211 CGTGACCTACTAGACTGTGACA 58.928 50.000 0.00 0.00 0.00 3.58
3711 11996 3.120269 CGTGACCTACTAGACTGTGACAC 60.120 52.174 0.00 0.00 0.00 3.67
3712 11997 3.072211 TGACCTACTAGACTGTGACACG 58.928 50.000 0.00 0.00 0.00 4.49
3713 11998 1.811359 ACCTACTAGACTGTGACACGC 59.189 52.381 0.00 0.00 0.00 5.34
3714 11999 1.202043 CCTACTAGACTGTGACACGCG 60.202 57.143 3.53 3.53 0.00 6.01
3715 12000 1.463831 CTACTAGACTGTGACACGCGT 59.536 52.381 5.58 5.58 0.00 6.01
3716 12001 0.666913 ACTAGACTGTGACACGCGTT 59.333 50.000 10.22 0.17 0.00 4.84
3717 12002 1.066605 ACTAGACTGTGACACGCGTTT 59.933 47.619 10.22 1.67 0.00 3.60
3718 12003 1.452025 CTAGACTGTGACACGCGTTTG 59.548 52.381 10.22 0.81 0.00 2.93
3719 12004 1.367665 GACTGTGACACGCGTTTGC 60.368 57.895 10.22 1.75 37.91 3.68
3720 12005 2.052237 CTGTGACACGCGTTTGCC 60.052 61.111 10.22 0.00 38.08 4.52
3721 12006 3.838229 CTGTGACACGCGTTTGCCG 62.838 63.158 10.22 0.00 38.08 5.69
3722 12007 3.932313 GTGACACGCGTTTGCCGT 61.932 61.111 10.22 3.22 39.32 5.68
3728 12013 4.287967 CGCGTTTGCCGTGTCGTT 62.288 61.111 0.00 0.00 42.06 3.85
3729 12014 2.424640 GCGTTTGCCGTGTCGTTC 60.425 61.111 0.00 0.00 39.32 3.95
3730 12015 2.877974 GCGTTTGCCGTGTCGTTCT 61.878 57.895 0.00 0.00 39.32 3.01
3731 12016 1.639534 CGTTTGCCGTGTCGTTCTT 59.360 52.632 0.00 0.00 0.00 2.52
3732 12017 0.027063 CGTTTGCCGTGTCGTTCTTT 59.973 50.000 0.00 0.00 0.00 2.52
3733 12018 1.258458 CGTTTGCCGTGTCGTTCTTTA 59.742 47.619 0.00 0.00 0.00 1.85
3734 12019 2.658224 CGTTTGCCGTGTCGTTCTTTAG 60.658 50.000 0.00 0.00 0.00 1.85
3735 12020 2.228138 TTGCCGTGTCGTTCTTTAGT 57.772 45.000 0.00 0.00 0.00 2.24
3736 12021 1.774639 TGCCGTGTCGTTCTTTAGTC 58.225 50.000 0.00 0.00 0.00 2.59
3737 12022 0.706729 GCCGTGTCGTTCTTTAGTCG 59.293 55.000 0.00 0.00 0.00 4.18
3738 12023 1.927710 GCCGTGTCGTTCTTTAGTCGT 60.928 52.381 0.00 0.00 0.00 4.34
3739 12024 1.712350 CCGTGTCGTTCTTTAGTCGTG 59.288 52.381 0.00 0.00 0.00 4.35
3740 12025 2.602933 CCGTGTCGTTCTTTAGTCGTGA 60.603 50.000 0.00 0.00 0.00 4.35
3741 12026 2.650765 CGTGTCGTTCTTTAGTCGTGAG 59.349 50.000 0.00 0.00 0.00 3.51
3742 12027 3.625938 GTGTCGTTCTTTAGTCGTGAGT 58.374 45.455 0.00 0.00 0.00 3.41
3743 12028 4.040376 GTGTCGTTCTTTAGTCGTGAGTT 58.960 43.478 0.00 0.00 0.00 3.01
3744 12029 5.207768 GTGTCGTTCTTTAGTCGTGAGTTA 58.792 41.667 0.00 0.00 0.00 2.24
3745 12030 5.682862 GTGTCGTTCTTTAGTCGTGAGTTAA 59.317 40.000 0.00 0.00 0.00 2.01
3746 12031 5.911280 TGTCGTTCTTTAGTCGTGAGTTAAG 59.089 40.000 0.00 0.00 0.00 1.85
3747 12032 5.911838 GTCGTTCTTTAGTCGTGAGTTAAGT 59.088 40.000 4.05 0.00 0.00 2.24
3748 12033 6.086110 GTCGTTCTTTAGTCGTGAGTTAAGTC 59.914 42.308 3.15 3.15 0.00 3.01
3749 12034 6.017605 TCGTTCTTTAGTCGTGAGTTAAGTCT 60.018 38.462 11.52 0.00 0.00 3.24
3750 12035 6.302786 CGTTCTTTAGTCGTGAGTTAAGTCTC 59.697 42.308 11.52 7.03 35.28 3.36
3751 12036 5.924786 TCTTTAGTCGTGAGTTAAGTCTCG 58.075 41.667 22.61 22.61 37.28 4.04
3752 12037 2.615489 AGTCGTGAGTTAAGTCTCGC 57.385 50.000 23.41 18.93 40.33 5.03
3753 12038 1.199558 AGTCGTGAGTTAAGTCTCGCC 59.800 52.381 23.41 16.03 40.54 5.54
3754 12039 0.524862 TCGTGAGTTAAGTCTCGCCC 59.475 55.000 23.41 3.29 40.54 6.13
3755 12040 0.526662 CGTGAGTTAAGTCTCGCCCT 59.473 55.000 18.57 0.00 40.54 5.19
3756 12041 1.741706 CGTGAGTTAAGTCTCGCCCTA 59.258 52.381 18.57 0.00 40.54 3.53
3757 12042 2.358267 CGTGAGTTAAGTCTCGCCCTAT 59.642 50.000 18.57 0.00 40.54 2.57
3758 12043 3.181489 CGTGAGTTAAGTCTCGCCCTATT 60.181 47.826 18.57 0.00 40.54 1.73
3759 12044 4.677250 CGTGAGTTAAGTCTCGCCCTATTT 60.677 45.833 18.57 0.00 40.54 1.40
3760 12045 5.449588 CGTGAGTTAAGTCTCGCCCTATTTA 60.450 44.000 18.57 0.00 40.54 1.40
3761 12046 6.514063 GTGAGTTAAGTCTCGCCCTATTTAT 58.486 40.000 11.52 0.00 38.54 1.40
3762 12047 6.985059 GTGAGTTAAGTCTCGCCCTATTTATT 59.015 38.462 11.52 0.00 38.54 1.40
3763 12048 7.494952 GTGAGTTAAGTCTCGCCCTATTTATTT 59.505 37.037 11.52 0.00 38.54 1.40
3764 12049 8.044908 TGAGTTAAGTCTCGCCCTATTTATTTT 58.955 33.333 11.52 0.00 37.28 1.82
3765 12050 8.434733 AGTTAAGTCTCGCCCTATTTATTTTC 57.565 34.615 0.00 0.00 0.00 2.29
3766 12051 8.265764 AGTTAAGTCTCGCCCTATTTATTTTCT 58.734 33.333 0.00 0.00 0.00 2.52
3767 12052 9.538508 GTTAAGTCTCGCCCTATTTATTTTCTA 57.461 33.333 0.00 0.00 0.00 2.10
3768 12053 9.538508 TTAAGTCTCGCCCTATTTATTTTCTAC 57.461 33.333 0.00 0.00 0.00 2.59
3769 12054 6.214399 AGTCTCGCCCTATTTATTTTCTACG 58.786 40.000 0.00 0.00 0.00 3.51
3770 12055 5.981915 GTCTCGCCCTATTTATTTTCTACGT 59.018 40.000 0.00 0.00 0.00 3.57
3771 12056 7.013655 AGTCTCGCCCTATTTATTTTCTACGTA 59.986 37.037 0.00 0.00 0.00 3.57
3772 12057 7.325579 GTCTCGCCCTATTTATTTTCTACGTAG 59.674 40.741 16.73 16.73 0.00 3.51
3774 12059 7.491682 TCGCCCTATTTATTTTCTACGTAGTT 58.508 34.615 21.53 8.52 37.78 2.24
3775 12060 7.981225 TCGCCCTATTTATTTTCTACGTAGTTT 59.019 33.333 21.53 8.20 37.78 2.66
3776 12061 8.606602 CGCCCTATTTATTTTCTACGTAGTTTT 58.393 33.333 21.53 8.51 37.78 2.43
3793 12078 8.239998 ACGTAGTTTTATTACAGTCTACTCACC 58.760 37.037 0.00 0.00 37.78 4.02
3794 12079 8.457261 CGTAGTTTTATTACAGTCTACTCACCT 58.543 37.037 0.00 0.00 0.00 4.00
3799 12084 9.841295 TTTTATTACAGTCTACTCACCTTTTGT 57.159 29.630 0.00 0.00 0.00 2.83
3800 12085 9.485206 TTTATTACAGTCTACTCACCTTTTGTC 57.515 33.333 0.00 0.00 0.00 3.18
3801 12086 4.338379 ACAGTCTACTCACCTTTTGTCC 57.662 45.455 0.00 0.00 0.00 4.02
3802 12087 3.709653 ACAGTCTACTCACCTTTTGTCCA 59.290 43.478 0.00 0.00 0.00 4.02
3803 12088 4.348168 ACAGTCTACTCACCTTTTGTCCAT 59.652 41.667 0.00 0.00 0.00 3.41
3804 12089 5.542635 ACAGTCTACTCACCTTTTGTCCATA 59.457 40.000 0.00 0.00 0.00 2.74
3805 12090 6.042781 ACAGTCTACTCACCTTTTGTCCATAA 59.957 38.462 0.00 0.00 0.00 1.90
3806 12091 7.106239 CAGTCTACTCACCTTTTGTCCATAAT 58.894 38.462 0.00 0.00 0.00 1.28
3807 12092 7.607991 CAGTCTACTCACCTTTTGTCCATAATT 59.392 37.037 0.00 0.00 0.00 1.40
3808 12093 7.607991 AGTCTACTCACCTTTTGTCCATAATTG 59.392 37.037 0.00 0.00 0.00 2.32
3809 12094 7.390718 GTCTACTCACCTTTTGTCCATAATTGT 59.609 37.037 0.00 0.00 0.00 2.71
3810 12095 6.976934 ACTCACCTTTTGTCCATAATTGTT 57.023 33.333 0.00 0.00 0.00 2.83
3811 12096 9.226606 CTACTCACCTTTTGTCCATAATTGTTA 57.773 33.333 0.00 0.00 0.00 2.41
3812 12097 8.110860 ACTCACCTTTTGTCCATAATTGTTAG 57.889 34.615 0.00 0.00 0.00 2.34
3813 12098 7.724061 ACTCACCTTTTGTCCATAATTGTTAGT 59.276 33.333 0.00 0.00 0.00 2.24
3814 12099 8.472007 TCACCTTTTGTCCATAATTGTTAGTT 57.528 30.769 0.00 0.00 0.00 2.24
3815 12100 9.575868 TCACCTTTTGTCCATAATTGTTAGTTA 57.424 29.630 0.00 0.00 0.00 2.24
3865 12150 8.714179 TCATACGTTAAATTGTTAGTTCAGTGG 58.286 33.333 0.00 0.00 0.00 4.00
3866 12151 6.308371 ACGTTAAATTGTTAGTTCAGTGGG 57.692 37.500 0.00 0.00 0.00 4.61
3867 12152 5.824097 ACGTTAAATTGTTAGTTCAGTGGGT 59.176 36.000 0.00 0.00 0.00 4.51
3868 12153 6.140110 CGTTAAATTGTTAGTTCAGTGGGTG 58.860 40.000 0.00 0.00 0.00 4.61
3869 12154 6.017770 CGTTAAATTGTTAGTTCAGTGGGTGA 60.018 38.462 0.00 0.00 0.00 4.02
3870 12155 7.308348 CGTTAAATTGTTAGTTCAGTGGGTGAT 60.308 37.037 0.00 0.00 34.17 3.06
3871 12156 6.976934 AAATTGTTAGTTCAGTGGGTGATT 57.023 33.333 0.00 0.00 34.17 2.57
3872 12157 6.575162 AATTGTTAGTTCAGTGGGTGATTC 57.425 37.500 0.00 0.00 34.17 2.52
3873 12158 3.659786 TGTTAGTTCAGTGGGTGATTCG 58.340 45.455 0.00 0.00 34.17 3.34
3874 12159 3.070446 TGTTAGTTCAGTGGGTGATTCGT 59.930 43.478 0.00 0.00 34.17 3.85
3875 12160 2.169832 AGTTCAGTGGGTGATTCGTG 57.830 50.000 0.00 0.00 34.17 4.35
3876 12161 0.517316 GTTCAGTGGGTGATTCGTGC 59.483 55.000 0.00 0.00 34.17 5.34
3877 12162 0.107643 TTCAGTGGGTGATTCGTGCA 59.892 50.000 0.00 0.00 34.17 4.57
3878 12163 0.324614 TCAGTGGGTGATTCGTGCAT 59.675 50.000 0.00 0.00 0.00 3.96
3879 12164 0.448990 CAGTGGGTGATTCGTGCATG 59.551 55.000 0.00 0.00 0.00 4.06
3880 12165 0.036732 AGTGGGTGATTCGTGCATGT 59.963 50.000 5.68 0.00 0.00 3.21
3881 12166 0.881118 GTGGGTGATTCGTGCATGTT 59.119 50.000 5.68 0.00 0.00 2.71
3882 12167 2.080693 GTGGGTGATTCGTGCATGTTA 58.919 47.619 5.68 0.00 0.00 2.41
3883 12168 2.080693 TGGGTGATTCGTGCATGTTAC 58.919 47.619 5.68 1.49 0.00 2.50
3884 12169 1.400494 GGGTGATTCGTGCATGTTACC 59.600 52.381 5.68 9.83 0.00 2.85
3885 12170 2.080693 GGTGATTCGTGCATGTTACCA 58.919 47.619 5.68 0.00 0.00 3.25
3886 12171 2.159572 GGTGATTCGTGCATGTTACCAC 60.160 50.000 5.68 9.70 0.00 4.16
3887 12172 2.080693 TGATTCGTGCATGTTACCACC 58.919 47.619 5.68 0.00 0.00 4.61
3888 12173 1.062002 GATTCGTGCATGTTACCACCG 59.938 52.381 5.68 0.00 0.00 4.94
3889 12174 0.033642 TTCGTGCATGTTACCACCGA 59.966 50.000 5.68 0.00 0.00 4.69
3890 12175 0.033642 TCGTGCATGTTACCACCGAA 59.966 50.000 5.68 0.00 0.00 4.30
3891 12176 1.083489 CGTGCATGTTACCACCGAAT 58.917 50.000 0.00 0.00 0.00 3.34
3892 12177 1.202020 CGTGCATGTTACCACCGAATG 60.202 52.381 0.00 0.00 0.00 2.67
3903 12188 1.720805 CACCGAATGGAATGTGTCGA 58.279 50.000 0.00 0.00 39.21 4.20
3904 12189 1.393539 CACCGAATGGAATGTGTCGAC 59.606 52.381 9.11 9.11 39.21 4.20
3905 12190 1.006832 CCGAATGGAATGTGTCGACC 58.993 55.000 14.12 5.06 37.49 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.985847 AAAGAGCCAGCGCAACCC 60.986 61.111 11.47 0.00 37.52 4.11
1 2 2.256461 CAAAGAGCCAGCGCAACC 59.744 61.111 11.47 0.00 37.52 3.77
2 3 1.081840 GACAAAGAGCCAGCGCAAC 60.082 57.895 11.47 0.00 37.52 4.17
3 4 1.227943 AGACAAAGAGCCAGCGCAA 60.228 52.632 11.47 0.00 37.52 4.85
6 7 1.621301 CGACAGACAAAGAGCCAGCG 61.621 60.000 0.00 0.00 0.00 5.18
7 8 1.905922 GCGACAGACAAAGAGCCAGC 61.906 60.000 0.00 0.00 0.00 4.85
8 9 1.621301 CGCGACAGACAAAGAGCCAG 61.621 60.000 0.00 0.00 0.00 4.85
9 10 1.664649 CGCGACAGACAAAGAGCCA 60.665 57.895 0.00 0.00 0.00 4.75
10 11 1.618640 GACGCGACAGACAAAGAGCC 61.619 60.000 15.93 0.00 0.00 4.70
12 13 0.039074 AGGACGCGACAGACAAAGAG 60.039 55.000 15.93 0.00 0.00 2.85
13 14 0.387929 AAGGACGCGACAGACAAAGA 59.612 50.000 15.93 0.00 0.00 2.52
14 15 0.784778 GAAGGACGCGACAGACAAAG 59.215 55.000 15.93 0.00 0.00 2.77
15 16 0.103390 TGAAGGACGCGACAGACAAA 59.897 50.000 15.93 0.00 0.00 2.83
16 17 0.317160 ATGAAGGACGCGACAGACAA 59.683 50.000 15.93 0.00 0.00 3.18
17 18 0.317160 AATGAAGGACGCGACAGACA 59.683 50.000 15.93 8.20 0.00 3.41
19 20 0.389817 CCAATGAAGGACGCGACAGA 60.390 55.000 15.93 0.00 0.00 3.41
20 21 1.361668 CCCAATGAAGGACGCGACAG 61.362 60.000 15.93 0.00 0.00 3.51
21 22 1.375396 CCCAATGAAGGACGCGACA 60.375 57.895 15.93 5.11 0.00 4.35
22 23 1.079405 TCCCAATGAAGGACGCGAC 60.079 57.895 15.93 6.56 0.00 5.19
23 24 1.079405 GTCCCAATGAAGGACGCGA 60.079 57.895 15.93 0.00 44.16 5.87
24 25 3.486263 GTCCCAATGAAGGACGCG 58.514 61.111 3.53 3.53 44.16 6.01
28 29 2.267642 CGGCGTCCCAATGAAGGA 59.732 61.111 0.00 0.00 0.00 3.36
29 30 3.508840 GCGGCGTCCCAATGAAGG 61.509 66.667 9.37 0.00 0.00 3.46
31 32 3.636929 ATGGCGGCGTCCCAATGAA 62.637 57.895 9.84 0.00 35.67 2.57
32 33 4.108299 ATGGCGGCGTCCCAATGA 62.108 61.111 9.84 0.00 35.67 2.57
33 34 3.585990 GATGGCGGCGTCCCAATG 61.586 66.667 19.92 0.00 35.67 2.82
39 40 4.899239 CTGGAGGATGGCGGCGTC 62.899 72.222 22.18 22.18 0.00 5.19
44 45 3.694058 AAGCAGCTGGAGGATGGCG 62.694 63.158 17.12 0.00 0.00 5.69
45 46 2.119655 CAAGCAGCTGGAGGATGGC 61.120 63.158 17.12 0.00 0.00 4.40
46 47 2.119655 GCAAGCAGCTGGAGGATGG 61.120 63.158 17.12 0.00 41.15 3.51
48 49 2.274760 GGCAAGCAGCTGGAGGAT 59.725 61.111 17.12 0.00 44.79 3.24
67 68 1.397390 ATTATTGCTGGCTGGCAGGC 61.397 55.000 31.94 31.94 43.39 4.85
68 69 0.387929 CATTATTGCTGGCTGGCAGG 59.612 55.000 29.23 13.52 43.39 4.85
69 70 0.387929 CCATTATTGCTGGCTGGCAG 59.612 55.000 25.23 25.23 43.39 4.85
83 84 2.103094 CAGAAGGAGATGACCGCCATTA 59.897 50.000 0.00 0.00 37.17 1.90
111 115 4.135153 CTCTGGGACGGGCTGACG 62.135 72.222 0.00 0.00 40.31 4.35
121 125 2.665000 CGCCAAAGCTCTCTGGGA 59.335 61.111 10.54 0.00 36.60 4.37
140 144 0.684153 CCCCGCCATGGATTTCTTGT 60.684 55.000 18.40 0.00 42.00 3.16
142 146 1.076044 CCCCCGCCATGGATTTCTT 60.076 57.895 18.40 0.00 42.00 2.52
209 213 3.059884 TGCTATATAAACTGCTGCTCGC 58.940 45.455 0.00 0.00 39.77 5.03
255 259 2.266055 GCTACTCTGGCGCCACTT 59.734 61.111 29.03 15.17 0.00 3.16
281 285 2.161410 CCCACATTATGACACACGGTTG 59.839 50.000 0.00 0.00 0.00 3.77
303 307 2.537792 GATCGTTCGTCCGTCTGCCA 62.538 60.000 0.00 0.00 0.00 4.92
332 336 5.104374 GCAATTGATCCGTGTTCAAATGAT 58.896 37.500 10.34 0.00 36.52 2.45
341 345 0.608856 TGCAGGCAATTGATCCGTGT 60.609 50.000 10.34 0.00 0.00 4.49
343 347 1.315257 GGTGCAGGCAATTGATCCGT 61.315 55.000 10.34 0.00 0.00 4.69
416 420 1.202417 CGGATGCGACTAATCACTGGT 60.202 52.381 0.00 0.00 0.00 4.00
469 473 2.584418 CGGTCAGCATCGCTCCAG 60.584 66.667 0.00 0.00 36.40 3.86
485 489 1.852067 CGTGCTTCCCTCCCAAAACG 61.852 60.000 0.00 0.00 0.00 3.60
496 500 4.980805 TCGCCCACACGTGCTTCC 62.981 66.667 17.22 0.88 0.00 3.46
498 502 4.988598 CCTCGCCCACACGTGCTT 62.989 66.667 17.22 0.00 0.00 3.91
520 524 2.437897 CCCTGCCCACTCAAAGCT 59.562 61.111 0.00 0.00 0.00 3.74
544 548 3.964875 CGCTGCCACGCCTGTTTT 61.965 61.111 0.00 0.00 0.00 2.43
571 575 2.029739 TCATCTAACGTGGTCTTGCGAA 60.030 45.455 0.00 0.00 0.00 4.70
572 576 1.542472 TCATCTAACGTGGTCTTGCGA 59.458 47.619 0.00 0.00 0.00 5.10
587 591 6.054295 GCTGTCTAAATCATGGAAGTCATCT 58.946 40.000 0.00 0.00 32.92 2.90
598 602 5.219343 TCGGATCATGCTGTCTAAATCAT 57.781 39.130 0.00 0.00 0.00 2.45
599 603 4.670896 TCGGATCATGCTGTCTAAATCA 57.329 40.909 0.00 0.00 0.00 2.57
600 604 7.840342 ATATTCGGATCATGCTGTCTAAATC 57.160 36.000 0.00 0.00 0.00 2.17
639 643 0.179000 GGCATCTCCATTCACGACCT 59.821 55.000 0.00 0.00 34.01 3.85
666 670 2.781681 AGTGGGCTAGCGTAATTTGT 57.218 45.000 9.00 0.00 0.00 2.83
997 4122 2.531206 GACTTGTCCGTCAGCTATGTC 58.469 52.381 0.00 0.00 34.11 3.06
1065 4755 0.994247 ATCCATTGGCTCCACAGACA 59.006 50.000 0.00 0.00 34.94 3.41
1238 4934 2.537560 GCATCCGCCAATCCGTGAG 61.538 63.158 0.00 0.00 0.00 3.51
1377 5084 7.295322 TGTGATAACCAATCCAAACAATTCA 57.705 32.000 0.00 0.00 33.22 2.57
1380 5087 9.199645 TGATATGTGATAACCAATCCAAACAAT 57.800 29.630 0.00 0.00 33.22 2.71
1382 5089 7.201688 CGTGATATGTGATAACCAATCCAAACA 60.202 37.037 0.00 0.00 33.22 2.83
1383 5090 7.132213 CGTGATATGTGATAACCAATCCAAAC 58.868 38.462 0.00 0.00 33.22 2.93
1385 5092 6.259829 CACGTGATATGTGATAACCAATCCAA 59.740 38.462 10.90 0.00 37.29 3.53
1388 5095 5.758296 ACCACGTGATATGTGATAACCAATC 59.242 40.000 19.30 0.00 37.29 2.67
1389 5096 5.680619 ACCACGTGATATGTGATAACCAAT 58.319 37.500 19.30 0.00 37.29 3.16
1390 5097 5.092554 ACCACGTGATATGTGATAACCAA 57.907 39.130 19.30 0.00 37.29 3.67
1391 5098 4.746535 ACCACGTGATATGTGATAACCA 57.253 40.909 19.30 0.00 37.29 3.67
1392 5099 6.278363 AGTAACCACGTGATATGTGATAACC 58.722 40.000 19.30 0.00 37.29 2.85
1393 5100 9.472361 AATAGTAACCACGTGATATGTGATAAC 57.528 33.333 19.30 3.82 37.29 1.89
1396 5103 8.857098 ACTAATAGTAACCACGTGATATGTGAT 58.143 33.333 19.30 0.00 37.29 3.06
1397 5104 8.229253 ACTAATAGTAACCACGTGATATGTGA 57.771 34.615 19.30 0.00 37.29 3.58
1408 5115 9.698617 CGCAAAGAAAATACTAATAGTAACCAC 57.301 33.333 4.06 0.00 33.89 4.16
1409 5116 8.885722 CCGCAAAGAAAATACTAATAGTAACCA 58.114 33.333 4.06 0.00 33.89 3.67
1410 5117 8.340443 CCCGCAAAGAAAATACTAATAGTAACC 58.660 37.037 4.06 0.00 33.89 2.85
1411 5118 8.340443 CCCCGCAAAGAAAATACTAATAGTAAC 58.660 37.037 4.06 0.00 33.89 2.50
1412 5119 8.266473 TCCCCGCAAAGAAAATACTAATAGTAA 58.734 33.333 4.06 0.00 33.89 2.24
1413 5120 7.794041 TCCCCGCAAAGAAAATACTAATAGTA 58.206 34.615 2.26 2.26 34.82 1.82
1415 5122 7.562454 TTCCCCGCAAAGAAAATACTAATAG 57.438 36.000 0.00 0.00 0.00 1.73
1416 5123 9.629878 TTATTCCCCGCAAAGAAAATACTAATA 57.370 29.630 0.00 0.00 0.00 0.98
1417 5124 8.528044 TTATTCCCCGCAAAGAAAATACTAAT 57.472 30.769 0.00 0.00 0.00 1.73
1418 5125 7.941431 TTATTCCCCGCAAAGAAAATACTAA 57.059 32.000 0.00 0.00 0.00 2.24
1423 5130 9.143155 AGTAATATTATTCCCCGCAAAGAAAAT 57.857 29.630 0.00 0.00 0.00 1.82
1424 5131 8.528044 AGTAATATTATTCCCCGCAAAGAAAA 57.472 30.769 0.00 0.00 0.00 2.29
1426 5133 9.059260 GTTAGTAATATTATTCCCCGCAAAGAA 57.941 33.333 0.00 0.00 0.00 2.52
1427 5134 8.212312 TGTTAGTAATATTATTCCCCGCAAAGA 58.788 33.333 0.00 0.00 0.00 2.52
1428 5135 8.385898 TGTTAGTAATATTATTCCCCGCAAAG 57.614 34.615 0.00 0.00 0.00 2.77
1430 5137 7.442969 CACTGTTAGTAATATTATTCCCCGCAA 59.557 37.037 0.00 0.00 0.00 4.85
1431 5138 6.932400 CACTGTTAGTAATATTATTCCCCGCA 59.068 38.462 0.00 0.00 0.00 5.69
1527 5273 1.773525 CGACTACGTACGTGATGCATG 59.226 52.381 30.25 12.99 34.56 4.06
1530 5276 1.198608 GCCGACTACGTACGTGATGC 61.199 60.000 30.25 19.79 37.88 3.91
1595 5341 0.391661 ACACATCCATGGTCACGCTC 60.392 55.000 12.58 0.00 0.00 5.03
1640 5386 0.249398 GGACACCAGCCGAACTGTAT 59.751 55.000 4.95 0.00 45.68 2.29
1712 5458 0.178068 ATGATGCGTGTACCTCCCAC 59.822 55.000 0.00 0.00 0.00 4.61
1724 5470 9.237846 CACCATTGTAGTAGTATATATGATGCG 57.762 37.037 0.00 0.00 0.00 4.73
1798 5544 1.534729 GTGGGAAAACCTAGCCAGTG 58.465 55.000 0.00 0.00 41.11 3.66
1812 5558 1.609635 ATCACCGTACATGCGTGGGA 61.610 55.000 11.36 0.00 0.00 4.37
1937 5686 8.334263 TGCATGGAAAAAGAAAAAGAAAACTT 57.666 26.923 0.00 0.00 0.00 2.66
1938 5687 7.823799 TCTGCATGGAAAAAGAAAAAGAAAACT 59.176 29.630 0.00 0.00 0.00 2.66
1944 5693 8.706035 CATTAGTCTGCATGGAAAAAGAAAAAG 58.294 33.333 0.00 0.00 0.00 2.27
2364 8656 1.734388 GCAACCACCACACCTCCAAC 61.734 60.000 0.00 0.00 0.00 3.77
2948 9253 0.813821 GGCAGGAGATTTGAACTGGC 59.186 55.000 0.00 0.00 46.70 4.85
2983 9288 1.143277 ACGGTCGGAGATGAGAGGTAT 59.857 52.381 0.00 0.00 40.67 2.73
2984 9289 0.545171 ACGGTCGGAGATGAGAGGTA 59.455 55.000 0.00 0.00 40.67 3.08
3008 9313 4.806247 GGAAGTGATAATTGTGGAGAGTCG 59.194 45.833 0.00 0.00 0.00 4.18
3009 9314 5.983540 AGGAAGTGATAATTGTGGAGAGTC 58.016 41.667 0.00 0.00 0.00 3.36
3010 9315 6.897966 TCTAGGAAGTGATAATTGTGGAGAGT 59.102 38.462 0.00 0.00 0.00 3.24
3011 9316 7.353414 TCTAGGAAGTGATAATTGTGGAGAG 57.647 40.000 0.00 0.00 0.00 3.20
3012 9317 7.921041 ATCTAGGAAGTGATAATTGTGGAGA 57.079 36.000 0.00 0.00 0.00 3.71
3015 9320 9.442047 GGAATATCTAGGAAGTGATAATTGTGG 57.558 37.037 0.00 0.00 0.00 4.17
3022 9327 7.723382 AGGATGGGAATATCTAGGAAGTGATA 58.277 38.462 0.00 0.00 0.00 2.15
3027 9332 7.843760 AGTGATAGGATGGGAATATCTAGGAAG 59.156 40.741 0.00 0.00 0.00 3.46
3053 9358 1.722034 ACCCAGAGAAGACAAGCAGA 58.278 50.000 0.00 0.00 0.00 4.26
3054 9359 2.224378 TGAACCCAGAGAAGACAAGCAG 60.224 50.000 0.00 0.00 0.00 4.24
3192 11442 1.330213 CAATGTATCGCGTCATTGCCA 59.670 47.619 26.33 10.77 42.37 4.92
3194 11444 1.921573 GCCAATGTATCGCGTCATTGC 60.922 52.381 29.16 23.96 45.21 3.56
3260 11510 2.440501 GCATATTTGAAAGGACGTGCG 58.559 47.619 0.00 0.00 0.00 5.34
3292 11542 5.987098 TCTAGAGCAGAATGAGAAAGCAAT 58.013 37.500 0.00 0.00 39.69 3.56
3350 11600 9.243105 TCGATATCCATACAAATCATCTGTAGA 57.757 33.333 0.00 0.00 32.96 2.59
3353 11603 6.808704 CGTCGATATCCATACAAATCATCTGT 59.191 38.462 0.00 0.00 0.00 3.41
3357 11607 6.687604 TGTCGTCGATATCCATACAAATCAT 58.312 36.000 0.00 0.00 0.00 2.45
3358 11608 6.079424 TGTCGTCGATATCCATACAAATCA 57.921 37.500 0.00 0.00 0.00 2.57
3359 11609 6.150318 ACTGTCGTCGATATCCATACAAATC 58.850 40.000 0.00 0.00 0.00 2.17
3360 11610 6.085555 ACTGTCGTCGATATCCATACAAAT 57.914 37.500 0.00 0.00 0.00 2.32
3361 11611 5.509716 ACTGTCGTCGATATCCATACAAA 57.490 39.130 0.00 0.00 0.00 2.83
3362 11612 5.163591 ACAACTGTCGTCGATATCCATACAA 60.164 40.000 0.00 0.00 0.00 2.41
3363 11613 4.337274 ACAACTGTCGTCGATATCCATACA 59.663 41.667 0.00 0.00 0.00 2.29
3364 11614 4.856664 ACAACTGTCGTCGATATCCATAC 58.143 43.478 0.00 0.00 0.00 2.39
3365 11615 6.428771 TCATACAACTGTCGTCGATATCCATA 59.571 38.462 0.00 0.00 0.00 2.74
3366 11616 5.240844 TCATACAACTGTCGTCGATATCCAT 59.759 40.000 0.00 0.00 0.00 3.41
3367 11617 4.577283 TCATACAACTGTCGTCGATATCCA 59.423 41.667 0.00 0.00 0.00 3.41
3368 11618 5.104562 TCATACAACTGTCGTCGATATCC 57.895 43.478 0.00 0.00 0.00 2.59
3369 11619 5.569441 CCATCATACAACTGTCGTCGATATC 59.431 44.000 0.00 0.00 0.00 1.63
3370 11620 5.009710 ACCATCATACAACTGTCGTCGATAT 59.990 40.000 0.00 0.00 0.00 1.63
3371 11621 4.337274 ACCATCATACAACTGTCGTCGATA 59.663 41.667 0.00 0.00 0.00 2.92
3372 11622 3.130516 ACCATCATACAACTGTCGTCGAT 59.869 43.478 0.00 0.00 0.00 3.59
3373 11623 2.490509 ACCATCATACAACTGTCGTCGA 59.509 45.455 0.00 0.00 0.00 4.20
3374 11624 2.852413 GACCATCATACAACTGTCGTCG 59.148 50.000 0.00 0.00 0.00 5.12
3375 11625 3.845178 TGACCATCATACAACTGTCGTC 58.155 45.455 0.00 0.00 0.00 4.20
3376 11626 3.258372 ACTGACCATCATACAACTGTCGT 59.742 43.478 0.00 0.00 0.00 4.34
3377 11627 3.849911 ACTGACCATCATACAACTGTCG 58.150 45.455 0.00 0.00 0.00 4.35
3378 11628 5.577164 GTGTACTGACCATCATACAACTGTC 59.423 44.000 0.00 0.00 29.25 3.51
3379 11629 5.246203 AGTGTACTGACCATCATACAACTGT 59.754 40.000 0.00 0.00 29.25 3.55
3380 11630 5.724328 AGTGTACTGACCATCATACAACTG 58.276 41.667 0.00 0.00 29.25 3.16
3381 11631 5.105310 GGAGTGTACTGACCATCATACAACT 60.105 44.000 0.00 0.00 29.25 3.16
3382 11632 5.109903 GGAGTGTACTGACCATCATACAAC 58.890 45.833 0.00 0.00 29.25 3.32
3383 11633 4.775253 TGGAGTGTACTGACCATCATACAA 59.225 41.667 0.00 0.00 29.25 2.41
3393 11643 1.546476 CTGACCCTGGAGTGTACTGAC 59.454 57.143 0.00 0.00 0.00 3.51
3671 11956 1.888736 GACGTAACCTCGAAGCCCT 59.111 57.895 0.00 0.00 34.70 5.19
3684 11969 3.056536 ACAGTCTAGTAGGTCACGACGTA 60.057 47.826 0.00 0.00 0.00 3.57
3698 11983 1.452025 CAAACGCGTGTCACAGTCTAG 59.548 52.381 14.98 0.00 0.00 2.43
3699 11984 1.483316 CAAACGCGTGTCACAGTCTA 58.517 50.000 14.98 0.00 0.00 2.59
3700 11985 1.762222 GCAAACGCGTGTCACAGTCT 61.762 55.000 14.98 0.00 0.00 3.24
3701 11986 1.367665 GCAAACGCGTGTCACAGTC 60.368 57.895 14.98 0.00 0.00 3.51
3702 11987 2.707039 GCAAACGCGTGTCACAGT 59.293 55.556 14.98 0.00 0.00 3.55
3703 11988 2.052237 GGCAAACGCGTGTCACAG 60.052 61.111 14.98 0.00 0.00 3.66
3704 11989 3.931130 CGGCAAACGCGTGTCACA 61.931 61.111 14.98 0.00 34.82 3.58
3714 11999 2.286025 ACTAAAGAACGACACGGCAAAC 59.714 45.455 0.00 0.00 0.00 2.93
3715 12000 2.540931 GACTAAAGAACGACACGGCAAA 59.459 45.455 0.00 0.00 0.00 3.68
3716 12001 2.129607 GACTAAAGAACGACACGGCAA 58.870 47.619 0.00 0.00 0.00 4.52
3717 12002 1.774639 GACTAAAGAACGACACGGCA 58.225 50.000 0.00 0.00 0.00 5.69
3718 12003 0.706729 CGACTAAAGAACGACACGGC 59.293 55.000 0.00 0.00 0.00 5.68
3719 12004 1.712350 CACGACTAAAGAACGACACGG 59.288 52.381 0.00 0.00 0.00 4.94
3720 12005 2.642995 TCACGACTAAAGAACGACACG 58.357 47.619 0.00 0.00 0.00 4.49
3721 12006 3.625938 ACTCACGACTAAAGAACGACAC 58.374 45.455 0.00 0.00 0.00 3.67
3722 12007 3.976793 ACTCACGACTAAAGAACGACA 57.023 42.857 0.00 0.00 0.00 4.35
3723 12008 5.911838 ACTTAACTCACGACTAAAGAACGAC 59.088 40.000 0.00 0.00 0.00 4.34
3724 12009 6.017605 AGACTTAACTCACGACTAAAGAACGA 60.018 38.462 0.00 0.00 0.00 3.85
3725 12010 6.141462 AGACTTAACTCACGACTAAAGAACG 58.859 40.000 0.00 0.00 0.00 3.95
3726 12011 6.302786 CGAGACTTAACTCACGACTAAAGAAC 59.697 42.308 0.00 0.00 36.80 3.01
3727 12012 6.369005 CGAGACTTAACTCACGACTAAAGAA 58.631 40.000 0.00 0.00 36.80 2.52
3728 12013 5.616424 GCGAGACTTAACTCACGACTAAAGA 60.616 44.000 6.23 0.00 36.80 2.52
3729 12014 4.554200 GCGAGACTTAACTCACGACTAAAG 59.446 45.833 6.23 0.00 36.80 1.85
3730 12015 4.470462 GCGAGACTTAACTCACGACTAAA 58.530 43.478 6.23 0.00 36.80 1.85
3731 12016 3.120060 GGCGAGACTTAACTCACGACTAA 60.120 47.826 6.23 0.00 36.80 2.24
3732 12017 2.417933 GGCGAGACTTAACTCACGACTA 59.582 50.000 6.23 0.00 36.80 2.59
3733 12018 1.199558 GGCGAGACTTAACTCACGACT 59.800 52.381 6.23 0.00 36.80 4.18
3734 12019 1.615502 GGCGAGACTTAACTCACGAC 58.384 55.000 6.23 0.17 36.80 4.34
3735 12020 0.524862 GGGCGAGACTTAACTCACGA 59.475 55.000 6.23 0.00 36.80 4.35
3736 12021 0.526662 AGGGCGAGACTTAACTCACG 59.473 55.000 0.00 0.00 36.80 4.35
3737 12022 4.388378 AATAGGGCGAGACTTAACTCAC 57.612 45.455 0.00 0.00 36.80 3.51
3738 12023 6.726490 ATAAATAGGGCGAGACTTAACTCA 57.274 37.500 0.00 0.00 36.80 3.41
3739 12024 8.434733 AAAATAAATAGGGCGAGACTTAACTC 57.565 34.615 0.00 0.00 0.00 3.01
3740 12025 8.265764 AGAAAATAAATAGGGCGAGACTTAACT 58.734 33.333 0.00 0.00 0.00 2.24
3741 12026 8.434733 AGAAAATAAATAGGGCGAGACTTAAC 57.565 34.615 0.00 0.00 0.00 2.01
3742 12027 9.538508 GTAGAAAATAAATAGGGCGAGACTTAA 57.461 33.333 0.00 0.00 0.00 1.85
3743 12028 7.864379 CGTAGAAAATAAATAGGGCGAGACTTA 59.136 37.037 0.00 0.00 0.00 2.24
3744 12029 6.700520 CGTAGAAAATAAATAGGGCGAGACTT 59.299 38.462 0.00 0.00 0.00 3.01
3745 12030 6.183360 ACGTAGAAAATAAATAGGGCGAGACT 60.183 38.462 0.00 0.00 0.00 3.24
3746 12031 5.981915 ACGTAGAAAATAAATAGGGCGAGAC 59.018 40.000 0.00 0.00 0.00 3.36
3747 12032 6.152932 ACGTAGAAAATAAATAGGGCGAGA 57.847 37.500 0.00 0.00 0.00 4.04
3748 12033 7.144000 ACTACGTAGAAAATAAATAGGGCGAG 58.856 38.462 28.74 0.00 0.00 5.03
3749 12034 7.042797 ACTACGTAGAAAATAAATAGGGCGA 57.957 36.000 28.74 0.00 0.00 5.54
3750 12035 7.704789 AACTACGTAGAAAATAAATAGGGCG 57.295 36.000 28.74 0.00 0.00 6.13
3767 12052 8.239998 GGTGAGTAGACTGTAATAAAACTACGT 58.760 37.037 0.00 0.00 36.41 3.57
3768 12053 8.457261 AGGTGAGTAGACTGTAATAAAACTACG 58.543 37.037 0.00 0.00 36.41 3.51
3773 12058 9.841295 ACAAAAGGTGAGTAGACTGTAATAAAA 57.159 29.630 0.00 0.00 0.00 1.52
3774 12059 9.485206 GACAAAAGGTGAGTAGACTGTAATAAA 57.515 33.333 0.00 0.00 0.00 1.40
3775 12060 8.092687 GGACAAAAGGTGAGTAGACTGTAATAA 58.907 37.037 0.00 0.00 0.00 1.40
3776 12061 7.233962 TGGACAAAAGGTGAGTAGACTGTAATA 59.766 37.037 0.00 0.00 0.00 0.98
3777 12062 6.042781 TGGACAAAAGGTGAGTAGACTGTAAT 59.957 38.462 0.00 0.00 0.00 1.89
3778 12063 5.364446 TGGACAAAAGGTGAGTAGACTGTAA 59.636 40.000 0.00 0.00 0.00 2.41
3779 12064 4.897076 TGGACAAAAGGTGAGTAGACTGTA 59.103 41.667 0.00 0.00 0.00 2.74
3780 12065 3.709653 TGGACAAAAGGTGAGTAGACTGT 59.290 43.478 0.00 0.00 0.00 3.55
3781 12066 4.336889 TGGACAAAAGGTGAGTAGACTG 57.663 45.455 0.00 0.00 0.00 3.51
3782 12067 6.681729 TTATGGACAAAAGGTGAGTAGACT 57.318 37.500 0.00 0.00 0.00 3.24
3783 12068 7.390718 ACAATTATGGACAAAAGGTGAGTAGAC 59.609 37.037 0.00 0.00 0.00 2.59
3784 12069 7.458397 ACAATTATGGACAAAAGGTGAGTAGA 58.542 34.615 0.00 0.00 0.00 2.59
3785 12070 7.687941 ACAATTATGGACAAAAGGTGAGTAG 57.312 36.000 0.00 0.00 0.00 2.57
3786 12071 9.226606 CTAACAATTATGGACAAAAGGTGAGTA 57.773 33.333 0.00 0.00 0.00 2.59
3787 12072 6.976934 AACAATTATGGACAAAAGGTGAGT 57.023 33.333 0.00 0.00 0.00 3.41
3788 12073 8.110860 ACTAACAATTATGGACAAAAGGTGAG 57.889 34.615 0.00 0.00 0.00 3.51
3789 12074 8.472007 AACTAACAATTATGGACAAAAGGTGA 57.528 30.769 0.00 0.00 0.00 4.02
3839 12124 8.714179 CCACTGAACTAACAATTTAACGTATGA 58.286 33.333 0.00 0.00 0.00 2.15
3840 12125 7.960738 CCCACTGAACTAACAATTTAACGTATG 59.039 37.037 0.00 0.00 0.00 2.39
3841 12126 7.662669 ACCCACTGAACTAACAATTTAACGTAT 59.337 33.333 0.00 0.00 0.00 3.06
3842 12127 6.991531 ACCCACTGAACTAACAATTTAACGTA 59.008 34.615 0.00 0.00 0.00 3.57
3843 12128 5.824097 ACCCACTGAACTAACAATTTAACGT 59.176 36.000 0.00 0.00 0.00 3.99
3844 12129 6.017770 TCACCCACTGAACTAACAATTTAACG 60.018 38.462 0.00 0.00 0.00 3.18
3845 12130 7.266922 TCACCCACTGAACTAACAATTTAAC 57.733 36.000 0.00 0.00 0.00 2.01
3846 12131 8.472007 AATCACCCACTGAACTAACAATTTAA 57.528 30.769 0.00 0.00 30.60 1.52
3847 12132 7.094975 CGAATCACCCACTGAACTAACAATTTA 60.095 37.037 0.00 0.00 30.60 1.40
3848 12133 6.293955 CGAATCACCCACTGAACTAACAATTT 60.294 38.462 0.00 0.00 30.60 1.82
3849 12134 5.181245 CGAATCACCCACTGAACTAACAATT 59.819 40.000 0.00 0.00 30.60 2.32
3850 12135 4.695455 CGAATCACCCACTGAACTAACAAT 59.305 41.667 0.00 0.00 30.60 2.71
3851 12136 4.062293 CGAATCACCCACTGAACTAACAA 58.938 43.478 0.00 0.00 30.60 2.83
3852 12137 3.070446 ACGAATCACCCACTGAACTAACA 59.930 43.478 0.00 0.00 30.60 2.41
3853 12138 3.432252 CACGAATCACCCACTGAACTAAC 59.568 47.826 0.00 0.00 30.60 2.34
3854 12139 3.659786 CACGAATCACCCACTGAACTAA 58.340 45.455 0.00 0.00 30.60 2.24
3855 12140 2.611971 GCACGAATCACCCACTGAACTA 60.612 50.000 0.00 0.00 30.60 2.24
3856 12141 1.878102 GCACGAATCACCCACTGAACT 60.878 52.381 0.00 0.00 30.60 3.01
3857 12142 0.517316 GCACGAATCACCCACTGAAC 59.483 55.000 0.00 0.00 30.60 3.18
3858 12143 0.107643 TGCACGAATCACCCACTGAA 59.892 50.000 0.00 0.00 30.60 3.02
3859 12144 0.324614 ATGCACGAATCACCCACTGA 59.675 50.000 0.00 0.00 0.00 3.41
3860 12145 0.448990 CATGCACGAATCACCCACTG 59.551 55.000 0.00 0.00 0.00 3.66
3861 12146 0.036732 ACATGCACGAATCACCCACT 59.963 50.000 0.00 0.00 0.00 4.00
3862 12147 0.881118 AACATGCACGAATCACCCAC 59.119 50.000 0.00 0.00 0.00 4.61
3863 12148 2.080693 GTAACATGCACGAATCACCCA 58.919 47.619 0.00 0.00 0.00 4.51
3864 12149 1.400494 GGTAACATGCACGAATCACCC 59.600 52.381 0.00 0.00 0.00 4.61
3865 12150 2.080693 TGGTAACATGCACGAATCACC 58.919 47.619 0.00 0.00 46.17 4.02
3884 12169 1.393539 GTCGACACATTCCATTCGGTG 59.606 52.381 11.55 0.00 37.29 4.94
3885 12170 1.674817 GGTCGACACATTCCATTCGGT 60.675 52.381 18.91 0.00 32.28 4.69
3886 12171 1.006832 GGTCGACACATTCCATTCGG 58.993 55.000 18.91 0.00 32.28 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.