AutoCloner

Multiple sequence alignment - TraesCS2A01G555900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G555900	chr2A	100.000	3672	0	0	1	3672	760117983	760121654	0.000000e+00	6782.0
1	TraesCS2A01G555900	chr2A	82.434	1019	154	16	900	1907	25475193	25474189	0.000000e+00	867.0
2	TraesCS2A01G555900	chr2A	80.159	252	35	10	1660	1907	25586781	25586541	1.360000e-39	174.0
3	TraesCS2A01G555900	chr2D	94.047	2083	60	16	714	2754	631239559	631237499	0.000000e+00	3101.0
4	TraesCS2A01G555900	chr2D	91.596	940	39	15	2752	3672	631237386	631236468	0.000000e+00	1262.0
5	TraesCS2A01G555900	chr2D	97.423	388	8	2	4	390	631804512	631804898	0.000000e+00	660.0
6	TraesCS2A01G555900	chr2D	95.116	389	16	3	4	390	631481186	631480799	8.720000e-171	610.0
7	TraesCS2A01G555900	chr2D	93.689	412	13	4	1	408	631240732	631240330	4.060000e-169	604.0
8	TraesCS2A01G555900	chr2D	96.154	312	8	2	414	721	631240291	631239980	1.180000e-139	507.0
9	TraesCS2A01G555900	chr2D	90.000	130	10	2	72	198	593803712	593803841	8.160000e-37	165.0
10	TraesCS2A01G555900	chr2D	95.960	99	4	0	744	842	631479966	631479868	1.060000e-35	161.0
11	TraesCS2A01G555900	chr2D	93.939	99	6	0	744	842	631805753	631805851	2.280000e-32	150.0
12	TraesCS2A01G555900	chr2D	75.728	206	33	11	3169	3357	435228698	435228493	1.820000e-13	87.9
13	TraesCS2A01G555900	chr2B	92.254	2156	67	26	712	2821	744388400	744390501	0.000000e+00	2964.0
14	TraesCS2A01G555900	chr2B	94.588	1626	61	9	2063	3672	774694110	774692496	0.000000e+00	2490.0
15	TraesCS2A01G555900	chr2B	95.567	812	30	2	2861	3672	744390505	744391310	0.000000e+00	1295.0
16	TraesCS2A01G555900	chr2B	89.338	1088	22	27	714	1749	774716159	774715114	0.000000e+00	1280.0
17	TraesCS2A01G555900	chr2B	95.116	389	16	3	4	390	774945494	774945107	8.720000e-171	610.0
18	TraesCS2A01G555900	chr2B	91.932	409	18	9	4	408	744387312	744387709	3.200000e-155	558.0
19	TraesCS2A01G555900	chr2B	96.405	306	10	1	414	718	744387747	744388052	1.520000e-138	503.0
20	TraesCS2A01G555900	chr2B	90.501	379	20	8	18	390	774717284	774716916	1.530000e-133	486.0
21	TraesCS2A01G555900	chr2B	93.431	274	8	6	1799	2069	774715107	774714841	7.390000e-107	398.0
22	TraesCS2A01G555900	chr2B	92.126	127	10	0	72	198	720807254	720807380	2.910000e-41	180.0
23	TraesCS2A01G555900	chr2B	95.960	99	4	0	744	842	774944273	774944175	1.060000e-35	161.0
24	TraesCS2A01G555900	chr2B	78.543	247	32	6	3034	3260	228004656	228004901	3.820000e-30	143.0
25	TraesCS2A01G555900	chr2B	77.559	254	35	9	3034	3266	169603673	169603925	2.300000e-27	134.0
26	TraesCS2A01G555900	chr5D	89.245	1060	80	9	882	1919	518872774	518873821	0.000000e+00	1295.0
27	TraesCS2A01G555900	chr5D	81.705	880	118	14	1980	2841	518873934	518874788	0.000000e+00	693.0
28	TraesCS2A01G555900	chr5D	88.660	97	8	3	746	841	518872605	518872699	8.330000e-22	115.0
29	TraesCS2A01G555900	chr5B	88.553	1057	94	9	882	1919	652520531	652521579	0.000000e+00	1256.0
30	TraesCS2A01G555900	chr5B	79.092	947	133	24	1980	2895	652521684	652522596	3.160000e-165	592.0
31	TraesCS2A01G555900	chr5B	86.184	304	35	2	3366	3669	652522728	652523024	4.570000e-84	322.0
32	TraesCS2A01G555900	chr5B	87.313	134	14	3	3033	3164	396640286	396640418	2.280000e-32	150.0
33	TraesCS2A01G555900	chr5B	78.629	248	32	7	3033	3260	398721238	398721484	1.060000e-30	145.0
34	TraesCS2A01G555900	chr5B	78.857	175	31	6	553	725	652519425	652519595	3.000000e-21	113.0
35	TraesCS2A01G555900	chr5B	89.831	59	5	1	744	801	652520245	652520303	1.410000e-09	75.0
36	TraesCS2A01G555900	chr5A	79.755	1062	141	27	1816	2841	645423316	645424339	0.000000e+00	702.0
37	TraesCS2A01G555900	chr5A	91.525	118	10	0	1650	1767	645423190	645423307	2.930000e-36	163.0
38	TraesCS2A01G555900	chr3D	79.587	774	131	15	1017	1766	560827016	560827786	2.510000e-146	529.0
39	TraesCS2A01G555900	chr3D	79.108	785	139	15	1007	1768	560640241	560641023	5.440000e-143	518.0
40	TraesCS2A01G555900	chr3D	78.799	783	133	23	1007	1762	560269466	560268690	2.550000e-136	496.0
41	TraesCS2A01G555900	chr3D	75.728	206	33	12	3169	3357	545270089	545270294	1.820000e-13	87.9
42	TraesCS2A01G555900	chr3B	78.416	783	136	25	1007	1762	744512785	744512009	2.570000e-131	479.0
43	TraesCS2A01G555900	chr3B	78.274	336	38	25	3057	3357	817039855	817040190	2.250000e-42	183.0
44	TraesCS2A01G555900	chr3B	75.627	279	55	11	1496	1767	746357134	746356862	3.850000e-25	126.0
45	TraesCS2A01G555900	chr1B	78.967	271	35	14	3017	3266	531186073	531186342	8.160000e-37	165.0
46	TraesCS2A01G555900	chr4A	76.036	338	38	26	3063	3357	284637783	284637446	6.400000e-28	135.0
47	TraesCS2A01G555900	chr7A	75.444	338	40	26	3063	3357	276918408	276918071	1.380000e-24	124.0
48	TraesCS2A01G555900	chr3A	78.771	179	25	7	2385	2551	629015614	629015437	1.390000e-19	108.0
49	TraesCS2A01G555900	chr3A	78.771	179	25	7	2385	2551	696244862	696244685	1.390000e-19	108.0
50	TraesCS2A01G555900	chrUn	100.000	29	0	0	3095	3123	62161245	62161217	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G555900	chr2A	760117983	760121654	3671	False	6782.000000	6782	100.000000	1	3672	1	chr2A.!!$F1	3671
1	TraesCS2A01G555900	chr2A	25474189	25475193	1004	True	867.000000	867	82.434000	900	1907	1	chr2A.!!$R1	1007
2	TraesCS2A01G555900	chr2D	631236468	631240732	4264	True	1368.500000	3101	93.871500	1	3672	4	chr2D.!!$R2	3671
3	TraesCS2A01G555900	chr2D	631804512	631805851	1339	False	405.000000	660	95.681000	4	842	2	chr2D.!!$F2	838
4	TraesCS2A01G555900	chr2D	631479868	631481186	1318	True	385.500000	610	95.538000	4	842	2	chr2D.!!$R3	838
5	TraesCS2A01G555900	chr2B	774692496	774694110	1614	True	2490.000000	2490	94.588000	2063	3672	1	chr2B.!!$R1	1609
6	TraesCS2A01G555900	chr2B	744387312	744391310	3998	False	1330.000000	2964	94.039500	4	3672	4	chr2B.!!$F4	3668
7	TraesCS2A01G555900	chr2B	774714841	774717284	2443	True	721.333333	1280	91.090000	18	2069	3	chr2B.!!$R2	2051
8	TraesCS2A01G555900	chr2B	774944175	774945494	1319	True	385.500000	610	95.538000	4	842	2	chr2B.!!$R3	838
9	TraesCS2A01G555900	chr5D	518872605	518874788	2183	False	701.000000	1295	86.536667	746	2841	3	chr5D.!!$F1	2095
10	TraesCS2A01G555900	chr5B	652519425	652523024	3599	False	471.600000	1256	84.503400	553	3669	5	chr5B.!!$F3	3116
11	TraesCS2A01G555900	chr5A	645423190	645424339	1149	False	432.500000	702	85.640000	1650	2841	2	chr5A.!!$F1	1191
12	TraesCS2A01G555900	chr3D	560827016	560827786	770	False	529.000000	529	79.587000	1017	1766	1	chr3D.!!$F3	749
13	TraesCS2A01G555900	chr3D	560640241	560641023	782	False	518.000000	518	79.108000	1007	1768	1	chr3D.!!$F2	761
14	TraesCS2A01G555900	chr3D	560268690	560269466	776	True	496.000000	496	78.799000	1007	1762	1	chr3D.!!$R1	755
15	TraesCS2A01G555900	chr3B	744512009	744512785	776	True	479.000000	479	78.416000	1007	1762	1	chr3B.!!$R1	755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
459	539	2.423373	GCCCTCCCATTTGCATCTTCTA	60.423	50.000	0.00	0.0	0.0	2.1	F
1128	2303	1.455773	TCCGCGACATCATCTCCCT	60.456	57.895	8.23	0.0	0.0	4.2	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1814	3072	0.592247	GCGCATGGCCAATCTTAACG	60.592	55.000	10.96	7.27	34.8	3.18	R
2862	4350	1.812571	GACAGCCAACATTCCAACGAT	59.187	47.619	0.00	0.00	0.0	3.73	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
410	420	7.825761	GCTGTACCTAACTTAAAATCTAACCCA	59.174	37.037	0.00	0.00	0.00	4.51
438	518	6.027131	TGAATATTTGCTGATTTTTCGGACG	58.973	36.000	0.00	0.00	0.00	4.79
459	539	2.423373	GCCCTCCCATTTGCATCTTCTA	60.423	50.000	0.00	0.00	0.00	2.10
460	540	3.902218	CCCTCCCATTTGCATCTTCTAA	58.098	45.455	0.00	0.00	0.00	2.10
461	541	3.633986	CCCTCCCATTTGCATCTTCTAAC	59.366	47.826	0.00	0.00	0.00	2.34
462	542	4.272489	CCTCCCATTTGCATCTTCTAACA	58.728	43.478	0.00	0.00	0.00	2.41
463	543	4.337555	CCTCCCATTTGCATCTTCTAACAG	59.662	45.833	0.00	0.00	0.00	3.16
464	544	4.922206	TCCCATTTGCATCTTCTAACAGT	58.078	39.130	0.00	0.00	0.00	3.55
465	545	5.324409	TCCCATTTGCATCTTCTAACAGTT	58.676	37.500	0.00	0.00	0.00	3.16
466	546	5.774690	TCCCATTTGCATCTTCTAACAGTTT	59.225	36.000	0.00	0.00	0.00	2.66
467	547	6.945435	TCCCATTTGCATCTTCTAACAGTTTA	59.055	34.615	0.00	0.00	0.00	2.01
468	548	7.615365	TCCCATTTGCATCTTCTAACAGTTTAT	59.385	33.333	0.00	0.00	0.00	1.40
469	549	8.253113	CCCATTTGCATCTTCTAACAGTTTATT	58.747	33.333	0.00	0.00	0.00	1.40
473	553	8.506168	TTGCATCTTCTAACAGTTTATTAGGG	57.494	34.615	0.00	0.00	31.65	3.53
474	554	7.054124	TGCATCTTCTAACAGTTTATTAGGGG	58.946	38.462	0.00	0.00	31.65	4.79
475	555	7.054751	GCATCTTCTAACAGTTTATTAGGGGT	58.945	38.462	0.00	0.00	31.65	4.95
476	556	7.226918	GCATCTTCTAACAGTTTATTAGGGGTC	59.773	40.741	0.00	0.00	31.65	4.46
477	557	7.801893	TCTTCTAACAGTTTATTAGGGGTCA	57.198	36.000	0.00	0.00	31.65	4.02
478	558	8.388656	TCTTCTAACAGTTTATTAGGGGTCAT	57.611	34.615	0.00	0.00	31.65	3.06
479	559	8.832735	TCTTCTAACAGTTTATTAGGGGTCATT	58.167	33.333	0.00	0.00	31.65	2.57
480	560	9.110502	CTTCTAACAGTTTATTAGGGGTCATTC	57.889	37.037	0.00	0.00	31.65	2.67
481	561	8.153221	TCTAACAGTTTATTAGGGGTCATTCA	57.847	34.615	0.00	0.00	31.65	2.57
482	562	8.265055	TCTAACAGTTTATTAGGGGTCATTCAG	58.735	37.037	0.00	0.00	31.65	3.02
483	563	6.388619	ACAGTTTATTAGGGGTCATTCAGT	57.611	37.500	0.00	0.00	0.00	3.41
484	564	6.415573	ACAGTTTATTAGGGGTCATTCAGTC	58.584	40.000	0.00	0.00	0.00	3.51
555	712	9.962759	GCTGATCATTTCAATTGTAAATTTGTC	57.037	29.630	5.13	8.17	32.78	3.18
659	828	5.126067	TCTAGAGGCCTTGTATGAAAATGC	58.874	41.667	6.77	0.00	0.00	3.56
1128	2303	1.455773	TCCGCGACATCATCTCCCT	60.456	57.895	8.23	0.00	0.00	4.20
1255	2484	2.750637	GTCGGCGAGGAGGACTCA	60.751	66.667	11.20	0.00	46.98	3.41
1256	2485	2.122167	GTCGGCGAGGAGGACTCAT	61.122	63.158	11.20	0.00	46.98	2.90
1612	2846	2.817396	GCCTTCCTGCTCGACAGC	60.817	66.667	8.85	0.02	45.78	4.40
1910	3168	2.604046	ACACCGCTATCAAGGTCATC	57.396	50.000	0.00	0.00	39.00	2.92
1919	3177	5.698089	CGCTATCAAGGTCATCACATTGTAT	59.302	40.000	0.00	0.00	43.44	2.29
1921	3179	7.148738	CGCTATCAAGGTCATCACATTGTATAC	60.149	40.741	0.00	0.00	43.44	1.47
1922	3180	7.657354	GCTATCAAGGTCATCACATTGTATACA	59.343	37.037	0.08	0.08	43.44	2.29
1923	3181	7.792374	ATCAAGGTCATCACATTGTATACAC	57.208	36.000	4.68	0.00	43.44	2.90
1924	3182	6.946340	TCAAGGTCATCACATTGTATACACT	58.054	36.000	4.68	0.00	43.44	3.55
1925	3183	7.394016	TCAAGGTCATCACATTGTATACACTT	58.606	34.615	4.68	0.00	43.44	3.16
1926	3184	7.334171	TCAAGGTCATCACATTGTATACACTTG	59.666	37.037	4.68	11.25	43.44	3.16
1927	3185	6.115446	AGGTCATCACATTGTATACACTTGG	58.885	40.000	4.68	0.00	0.00	3.61
1928	3186	6.070251	AGGTCATCACATTGTATACACTTGGA	60.070	38.462	4.68	6.80	0.00	3.53
1929	3187	6.258727	GGTCATCACATTGTATACACTTGGAG	59.741	42.308	4.68	4.61	0.00	3.86
2426	3770	5.418310	TGAAGTTGCTTTCCTTAAGTTCG	57.582	39.130	0.97	0.00	36.84	3.95
2540	3893	3.548770	TGTGCAAAATGGGCAAATGAAA	58.451	36.364	0.00	0.00	43.91	2.69
2587	3944	0.671796	TATACAGCGATGGGTCACGG	59.328	55.000	5.32	0.00	0.00	4.94
2622	3979	0.034670	AGGCTGGCATCAGAGGTTTC	60.035	55.000	3.38	0.00	43.49	2.78
2738	4101	5.163405	TGGCAGGTACTTAGATCTGATTGTC	60.163	44.000	5.18	0.00	34.60	3.18
2823	4301	6.208644	GTGATGTTACATCACAAAACTTGCT	58.791	36.000	38.11	0.00	45.61	3.91
2859	4347	5.069119	CCAGTACCAGTATCATGCTACAAGA	59.931	44.000	9.26	0.00	0.00	3.02
2862	4350	5.876651	ACCAGTATCATGCTACAAGATGA	57.123	39.130	9.26	0.00	33.20	2.92
2995	4568	6.762187	TGTTTTGTCACCGAGTTGAATAAGTA	59.238	34.615	0.00	0.00	0.00	2.24
3186	4779	9.221775	GTTTAGGCATAAATGTTTAGTCATTCG	57.778	33.333	6.86	0.00	37.09	3.34
3187	4780	8.500753	TTAGGCATAAATGTTTAGTCATTCGT	57.499	30.769	0.00	0.00	37.09	3.85
3188	4781	7.391148	AGGCATAAATGTTTAGTCATTCGTT	57.609	32.000	0.00	0.00	37.09	3.85
3189	4782	7.250569	AGGCATAAATGTTTAGTCATTCGTTG	58.749	34.615	0.00	0.00	37.09	4.10
3190	4783	7.027161	GGCATAAATGTTTAGTCATTCGTTGT	58.973	34.615	0.00	0.00	37.09	3.32
3191	4784	8.178964	GGCATAAATGTTTAGTCATTCGTTGTA	58.821	33.333	0.00	0.00	37.09	2.41
3192	4785	9.549509	GCATAAATGTTTAGTCATTCGTTGTAA	57.450	29.630	0.00	0.00	37.09	2.41
3197	4790	9.607285	AATGTTTAGTCATTCGTTGTAATGAAC	57.393	29.630	1.65	0.00	45.05	3.18
3198	4791	8.144155	TGTTTAGTCATTCGTTGTAATGAACA	57.856	30.769	1.65	0.57	45.05	3.18
3538	5144	2.639839	GCCTCTGGATTAGGGCATCTAA	59.360	50.000	0.00	2.01	40.45	2.10
3590	5196	2.346803	TGCTCAAACTCTTATGCCGTC	58.653	47.619	0.00	0.00	0.00	4.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
115	117	9.097257	ACAGAGTTAACCAAAATGAAACAAATG	57.903	29.630	0.88	0.00	0.00	2.32
410	420	9.434420	TCCGAAAAATCAGCAAATATTCAAATT	57.566	25.926	0.00	0.00	0.00	1.82
412	422	7.061673	CGTCCGAAAAATCAGCAAATATTCAAA	59.938	33.333	0.00	0.00	0.00	2.69
438	518	0.749049	GAAGATGCAAATGGGAGGGC	59.251	55.000	0.00	0.00	0.00	5.19
459	539	6.790319	ACTGAATGACCCCTAATAAACTGTT	58.210	36.000	0.00	0.00	0.00	3.16
460	540	6.012858	TGACTGAATGACCCCTAATAAACTGT	60.013	38.462	0.00	0.00	0.00	3.55
461	541	6.316390	GTGACTGAATGACCCCTAATAAACTG	59.684	42.308	0.00	0.00	0.00	3.16
462	542	6.215636	AGTGACTGAATGACCCCTAATAAACT	59.784	38.462	0.00	0.00	0.00	2.66
463	543	6.415573	AGTGACTGAATGACCCCTAATAAAC	58.584	40.000	0.00	0.00	0.00	2.01
464	544	6.443849	AGAGTGACTGAATGACCCCTAATAAA	59.556	38.462	0.00	0.00	0.00	1.40
465	545	5.964477	AGAGTGACTGAATGACCCCTAATAA	59.036	40.000	0.00	0.00	0.00	1.40
466	546	5.529289	AGAGTGACTGAATGACCCCTAATA	58.471	41.667	0.00	0.00	0.00	0.98
467	547	4.366267	AGAGTGACTGAATGACCCCTAAT	58.634	43.478	0.00	0.00	0.00	1.73
468	548	3.769844	GAGAGTGACTGAATGACCCCTAA	59.230	47.826	0.00	0.00	0.00	2.69
469	549	3.011821	AGAGAGTGACTGAATGACCCCTA	59.988	47.826	0.00	0.00	0.00	3.53
470	550	2.183679	GAGAGTGACTGAATGACCCCT	58.816	52.381	0.00	0.00	0.00	4.79
471	551	2.093764	CAGAGAGTGACTGAATGACCCC	60.094	54.545	0.00	0.00	37.54	4.95
472	552	2.828520	TCAGAGAGTGACTGAATGACCC	59.171	50.000	0.00	0.00	40.70	4.46
473	553	4.527509	TTCAGAGAGTGACTGAATGACC	57.472	45.455	0.00	0.00	45.44	4.02
479	559	2.629617	TGCATGTTCAGAGAGTGACTGA	59.370	45.455	0.00	0.00	41.70	3.41
480	560	3.036075	TGCATGTTCAGAGAGTGACTG	57.964	47.619	0.00	0.00	33.71	3.51
481	561	3.260128	TCATGCATGTTCAGAGAGTGACT	59.740	43.478	25.43	0.00	33.71	3.41
482	562	3.593096	TCATGCATGTTCAGAGAGTGAC	58.407	45.455	25.43	0.00	33.71	3.67
483	563	3.512724	TCTCATGCATGTTCAGAGAGTGA	59.487	43.478	25.43	2.31	32.11	3.41
484	564	3.858247	TCTCATGCATGTTCAGAGAGTG	58.142	45.455	25.43	0.00	32.11	3.51
555	712	9.158364	GCAAATGATAGTGTTCGTAAATGTATG	57.842	33.333	0.00	0.00	0.00	2.39
659	828	8.332996	TCTTCTGAATTTCTTTGGAATCTCTG	57.667	34.615	0.00	0.00	0.00	3.35
765	1769	1.302431	GGGTTGGGCCAAATGTTGC	60.302	57.895	22.82	7.18	39.65	4.17
1612	2846	2.765807	ATCTCCAGGACGGGGCTG	60.766	66.667	0.00	0.00	33.78	4.85
1795	3053	4.147449	TGCAGCACCTCCGGATCG	62.147	66.667	3.57	0.00	0.00	3.69
1796	3054	2.202987	CTGCAGCACCTCCGGATC	60.203	66.667	3.57	0.00	0.00	3.36
1797	3055	4.479993	GCTGCAGCACCTCCGGAT	62.480	66.667	33.36	0.00	41.59	4.18
1814	3072	0.592247	GCGCATGGCCAATCTTAACG	60.592	55.000	10.96	7.27	34.80	3.18
1910	3168	7.817478	TGAACTACTCCAAGTGTATACAATGTG	59.183	37.037	7.25	7.66	0.00	3.21
1919	3177	8.185506	TGAAGTTATGAACTACTCCAAGTGTA	57.814	34.615	0.00	0.00	41.91	2.90
1921	3179	9.823647	ATATGAAGTTATGAACTACTCCAAGTG	57.176	33.333	0.00	0.00	41.91	3.16
1922	3180	9.823647	CATATGAAGTTATGAACTACTCCAAGT	57.176	33.333	0.00	0.00	41.91	3.16
1923	3181	9.823647	ACATATGAAGTTATGAACTACTCCAAG	57.176	33.333	10.38	0.00	41.91	3.61
1953	3264	6.349280	GGCACACATGTTACTGACAAATGTAT	60.349	38.462	0.00	0.00	42.62	2.29
2107	3434	2.564771	CACTTTCTTGAGGTCACTGCA	58.435	47.619	0.00	0.00	0.00	4.41
2166	3493	8.827832	AATGATCTTTGAATACCTGGAAATGA	57.172	30.769	0.00	0.00	0.00	2.57
2170	3497	9.527157	TGTAAAATGATCTTTGAATACCTGGAA	57.473	29.630	0.00	0.00	0.00	3.53
2587	3944	2.469516	CCTGACGCCATAAACCGGC	61.470	63.158	0.00	0.00	46.62	6.13
2622	3979	3.737172	CAAAAGGGTCAGCGGGCG	61.737	66.667	0.00	0.00	0.00	6.13
2823	4301	9.871175	TGATACTGGTACTGGTACATATTTAGA	57.129	33.333	12.14	0.00	38.20	2.10
2859	4347	2.424601	CAGCCAACATTCCAACGATCAT	59.575	45.455	0.00	0.00	0.00	2.45
2862	4350	1.812571	GACAGCCAACATTCCAACGAT	59.187	47.619	0.00	0.00	0.00	3.73
2909	4482	2.183478	AATCTGGATTCACGCACACA	57.817	45.000	0.00	0.00	0.00	3.72
2995	4568	6.156748	TCATACTTATGAACATAGGCGTGT	57.843	37.500	0.00	0.00	39.58	4.49
3140	4728	7.494625	CCTAAACTGACTTAAACACTGAACTGA	59.505	37.037	0.00	0.00	0.00	3.41
3186	4779	8.810652	TTTTCAATTAGCCTGTTCATTACAAC	57.189	30.769	0.00	0.00	36.02	3.32
3187	4780	9.474920	CTTTTTCAATTAGCCTGTTCATTACAA	57.525	29.630	0.00	0.00	36.02	2.41
3188	4781	8.855110	TCTTTTTCAATTAGCCTGTTCATTACA	58.145	29.630	0.00	0.00	34.95	2.41
3189	4782	9.691362	TTCTTTTTCAATTAGCCTGTTCATTAC	57.309	29.630	0.00	0.00	0.00	1.89
3190	4783	9.912634	CTTCTTTTTCAATTAGCCTGTTCATTA	57.087	29.630	0.00	0.00	0.00	1.90
3191	4784	8.641541	TCTTCTTTTTCAATTAGCCTGTTCATT	58.358	29.630	0.00	0.00	0.00	2.57
3192	4785	8.181904	TCTTCTTTTTCAATTAGCCTGTTCAT	57.818	30.769	0.00	0.00	0.00	2.57
3193	4786	7.581213	TCTTCTTTTTCAATTAGCCTGTTCA	57.419	32.000	0.00	0.00	0.00	3.18
3194	4787	8.352942	TCTTCTTCTTTTTCAATTAGCCTGTTC	58.647	33.333	0.00	0.00	0.00	3.18
3195	4788	8.237811	TCTTCTTCTTTTTCAATTAGCCTGTT	57.762	30.769	0.00	0.00	0.00	3.16
3196	4789	7.823745	TCTTCTTCTTTTTCAATTAGCCTGT	57.176	32.000	0.00	0.00	0.00	4.00
3197	4790	9.533253	TTTTCTTCTTCTTTTTCAATTAGCCTG	57.467	29.630	0.00	0.00	0.00	4.85
3198	4791	9.755804	CTTTTCTTCTTCTTTTTCAATTAGCCT	57.244	29.630	0.00	0.00	0.00	4.58
3285	4891	0.881118	TTTTCAGAACGATGGCTGCC	59.119	50.000	12.87	12.87	32.27	4.85
3538	5144	9.942850	CTAAATCCATTTAATTGGTTCAAACCT	57.057	29.630	14.48	0.00	39.40	3.50
3590	5196	4.701956	ACCTTCTTCATGTAAAATGGCG	57.298	40.909	0.00	0.00	0.00	5.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.