Multiple sequence alignment - TraesCS2A01G555700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G555700 chr2A 100.000 3564 0 0 1 3564 760026606 760023043 0.000000e+00 6582
1 TraesCS2A01G555700 chr2A 97.531 243 6 0 3322 3564 603959698 603959940 1.980000e-112 416
2 TraesCS2A01G555700 chr2A 97.143 245 7 0 3320 3564 1246437 1246681 7.120000e-112 414
3 TraesCS2A01G555700 chr6A 97.822 3214 63 5 113 3321 604402043 604398832 0.000000e+00 5541
4 TraesCS2A01G555700 chr6A 89.865 3029 235 37 332 3321 174110193 174113188 0.000000e+00 3827
5 TraesCS2A01G555700 chr7D 90.302 3248 238 39 117 3321 111561536 111564749 0.000000e+00 4181
6 TraesCS2A01G555700 chr7D 94.386 2387 115 11 948 3321 100499116 100496736 0.000000e+00 3648
7 TraesCS2A01G555700 chr7D 87.910 488 53 5 120 604 60474111 60474595 1.440000e-158 569
8 TraesCS2A01G555700 chr7D 82.362 669 82 14 118 762 100525132 100524476 1.870000e-152 549
9 TraesCS2A01G555700 chr5A 89.701 3243 240 41 118 3321 256448442 256445255 0.000000e+00 4052
10 TraesCS2A01G555700 chr5A 84.926 1486 166 25 117 1576 557573912 557572459 0.000000e+00 1450
11 TraesCS2A01G555700 chr5A 97.541 244 5 1 3322 3564 33063274 33063031 1.980000e-112 416
12 TraesCS2A01G555700 chr5A 97.531 243 6 0 3322 3564 636893864 636894106 1.980000e-112 416
13 TraesCS2A01G555700 chr3A 89.579 3253 255 35 117 3321 590363911 590367127 0.000000e+00 4052
14 TraesCS2A01G555700 chr3A 97.531 243 6 0 3322 3564 500507489 500507247 1.980000e-112 416
15 TraesCS2A01G555700 chr3A 97.531 243 6 0 3322 3564 500517480 500517238 1.980000e-112 416
16 TraesCS2A01G555700 chr1D 94.336 2366 111 13 973 3321 33164720 33162361 0.000000e+00 3605
17 TraesCS2A01G555700 chr1D 96.146 1505 47 5 1826 3321 91482122 91483624 0.000000e+00 2447
18 TraesCS2A01G555700 chr1D 81.622 789 99 16 118 881 33165837 33165070 2.350000e-171 612
19 TraesCS2A01G555700 chr1D 81.105 778 93 22 118 868 91480427 91481177 1.110000e-159 573
20 TraesCS2A01G555700 chr3D 95.669 2055 69 9 1178 3225 603528213 603530254 0.000000e+00 3284
21 TraesCS2A01G555700 chr3D 96.667 120 3 1 1 119 432275683 432275564 7.800000e-47 198
22 TraesCS2A01G555700 chr7A 88.749 1742 161 13 546 2274 80019730 80018011 0.000000e+00 2098
23 TraesCS2A01G555700 chr7A 89.537 497 48 4 118 610 80020217 80019721 8.400000e-176 627
24 TraesCS2A01G555700 chr6B 85.484 1488 158 32 119 1576 718991053 718992512 0.000000e+00 1498
25 TraesCS2A01G555700 chr6B 85.422 1468 139 30 117 1531 307069342 307070787 0.000000e+00 1456
26 TraesCS2A01G555700 chr6B 88.057 494 53 6 117 606 424468786 424468295 6.630000e-162 580
27 TraesCS2A01G555700 chr6B 96.667 120 3 1 1 119 370397376 370397257 7.800000e-47 198
28 TraesCS2A01G555700 chr6B 96.667 120 3 1 1 119 675874810 675874929 7.800000e-47 198
29 TraesCS2A01G555700 chr3B 84.316 1492 164 32 117 1576 531099756 531101209 0.000000e+00 1395
30 TraesCS2A01G555700 chr1A 97.531 243 6 0 3322 3564 46039458 46039700 1.980000e-112 416
31 TraesCS2A01G555700 chr1A 97.531 243 6 0 3322 3564 347785320 347785562 1.980000e-112 416
32 TraesCS2A01G555700 chr1A 97.531 243 6 0 3322 3564 347795192 347795434 1.980000e-112 416
33 TraesCS2A01G555700 chr5D 97.458 118 2 1 1 117 8134543 8134426 2.170000e-47 200
34 TraesCS2A01G555700 chr7B 96.667 120 3 1 1 119 179267575 179267456 7.800000e-47 198
35 TraesCS2A01G555700 chr7B 96.667 120 3 1 1 119 656159628 656159509 7.800000e-47 198
36 TraesCS2A01G555700 chr5B 96.667 120 3 1 1 119 48070860 48070741 7.800000e-47 198
37 TraesCS2A01G555700 chr4B 96.667 120 3 1 1 119 45877780 45877899 7.800000e-47 198
38 TraesCS2A01G555700 chr2D 96.667 120 3 1 1 119 36642964 36643083 7.800000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G555700 chr2A 760023043 760026606 3563 True 6582.0 6582 100.0000 1 3564 1 chr2A.!!$R1 3563
1 TraesCS2A01G555700 chr6A 604398832 604402043 3211 True 5541.0 5541 97.8220 113 3321 1 chr6A.!!$R1 3208
2 TraesCS2A01G555700 chr6A 174110193 174113188 2995 False 3827.0 3827 89.8650 332 3321 1 chr6A.!!$F1 2989
3 TraesCS2A01G555700 chr7D 111561536 111564749 3213 False 4181.0 4181 90.3020 117 3321 1 chr7D.!!$F2 3204
4 TraesCS2A01G555700 chr7D 100496736 100499116 2380 True 3648.0 3648 94.3860 948 3321 1 chr7D.!!$R1 2373
5 TraesCS2A01G555700 chr7D 100524476 100525132 656 True 549.0 549 82.3620 118 762 1 chr7D.!!$R2 644
6 TraesCS2A01G555700 chr5A 256445255 256448442 3187 True 4052.0 4052 89.7010 118 3321 1 chr5A.!!$R2 3203
7 TraesCS2A01G555700 chr5A 557572459 557573912 1453 True 1450.0 1450 84.9260 117 1576 1 chr5A.!!$R3 1459
8 TraesCS2A01G555700 chr3A 590363911 590367127 3216 False 4052.0 4052 89.5790 117 3321 1 chr3A.!!$F1 3204
9 TraesCS2A01G555700 chr1D 33162361 33165837 3476 True 2108.5 3605 87.9790 118 3321 2 chr1D.!!$R1 3203
10 TraesCS2A01G555700 chr1D 91480427 91483624 3197 False 1510.0 2447 88.6255 118 3321 2 chr1D.!!$F1 3203
11 TraesCS2A01G555700 chr3D 603528213 603530254 2041 False 3284.0 3284 95.6690 1178 3225 1 chr3D.!!$F1 2047
12 TraesCS2A01G555700 chr7A 80018011 80020217 2206 True 1362.5 2098 89.1430 118 2274 2 chr7A.!!$R1 2156
13 TraesCS2A01G555700 chr6B 718991053 718992512 1459 False 1498.0 1498 85.4840 119 1576 1 chr6B.!!$F3 1457
14 TraesCS2A01G555700 chr6B 307069342 307070787 1445 False 1456.0 1456 85.4220 117 1531 1 chr6B.!!$F1 1414
15 TraesCS2A01G555700 chr3B 531099756 531101209 1453 False 1395.0 1395 84.3160 117 1576 1 chr3B.!!$F1 1459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 1031 0.312416 CACCCTCTATCGCTCCTTCG 59.688 60.0 0.0 0.0 0.0 3.79 F
1053 1453 0.319211 TCGGCGAGATGAACGTTGTT 60.319 50.0 5.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2419 0.679002 ATGCTTGCACGATTCTGCCT 60.679 50.0 0.0 0.0 36.21 4.75 R
2584 3038 3.143728 CACCAACACCCTAACTAACCAC 58.856 50.0 0.0 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.413846 AGCATAGTCAGCATACCATGG 57.586 47.619 11.19 11.19 0.00 3.66
25 26 2.974794 AGCATAGTCAGCATACCATGGA 59.025 45.455 21.47 2.01 0.00 3.41
26 27 3.007723 AGCATAGTCAGCATACCATGGAG 59.992 47.826 21.47 9.02 0.00 3.86
27 28 3.332919 CATAGTCAGCATACCATGGAGC 58.667 50.000 21.47 18.68 0.00 4.70
28 29 1.206878 AGTCAGCATACCATGGAGCA 58.793 50.000 21.47 3.01 0.00 4.26
29 30 1.140452 AGTCAGCATACCATGGAGCAG 59.860 52.381 21.47 15.62 0.00 4.24
30 31 1.134280 GTCAGCATACCATGGAGCAGT 60.134 52.381 21.47 0.00 0.00 4.40
31 32 2.103094 GTCAGCATACCATGGAGCAGTA 59.897 50.000 21.47 0.00 0.00 2.74
32 33 2.974794 TCAGCATACCATGGAGCAGTAT 59.025 45.455 21.47 1.90 0.00 2.12
33 34 3.072211 CAGCATACCATGGAGCAGTATG 58.928 50.000 21.47 16.02 43.97 2.39
34 35 2.974794 AGCATACCATGGAGCAGTATGA 59.025 45.455 21.47 0.00 43.90 2.15
35 36 3.007723 AGCATACCATGGAGCAGTATGAG 59.992 47.826 21.47 0.00 43.90 2.90
36 37 3.007290 GCATACCATGGAGCAGTATGAGA 59.993 47.826 21.47 0.00 43.90 3.27
37 38 4.503817 GCATACCATGGAGCAGTATGAGAA 60.504 45.833 21.47 0.00 43.90 2.87
38 39 3.834489 ACCATGGAGCAGTATGAGAAG 57.166 47.619 21.47 0.00 39.69 2.85
39 40 2.158842 ACCATGGAGCAGTATGAGAAGC 60.159 50.000 21.47 0.00 39.69 3.86
40 41 2.158856 CCATGGAGCAGTATGAGAAGCA 60.159 50.000 5.56 0.00 39.69 3.91
41 42 3.496337 CCATGGAGCAGTATGAGAAGCAT 60.496 47.826 5.56 0.00 39.69 3.79
42 43 3.920231 TGGAGCAGTATGAGAAGCATT 57.080 42.857 0.00 0.00 39.69 3.56
43 44 4.226427 TGGAGCAGTATGAGAAGCATTT 57.774 40.909 0.00 0.00 39.69 2.32
44 45 5.357742 TGGAGCAGTATGAGAAGCATTTA 57.642 39.130 0.00 0.00 39.69 1.40
45 46 5.933617 TGGAGCAGTATGAGAAGCATTTAT 58.066 37.500 0.00 0.00 39.69 1.40
46 47 5.761726 TGGAGCAGTATGAGAAGCATTTATG 59.238 40.000 0.00 0.00 39.69 1.90
47 48 5.994054 GGAGCAGTATGAGAAGCATTTATGA 59.006 40.000 0.00 0.00 39.69 2.15
48 49 6.073331 GGAGCAGTATGAGAAGCATTTATGAC 60.073 42.308 0.00 0.00 39.69 3.06
49 50 6.351711 AGCAGTATGAGAAGCATTTATGACA 58.648 36.000 0.00 0.00 39.69 3.58
50 51 6.482641 AGCAGTATGAGAAGCATTTATGACAG 59.517 38.462 0.00 0.00 39.69 3.51
51 52 6.293298 GCAGTATGAGAAGCATTTATGACAGG 60.293 42.308 0.00 0.00 39.69 4.00
52 53 6.765036 CAGTATGAGAAGCATTTATGACAGGT 59.235 38.462 0.00 0.00 39.69 4.00
53 54 7.928167 CAGTATGAGAAGCATTTATGACAGGTA 59.072 37.037 0.00 0.00 39.69 3.08
54 55 8.486210 AGTATGAGAAGCATTTATGACAGGTAA 58.514 33.333 0.00 0.00 38.44 2.85
55 56 9.277783 GTATGAGAAGCATTTATGACAGGTAAT 57.722 33.333 0.00 0.00 38.44 1.89
56 57 8.757982 ATGAGAAGCATTTATGACAGGTAATT 57.242 30.769 0.00 0.00 31.73 1.40
57 58 7.988737 TGAGAAGCATTTATGACAGGTAATTG 58.011 34.615 0.00 0.00 0.00 2.32
58 59 7.611467 TGAGAAGCATTTATGACAGGTAATTGT 59.389 33.333 0.00 0.00 0.00 2.71
59 60 8.353423 AGAAGCATTTATGACAGGTAATTGTT 57.647 30.769 0.00 0.00 0.00 2.83
60 61 8.462016 AGAAGCATTTATGACAGGTAATTGTTC 58.538 33.333 0.00 0.00 0.00 3.18
61 62 7.701539 AGCATTTATGACAGGTAATTGTTCA 57.298 32.000 0.00 0.00 0.00 3.18
62 63 8.297470 AGCATTTATGACAGGTAATTGTTCAT 57.703 30.769 0.00 0.00 0.00 2.57
63 64 8.408601 AGCATTTATGACAGGTAATTGTTCATC 58.591 33.333 0.00 0.00 0.00 2.92
64 65 7.376866 GCATTTATGACAGGTAATTGTTCATCG 59.623 37.037 0.00 0.00 0.00 3.84
65 66 6.918892 TTATGACAGGTAATTGTTCATCGG 57.081 37.500 0.00 0.00 0.00 4.18
66 67 3.605634 TGACAGGTAATTGTTCATCGGG 58.394 45.455 0.00 0.00 0.00 5.14
67 68 3.262151 TGACAGGTAATTGTTCATCGGGA 59.738 43.478 0.00 0.00 0.00 5.14
68 69 4.258543 GACAGGTAATTGTTCATCGGGAA 58.741 43.478 0.00 0.00 0.00 3.97
69 70 4.658063 ACAGGTAATTGTTCATCGGGAAA 58.342 39.130 0.00 0.00 37.23 3.13
70 71 4.700213 ACAGGTAATTGTTCATCGGGAAAG 59.300 41.667 0.00 0.00 37.23 2.62
71 72 3.694566 AGGTAATTGTTCATCGGGAAAGC 59.305 43.478 0.00 0.00 37.23 3.51
72 73 3.694566 GGTAATTGTTCATCGGGAAAGCT 59.305 43.478 0.00 0.00 37.23 3.74
73 74 4.879545 GGTAATTGTTCATCGGGAAAGCTA 59.120 41.667 0.00 0.00 37.23 3.32
74 75 5.531287 GGTAATTGTTCATCGGGAAAGCTAT 59.469 40.000 0.00 0.00 37.23 2.97
75 76 5.757850 AATTGTTCATCGGGAAAGCTATC 57.242 39.130 0.00 0.00 37.23 2.08
76 77 3.904800 TGTTCATCGGGAAAGCTATCA 57.095 42.857 0.00 0.00 37.23 2.15
77 78 4.422073 TGTTCATCGGGAAAGCTATCAT 57.578 40.909 0.00 0.00 37.23 2.45
78 79 4.780815 TGTTCATCGGGAAAGCTATCATT 58.219 39.130 0.00 0.00 37.23 2.57
79 80 5.924356 TGTTCATCGGGAAAGCTATCATTA 58.076 37.500 0.00 0.00 37.23 1.90
80 81 6.353323 TGTTCATCGGGAAAGCTATCATTAA 58.647 36.000 0.00 0.00 37.23 1.40
81 82 6.998074 TGTTCATCGGGAAAGCTATCATTAAT 59.002 34.615 0.00 0.00 37.23 1.40
82 83 8.154203 TGTTCATCGGGAAAGCTATCATTAATA 58.846 33.333 0.00 0.00 37.23 0.98
83 84 8.660373 GTTCATCGGGAAAGCTATCATTAATAG 58.340 37.037 0.00 0.00 37.85 1.73
84 85 7.907389 TCATCGGGAAAGCTATCATTAATAGT 58.093 34.615 0.00 0.00 39.74 2.12
85 86 9.031537 TCATCGGGAAAGCTATCATTAATAGTA 57.968 33.333 0.00 0.00 39.74 1.82
86 87 9.307121 CATCGGGAAAGCTATCATTAATAGTAG 57.693 37.037 0.00 0.00 39.74 2.57
87 88 8.418597 TCGGGAAAGCTATCATTAATAGTAGT 57.581 34.615 0.00 0.00 39.74 2.73
88 89 8.304596 TCGGGAAAGCTATCATTAATAGTAGTG 58.695 37.037 0.00 0.00 39.74 2.74
89 90 7.545965 CGGGAAAGCTATCATTAATAGTAGTGG 59.454 40.741 0.00 0.00 39.74 4.00
90 91 7.824779 GGGAAAGCTATCATTAATAGTAGTGGG 59.175 40.741 0.00 0.00 39.74 4.61
91 92 8.376270 GGAAAGCTATCATTAATAGTAGTGGGT 58.624 37.037 0.00 0.00 39.74 4.51
92 93 9.425577 GAAAGCTATCATTAATAGTAGTGGGTC 57.574 37.037 0.00 0.59 39.74 4.46
93 94 8.492415 AAGCTATCATTAATAGTAGTGGGTCA 57.508 34.615 0.00 0.00 39.74 4.02
94 95 8.671987 AGCTATCATTAATAGTAGTGGGTCAT 57.328 34.615 0.00 0.00 39.74 3.06
95 96 8.754080 AGCTATCATTAATAGTAGTGGGTCATC 58.246 37.037 0.00 0.00 39.74 2.92
96 97 8.531982 GCTATCATTAATAGTAGTGGGTCATCA 58.468 37.037 7.66 0.00 39.74 3.07
99 100 8.547481 TCATTAATAGTAGTGGGTCATCAAGA 57.453 34.615 0.00 0.00 0.00 3.02
100 101 8.988060 TCATTAATAGTAGTGGGTCATCAAGAA 58.012 33.333 0.00 0.00 0.00 2.52
101 102 9.046296 CATTAATAGTAGTGGGTCATCAAGAAC 57.954 37.037 0.00 0.00 0.00 3.01
102 103 6.620877 AATAGTAGTGGGTCATCAAGAACA 57.379 37.500 0.00 0.00 34.85 3.18
103 104 6.814954 ATAGTAGTGGGTCATCAAGAACAT 57.185 37.500 0.00 0.00 34.85 2.71
104 105 5.505181 AGTAGTGGGTCATCAAGAACATT 57.495 39.130 0.00 0.00 34.85 2.71
105 106 5.491982 AGTAGTGGGTCATCAAGAACATTC 58.508 41.667 0.00 0.00 34.85 2.67
106 107 4.647564 AGTGGGTCATCAAGAACATTCT 57.352 40.909 0.00 0.00 39.74 2.40
107 108 4.583871 AGTGGGTCATCAAGAACATTCTC 58.416 43.478 0.00 0.00 36.28 2.87
108 109 4.288105 AGTGGGTCATCAAGAACATTCTCT 59.712 41.667 0.00 0.00 36.28 3.10
109 110 5.485353 AGTGGGTCATCAAGAACATTCTCTA 59.515 40.000 0.00 0.00 36.28 2.43
110 111 6.013379 AGTGGGTCATCAAGAACATTCTCTAA 60.013 38.462 0.00 0.00 36.28 2.10
111 112 6.092807 GTGGGTCATCAAGAACATTCTCTAAC 59.907 42.308 0.00 0.00 36.28 2.34
112 113 5.586643 GGGTCATCAAGAACATTCTCTAACC 59.413 44.000 0.00 0.13 36.28 2.85
113 114 6.410540 GGTCATCAAGAACATTCTCTAACCT 58.589 40.000 0.00 0.00 36.28 3.50
114 115 7.364762 GGGTCATCAAGAACATTCTCTAACCTA 60.365 40.741 0.00 0.00 36.28 3.08
115 116 7.708752 GGTCATCAAGAACATTCTCTAACCTAG 59.291 40.741 0.00 0.00 36.28 3.02
357 364 2.691409 TGCTCCTACTAATGTGGCAC 57.309 50.000 11.55 11.55 0.00 5.01
497 515 2.945668 GCCAACATGAATCAGGTCTACC 59.054 50.000 0.00 0.00 0.00 3.18
500 518 4.323792 CCAACATGAATCAGGTCTACCACT 60.324 45.833 0.00 0.00 38.89 4.00
538 590 0.958091 CACCAAAGATGAAACGGGCA 59.042 50.000 0.00 0.00 0.00 5.36
641 761 3.495193 GACGCGGGGAGTTAAAAATTTC 58.505 45.455 12.47 0.00 0.00 2.17
644 764 2.488937 GCGGGGAGTTAAAAATTTCCGA 59.511 45.455 13.11 0.00 38.64 4.55
673 793 2.238521 CATTTAACACCACAGCCCACT 58.761 47.619 0.00 0.00 0.00 4.00
764 889 4.806339 CCGGCTCCTCCCCCTCTT 62.806 72.222 0.00 0.00 0.00 2.85
889 1031 0.312416 CACCCTCTATCGCTCCTTCG 59.688 60.000 0.00 0.00 0.00 3.79
1026 1426 0.324943 CGGTGGTCATGAGGAAGGTT 59.675 55.000 0.00 0.00 0.00 3.50
1053 1453 0.319211 TCGGCGAGATGAACGTTGTT 60.319 50.000 5.00 0.00 0.00 2.83
1116 1519 2.557056 TCCGTCTTCTTCACAATCTCGT 59.443 45.455 0.00 0.00 0.00 4.18
1121 1524 3.005791 TCTTCTTCACAATCTCGTGCTGA 59.994 43.478 0.00 0.00 36.80 4.26
1132 1535 0.832135 TCGTGCTGAGAAAGGAGGGT 60.832 55.000 0.00 0.00 33.34 4.34
1197 1602 2.234908 GCCACTAGTGACCTTGTCAGAT 59.765 50.000 24.68 0.00 43.57 2.90
1752 2187 7.167468 GTGTTGTTGATGACATAAAAGGTGTTC 59.833 37.037 0.00 0.00 38.26 3.18
1799 2235 9.530633 GAACAGAGGATACAATATAGAAACGTT 57.469 33.333 0.00 0.00 41.41 3.99
1983 2419 1.771073 CTCGTTGTTGGCGCTGTCAA 61.771 55.000 7.64 7.46 0.00 3.18
2003 2439 0.171903 GGCAGAATCGTGCAAGCATT 59.828 50.000 0.00 0.00 45.93 3.56
2584 3038 0.176680 CTGAACCTGATCCTGGTCCG 59.823 60.000 7.79 0.00 34.63 4.79
2642 3096 7.161829 GATTAGCTCGATTCGATGTTGTTTA 57.838 36.000 9.54 0.00 34.61 2.01
2710 3164 2.355481 GCTGCAGCTGTTGGCAAC 60.355 61.111 31.33 23.12 44.79 4.17
2901 3358 7.763071 ACGCCATACTAGTAAACTTCTAAAAGG 59.237 37.037 6.70 0.00 36.78 3.11
3059 3516 2.547642 GCTGCTAGTATGGAAGAGGCAG 60.548 54.545 0.00 0.00 45.48 4.85
3321 3781 6.718454 AGAACTGAATGTTTGATTGGATCAGT 59.282 34.615 0.00 0.00 45.64 3.41
3322 3782 6.263516 ACTGAATGTTTGATTGGATCAGTG 57.736 37.500 4.85 0.00 43.03 3.66
3323 3783 5.771666 ACTGAATGTTTGATTGGATCAGTGT 59.228 36.000 4.85 0.00 43.03 3.55
3324 3784 6.942005 ACTGAATGTTTGATTGGATCAGTGTA 59.058 34.615 4.85 0.00 43.03 2.90
3325 3785 7.448161 ACTGAATGTTTGATTGGATCAGTGTAA 59.552 33.333 4.85 0.00 43.03 2.41
3326 3786 7.592938 TGAATGTTTGATTGGATCAGTGTAAC 58.407 34.615 0.00 0.00 40.94 2.50
3327 3787 5.605564 TGTTTGATTGGATCAGTGTAACG 57.394 39.130 0.00 0.00 45.86 3.18
3328 3788 4.083537 TGTTTGATTGGATCAGTGTAACGC 60.084 41.667 0.00 0.00 45.86 4.84
3329 3789 2.627945 TGATTGGATCAGTGTAACGCC 58.372 47.619 0.00 0.00 45.86 5.68
3330 3790 1.940613 GATTGGATCAGTGTAACGCCC 59.059 52.381 0.00 0.00 45.86 6.13
3331 3791 0.981183 TTGGATCAGTGTAACGCCCT 59.019 50.000 0.00 0.00 45.86 5.19
3332 3792 0.535335 TGGATCAGTGTAACGCCCTC 59.465 55.000 0.00 0.00 45.86 4.30
3333 3793 0.527817 GGATCAGTGTAACGCCCTCG 60.528 60.000 0.00 0.00 45.86 4.63
3334 3794 0.454600 GATCAGTGTAACGCCCTCGA 59.545 55.000 0.00 0.00 45.86 4.04
3335 3795 1.067212 GATCAGTGTAACGCCCTCGAT 59.933 52.381 0.00 0.00 45.86 3.59
3336 3796 0.172578 TCAGTGTAACGCCCTCGATG 59.827 55.000 0.00 0.00 45.86 3.84
3337 3797 1.153628 AGTGTAACGCCCTCGATGC 60.154 57.895 0.00 0.00 45.86 3.91
3344 3804 2.970639 GCCCTCGATGCGGCTATA 59.029 61.111 10.26 0.00 42.21 1.31
3345 3805 1.153745 GCCCTCGATGCGGCTATAG 60.154 63.158 10.26 0.00 42.21 1.31
3346 3806 1.153745 CCCTCGATGCGGCTATAGC 60.154 63.158 16.78 16.78 41.14 2.97
3347 3807 1.599606 CCCTCGATGCGGCTATAGCT 61.600 60.000 23.53 4.19 41.70 3.32
3348 3808 0.179150 CCTCGATGCGGCTATAGCTC 60.179 60.000 23.53 15.77 41.70 4.09
3349 3809 0.179150 CTCGATGCGGCTATAGCTCC 60.179 60.000 23.53 14.86 41.70 4.70
3350 3810 1.153745 CGATGCGGCTATAGCTCCC 60.154 63.158 23.53 12.57 41.70 4.30
3351 3811 1.877576 CGATGCGGCTATAGCTCCCA 61.878 60.000 23.53 17.22 41.70 4.37
3352 3812 0.390472 GATGCGGCTATAGCTCCCAC 60.390 60.000 23.53 6.29 41.70 4.61
3353 3813 2.049063 GCGGCTATAGCTCCCACG 60.049 66.667 23.53 18.20 41.70 4.94
3354 3814 2.857744 GCGGCTATAGCTCCCACGT 61.858 63.158 23.53 0.00 41.70 4.49
3355 3815 1.007271 CGGCTATAGCTCCCACGTG 60.007 63.158 23.53 9.08 41.70 4.49
3356 3816 1.735376 CGGCTATAGCTCCCACGTGT 61.735 60.000 23.53 0.00 41.70 4.49
3357 3817 0.032267 GGCTATAGCTCCCACGTGTC 59.968 60.000 23.53 0.00 41.70 3.67
3358 3818 0.317938 GCTATAGCTCCCACGTGTCG 60.318 60.000 17.75 4.04 38.21 4.35
3359 3819 1.306148 CTATAGCTCCCACGTGTCGA 58.694 55.000 15.65 8.55 0.00 4.20
3360 3820 1.264557 CTATAGCTCCCACGTGTCGAG 59.735 57.143 20.16 20.16 0.00 4.04
3361 3821 1.384989 ATAGCTCCCACGTGTCGAGG 61.385 60.000 23.66 14.89 37.35 4.63
3363 3823 3.680786 CTCCCACGTGTCGAGGCA 61.681 66.667 15.65 0.00 36.35 4.75
3364 3824 3.916392 CTCCCACGTGTCGAGGCAC 62.916 68.421 15.65 0.00 36.35 5.01
3374 3834 3.545724 TCGAGGCACGACTTAGAGA 57.454 52.632 2.07 0.00 46.45 3.10
3375 3835 1.085091 TCGAGGCACGACTTAGAGAC 58.915 55.000 2.07 0.00 46.45 3.36
3376 3836 0.803117 CGAGGCACGACTTAGAGACA 59.197 55.000 0.00 0.00 45.77 3.41
3377 3837 1.402259 CGAGGCACGACTTAGAGACAT 59.598 52.381 0.00 0.00 45.77 3.06
3378 3838 2.612672 CGAGGCACGACTTAGAGACATA 59.387 50.000 0.00 0.00 45.77 2.29
3379 3839 3.064958 CGAGGCACGACTTAGAGACATAA 59.935 47.826 0.00 0.00 45.77 1.90
3380 3840 4.352887 GAGGCACGACTTAGAGACATAAC 58.647 47.826 0.00 0.00 0.00 1.89
3381 3841 3.130693 AGGCACGACTTAGAGACATAACC 59.869 47.826 0.00 0.00 0.00 2.85
3382 3842 3.106672 GCACGACTTAGAGACATAACCG 58.893 50.000 0.00 0.00 0.00 4.44
3383 3843 3.106672 CACGACTTAGAGACATAACCGC 58.893 50.000 0.00 0.00 0.00 5.68
3384 3844 2.751259 ACGACTTAGAGACATAACCGCA 59.249 45.455 0.00 0.00 0.00 5.69
3385 3845 3.380637 ACGACTTAGAGACATAACCGCAT 59.619 43.478 0.00 0.00 0.00 4.73
3386 3846 4.142227 ACGACTTAGAGACATAACCGCATT 60.142 41.667 0.00 0.00 0.00 3.56
3387 3847 4.207224 CGACTTAGAGACATAACCGCATTG 59.793 45.833 0.00 0.00 0.00 2.82
3388 3848 5.339008 ACTTAGAGACATAACCGCATTGA 57.661 39.130 0.00 0.00 0.00 2.57
3389 3849 5.730550 ACTTAGAGACATAACCGCATTGAA 58.269 37.500 0.00 0.00 0.00 2.69
3390 3850 6.170506 ACTTAGAGACATAACCGCATTGAAA 58.829 36.000 0.00 0.00 0.00 2.69
3391 3851 6.313905 ACTTAGAGACATAACCGCATTGAAAG 59.686 38.462 0.00 0.00 0.00 2.62
3392 3852 3.375299 AGAGACATAACCGCATTGAAAGC 59.625 43.478 0.00 0.00 0.00 3.51
3393 3853 3.081061 AGACATAACCGCATTGAAAGCA 58.919 40.909 0.00 0.00 0.00 3.91
3394 3854 3.505680 AGACATAACCGCATTGAAAGCAA 59.494 39.130 0.00 0.00 38.60 3.91
3395 3855 4.158394 AGACATAACCGCATTGAAAGCAAT 59.842 37.500 0.00 0.00 45.33 3.56
3404 3864 3.648339 ATTGAAAGCAATGTCGCAAGT 57.352 38.095 0.00 0.00 42.91 3.16
3405 3865 3.435105 TTGAAAGCAATGTCGCAAGTT 57.565 38.095 0.00 0.00 39.48 2.66
3406 3866 4.560136 TTGAAAGCAATGTCGCAAGTTA 57.440 36.364 0.00 0.00 39.48 2.24
3407 3867 4.145876 TGAAAGCAATGTCGCAAGTTAG 57.854 40.909 0.00 0.00 39.48 2.34
3408 3868 3.058293 TGAAAGCAATGTCGCAAGTTAGG 60.058 43.478 0.00 0.00 39.48 2.69
3409 3869 0.804989 AGCAATGTCGCAAGTTAGGC 59.195 50.000 0.00 0.00 39.48 3.93
3410 3870 0.521291 GCAATGTCGCAAGTTAGGCA 59.479 50.000 0.00 0.00 39.48 4.75
3411 3871 1.068610 GCAATGTCGCAAGTTAGGCAA 60.069 47.619 0.00 0.00 39.48 4.52
3412 3872 2.415893 GCAATGTCGCAAGTTAGGCAAT 60.416 45.455 0.00 0.00 39.48 3.56
3413 3873 3.429085 CAATGTCGCAAGTTAGGCAATC 58.571 45.455 0.00 0.00 39.48 2.67
3414 3874 2.177394 TGTCGCAAGTTAGGCAATCA 57.823 45.000 0.00 0.00 39.48 2.57
3415 3875 2.710377 TGTCGCAAGTTAGGCAATCAT 58.290 42.857 0.00 0.00 39.48 2.45
3416 3876 2.677836 TGTCGCAAGTTAGGCAATCATC 59.322 45.455 0.00 0.00 39.48 2.92
3417 3877 2.677836 GTCGCAAGTTAGGCAATCATCA 59.322 45.455 0.00 0.00 39.48 3.07
3418 3878 2.677836 TCGCAAGTTAGGCAATCATCAC 59.322 45.455 0.00 0.00 39.48 3.06
3419 3879 2.419673 CGCAAGTTAGGCAATCATCACA 59.580 45.455 0.00 0.00 0.00 3.58
3420 3880 3.119884 CGCAAGTTAGGCAATCATCACAA 60.120 43.478 0.00 0.00 0.00 3.33
3421 3881 4.168760 GCAAGTTAGGCAATCATCACAAC 58.831 43.478 0.00 0.00 0.00 3.32
3422 3882 4.321156 GCAAGTTAGGCAATCATCACAACA 60.321 41.667 0.00 0.00 0.00 3.33
3423 3883 5.622914 GCAAGTTAGGCAATCATCACAACAT 60.623 40.000 0.00 0.00 0.00 2.71
3424 3884 5.824904 AGTTAGGCAATCATCACAACATC 57.175 39.130 0.00 0.00 0.00 3.06
3425 3885 4.641989 AGTTAGGCAATCATCACAACATCC 59.358 41.667 0.00 0.00 0.00 3.51
3426 3886 2.381911 AGGCAATCATCACAACATCCC 58.618 47.619 0.00 0.00 0.00 3.85
3427 3887 2.101783 GGCAATCATCACAACATCCCA 58.898 47.619 0.00 0.00 0.00 4.37
3428 3888 2.696707 GGCAATCATCACAACATCCCAT 59.303 45.455 0.00 0.00 0.00 4.00
3429 3889 3.491964 GGCAATCATCACAACATCCCATG 60.492 47.826 0.00 0.00 0.00 3.66
3431 3891 4.338964 GCAATCATCACAACATCCCATGTA 59.661 41.667 0.00 0.00 44.07 2.29
3432 3892 5.163530 GCAATCATCACAACATCCCATGTAA 60.164 40.000 0.00 0.00 44.07 2.41
3433 3893 6.461927 GCAATCATCACAACATCCCATGTAAT 60.462 38.462 0.00 0.00 44.07 1.89
3434 3894 7.255555 GCAATCATCACAACATCCCATGTAATA 60.256 37.037 0.00 0.00 44.07 0.98
3435 3895 8.799367 CAATCATCACAACATCCCATGTAATAT 58.201 33.333 0.00 0.00 44.07 1.28
3464 3924 8.440771 AGAATAAAAGGGGAGATACATAGTTGG 58.559 37.037 0.00 0.00 0.00 3.77
3465 3925 4.439253 AAAGGGGAGATACATAGTTGGC 57.561 45.455 0.00 0.00 0.00 4.52
3466 3926 3.352611 AGGGGAGATACATAGTTGGCT 57.647 47.619 0.00 0.00 0.00 4.75
3467 3927 3.669949 AGGGGAGATACATAGTTGGCTT 58.330 45.455 0.00 0.00 0.00 4.35
3468 3928 4.827789 AGGGGAGATACATAGTTGGCTTA 58.172 43.478 0.00 0.00 0.00 3.09
3469 3929 4.593634 AGGGGAGATACATAGTTGGCTTAC 59.406 45.833 0.00 0.00 0.00 2.34
3470 3930 4.347000 GGGGAGATACATAGTTGGCTTACA 59.653 45.833 0.00 0.00 0.00 2.41
3471 3931 5.298347 GGGAGATACATAGTTGGCTTACAC 58.702 45.833 0.00 0.00 0.00 2.90
3472 3932 5.070580 GGGAGATACATAGTTGGCTTACACT 59.929 44.000 0.00 0.00 0.00 3.55
3473 3933 6.217294 GGAGATACATAGTTGGCTTACACTC 58.783 44.000 0.00 0.00 0.00 3.51
3474 3934 5.833082 AGATACATAGTTGGCTTACACTCG 58.167 41.667 0.00 0.00 0.00 4.18
3475 3935 2.618053 ACATAGTTGGCTTACACTCGC 58.382 47.619 0.00 0.00 0.00 5.03
3476 3936 1.933853 CATAGTTGGCTTACACTCGCC 59.066 52.381 0.00 0.00 46.46 5.54
3480 3940 4.617875 GGCTTACACTCGCCACAT 57.382 55.556 0.00 0.00 45.59 3.21
3481 3941 2.384203 GGCTTACACTCGCCACATC 58.616 57.895 0.00 0.00 45.59 3.06
3482 3942 0.391130 GGCTTACACTCGCCACATCA 60.391 55.000 0.00 0.00 45.59 3.07
3483 3943 0.721718 GCTTACACTCGCCACATCAC 59.278 55.000 0.00 0.00 0.00 3.06
3484 3944 1.939381 GCTTACACTCGCCACATCACA 60.939 52.381 0.00 0.00 0.00 3.58
3485 3945 2.412870 CTTACACTCGCCACATCACAA 58.587 47.619 0.00 0.00 0.00 3.33
3486 3946 1.790755 TACACTCGCCACATCACAAC 58.209 50.000 0.00 0.00 0.00 3.32
3487 3947 0.179059 ACACTCGCCACATCACAACA 60.179 50.000 0.00 0.00 0.00 3.33
3488 3948 0.943673 CACTCGCCACATCACAACAA 59.056 50.000 0.00 0.00 0.00 2.83
3489 3949 1.333308 CACTCGCCACATCACAACAAA 59.667 47.619 0.00 0.00 0.00 2.83
3490 3950 1.603802 ACTCGCCACATCACAACAAAG 59.396 47.619 0.00 0.00 0.00 2.77
3491 3951 1.603802 CTCGCCACATCACAACAAAGT 59.396 47.619 0.00 0.00 0.00 2.66
3492 3952 2.805671 CTCGCCACATCACAACAAAGTA 59.194 45.455 0.00 0.00 0.00 2.24
3493 3953 2.546368 TCGCCACATCACAACAAAGTAC 59.454 45.455 0.00 0.00 0.00 2.73
3494 3954 2.289274 CGCCACATCACAACAAAGTACA 59.711 45.455 0.00 0.00 0.00 2.90
3495 3955 3.058293 CGCCACATCACAACAAAGTACAT 60.058 43.478 0.00 0.00 0.00 2.29
3496 3956 4.153296 CGCCACATCACAACAAAGTACATA 59.847 41.667 0.00 0.00 0.00 2.29
3497 3957 5.334491 CGCCACATCACAACAAAGTACATAA 60.334 40.000 0.00 0.00 0.00 1.90
3498 3958 6.442952 GCCACATCACAACAAAGTACATAAA 58.557 36.000 0.00 0.00 0.00 1.40
3499 3959 7.090173 GCCACATCACAACAAAGTACATAAAT 58.910 34.615 0.00 0.00 0.00 1.40
3500 3960 8.240682 GCCACATCACAACAAAGTACATAAATA 58.759 33.333 0.00 0.00 0.00 1.40
3522 3982 7.943079 ATAACATTCATCATCCAAACACTCA 57.057 32.000 0.00 0.00 0.00 3.41
3523 3983 6.845758 AACATTCATCATCCAAACACTCAT 57.154 33.333 0.00 0.00 0.00 2.90
3524 3984 6.203808 ACATTCATCATCCAAACACTCATG 57.796 37.500 0.00 0.00 0.00 3.07
3525 3985 5.126545 ACATTCATCATCCAAACACTCATGG 59.873 40.000 0.00 0.00 38.09 3.66
3526 3986 3.018856 TCATCATCCAAACACTCATGGC 58.981 45.455 0.00 0.00 36.62 4.40
3527 3987 1.838112 TCATCCAAACACTCATGGCC 58.162 50.000 0.00 0.00 36.62 5.36
3528 3988 0.819582 CATCCAAACACTCATGGCCC 59.180 55.000 0.00 0.00 36.62 5.80
3529 3989 0.409092 ATCCAAACACTCATGGCCCA 59.591 50.000 0.00 0.00 36.62 5.36
3530 3990 0.187117 TCCAAACACTCATGGCCCAA 59.813 50.000 0.00 0.00 36.62 4.12
3531 3991 0.318120 CCAAACACTCATGGCCCAAC 59.682 55.000 0.00 0.00 0.00 3.77
3532 3992 1.331214 CAAACACTCATGGCCCAACT 58.669 50.000 0.00 0.00 0.00 3.16
3533 3993 2.513753 CAAACACTCATGGCCCAACTA 58.486 47.619 0.00 0.00 0.00 2.24
3534 3994 2.200373 AACACTCATGGCCCAACTAC 57.800 50.000 0.00 0.00 0.00 2.73
3535 3995 0.036388 ACACTCATGGCCCAACTACG 60.036 55.000 0.00 0.00 0.00 3.51
3536 3996 0.249120 CACTCATGGCCCAACTACGA 59.751 55.000 0.00 0.00 0.00 3.43
3537 3997 0.249398 ACTCATGGCCCAACTACGAC 59.751 55.000 0.00 0.00 0.00 4.34
3538 3998 0.806102 CTCATGGCCCAACTACGACG 60.806 60.000 0.00 0.00 0.00 5.12
3539 3999 2.125269 ATGGCCCAACTACGACGC 60.125 61.111 0.00 0.00 0.00 5.19
3540 4000 3.675619 ATGGCCCAACTACGACGCC 62.676 63.158 0.00 0.00 40.16 5.68
3541 4001 4.382320 GGCCCAACTACGACGCCA 62.382 66.667 0.00 0.00 39.50 5.69
3542 4002 2.357760 GCCCAACTACGACGCCAA 60.358 61.111 0.00 0.00 0.00 4.52
3543 4003 1.962306 GCCCAACTACGACGCCAAA 60.962 57.895 0.00 0.00 0.00 3.28
3544 4004 1.508808 GCCCAACTACGACGCCAAAA 61.509 55.000 0.00 0.00 0.00 2.44
3545 4005 1.161843 CCCAACTACGACGCCAAAAT 58.838 50.000 0.00 0.00 0.00 1.82
3546 4006 2.348660 CCCAACTACGACGCCAAAATA 58.651 47.619 0.00 0.00 0.00 1.40
3547 4007 2.350498 CCCAACTACGACGCCAAAATAG 59.650 50.000 0.00 0.00 0.00 1.73
3548 4008 3.255725 CCAACTACGACGCCAAAATAGA 58.744 45.455 0.00 0.00 0.00 1.98
3549 4009 3.680937 CCAACTACGACGCCAAAATAGAA 59.319 43.478 0.00 0.00 0.00 2.10
3550 4010 4.201685 CCAACTACGACGCCAAAATAGAAG 60.202 45.833 0.00 0.00 0.00 2.85
3551 4011 4.445452 ACTACGACGCCAAAATAGAAGA 57.555 40.909 0.00 0.00 0.00 2.87
3552 4012 4.813027 ACTACGACGCCAAAATAGAAGAA 58.187 39.130 0.00 0.00 0.00 2.52
3553 4013 5.232463 ACTACGACGCCAAAATAGAAGAAA 58.768 37.500 0.00 0.00 0.00 2.52
3554 4014 5.697633 ACTACGACGCCAAAATAGAAGAAAA 59.302 36.000 0.00 0.00 0.00 2.29
3555 4015 4.779987 ACGACGCCAAAATAGAAGAAAAC 58.220 39.130 0.00 0.00 0.00 2.43
3556 4016 4.156182 CGACGCCAAAATAGAAGAAAACC 58.844 43.478 0.00 0.00 0.00 3.27
3557 4017 4.482386 GACGCCAAAATAGAAGAAAACCC 58.518 43.478 0.00 0.00 0.00 4.11
3558 4018 3.892588 ACGCCAAAATAGAAGAAAACCCA 59.107 39.130 0.00 0.00 0.00 4.51
3559 4019 4.342665 ACGCCAAAATAGAAGAAAACCCAA 59.657 37.500 0.00 0.00 0.00 4.12
3560 4020 4.684242 CGCCAAAATAGAAGAAAACCCAAC 59.316 41.667 0.00 0.00 0.00 3.77
3561 4021 5.606505 GCCAAAATAGAAGAAAACCCAACA 58.393 37.500 0.00 0.00 0.00 3.33
3562 4022 6.230472 GCCAAAATAGAAGAAAACCCAACAT 58.770 36.000 0.00 0.00 0.00 2.71
3563 4023 6.147656 GCCAAAATAGAAGAAAACCCAACATG 59.852 38.462 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.942236 CCATGGTATGCTGACTATGCTAATT 59.058 40.000 2.57 0.00 37.07 1.40
1 2 5.249163 TCCATGGTATGCTGACTATGCTAAT 59.751 40.000 12.58 0.00 37.07 1.73
2 3 4.592778 TCCATGGTATGCTGACTATGCTAA 59.407 41.667 12.58 0.00 37.07 3.09
3 4 4.159557 TCCATGGTATGCTGACTATGCTA 58.840 43.478 12.58 0.00 37.07 3.49
4 5 2.974794 TCCATGGTATGCTGACTATGCT 59.025 45.455 12.58 0.00 37.07 3.79
5 6 3.332919 CTCCATGGTATGCTGACTATGC 58.667 50.000 12.58 0.00 37.07 3.14
6 7 3.244318 TGCTCCATGGTATGCTGACTATG 60.244 47.826 12.58 7.60 37.87 2.23
7 8 2.974794 TGCTCCATGGTATGCTGACTAT 59.025 45.455 12.58 0.00 0.00 2.12
8 9 2.366590 CTGCTCCATGGTATGCTGACTA 59.633 50.000 12.58 0.00 0.00 2.59
9 10 1.140452 CTGCTCCATGGTATGCTGACT 59.860 52.381 12.58 0.00 0.00 3.41
10 11 1.134280 ACTGCTCCATGGTATGCTGAC 60.134 52.381 26.33 7.95 0.00 3.51
11 12 1.206878 ACTGCTCCATGGTATGCTGA 58.793 50.000 26.33 11.36 0.00 4.26
12 13 2.916702 TACTGCTCCATGGTATGCTG 57.083 50.000 12.58 18.70 0.00 4.41
13 14 2.974794 TCATACTGCTCCATGGTATGCT 59.025 45.455 12.58 3.33 41.18 3.79
14 15 3.007290 TCTCATACTGCTCCATGGTATGC 59.993 47.826 12.58 14.87 41.18 3.14
15 16 4.879197 TCTCATACTGCTCCATGGTATG 57.121 45.455 12.58 11.85 42.13 2.39
16 17 4.262808 GCTTCTCATACTGCTCCATGGTAT 60.263 45.833 12.58 0.00 0.00 2.73
17 18 3.070159 GCTTCTCATACTGCTCCATGGTA 59.930 47.826 12.58 0.00 0.00 3.25
18 19 2.158842 GCTTCTCATACTGCTCCATGGT 60.159 50.000 12.58 0.00 0.00 3.55
19 20 2.158856 TGCTTCTCATACTGCTCCATGG 60.159 50.000 4.97 4.97 0.00 3.66
20 21 3.189618 TGCTTCTCATACTGCTCCATG 57.810 47.619 0.00 0.00 0.00 3.66
21 22 4.434545 AATGCTTCTCATACTGCTCCAT 57.565 40.909 0.00 0.00 34.33 3.41
22 23 3.920231 AATGCTTCTCATACTGCTCCA 57.080 42.857 0.00 0.00 34.33 3.86
23 24 5.994054 TCATAAATGCTTCTCATACTGCTCC 59.006 40.000 0.00 0.00 34.33 4.70
24 25 6.481313 TGTCATAAATGCTTCTCATACTGCTC 59.519 38.462 0.00 0.00 34.33 4.26
25 26 6.351711 TGTCATAAATGCTTCTCATACTGCT 58.648 36.000 0.00 0.00 34.33 4.24
26 27 6.293298 CCTGTCATAAATGCTTCTCATACTGC 60.293 42.308 0.00 0.00 34.33 4.40
27 28 6.765036 ACCTGTCATAAATGCTTCTCATACTG 59.235 38.462 0.00 0.00 34.33 2.74
28 29 6.893583 ACCTGTCATAAATGCTTCTCATACT 58.106 36.000 0.00 0.00 34.33 2.12
29 30 8.662781 TTACCTGTCATAAATGCTTCTCATAC 57.337 34.615 0.00 0.00 34.33 2.39
30 31 9.851686 AATTACCTGTCATAAATGCTTCTCATA 57.148 29.630 0.00 0.00 34.33 2.15
31 32 8.627403 CAATTACCTGTCATAAATGCTTCTCAT 58.373 33.333 0.00 0.00 36.87 2.90
32 33 7.611467 ACAATTACCTGTCATAAATGCTTCTCA 59.389 33.333 0.00 0.00 0.00 3.27
33 34 7.989826 ACAATTACCTGTCATAAATGCTTCTC 58.010 34.615 0.00 0.00 0.00 2.87
34 35 7.944729 ACAATTACCTGTCATAAATGCTTCT 57.055 32.000 0.00 0.00 0.00 2.85
35 36 8.243426 TGAACAATTACCTGTCATAAATGCTTC 58.757 33.333 0.00 0.00 0.00 3.86
36 37 8.121305 TGAACAATTACCTGTCATAAATGCTT 57.879 30.769 0.00 0.00 0.00 3.91
37 38 7.701539 TGAACAATTACCTGTCATAAATGCT 57.298 32.000 0.00 0.00 0.00 3.79
38 39 7.376866 CGATGAACAATTACCTGTCATAAATGC 59.623 37.037 0.00 0.00 0.00 3.56
39 40 7.857389 CCGATGAACAATTACCTGTCATAAATG 59.143 37.037 0.00 0.00 0.00 2.32
40 41 7.013274 CCCGATGAACAATTACCTGTCATAAAT 59.987 37.037 0.00 0.00 0.00 1.40
41 42 6.317642 CCCGATGAACAATTACCTGTCATAAA 59.682 38.462 0.00 0.00 0.00 1.40
42 43 5.820423 CCCGATGAACAATTACCTGTCATAA 59.180 40.000 0.00 0.00 0.00 1.90
43 44 5.129650 TCCCGATGAACAATTACCTGTCATA 59.870 40.000 0.00 0.00 0.00 2.15
44 45 4.080582 TCCCGATGAACAATTACCTGTCAT 60.081 41.667 0.00 0.00 0.00 3.06
45 46 3.262151 TCCCGATGAACAATTACCTGTCA 59.738 43.478 0.00 0.00 0.00 3.58
46 47 3.869065 TCCCGATGAACAATTACCTGTC 58.131 45.455 0.00 0.00 0.00 3.51
47 48 3.992943 TCCCGATGAACAATTACCTGT 57.007 42.857 0.00 0.00 0.00 4.00
48 49 4.438744 GCTTTCCCGATGAACAATTACCTG 60.439 45.833 0.00 0.00 31.05 4.00
49 50 3.694566 GCTTTCCCGATGAACAATTACCT 59.305 43.478 0.00 0.00 31.05 3.08
50 51 3.694566 AGCTTTCCCGATGAACAATTACC 59.305 43.478 0.00 0.00 31.05 2.85
51 52 4.965119 AGCTTTCCCGATGAACAATTAC 57.035 40.909 0.00 0.00 31.05 1.89
52 53 6.353323 TGATAGCTTTCCCGATGAACAATTA 58.647 36.000 0.00 0.00 31.05 1.40
53 54 5.192927 TGATAGCTTTCCCGATGAACAATT 58.807 37.500 0.00 0.00 31.05 2.32
54 55 4.780815 TGATAGCTTTCCCGATGAACAAT 58.219 39.130 0.00 0.00 31.05 2.71
55 56 4.214986 TGATAGCTTTCCCGATGAACAA 57.785 40.909 0.00 0.00 31.05 2.83
56 57 3.904800 TGATAGCTTTCCCGATGAACA 57.095 42.857 0.00 0.00 31.05 3.18
57 58 6.861065 TTAATGATAGCTTTCCCGATGAAC 57.139 37.500 0.00 0.00 31.05 3.18
58 59 8.375506 ACTATTAATGATAGCTTTCCCGATGAA 58.624 33.333 0.00 0.00 41.26 2.57
59 60 7.907389 ACTATTAATGATAGCTTTCCCGATGA 58.093 34.615 0.00 0.00 41.26 2.92
60 61 9.307121 CTACTATTAATGATAGCTTTCCCGATG 57.693 37.037 0.00 0.00 41.26 3.84
61 62 9.036980 ACTACTATTAATGATAGCTTTCCCGAT 57.963 33.333 0.00 0.00 41.26 4.18
62 63 8.304596 CACTACTATTAATGATAGCTTTCCCGA 58.695 37.037 0.00 0.00 41.26 5.14
63 64 7.545965 CCACTACTATTAATGATAGCTTTCCCG 59.454 40.741 0.00 0.00 41.26 5.14
64 65 7.824779 CCCACTACTATTAATGATAGCTTTCCC 59.175 40.741 0.00 0.00 41.26 3.97
65 66 8.376270 ACCCACTACTATTAATGATAGCTTTCC 58.624 37.037 0.00 0.00 41.26 3.13
66 67 9.425577 GACCCACTACTATTAATGATAGCTTTC 57.574 37.037 0.00 0.00 41.26 2.62
67 68 8.934697 TGACCCACTACTATTAATGATAGCTTT 58.065 33.333 0.00 0.00 41.26 3.51
68 69 8.492415 TGACCCACTACTATTAATGATAGCTT 57.508 34.615 0.00 0.00 41.26 3.74
69 70 8.671987 ATGACCCACTACTATTAATGATAGCT 57.328 34.615 0.00 0.00 41.26 3.32
70 71 8.531982 TGATGACCCACTACTATTAATGATAGC 58.468 37.037 0.00 0.00 41.26 2.97
73 74 9.159254 TCTTGATGACCCACTACTATTAATGAT 57.841 33.333 0.00 0.00 0.00 2.45
74 75 8.547481 TCTTGATGACCCACTACTATTAATGA 57.453 34.615 0.00 0.00 0.00 2.57
75 76 9.046296 GTTCTTGATGACCCACTACTATTAATG 57.954 37.037 0.00 0.00 0.00 1.90
76 77 8.768397 TGTTCTTGATGACCCACTACTATTAAT 58.232 33.333 0.00 0.00 0.00 1.40
77 78 8.141298 TGTTCTTGATGACCCACTACTATTAA 57.859 34.615 0.00 0.00 0.00 1.40
78 79 7.727578 TGTTCTTGATGACCCACTACTATTA 57.272 36.000 0.00 0.00 0.00 0.98
79 80 6.620877 TGTTCTTGATGACCCACTACTATT 57.379 37.500 0.00 0.00 0.00 1.73
80 81 6.814954 ATGTTCTTGATGACCCACTACTAT 57.185 37.500 0.00 0.00 0.00 2.12
81 82 6.440647 AGAATGTTCTTGATGACCCACTACTA 59.559 38.462 0.00 0.00 32.55 1.82
82 83 5.249393 AGAATGTTCTTGATGACCCACTACT 59.751 40.000 0.00 0.00 32.55 2.57
83 84 5.491982 AGAATGTTCTTGATGACCCACTAC 58.508 41.667 0.00 0.00 32.55 2.73
84 85 5.485353 AGAGAATGTTCTTGATGACCCACTA 59.515 40.000 0.00 0.00 37.73 2.74
85 86 4.288105 AGAGAATGTTCTTGATGACCCACT 59.712 41.667 0.00 0.00 37.73 4.00
86 87 4.583871 AGAGAATGTTCTTGATGACCCAC 58.416 43.478 0.00 0.00 37.73 4.61
87 88 4.916041 AGAGAATGTTCTTGATGACCCA 57.084 40.909 0.00 0.00 37.73 4.51
88 89 5.586643 GGTTAGAGAATGTTCTTGATGACCC 59.413 44.000 0.00 0.00 37.73 4.46
89 90 6.410540 AGGTTAGAGAATGTTCTTGATGACC 58.589 40.000 0.00 3.84 37.73 4.02
90 91 8.470805 TCTAGGTTAGAGAATGTTCTTGATGAC 58.529 37.037 0.00 0.00 37.73 3.06
91 92 8.470805 GTCTAGGTTAGAGAATGTTCTTGATGA 58.529 37.037 0.00 0.00 37.73 2.92
92 93 8.253810 TGTCTAGGTTAGAGAATGTTCTTGATG 58.746 37.037 0.00 0.00 37.73 3.07
93 94 8.254508 GTGTCTAGGTTAGAGAATGTTCTTGAT 58.745 37.037 0.00 0.00 37.73 2.57
94 95 7.451877 AGTGTCTAGGTTAGAGAATGTTCTTGA 59.548 37.037 0.00 0.00 37.73 3.02
95 96 7.607250 AGTGTCTAGGTTAGAGAATGTTCTTG 58.393 38.462 0.00 0.00 37.73 3.02
96 97 7.784470 AGTGTCTAGGTTAGAGAATGTTCTT 57.216 36.000 0.00 0.00 37.73 2.52
97 98 7.889073 TGTAGTGTCTAGGTTAGAGAATGTTCT 59.111 37.037 0.00 0.00 41.00 3.01
98 99 8.053026 TGTAGTGTCTAGGTTAGAGAATGTTC 57.947 38.462 0.00 0.00 35.04 3.18
99 100 8.418597 TTGTAGTGTCTAGGTTAGAGAATGTT 57.581 34.615 0.00 0.00 35.04 2.71
100 101 7.889073 TCTTGTAGTGTCTAGGTTAGAGAATGT 59.111 37.037 0.00 0.00 35.04 2.71
101 102 8.282455 TCTTGTAGTGTCTAGGTTAGAGAATG 57.718 38.462 0.00 0.00 35.04 2.67
102 103 8.880991 TTCTTGTAGTGTCTAGGTTAGAGAAT 57.119 34.615 0.00 0.00 35.04 2.40
103 104 8.574737 GTTTCTTGTAGTGTCTAGGTTAGAGAA 58.425 37.037 0.00 0.00 35.04 2.87
104 105 7.176340 GGTTTCTTGTAGTGTCTAGGTTAGAGA 59.824 40.741 0.00 0.00 35.04 3.10
105 106 7.177041 AGGTTTCTTGTAGTGTCTAGGTTAGAG 59.823 40.741 0.00 0.00 35.04 2.43
106 107 7.008941 AGGTTTCTTGTAGTGTCTAGGTTAGA 58.991 38.462 0.00 0.00 0.00 2.10
107 108 7.091443 CAGGTTTCTTGTAGTGTCTAGGTTAG 58.909 42.308 0.00 0.00 0.00 2.34
108 109 6.552350 ACAGGTTTCTTGTAGTGTCTAGGTTA 59.448 38.462 0.00 0.00 0.00 2.85
109 110 5.365895 ACAGGTTTCTTGTAGTGTCTAGGTT 59.634 40.000 0.00 0.00 0.00 3.50
110 111 4.900054 ACAGGTTTCTTGTAGTGTCTAGGT 59.100 41.667 0.00 0.00 0.00 3.08
111 112 5.470047 ACAGGTTTCTTGTAGTGTCTAGG 57.530 43.478 0.00 0.00 0.00 3.02
112 113 9.141400 GATTAACAGGTTTCTTGTAGTGTCTAG 57.859 37.037 0.00 0.00 0.00 2.43
113 114 8.092687 GGATTAACAGGTTTCTTGTAGTGTCTA 58.907 37.037 0.00 0.00 0.00 2.59
114 115 6.935208 GGATTAACAGGTTTCTTGTAGTGTCT 59.065 38.462 0.00 0.00 0.00 3.41
115 116 6.128634 CGGATTAACAGGTTTCTTGTAGTGTC 60.129 42.308 0.00 0.00 0.00 3.67
497 515 0.539438 TTTGCCCTTGGTGCCTAGTG 60.539 55.000 0.00 0.00 0.00 2.74
500 518 0.251165 GTCTTTGCCCTTGGTGCCTA 60.251 55.000 0.00 0.00 0.00 3.93
641 761 1.889829 TGTTAAATGGGTTGGCTTCGG 59.110 47.619 0.00 0.00 0.00 4.30
644 764 2.367241 GTGGTGTTAAATGGGTTGGCTT 59.633 45.455 0.00 0.00 0.00 4.35
764 889 3.544684 CATGGATCTGAATCGGGAACAA 58.455 45.455 0.00 0.00 32.24 2.83
1026 1426 1.215382 CATCTCGCCGACCTCAACA 59.785 57.895 0.00 0.00 0.00 3.33
1116 1519 0.397941 CACACCCTCCTTTCTCAGCA 59.602 55.000 0.00 0.00 0.00 4.41
1121 1524 1.774217 TGGCCACACCCTCCTTTCT 60.774 57.895 0.00 0.00 37.83 2.52
1132 1535 1.021202 CGAAGAAAACAGTGGCCACA 58.979 50.000 36.39 0.00 0.00 4.17
1197 1602 4.563580 GGTTCTCACCTTCATAGCAAGTGA 60.564 45.833 0.00 0.00 40.44 3.41
1261 1668 2.738846 ACTGCAAAGCACTATCTTGACG 59.261 45.455 0.00 0.00 33.79 4.35
1266 1673 4.013267 ACTTCACTGCAAAGCACTATCT 57.987 40.909 0.00 0.00 33.79 1.98
1752 2187 8.044060 TGTTCTTCACAAGGCTCTATTTTATG 57.956 34.615 0.00 0.00 29.87 1.90
1983 2419 0.679002 ATGCTTGCACGATTCTGCCT 60.679 50.000 0.00 0.00 36.21 4.75
2003 2439 4.334118 ACGACAGCTGCATGGCCA 62.334 61.111 15.27 8.56 0.00 5.36
2294 2742 8.762481 TTCTCATATAAGGTACAGAGCAGTAA 57.238 34.615 0.00 0.00 0.00 2.24
2584 3038 3.143728 CACCAACACCCTAACTAACCAC 58.856 50.000 0.00 0.00 0.00 4.16
2710 3164 3.812609 TGCCTACAATTGCATATACACGG 59.187 43.478 5.05 0.00 31.31 4.94
2901 3358 6.458888 GCATTATAAAGGTTCAGCTCCACTTC 60.459 42.308 0.00 0.00 0.00 3.01
3059 3516 3.356529 AGGAATGTGACAAGGATCCAC 57.643 47.619 15.82 3.09 0.00 4.02
3328 3788 1.153745 GCTATAGCCGCATCGAGGG 60.154 63.158 14.13 0.00 34.31 4.30
3329 3789 0.179150 GAGCTATAGCCGCATCGAGG 60.179 60.000 21.17 0.00 43.38 4.63
3330 3790 0.179150 GGAGCTATAGCCGCATCGAG 60.179 60.000 21.17 0.00 43.38 4.04
3331 3791 1.595993 GGGAGCTATAGCCGCATCGA 61.596 60.000 21.17 0.00 43.38 3.59
3332 3792 1.153745 GGGAGCTATAGCCGCATCG 60.154 63.158 21.17 0.00 43.38 3.84
3333 3793 0.390472 GTGGGAGCTATAGCCGCATC 60.390 60.000 24.89 15.99 43.38 3.91
3334 3794 1.674057 GTGGGAGCTATAGCCGCAT 59.326 57.895 24.89 9.43 43.38 4.73
3335 3795 2.856628 CGTGGGAGCTATAGCCGCA 61.857 63.158 21.17 21.10 43.38 5.69
3336 3796 2.049063 CGTGGGAGCTATAGCCGC 60.049 66.667 21.17 19.02 43.38 6.53
3337 3797 1.007271 CACGTGGGAGCTATAGCCG 60.007 63.158 21.17 18.10 43.38 5.52
3338 3798 0.032267 GACACGTGGGAGCTATAGCC 59.968 60.000 21.17 12.26 43.38 3.93
3339 3799 0.317938 CGACACGTGGGAGCTATAGC 60.318 60.000 21.57 17.33 42.49 2.97
3340 3800 1.264557 CTCGACACGTGGGAGCTATAG 59.735 57.143 21.57 0.00 0.00 1.31
3341 3801 1.306148 CTCGACACGTGGGAGCTATA 58.694 55.000 21.57 0.00 0.00 1.31
3342 3802 1.384989 CCTCGACACGTGGGAGCTAT 61.385 60.000 25.04 3.08 36.95 2.97
3343 3803 2.044555 CCTCGACACGTGGGAGCTA 61.045 63.158 25.04 4.72 36.95 3.32
3344 3804 3.374402 CCTCGACACGTGGGAGCT 61.374 66.667 25.04 4.48 36.95 4.09
3346 3806 3.680786 TGCCTCGACACGTGGGAG 61.681 66.667 24.04 24.04 40.31 4.30
3347 3807 3.986006 GTGCCTCGACACGTGGGA 61.986 66.667 21.57 15.34 40.31 4.37
3356 3816 1.085091 GTCTCTAAGTCGTGCCTCGA 58.915 55.000 0.00 0.00 46.83 4.04
3357 3817 0.803117 TGTCTCTAAGTCGTGCCTCG 59.197 55.000 0.00 0.00 41.41 4.63
3358 3818 4.352887 GTTATGTCTCTAAGTCGTGCCTC 58.647 47.826 0.00 0.00 0.00 4.70
3359 3819 3.130693 GGTTATGTCTCTAAGTCGTGCCT 59.869 47.826 0.00 0.00 0.00 4.75
3360 3820 3.445857 GGTTATGTCTCTAAGTCGTGCC 58.554 50.000 0.00 0.00 0.00 5.01
3361 3821 3.106672 CGGTTATGTCTCTAAGTCGTGC 58.893 50.000 0.00 0.00 0.00 5.34
3362 3822 3.106672 GCGGTTATGTCTCTAAGTCGTG 58.893 50.000 0.00 0.00 0.00 4.35
3363 3823 2.751259 TGCGGTTATGTCTCTAAGTCGT 59.249 45.455 0.00 0.00 0.00 4.34
3364 3824 3.416119 TGCGGTTATGTCTCTAAGTCG 57.584 47.619 0.00 0.00 0.00 4.18
3365 3825 5.348986 TCAATGCGGTTATGTCTCTAAGTC 58.651 41.667 0.00 0.00 0.00 3.01
3366 3826 5.339008 TCAATGCGGTTATGTCTCTAAGT 57.661 39.130 0.00 0.00 0.00 2.24
3367 3827 6.662414 TTTCAATGCGGTTATGTCTCTAAG 57.338 37.500 0.00 0.00 0.00 2.18
3368 3828 5.064707 GCTTTCAATGCGGTTATGTCTCTAA 59.935 40.000 0.00 0.00 0.00 2.10
3369 3829 4.570772 GCTTTCAATGCGGTTATGTCTCTA 59.429 41.667 0.00 0.00 0.00 2.43
3370 3830 3.375299 GCTTTCAATGCGGTTATGTCTCT 59.625 43.478 0.00 0.00 0.00 3.10
3371 3831 3.126858 TGCTTTCAATGCGGTTATGTCTC 59.873 43.478 0.00 0.00 0.00 3.36
3372 3832 3.081061 TGCTTTCAATGCGGTTATGTCT 58.919 40.909 0.00 0.00 0.00 3.41
3373 3833 3.485947 TGCTTTCAATGCGGTTATGTC 57.514 42.857 0.00 0.00 0.00 3.06
3374 3834 3.932545 TTGCTTTCAATGCGGTTATGT 57.067 38.095 0.00 0.00 0.00 2.29
3384 3844 3.648339 ACTTGCGACATTGCTTTCAAT 57.352 38.095 0.00 0.00 43.31 2.57
3385 3845 3.435105 AACTTGCGACATTGCTTTCAA 57.565 38.095 0.00 0.00 36.51 2.69
3386 3846 3.058293 CCTAACTTGCGACATTGCTTTCA 60.058 43.478 0.00 0.00 35.36 2.69
3387 3847 3.492313 CCTAACTTGCGACATTGCTTTC 58.508 45.455 0.00 0.00 35.36 2.62
3388 3848 2.351738 GCCTAACTTGCGACATTGCTTT 60.352 45.455 0.00 0.00 35.36 3.51
3389 3849 1.200020 GCCTAACTTGCGACATTGCTT 59.800 47.619 0.00 0.00 35.36 3.91
3390 3850 0.804989 GCCTAACTTGCGACATTGCT 59.195 50.000 0.00 0.00 35.36 3.91
3391 3851 0.521291 TGCCTAACTTGCGACATTGC 59.479 50.000 0.00 0.00 0.00 3.56
3392 3852 2.987413 TTGCCTAACTTGCGACATTG 57.013 45.000 0.00 0.00 0.00 2.82
3393 3853 3.081061 TGATTGCCTAACTTGCGACATT 58.919 40.909 0.00 0.00 0.00 2.71
3394 3854 2.710377 TGATTGCCTAACTTGCGACAT 58.290 42.857 0.00 0.00 0.00 3.06
3395 3855 2.177394 TGATTGCCTAACTTGCGACA 57.823 45.000 0.00 0.00 0.00 4.35
3396 3856 2.677836 TGATGATTGCCTAACTTGCGAC 59.322 45.455 0.00 0.00 0.00 5.19
3397 3857 2.677836 GTGATGATTGCCTAACTTGCGA 59.322 45.455 0.00 0.00 0.00 5.10
3398 3858 2.419673 TGTGATGATTGCCTAACTTGCG 59.580 45.455 0.00 0.00 0.00 4.85
3399 3859 4.168760 GTTGTGATGATTGCCTAACTTGC 58.831 43.478 0.00 0.00 0.00 4.01
3400 3860 5.375417 TGTTGTGATGATTGCCTAACTTG 57.625 39.130 0.00 0.00 0.00 3.16
3401 3861 5.126061 GGATGTTGTGATGATTGCCTAACTT 59.874 40.000 0.00 0.00 0.00 2.66
3402 3862 4.641989 GGATGTTGTGATGATTGCCTAACT 59.358 41.667 0.00 0.00 0.00 2.24
3403 3863 4.202050 GGGATGTTGTGATGATTGCCTAAC 60.202 45.833 0.00 0.00 0.00 2.34
3404 3864 3.953612 GGGATGTTGTGATGATTGCCTAA 59.046 43.478 0.00 0.00 0.00 2.69
3405 3865 3.053768 TGGGATGTTGTGATGATTGCCTA 60.054 43.478 0.00 0.00 0.00 3.93
3406 3866 2.291735 TGGGATGTTGTGATGATTGCCT 60.292 45.455 0.00 0.00 0.00 4.75
3407 3867 2.101783 TGGGATGTTGTGATGATTGCC 58.898 47.619 0.00 0.00 0.00 4.52
3408 3868 3.131577 ACATGGGATGTTGTGATGATTGC 59.868 43.478 0.00 0.00 41.63 3.56
3409 3869 4.994907 ACATGGGATGTTGTGATGATTG 57.005 40.909 0.00 0.00 41.63 2.67
3410 3870 8.945195 ATATTACATGGGATGTTGTGATGATT 57.055 30.769 0.00 0.00 41.63 2.57
3438 3898 8.440771 CCAACTATGTATCTCCCCTTTTATTCT 58.559 37.037 0.00 0.00 0.00 2.40
3439 3899 7.175119 GCCAACTATGTATCTCCCCTTTTATTC 59.825 40.741 0.00 0.00 0.00 1.75
3440 3900 7.004691 GCCAACTATGTATCTCCCCTTTTATT 58.995 38.462 0.00 0.00 0.00 1.40
3441 3901 6.332901 AGCCAACTATGTATCTCCCCTTTTAT 59.667 38.462 0.00 0.00 0.00 1.40
3442 3902 5.670361 AGCCAACTATGTATCTCCCCTTTTA 59.330 40.000 0.00 0.00 0.00 1.52
3443 3903 4.478686 AGCCAACTATGTATCTCCCCTTTT 59.521 41.667 0.00 0.00 0.00 2.27
3444 3904 4.047883 AGCCAACTATGTATCTCCCCTTT 58.952 43.478 0.00 0.00 0.00 3.11
3445 3905 3.669949 AGCCAACTATGTATCTCCCCTT 58.330 45.455 0.00 0.00 0.00 3.95
3446 3906 3.352611 AGCCAACTATGTATCTCCCCT 57.647 47.619 0.00 0.00 0.00 4.79
3447 3907 4.347000 TGTAAGCCAACTATGTATCTCCCC 59.653 45.833 0.00 0.00 0.00 4.81
3448 3908 5.070580 AGTGTAAGCCAACTATGTATCTCCC 59.929 44.000 0.00 0.00 0.00 4.30
3449 3909 6.163135 AGTGTAAGCCAACTATGTATCTCC 57.837 41.667 0.00 0.00 0.00 3.71
3450 3910 5.915758 CGAGTGTAAGCCAACTATGTATCTC 59.084 44.000 0.00 0.00 0.00 2.75
3451 3911 5.736492 GCGAGTGTAAGCCAACTATGTATCT 60.736 44.000 0.00 0.00 0.00 1.98
3452 3912 4.444720 GCGAGTGTAAGCCAACTATGTATC 59.555 45.833 0.00 0.00 0.00 2.24
3453 3913 4.369182 GCGAGTGTAAGCCAACTATGTAT 58.631 43.478 0.00 0.00 0.00 2.29
3454 3914 3.777478 GCGAGTGTAAGCCAACTATGTA 58.223 45.455 0.00 0.00 0.00 2.29
3455 3915 2.618053 GCGAGTGTAAGCCAACTATGT 58.382 47.619 0.00 0.00 0.00 2.29
3464 3924 0.721718 GTGATGTGGCGAGTGTAAGC 59.278 55.000 0.00 0.00 0.00 3.09
3465 3925 2.078849 TGTGATGTGGCGAGTGTAAG 57.921 50.000 0.00 0.00 0.00 2.34
3466 3926 2.139917 GTTGTGATGTGGCGAGTGTAA 58.860 47.619 0.00 0.00 0.00 2.41
3467 3927 1.069358 TGTTGTGATGTGGCGAGTGTA 59.931 47.619 0.00 0.00 0.00 2.90
3468 3928 0.179059 TGTTGTGATGTGGCGAGTGT 60.179 50.000 0.00 0.00 0.00 3.55
3469 3929 0.943673 TTGTTGTGATGTGGCGAGTG 59.056 50.000 0.00 0.00 0.00 3.51
3470 3930 1.603802 CTTTGTTGTGATGTGGCGAGT 59.396 47.619 0.00 0.00 0.00 4.18
3471 3931 1.603802 ACTTTGTTGTGATGTGGCGAG 59.396 47.619 0.00 0.00 0.00 5.03
3472 3932 1.674359 ACTTTGTTGTGATGTGGCGA 58.326 45.000 0.00 0.00 0.00 5.54
3473 3933 2.289274 TGTACTTTGTTGTGATGTGGCG 59.711 45.455 0.00 0.00 0.00 5.69
3474 3934 3.980646 TGTACTTTGTTGTGATGTGGC 57.019 42.857 0.00 0.00 0.00 5.01
3496 3956 8.805175 TGAGTGTTTGGATGATGAATGTTATTT 58.195 29.630 0.00 0.00 0.00 1.40
3497 3957 8.352137 TGAGTGTTTGGATGATGAATGTTATT 57.648 30.769 0.00 0.00 0.00 1.40
3498 3958 7.943079 TGAGTGTTTGGATGATGAATGTTAT 57.057 32.000 0.00 0.00 0.00 1.89
3499 3959 7.148035 CCATGAGTGTTTGGATGATGAATGTTA 60.148 37.037 0.00 0.00 34.81 2.41
3500 3960 6.350696 CCATGAGTGTTTGGATGATGAATGTT 60.351 38.462 0.00 0.00 34.81 2.71
3501 3961 5.126545 CCATGAGTGTTTGGATGATGAATGT 59.873 40.000 0.00 0.00 34.81 2.71
3502 3962 5.588240 CCATGAGTGTTTGGATGATGAATG 58.412 41.667 0.00 0.00 34.81 2.67
3503 3963 4.098960 GCCATGAGTGTTTGGATGATGAAT 59.901 41.667 0.00 0.00 34.81 2.57
3504 3964 3.444742 GCCATGAGTGTTTGGATGATGAA 59.555 43.478 0.00 0.00 34.81 2.57
3505 3965 3.018856 GCCATGAGTGTTTGGATGATGA 58.981 45.455 0.00 0.00 34.81 2.92
3506 3966 2.100252 GGCCATGAGTGTTTGGATGATG 59.900 50.000 0.00 0.00 34.81 3.07
3507 3967 2.381911 GGCCATGAGTGTTTGGATGAT 58.618 47.619 0.00 0.00 34.81 2.45
3508 3968 1.616725 GGGCCATGAGTGTTTGGATGA 60.617 52.381 4.39 0.00 34.81 2.92
3509 3969 0.819582 GGGCCATGAGTGTTTGGATG 59.180 55.000 4.39 0.00 34.81 3.51
3510 3970 0.409092 TGGGCCATGAGTGTTTGGAT 59.591 50.000 0.00 0.00 34.81 3.41
3511 3971 0.187117 TTGGGCCATGAGTGTTTGGA 59.813 50.000 7.26 0.00 34.81 3.53
3512 3972 0.318120 GTTGGGCCATGAGTGTTTGG 59.682 55.000 7.26 0.00 36.03 3.28
3513 3973 1.331214 AGTTGGGCCATGAGTGTTTG 58.669 50.000 7.26 0.00 0.00 2.93
3514 3974 2.514803 GTAGTTGGGCCATGAGTGTTT 58.485 47.619 7.26 0.00 0.00 2.83
3515 3975 1.610624 CGTAGTTGGGCCATGAGTGTT 60.611 52.381 7.26 0.00 0.00 3.32
3516 3976 0.036388 CGTAGTTGGGCCATGAGTGT 60.036 55.000 7.26 0.00 0.00 3.55
3517 3977 0.249120 TCGTAGTTGGGCCATGAGTG 59.751 55.000 7.26 0.00 0.00 3.51
3518 3978 0.249398 GTCGTAGTTGGGCCATGAGT 59.751 55.000 7.26 0.00 0.00 3.41
3519 3979 0.806102 CGTCGTAGTTGGGCCATGAG 60.806 60.000 7.26 0.00 0.00 2.90
3520 3980 1.216977 CGTCGTAGTTGGGCCATGA 59.783 57.895 7.26 0.00 0.00 3.07
3521 3981 2.461110 GCGTCGTAGTTGGGCCATG 61.461 63.158 7.26 0.00 0.00 3.66
3522 3982 2.125269 GCGTCGTAGTTGGGCCAT 60.125 61.111 7.26 0.00 0.00 4.40
3523 3983 4.382320 GGCGTCGTAGTTGGGCCA 62.382 66.667 0.00 0.00 43.23 5.36
3524 3984 3.887335 TTGGCGTCGTAGTTGGGCC 62.887 63.158 0.00 0.00 44.00 5.80
3525 3985 1.508808 TTTTGGCGTCGTAGTTGGGC 61.509 55.000 0.00 0.00 0.00 5.36
3526 3986 1.161843 ATTTTGGCGTCGTAGTTGGG 58.838 50.000 0.00 0.00 0.00 4.12
3527 3987 3.255725 TCTATTTTGGCGTCGTAGTTGG 58.744 45.455 0.00 0.00 0.00 3.77
3528 3988 4.624024 TCTTCTATTTTGGCGTCGTAGTTG 59.376 41.667 0.00 0.00 0.00 3.16
3529 3989 4.813027 TCTTCTATTTTGGCGTCGTAGTT 58.187 39.130 0.00 0.00 0.00 2.24
3530 3990 4.445452 TCTTCTATTTTGGCGTCGTAGT 57.555 40.909 0.00 0.00 0.00 2.73
3531 3991 5.773239 TTTCTTCTATTTTGGCGTCGTAG 57.227 39.130 0.00 0.00 0.00 3.51
3532 3992 5.106987 GGTTTTCTTCTATTTTGGCGTCGTA 60.107 40.000 0.00 0.00 0.00 3.43
3533 3993 4.319984 GGTTTTCTTCTATTTTGGCGTCGT 60.320 41.667 0.00 0.00 0.00 4.34
3534 3994 4.156182 GGTTTTCTTCTATTTTGGCGTCG 58.844 43.478 0.00 0.00 0.00 5.12
3535 3995 4.022676 TGGGTTTTCTTCTATTTTGGCGTC 60.023 41.667 0.00 0.00 0.00 5.19
3536 3996 3.892588 TGGGTTTTCTTCTATTTTGGCGT 59.107 39.130 0.00 0.00 0.00 5.68
3537 3997 4.513198 TGGGTTTTCTTCTATTTTGGCG 57.487 40.909 0.00 0.00 0.00 5.69
3538 3998 5.606505 TGTTGGGTTTTCTTCTATTTTGGC 58.393 37.500 0.00 0.00 0.00 4.52
3539 3999 7.656707 CATGTTGGGTTTTCTTCTATTTTGG 57.343 36.000 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.